Citrus Sinensis ID: 044393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHcHHHcccccccEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEccHHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccEEHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHcccccccccEEEEEEEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccEEEEEEcccccccHHHccccccccEEEEEEccHHHHHHccccccEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHcccccccccHHHHEEcHcccccHHHHHHHHEHEcccccccEcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHcccccEEEEEccccccccccccccccEEEEcc
Coil and Loop (DISEMBL)
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKkscfngwcpnwgfrywmgrkasketrklsdlqdrgkfntvalpkplpsdkemhiprffssFETTKSACNQITEALKKGstkmvglhglggvgktTLAKFVGNQlrqekifdevgiatvsqdpdiINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKeldletvgipancCKILLTTRLQQVCDrmgcdtrikldaLDQAEGLDLLrehagidvadttLTDVSKRVADECKGLPLAIKVVGsaltgrnaDEWNVALDKLQNakldkiegidkdslgvygCLKFsydylngedsrSCFLLCslfpedykidLEDLLGYAVGLVWYQAESIEKARSLLRGTIkglkdssllldidddgfvKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL
Flexible Loop (DISEMBL)
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKeaqdgiherveqerqihraidieKDVEKWLADVVKEMADVQTLktkiaekkscfngwcpnwGFRYWMGRKASKETrklsdlqdrgkfntvalpkplpsdkemHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGiatvsqdpdiiNVQSELVKWLGwelkekdeeeradrlrlmfseskgrkilIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKiegidkdslgvyGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL
Low Complexity Region (SEG)
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTikglkdssllldidddgFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL
Disordered region (IsUnstruct)
***LAGIASKLGELLVDATVKQARYLFCFNSIVKEL**********************QIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGR************************************RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK**********LRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQ******
Disordered Region (DISOPRED)
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQER**HRAIDIEKDVEKWLADVVKEMADVQTL********SCFNGWCPNWGFRYWMGRKASKETRKLSDLQDR******************************KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGW*****************FSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKL******DKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL
Disordered Region (DISEMBL)
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL
Disordered Region (DISPRO)
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALP****SDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
P60838	894	Probable disease resistan	yes	no	0.945	0.542	0.311	1e-50
Q8L3R3	885	Disease resistance protei	no	no	0.937	0.543	0.297	3e-50
O64973	889	Disease resistance protei	no	no	0.947	0.546	0.307	4e-49
Q9T048	985	Disease resistance protei	no	no	0.894	0.465	0.317	1e-48
O22727	967	Probable disease resistan	no	no	0.869	0.461	0.288	4e-46
Q9LMP6	851	Probable disease resistan	no	no	0.898	0.541	0.311	3e-45
Q940K0	889	Probable disease resistan	no	no	0.863	0.498	0.286	3e-44
Q8RXS5	888	Probable disease resistan	no	no	0.863	0.498	0.302	5e-44
O64789	925	Probable disease resistan	no	no	0.881	0.488	0.276	1e-43
Q9FG91	848	Probable disease resistan	no	no	0.842	0.509	0.302	2e-43

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  201 bits (511), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 163/524 (31%), Positives = 267/524 (50%), Gaps = 39/524 (7%)

Query: 17  DATVKQARYLFCFN---------SIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIE 67
           D  V Q     C N         ++V   +D E  LK+ +D +  RV+ E    R   + 
Sbjct: 12  DEVVNQISQGLCINVGYICELSKNVVAMKKDMEV-LKKKRDDVKRRVDIEEFTRRRERLS 70

Query: 68  KDVEKWLADV-VKEMADVQTLKTKIAE-KKSCFNGWCP-NWGFRYWMGRKASKETRKLSD 124
           + V+ WL +V   E    + L T  AE ++ C  G+C  N    Y  G++     +++  
Sbjct: 71  Q-VQGWLTNVSTVENKFNELLTTNDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLKEIES 129

Query: 125 LQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGG 184
           L  +G F+TV L  P+   +EM I       ET      ++   L +   ++VGL+G+GG
Sbjct: 130 LSSQGDFDTVTLATPIARIEEMPIQPTIVGQET---MLERVWTRLTEDGDEIVGLYGMGG 186

Query: 185 VGKTTLAKFVGNQLRQE-KIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERAD 243
           VGKTTL   + N+  ++   F  V    VS+ PDI  +Q ++ K L    +E D      
Sbjct: 187 VGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVNENQ 246

Query: 244 RLRLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDT 299
           R   +++    +K +++LDD+W++++LE +G+P     N CK++ TTR + VC RM  D 
Sbjct: 247 RALDIYNVLGKQKFVLLLDDIWEKVNLEVLGVPYPSRQNGCKVVFTTRSRDVCGRMRVDD 306

Query: 300 RIKLDALDQAEGLDLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALT-GR 356
            +++  L+  E  +L +   G +       + +++++VA +C GLPLA+ V+G  +   R
Sbjct: 307 PMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACKR 366

Query: 357 NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDY 416
              EW  A+D L +   +   G+++    +   LK+SYD LN E  + CFL CSLFPEDY
Sbjct: 367 MVQEWRNAIDVLSSYAAE-FPGMEQ----ILPILKYSYDNLNKEQVKPCFLYCSLFPEDY 421

Query: 417 KIDLEDLLGYAV--GLVWYQAESIEKARSLLRGTIKGLKDSSLLLD--IDDDGFVKMHDI 472
           +++ E L+ Y +  G +  + ES E+A S     I  L  + LLL+  I+ +  VKMHD+
Sbjct: 422 RMEKERLIDYWICEGFI-DENESRERALSQGYEIIGILVRACLLLEEAINKEQ-VKMHDV 479

Query: 473 VRDVAIWIGK---VEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
           VR++A+WI       K+    +VG+GL E    +     R +SL
Sbjct: 480 VREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSL 523

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  200 bits (508), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 272/534 (50%), Gaps = 53/534 (9%)

Query: 14  LLVDATVKQARYLFCFN-SIVKELEDKETNLKEA-------QDGIHERVEQERQI-HRAI 64
           L  D  V Q     C + S ++ L +   +L++A       +D +  R+ +E    HR  
Sbjct: 9   LSCDREVNQFSQWLCVSGSYIQNLSENLASLQKAMGVLNAKRDDVQGRINREEFTGHR-- 66

Query: 65  DIEKDVEKWLADVVKEMADVQTLKTKIAE---------KKSCFNGWCP-NWGFRYWMGRK 114
                  + LA V   +  +QT++ +  +         ++ C  G+C  N    Y  G++
Sbjct: 67  -------RRLAQVQVWLTRIQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKR 119

Query: 115 ASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGST 174
                R++  L  +G F+ V    P+   +E+ I    S+     S  +++   L +   
Sbjct: 120 VIVLLREVEGLSSQGVFDIVTEAAPIAEVEELPIQ---STIVGQDSMLDKVWNCLMEDKV 176

Query: 175 KMVGLHGLGGVGKTTLAKFVGNQLRQ-EKIFDEVGIATVSQDPDIINVQSELVKWLGWEL 233
            +VGL+G+GGVGKTTL   + N+  +    FD V    VS++  +  +Q  + + LG   
Sbjct: 177 WIVGLYGMGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSIGEKLGLVG 236

Query: 234 KEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA----NCCKILLTTRLQ 289
           K  DE+ +  R   + +  + +K +++LDD+W++++L+ +G+P     N CK+  TT  +
Sbjct: 237 KNWDEKNKNQRALDIHNVLRRKKFVLLLDDIWEKVELKVIGVPYPSGENGCKVAFTTHSK 296

Query: 290 QVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIK 347
           +VC RMG D  +++  LD     DLL++  G +   +   +  ++++V+++C GLPLA+ 
Sbjct: 297 EVCGRMGVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALN 356

Query: 348 VVGSALT-GRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCF 406
           V+G  ++  R   EW  A + L +A      G++ + L +   LK+SYD LNGED++SCF
Sbjct: 357 VIGETMSFKRTIQEWRHATEVLTSAT--DFSGMEDEILPI---LKYSYDSLNGEDAKSCF 411

Query: 407 LLCSLFPEDYKIDLEDLLGYAV--GLVWYQAESIEKARSLLRGTIKGLKDSSLLLD-IDD 463
           L CSLFPED++I  E L+ Y +  G +  + +  EKA +     +  L  SSLLL+   D
Sbjct: 412 LYCSLFPEDFEIRKEMLIEYWICEGFI-KEKQGREKAFNQGYDILGTLVRSSLLLEGAKD 470

Query: 464 DGFVKMHDIVRDVAIWI----GKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
              V MHD+VR++A+WI    GK  K+    + GIGL E    E     + +SL
Sbjct: 471 KDVVSMHDMVREMALWIFSDLGK-HKERCIVQAGIGLDELPEVENWRAVKRMSL 523

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 163/530 (30%), Positives = 267/530 (50%), Gaps = 44/530 (8%)

Query: 14  LLVDATVKQARYLFCFN-SIVKELEDKETNLKEA-------QDGIHERVEQERQIHRAID 65
           L  D  V Q   L C   S +  L     +L++A       Q  +  R+E E    R   
Sbjct: 9   LPCDQVVSQFSQLLCVRGSYIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTGRQQR 68

Query: 66  IEKDVEKWLADVVKEMADVQTL--KTKIAEKKSCFNGWCP-NWGFRYWMGRKASKETRKL 122
           + + V+ WL  V+        L    ++  ++ C  G+C  +    Y  G++     +++
Sbjct: 69  LSQ-VQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMMLKEV 127

Query: 123 SDLQDRGKFNTVALPKPLPSDKEMHI-PRFFSSFETTKSACNQITEALKKGSTKMVGLHG 181
             L  +G F+ V+   P     E+   P         + A N++ E      + ++GL+G
Sbjct: 128 ESLSSQGFFDVVSEATPFADVDEIPFQPTIVGQEIMLEKAWNRLME----DGSGILGLYG 183

Query: 182 LGGVGKTTLAKFVGNQLRQ-EKIFDEVGIATVSQDPDIINVQ---SELVKWLGWELKEKD 237
           +GGVGKTTL   + N+  + +  FD V    VS+   +  +Q   +E V   G E  EK+
Sbjct: 184 MGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWSEKN 243

Query: 238 EEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA----NCCKILLTTRLQQVCD 293
           + + A  +  +    + RK +++LDD+W++++L+ VG+P     N CK+  TTR + VC 
Sbjct: 244 DNQIAVDIHNVL---RRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCG 300

Query: 294 RMGCDTRIKLDALDQAEGLDLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGS 351
           RMG D  +++  L   E  DL +   G +   +   +  ++++VA +C+GLPLA+ V+G 
Sbjct: 301 RMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGE 360

Query: 352 ALT-GRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCS 410
           A+   R   EW  A+D L ++ +D   G++ + L V   LK+SYD LNGE  +SCFL CS
Sbjct: 361 AMACKRTVHEWCHAIDVLTSSAID-FSGMEDEILHV---LKYSYDNLNGELMKSCFLYCS 416

Query: 411 LFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRG--TIKGLKDSSLLLDID-DDGFV 467
           LFPEDY ID E L+ Y +    +  E   + R++ +G   I  L  + LLL+ + +   V
Sbjct: 417 LFPEDYLIDKEGLVDYWIS-EGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNV 475

Query: 468 KMHDIVRDVAIWI----GKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
           KMHD+VR++A+WI    GK ++K    + G+GL E    +     R ISL
Sbjct: 476 KMHDVVREMALWISSDLGKQKEKCIV-RAGVGLREVPKVKDWNTVRKISL 524

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 157/494 (31%), Positives = 256/494 (51%), Gaps = 35/494 (7%)

Query: 1   MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQI 60
           ME  A +  ++  L+ ++T  +      F S VK L +    L E +  + E  + E  +
Sbjct: 1   MECCAPVIGEILRLMYESTFSRVANAIKFKSNVKALNESLERLTELKGNMSE--DHETLL 58

Query: 61  HRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETR 120
            +   +   + +W  +  + ++     + K+ E+ SC          R  M RK  K   
Sbjct: 59  TKDKPLRLKLMRWQREAEEVISKA---RLKLEERVSC------GMSLRPRMSRKLVKILD 109

Query: 121 KLSDLQDRG-KFNTVALPKPLPSDKEMHIPRFFSSFETTKS-ACNQITEALKKGSTKMVG 178
           ++  L+  G +F  +   +  P   E H+P      +T  S    +I + L     + +G
Sbjct: 110 EVKMLEKDGIEFVDMLSVESTPERVE-HVPGVSVVHQTMASNMLAKIRDGLTSEKAQKIG 168

Query: 179 LHGLGGVGKTTLAKFVGNQLRQE---KIFDEVGIATVSQDPDIINVQSELVKWLGWELKE 235
           + G+GGVGKTTL + + N+LR+E   + F  V    VS++ D   VQ ++ + L  + + 
Sbjct: 169 VWGMGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQKQIAERLDIDTQM 228

Query: 236 KDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN----CCKILLTTRLQQV 291
           ++ EE+  R R+     K RK L+ILDDVWK +DL+ +GIP        K++LT+R  +V
Sbjct: 229 EESEEKLAR-RIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSRFLEV 287

Query: 292 CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS 351
           C  M  D  +++D L + +  +L  ++AG  V    +  ++K V+ EC GLPLAI  VG+
Sbjct: 288 CRSMKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGT 347

Query: 352 ALTG-RNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCS 410
           A+ G +N   WN  L KL  + +  I+ I++    ++  LK SYD+L  + ++ CFLLC+
Sbjct: 348 AMRGKKNVKLWNHVLSKLSKS-VPWIKSIEEK---IFQPLKLSYDFLE-DKAKFCFLLCA 402

Query: 411 LFPEDYKIDLEDLLGY--AVGLVWYQAESIEKARSLLRG--TIKGLKDSSLLLDIDDDGF 466
           LFPEDY I++ +++ Y  A G   +  E   +  S+  G  T++ LKD  LL D D    
Sbjct: 403 LFPEDYSIEVTEVVRYWMAEG---FMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDT 459

Query: 467 VKMHDIVRDVAIWI 480
           VKMHD+VRD AIWI
Sbjct: 460 VKMHDVVRDFAIWI 473

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  186 bits (472), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 251/493 (50%), Gaps = 47/493 (9%)

Query: 31  SIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTK 90
           ++ +E+ED      E Q+ +     + +Q   A+ +  D    +    K++  V    + 
Sbjct: 37  ALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECKDLLSV----SP 92

Query: 91  IAEKKSCFNGWCPNW---GFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMH 147
           +  +K C  G C  +    ++Y  G++      +++ L+  G F+ V+ P P    +E  
Sbjct: 93  VELQKLCLCGLCSKYVCSSYKY--GKRVFLLLEEVTKLKSEGNFDEVSQPPPRSEVEERP 150

Query: 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IFDE 206
                   E  K A N++ E        ++GLHG+GGVGKTTL K + N+  +    FD 
Sbjct: 151 TQPTIGQEEMLKKAWNRLME----DGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDI 206

Query: 207 VGIATVSQDPDIINVQSELVKWLG-----WELKEKDEEERADRLRLMFSESKGRKILIIL 261
           V    VSQ   +  +Q ++ + L      W  K K+E ++A  +  +    KG++ +++L
Sbjct: 207 VIWIVVSQGAKLSKLQEDIAEKLHLCDDLW--KNKNESDKATDIHRVL---KGKRFVLML 261

Query: 262 DDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLRE 317
           DD+W+++DLE +GIP     N CK+  TTR Q+VC +MG    +++  L+  +  +L + 
Sbjct: 262 DDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKN 321

Query: 318 HAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRN-ADEWNVALDKLQNAKLD 374
             G +   +D  +  +++ VA +C+GLPLA+  +G  +  +    EW  A+D L  +  +
Sbjct: 322 KVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAE 381

Query: 375 KIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAV--GLVW 432
             +  +K    +   LK+SYD L  E  +SCFL C+LFPED KID + L+   +  G + 
Sbjct: 382 FSDMQNK----ILPILKYSYDSLEDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIG 437

Query: 433 YQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVK----MHDIVRDVAIWIGK---VEK 485
            + + I++AR+     +  L  ++LL   +D GFVK    MHD+VR++A+WI      +K
Sbjct: 438 -EDQVIKRARNKGYEMLGTLIRANLL--TNDRGFVKWHVVMHDVVREMALWIASDFGKQK 494

Query: 486 KYFTSKVGIGLAE 498
           + +  +  +GL E
Sbjct: 495 ENYVVRARVGLHE 507

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score =  183 bits (465), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 156/501 (31%), Positives = 251/501 (50%), Gaps = 40/501 (7%)

Query: 40  ETNLKEAQDGIHERVEQERQIHRAIDIEKD--------VEKWLA---DVVKEMADVQTLK 88
           E NL+  Q+ + E  E+   + R + IE+D        V+ WL+   DV  ++ D+   K
Sbjct: 33  EANLEALQNTMQELEERRDDLLRRVVIEEDKGLQRLAQVQGWLSRVKDVCSQVNDLLKAK 92

Query: 89  TKIAEKKSCFNGWCP-NWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMH 147
           + I  ++ C  G+C  N+      G    K+ + +  L  +G F  VA   P P  ++ H
Sbjct: 93  S-IQTERLCLCGYCSKNFISGRNYGINVLKKLKHVEGLLAKGVFEVVAEKIPAPKVEKKH 151

Query: 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ-LRQEKIFDE 206
           I            A N    +L K   + +GL+G+GGVGKTTL   + N+ L     FD 
Sbjct: 152 IQTTVGLDAMVGRAWN----SLMKDERRTLGLYGMGGVGKTTLLASINNKFLEGMNGFDL 207

Query: 207 VGIATVSQDPDIINVQSELVKWLGWEL--KEKDEEERADRLRLMFSESKGRKILIILDDV 264
           V    VS+D     +Q +++  LG     K+  E+E+A  +  + +    +K +++LDD+
Sbjct: 208 VIWVVVSKDLQNEGIQEQILGRLGLHRGWKQVTEKEKASYICNILNV---KKFVLLLDDL 264

Query: 265 WKELDLETVGIPA----NCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAG 320
           W E+DLE +G+P     N  KI+ TTR + VC  M  D  +K+D L   E  +L ++  G
Sbjct: 265 WSEVDLEKIGVPPLTRENGSKIVFTTRSKDVCRDMEVDGEMKVDCLPPDEAWELFQKKVG 324

Query: 321 IDVADTT--LTDVSKRVADECKGLPLAIKVVGSALTGR-NADEWNVALDKLQNAKLDKIE 377
                +   +  ++++VA++C GLPLA+ V+G A+  R    EW   +  L N+   +  
Sbjct: 325 PIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAMASRETVQEWQHVIHVL-NSSSHEFP 383

Query: 378 GIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQA-E 436
            +++  L V   LKFSYD L  E  + CFL CSLFPEDY++  E+L+ Y +   +    E
Sbjct: 384 SMEEKILPV---LKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNE 440

Query: 437 SIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWI----GKVEKKYFTSKV 492
             + A +     I  L  + LL+D +    VKMHD++R++A+WI    GK +K+    K 
Sbjct: 441 DEDGANNKGHDIIGSLVRAHLLMDGELTTKVKMHDVIREMALWIASNFGK-QKETLCVKP 499

Query: 493 GIGLAEWAVEEGLEQYRGISL 513
           G+ L     +   E  R +SL
Sbjct: 500 GVQLCHIPKDINWESLRRMSL 520

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 253/493 (51%), Gaps = 50/493 (10%)

Query: 31  SIVKELEDKETNLKEAQDGIHERVEQERQIH-RAIDIEKDVEKWLADVVK---EMADVQT 86
           ++ +E+ED    L+  Q  +  +V ++   H R ++    V+ WL  V     E  D+ +
Sbjct: 36  ALQREMED----LRAIQHEVQNKVARDEARHQRRLEA---VQVWLDRVNSVDIECKDLLS 88

Query: 87  LKTKIAEKKSCFNGWCPNW---GFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSD 143
           + T +  +K C  G C  +    ++Y  G+K      ++  L   G F+ V+ P P    
Sbjct: 89  V-TPVELQKLCLCGLCSKYVCSSYKY--GKKVFLLLEEVKKLNSEGNFDEVSQPPPRSEV 145

Query: 144 KEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-EK 202
           +E          +  + A N++ E        ++GLHG+GGVGKTTL K + N+  +   
Sbjct: 146 EERPTQPTIGQEDMLEKAWNRLME----DGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGG 201

Query: 203 IFDEVGIATVSQDPDIINVQSELVKWLG-----WELKEKDEEERADRLRLMFSESKGRKI 257
            FD V    VS+   I  +Q ++ + L      W  K K+E ++A  +  +    KG++ 
Sbjct: 202 TFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLW--KNKNESDKATDIHRVL---KGKRF 256

Query: 258 LIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLD 313
           +++LDD+W+++DLE +GIP     N CK+  TTR ++VC  MG    ++++ L+  +  +
Sbjct: 257 VLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAWE 316

Query: 314 LLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRN-ADEWNVALDKLQN 370
           L +   G +   +D  + ++++ VA +C+GLPLA+ V+G  ++ +    EW  A+     
Sbjct: 317 LFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNT 376

Query: 371 AKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAV-- 428
           +  +  +  +K    +   LK+SYD L  E  +SCFL C+LFPED +I  E L+ Y +  
Sbjct: 377 SAAEFSDMQNK----ILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDYWICE 432

Query: 429 GLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGK---VEK 485
           G +  + + I++AR+     +  L  ++LL  +    +  MHD+VR++A+WI      +K
Sbjct: 433 GFIG-EDQVIKRARNKGYAMLGTLTRANLLTKV-GTYYCVMHDVVREMALWIASDFGKQK 490

Query: 486 KYFTSKVGIGLAE 498
           + F  + G+GL E
Sbjct: 491 ENFVVQAGVGLHE 503

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  179 bits (454), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 152/503 (30%), Positives = 256/503 (50%), Gaps = 60/503 (11%)

Query: 28  CFNS---IVKELEDKETNLKEAQDGIHERVEQE-RQI----HRAIDIEKDVEKWLADV-- 77
           C N     +  LE+  T L+ A + I +R E   R+I     R +     V+ W++ V  
Sbjct: 21  CLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVEA 80

Query: 78  ----VKEMADVQTLKTKIAEKKSCFNGWCP-NWGFRYWMGRKASKETRKLSDLQDRGKFN 132
               V E+  +++++ +    + C  G+C  N    Y  G++  K   ++  L+ +G F 
Sbjct: 81  IVPRVNELVRMRSVQVQ----RLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFA 136

Query: 133 TVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAK 192
            VA        +E       +     +SA N++ E        ++GLHG+GGVGKTTL  
Sbjct: 137 VVAERVDAARVEERPTRPMVAMDPMLESAWNRLME----DEIGILGLHGMGGVGKTTLLS 192

Query: 193 FVGNQL-RQEKIFDEVGIATVSQDPDIINVQSELVKWLGWE--------LKEKDEEERAD 243
            + N+  R    FD V    VS++  I  +Q E+     WE         K+K E+ +A 
Sbjct: 193 HINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEI-----WEKLRSDNEKWKQKTEDIKAS 247

Query: 244 RLRLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDT 299
            +   ++  K ++ +++LDD+W ++DL  VG+P     N CKI+ TTRL+++C RMG D+
Sbjct: 248 NI---YNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDS 304

Query: 300 RIKLDALDQAEGLDLLREHAG-IDV-ADTTLTDVSKRVADECKGLPLAIKVVGSALT-GR 356
            +++  L   +  DL  +  G I + +   +  V++ VA +C+GLPLA+ V+G  +   R
Sbjct: 305 DMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKR 364

Query: 357 NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDY 416
              EW  A+D L ++  +   G++ + L +   LK+SYD L  E  + CF  C+LFPED+
Sbjct: 365 TVQEWRSAIDVLTSSAAE-FSGMEDEILPI---LKYSYDNLKSEQLKLCFQYCALFPEDH 420

Query: 417 KIDLEDLLGYAVGLVWYQAESIEKARSLLRGT-IKGLKDSSLLLDIDDDGFVKMHDIVRD 475
            I+  DL+ Y +G  +       K ++  +G  I G+   S LL  ++   VKMHD+VR+
Sbjct: 421 NIEKNDLVDYWIGEGFIDR---NKGKAENQGYEIIGILVRSCLLMEENQETVKMHDVVRE 477

Query: 476 VAIWI----GKVEKKYFTSKVGI 494
           +A+WI    GK +K+ F  + G+
Sbjct: 478 MALWIASDFGK-QKENFIVQAGL 499

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 244/499 (48%), Gaps = 47/499 (9%)

Query: 29  FNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLK 88
             ++ +E+ED      E Q+ +     + +Q   A+ +  D    +    K++  V    
Sbjct: 36  LRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECKDLLSV---- 91

Query: 89  TKIAEKKSCFNGWCPNW-GFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMH 147
           + +  +K C  G C  +    Y  G+K      ++  L+  G F+ V+ P P    +E  
Sbjct: 92  SPVELQKLCLCGLCTKYVCSSYKYGKKVFLLLEEVKILKSEGNFDEVSQPPPRSEVEERP 151

Query: 148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-EKIFDE 206
                   E  + A N++ E        ++GLHG+GGVGKTTL K + N+  +    FD 
Sbjct: 152 TQPTIGQEEMLEKAWNRLME----DGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDI 207

Query: 207 VGIATVSQDPDIINVQSELVKWLG-----WELKEKDEEERADRLRLMFSESKGRKILIIL 261
           V    VSQ   +  +Q ++ + L      W  K K+E ++A  +  +    KG++ +++L
Sbjct: 208 VIWIVVSQGAKLSKLQEDIAEKLHLCDDLW--KNKNESDKATDIHRVL---KGKRFVLML 262

Query: 262 DDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLRE 317
           DD+W+++DLE +GIP     N CK+  TTR ++VC  MG    ++++ L+  +  +L + 
Sbjct: 263 DDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAWELFKN 322

Query: 318 HAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRN-ADEWNVALDKLQNAKLD 374
             G +   +D  +  +++ VA +C+GLPLA+ V+G  +  +    EW  A+D L  +  +
Sbjct: 323 KVGDNTLSSDPVIVGLAREVAQKCRGLPLALNVIGETMASKTMVQEWEYAIDVLTRSAAE 382

Query: 375 KIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAV--GLVW 432
              G++   L +   LK+SYD L  E  +SCFL C+LFPED +I  E L+   +  G + 
Sbjct: 383 -FSGMENKILPI---LKYSYDSLGDEHIKSCFLYCALFPEDGQIYTETLIDKLICEGFIG 438

Query: 433 YQAESIEKARSLLRGTIKGLKDSSLLLDIDDD----------GFVKMHDIVRDVAIWIGK 482
            + + I++AR+     +  L  ++LL  +  +              MHD+VR++A+WI  
Sbjct: 439 -EDQVIKRARNKGYAMLGTLTRANLLTKVGTELANLLTKVSIYHCVMHDVVREMALWIAS 497

Query: 483 ---VEKKYFTSKVGIGLAE 498
               +K+ F  +   GL E
Sbjct: 498 DFGKQKENFVVQASAGLHE 516

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/486 (30%), Positives = 242/486 (49%), Gaps = 54/486 (11%)

Query: 28  CFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKD--------VEKWLADV-- 77
           CF S    +   E+NL   Q  + E       +   + IE+D        V  WL+ V  
Sbjct: 20  CFLSDSNYIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNGWLSRVQI 79

Query: 78  ----VKEMADVQTLKTKIAEKKSCFNGWCP-NWGFRYWMGRKASKETRKLSDLQDRGKFN 132
                K++ +  +++T     + C  G+C  +    Y  G K  K   ++ +L  +  F 
Sbjct: 80  VESEFKDLLEAMSIETG----RLCLFGYCSEDCISSYNYGGKVMKNLEEVKELLSKKNFE 135

Query: 133 TVALPKPLPSDKEMHIPRFFSSFETTKSACNQIT---EALKKGSTKMVGLHGLGGVGKTT 189
            VA  K +P  ++ HI       +TT      +    E+L     + +GL+G+GG+GKTT
Sbjct: 136 VVA-QKIIPKAEKKHI-------QTTVGLDTMVGIAWESLIDDEIRTLGLYGMGGIGKTT 187

Query: 190 LAKFVGNQLRQ-EKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLM 248
           L + + N+  + E  FD V    VS+D  +  +Q +++  L  + KE + E  + +  L+
Sbjct: 188 LLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQILGRLRPD-KEWERETESKKASLI 246

Query: 249 FSESKGRKILIILDDVWKELDLETVGIPA----NCCKILLTTRLQQVCDRMGCDTRIKLD 304
            +  K +K +++LDD+W E+DL  +G+P     N  KI+ TTR ++VC  M  D +IK+D
Sbjct: 247 NNNLKRKKFVLLLDDLWSEVDLIKIGVPPPSRENGSKIVFTTRSKEVCKHMKADKQIKVD 306

Query: 305 ALDQAEGLDLLREHAG--IDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADEW 361
            L   E  +L R   G  I  +   +  +++ VA +C GLPLA+ V+G A+  +    EW
Sbjct: 307 CLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKAMVCKETVQEW 366

Query: 362 NVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLE 421
             A++ L N+   K  G+++  L +   LKFSYD L   + + CFL CSLFPED++I+ +
Sbjct: 367 RHAINVL-NSPGHKFPGMEERILPI---LKFSYDSLKNGEIKLCFLYCSLFPEDFEIEKD 422

Query: 422 DLLGYAVGLVWYQAESIEKARSLLRGTIKG------LKDSSLLLDIDDDGFVKMHDIVRD 475
            L+ Y     W     I   R    GT +G      L  + LL++ +    VKMHD++R+
Sbjct: 423 KLIEY-----WICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDVIRE 477

Query: 476 VAIWIG 481
           +A+WI 
Sbjct: 478 MALWIN 483

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
255563929	1114	Disease resistance protein RGA2, putativ	0.976	0.449	0.425	1e-105
224117086	1078	cc-nbs-lrr resistance protein [Populus t	0.943	0.448	0.424	1e-104
224112158	655	cc-nbs-lrr resistance protein [Populus t	0.968	0.758	0.404	2e-98
224112635	656	cc-nbs-lrr resistance protein [Populus t	0.941	0.736	0.403	4e-98
359494129	1144	PREDICTED: disease resistance protein At	0.978	0.438	0.404	9e-89
297735460	1042	unnamed protein product [Vitis vinifera]	0.976	0.480	0.353	1e-83
225445915	1063	PREDICTED: disease resistance protein At	0.976	0.471	0.353	1e-83
255563923	1455	Disease resistance protein RPH8A, putati	0.976	0.344	0.380	1e-81
297735461	1063	unnamed protein product [Vitis vinifera]	0.955	0.460	0.359	2e-81
357459805	1165	Cc-nbs-lrr resistance protein [Medicago	0.951	0.418	0.353	4e-81

>gi|255563929|ref|XP_002522964.1| Disease resistance protein RGA2, putative [Ricinus communis] gi|223537776|gb|EEF39394.1| Disease resistance protein RGA2, putative [Ricinus communis]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/512 (42%), Positives = 310/512 (60%), Gaps = 11/512 (2%)

Query: 7   IASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDI 66
            A+K+ ELL + T +Q RY+FCFNSIV+EL+ +E NL  A+D +  +V     +  A +I
Sbjct: 14  FATKITELLANPTRRQLRYVFCFNSIVEELKKEEKNLMLARDRVQNKVNM--ALRNAEEI 71

Query: 67  EKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQ 126
           EKDVE+W+ +    + DVQ LK +I +    F+ WC +W +RY   +K +K+   L  L 
Sbjct: 72  EKDVEEWMTETNTVIDDVQRLKIEIEKYMKYFDKWCSSWIWRYSFNKKVAKKAVILRRLW 131

Query: 127 DRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVG 186
           + GKF+TV+   PL S  E    + F+  ++++ A NQI  A+K     M+GL+G+GGVG
Sbjct: 132 ESGKFDTVSYQAPL-SGTEFFPSKDFTPSKSSRKALNQIMVAVKDDDVNMIGLYGMGGVG 190

Query: 187 KTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLR 246
           KTTL K    +    K+FD+V +  VSQ  D+I +Q ++   LG     K  E RA RL 
Sbjct: 191 KTTLVKEASRKATMLKLFDQVLMVVVSQAQDVIKIQDQMADKLGLNFDVKTTEGRARRLH 250

Query: 247 LMFSESKGRKILIILDDVWKELDLETVGIPA----NCCKILLTTRLQQVCDRMGCDTRIK 302
                 K  KILIILDDVW+ LDL+ +GIP       CKILLTTRL++VC  + C   I 
Sbjct: 251 KRLKNEK--KILIILDDVWRYLDLKDIGIPHGDDHKGCKILLTTRLRRVCASLNCQRDIP 308

Query: 303 LDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWN 362
           L  L ++E   L +  AG+    + L +V+ +V  +CKGLPLAI  VG AL  ++   W 
Sbjct: 309 LHVLTESEAWALFKNIAGLHDCSSDLNNVAVKVVRKCKGLPLAIVTVGRALRDKSFSGWK 368

Query: 363 VALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLED 422
           VAL KL++++L  I  +DKD    Y CLK S+D+L  E+++ C LLCSLFPEDY+I +ED
Sbjct: 369 VALQKLKSSRLIDIRDVDKDK-NAYACLKLSFDHLQCEETKLCLLLCSLFPEDYEIFVED 427

Query: 423 LLGYAVGLVWYQ-AESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIG 481
           L  YAVGL +YQ A+SI+  RS +   I  LK S LLL+ + +G VK+HD+VRD A+W+G
Sbjct: 428 LARYAVGLGFYQDAQSIDDVRSEVFEAIGDLKASCLLLETESEGHVKLHDMVRDFALWVG 487

Query: 482 KVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
              ++ F  +  +GL EW      + Y  +SL
Sbjct: 488 SRVEQAFRVRARVGLEEWPKTGNSDSYTAMSL 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117086|ref|XP_002331783.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222832242|gb|EEE70719.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/502 (42%), Positives = 309/502 (61%), Gaps = 18/502 (3%)

Query: 5   AGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAI 64
             I SK+ EL+V+   +Q RY+FCFN+ V+E ++++ NL  A DG+ + VE   +   A 
Sbjct: 8   GSIISKIAELMVEPVGRQFRYMFCFNTFVEEFKERKENLALALDGLQDDVEAAER--NAK 65

Query: 65  DIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSD 124
           +I +DV++WL D   E+   + L+ +I +   CF  WCPN   ++ + +  +K++    +
Sbjct: 66  EIYEDVKQWLEDANNEIEGAKPLENEIGKNGKCFT-WCPNCMRQFKLSKALAKKSETFRE 124

Query: 125 LQDRG-KFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLG 183
           L +   KF TVA  K  P   E    + F+  ++++ A  QI EALK     M+GL G+G
Sbjct: 125 LGESSEKFKTVA-HKAHPQPIEFLPSKEFTPLKSSEEAFEQIMEALKDDKVNMIGLCGMG 183

Query: 184 GVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERAD 243
           GVGKTTLAK VG + ++ ++F EV +ATVSQ+P++ ++Q  +   LG ++KEK  E RAD
Sbjct: 184 GVGKTTLAKEVGRRAKELQLFPEVLMATVSQNPNVTDIQDRMADKLGLDIKEKSREGRAD 243

Query: 244 RLRLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDT 299
           RLR +  E +  K+LIILDDVWK +DL+ +GIP       CKILLTTRLQ +C  M C  
Sbjct: 244 RLRHILKEVE--KMLIILDDVWKYIDLKEIGIPFGDDHRGCKILLTTRLQAICSSMECQQ 301

Query: 300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNAD 359
           ++ L  L + E L L R  AG+   D+TL  V++ VA EC+GLP+A+  VG AL G++  
Sbjct: 302 KVLLRVLTEDEALVLFRIKAGLRDGDSTLNTVAREVARECQGLPIALVTVGRALRGKSEV 361

Query: 360 EWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKID 419
           EW VA  +L+N++   +E ID+     Y CLK SYDYL  ++++ CFL+C LFPEDY I 
Sbjct: 362 EWEVAFRQLKNSQFLDMEHIDEQRTA-YACLKLSYDYLKSKETKLCFLICCLFPEDYNIP 420

Query: 420 LEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIW 479
           +EDL  YAVG +      IE AR  +   I+ LKD  +LL  + +  V+MHD+VRDVAI 
Sbjct: 421 IEDLTRYAVGYL------IEDARKRVSVAIENLKDCCMLLGTETEEHVRMHDLVRDVAIR 474

Query: 480 IGKVEKKYFTSKVGIGLAEWAV 501
           I   ++  F  K GIGL EW +
Sbjct: 475 IASSKEYGFMVKAGIGLKEWPM 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112158|ref|XP_002332820.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834208|gb|EEE72685.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/519 (40%), Positives = 310/519 (59%), Gaps = 22/519 (4%)

Query: 5   AGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAI 64
             I SK+ EL+V+   +Q RY+FCFN  VKE + ++  L   ++ + + V+   +   A 
Sbjct: 8   GSIISKIAELMVEPVGRQFRYMFCFNDFVKEFKQQKEKLVSEKERLQDDVKDAER--NAE 65

Query: 65  DIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSD 124
           +I +DV+KWL D   E+   + L+ +I +   CF  WCPN   ++   +  +K++    +
Sbjct: 66  EIYEDVKKWLGDAENEIEGAKPLENEIGKNGKCFT-WCPNCMRQFKFSKALAKKSETFRE 124

Query: 125 LQDR--GKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGL 182
           L ++   K +    P+P+    E    + F+  ++++ A   I EALK     M+GL G+
Sbjct: 125 LLEKKSTKVSHRTHPQPI----EFLQSKKFTPSKSSEEAFEHIMEALKDDKVNMIGLCGM 180

Query: 183 GGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERA 242
           GGVGKTTL + VG   R+ ++FDEV +ATVSQ+P++ ++Q+++   LG +++   ++ RA
Sbjct: 181 GGVGKTTLVRKVGTIARESQLFDEVLMATVSQNPNVTDLQNQMADKLGLDIRGSSKDGRA 240

Query: 243 DRL--RLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMG 296
           DRL  RL     K  ++LIILDDVWK +D + +GIP       CKILLTTRLQ +C    
Sbjct: 241 DRLWQRL----KKVERMLIILDDVWKVIDFQEIGIPFGDDHRGCKILLTTRLQGICSYTE 296

Query: 297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR 356
           C  ++ L  L + E  DL R +AG+ V ++TL  V++ VA EC+GLP+A+  VG AL  +
Sbjct: 297 CRKKVLLSPLPEKEAWDLFRINAGLRVGESTLNTVAREVARECQGLPIALVTVGMALRDK 356

Query: 357 NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDY 416
           +A EW VA+ +L+N+    +E ID+     Y CLK SYDYL  ++++ CFLLC LFPEDY
Sbjct: 357 SAVEWEVAIGQLKNSHFPDMEHIDEQRTA-YACLKLSYDYLKSKETKLCFLLCCLFPEDY 415

Query: 417 KIDLEDLLGYAVGLVWYQ-AESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRD 475
            I +EDL  YAVG   +Q  ESI  AR  +   IK LKD  +LLD + D  VKMHD+VRD
Sbjct: 416 HIPIEDLTRYAVGYELHQDVESIGDARKRVYVEIKKLKDCCMLLDTETDEHVKMHDLVRD 475

Query: 476 VAIWIGKVEKKYFTSKVGIGLAEWAVE-EGLEQYRGISL 513
           VAI I   ++  F  K GIGL EW +  +  E    ISL
Sbjct: 476 VAIRIASSQEYGFIIKAGIGLKEWPMSIKSFEACTTISL 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112635|ref|XP_002332743.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222833055|gb|EEE71532.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 205/508 (40%), Positives = 304/508 (59%), Gaps = 25/508 (4%)

Query: 5   AGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAI 64
             I SK+ ELLV+  ++Q RY+FCFN+ V+E +++  NL  A   + + V+  ++   A 
Sbjct: 8   GSIVSKILELLVEPAIRQFRYMFCFNNFVQEFDEQMMNLALAFYRLQDAVDVAQR--NAE 65

Query: 65  DIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSD 124
           +IE DV  WL D   ++  V+ L+ +  +   CF  WCPNW  ++ + +  +K+T  L  
Sbjct: 66  EIEIDVNTWLEDAKNKIEGVKRLQNEKGKIGKCFT-WCPNWMRQFKLSKALAKKTETLRK 124

Query: 125 LQDRGKFNTVALPKPL------PSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVG 178
           L+   KF  V+   PL      PSD        F+  ++++ A  QI +ALK  +  M+ 
Sbjct: 125 LEANCKFPKVSHKPPLQDIKFLPSDG-------FTPSKSSEEALEQIIKALKDDNVNMIR 177

Query: 179 LHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE 238
           L G+GGVGKTTL K VG + ++ ++FDEV +AT+SQ+P++  +Q ++   LG +  E  +
Sbjct: 178 LCGMGGVGKTTLVKEVGRRAKELQLFDEVLMATLSQNPNVTGIQDQMADRLGLKFDENSQ 237

Query: 239 EERADRLRLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDR 294
           E RA RL   +   +G+K+LI+LDDVWK++D + +GIP       CKILLTTRL+++C  
Sbjct: 238 EGRAGRL---WQRMQGKKMLIVLDDVWKDIDFQEIGIPFGDAHRGCKILLTTRLEKICSS 294

Query: 295 MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALT 354
           M C  ++ L  L + E   L + +AG+   D+ L  V+K VA EC+GLPLA+  VG AL 
Sbjct: 295 MDCQEKVFLGVLSENEAWALFKINAGLRDEDSDLNRVAKEVARECQGLPLALVTVGKALK 354

Query: 355 GRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPE 414
            ++  EW VA ++L+ ++   +E  D D    Y CLK SYDYL  E+++ CFLLC LFPE
Sbjct: 355 DKSEHEWEVASEELKKSQSRHMETFD-DRRNAYACLKLSYDYLKHEETKLCFLLCCLFPE 413

Query: 415 DYKIDLEDLLGYAVGLVWYQ-AESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIV 473
           DY I +E+L  YAVG   YQ  +SIE AR  +   I+ LK   +LL  + + +VKMHD+V
Sbjct: 414 DYNIPIEELTRYAVGYGLYQDVQSIEGARKRVYMEIENLKACCMLLGTETEEYVKMHDLV 473

Query: 474 RDVAIWIGKVEKKYFTSKVGIGLAEWAV 501
           RDVAI I   EK  F  + G GL EW +
Sbjct: 474 RDVAIQIASSEKYGFMVEAGFGLKEWPM 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494129|ref|XP_002278428.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 210/519 (40%), Positives = 294/519 (56%), Gaps = 17/519 (3%)

Query: 2   EILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIH 61
           E +  + S   + +V     Q  YL CF S  +    +   L+  +D +   +   ++  
Sbjct: 3   EWIGTVVSIFEKYVVRPIGYQISYLVCFRSKAEGCRKQVEKLELLKDKVQRSLVVAKR-- 60

Query: 62  RAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRK 121
           +  +IE +VEKWL  V K   DV+ L+ ++  KKS  NGWC +W  RYW+ R+  K T  
Sbjct: 61  KGENIEPEVEKWLTVVEKVTGDVEKLEDEV--KKSSSNGWCSDWTSRYWLSRELKKTTLS 118

Query: 122 LSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHG 181
           ++ LQ+ GKF+ V+   P P  + +        F+TT SA NQI E LK      + ++G
Sbjct: 119 IARLQEEGKFSKVSYSAPSPGIESLPTGDC-CPFQTTVSAMNQIIELLKGEECSTICVYG 177

Query: 182 LGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEER 241
           +GGVGKTTL K VG +++++K+FDEV IA VSQ PD+I +Q E+   LG E  E+ E  R
Sbjct: 178 MGGVGKTTLVKEVGKKVKKDKLFDEVAIAVVSQAPDLIKIQDEIADALGLEFHEEKEIGR 237

Query: 242 ADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANC----CKILLTTRLQQVCDRMGC 297
           A RLR      K  ++L+ILDDVW+ LDL  +GIP       CKILLTTR +  C+ MG 
Sbjct: 238 AGRLRERLKTEK--RVLVILDDVWERLDLGAIGIPHGVDHRGCKILLTTRREHTCNVMGS 295

Query: 298 D-TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR 356
             T+I L+ L++ E   L R +AG  V    +  V+  +A +C GLPLA+  VG AL+ +
Sbjct: 296 QATKILLNILNEQESWALFRSNAGATVDSPAVNVVATEIAKKCGGLPLALVAVGRALSDK 355

Query: 357 NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDY 416
           + D W  A  +L+  K   I+ +D D    + CLK S+DYL GE+ +S FLLC LFPED 
Sbjct: 356 DIDGWQEAAKQLKECKPMNIQDVDAD---FFSCLKLSFDYLQGEEIKSIFLLCCLFPEDR 412

Query: 417 KIDLEDLLGYAVGL-VWYQAESIEKARSLLRGTIKGLKDSSLLLDID-DDGFVKMHDIVR 474
            I+LE L   A+G  +    E++E+ R  +R  IKGLK S LL+D D   G +KMHD+VR
Sbjct: 413 NIELEYLTRLAMGQGLLEDVETVEEGRRRVRTLIKGLKASCLLMDGDKSKGSLKMHDLVR 472

Query: 475 DVAIWIGKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
             AI I   EK  F  K G+GL  W  +   E Y  ISL
Sbjct: 473 VFAISITSTEKYAFMVKAGVGLKNWPKKGTFEHYALISL 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735460|emb|CBI17900.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 292/521 (56%), Gaps = 20/521 (3%)

Query: 4   LAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRA 63
           +A    ++GE L  +       L  +   +K L D+   L+  +     R+         
Sbjct: 5   IASFVIQVGERLWSSATGPVSNLVNYRKNIKNLNDEVEKLEIIRS--DNRLSASAAQMNG 62

Query: 64  IDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLS 123
            +I+ +V+ WL      +  V+ L  ++   ++CF G CP+W  RY + ++A K+   + 
Sbjct: 63  EEIKGEVQMWLNKSDAVLRGVERLNGEVDMNRTCFGGCCPDWISRYKLSKQAKKDAHTVR 122

Query: 124 DLQDRGKFNTVALP--KPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHG 181
           +LQ  G+F  V+LP  + L  +  + +  F  +FE+TK A +++  ALK+    ++G++G
Sbjct: 123 ELQGTGRFERVSLPGRRQLGIESTLSLGDF-QAFESTKRAMDEVMVALKEDRVNIIGVYG 181

Query: 182 LGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEER 241
           +GGVGKTT+ K VG    ++ +F  V +A +SQ+PD+  +Q+++   L  +L+E+ E  R
Sbjct: 182 MGGVGKTTMVKQVGANAHRDGLFQHVAMAVISQNPDLRKIQAQIADMLNLKLEEESEAGR 241

Query: 242 ADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA-----NCC--KILLTTRLQQVCDR 294
           A RLR      +G+ +LIILDD+W+ +DL  +GIP+     + C  KILLTTRL+ VC  
Sbjct: 242 AARLRERI--MRGKSVLIILDDIWRRIDLSEIGIPSTGSDLDACKSKILLTTRLENVCHV 299

Query: 295 MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALT 354
           M    ++ L+ L + +   L    AG  V      +V++++  EC GLP+A+ VV  AL 
Sbjct: 300 MESQAKVPLNILSEQDSWTLFGRKAGRIVDSPDFHNVAQKIVKECGGLPIALVVVARALG 359

Query: 355 GRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPE 414
            ++ DEW  A  +L+   + K   +D D  GV+ C+K SYDYL G  ++ CFL+C LFPE
Sbjct: 360 DKDLDEWKEAARQLE---MSKPTNLDDDG-GVFKCIKLSYDYLKGNSTKPCFLICCLFPE 415

Query: 415 DYKIDLEDLLGYAVGLVWYQ-AESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIV 473
           D  I +EDL+ Y +G   +Q A +IE+AR   R  +K LK  SLLLD  ++G VKMHD+V
Sbjct: 416 DTDISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDVV 475

Query: 474 RDVAIWIGKVEK-KYFTSKVGIGLAEWAVEEGLEQYRGISL 513
           RD+AI +   E+   F  + G  L EW  ++  E Y  ISL
Sbjct: 476 RDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISL 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445915|ref|XP_002263288.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 292/521 (56%), Gaps = 20/521 (3%)

Query: 4   LAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRA 63
           +A    ++GE L  +       L  +   +K L D+   L+  +     R+         
Sbjct: 5   IASFVIQVGERLWSSATGPVSNLVNYRKNIKNLNDEVEKLEIIRS--DNRLSASAAQMNG 62

Query: 64  IDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLS 123
            +I+ +V+ WL      +  V+ L  ++   ++CF G CP+W  RY + ++A K+   + 
Sbjct: 63  EEIKGEVQMWLNKSDAVLRGVERLNGEVDMNRTCFGGCCPDWISRYKLSKQAKKDAHTVR 122

Query: 124 DLQDRGKFNTVALP--KPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHG 181
           +LQ  G+F  V+LP  + L  +  + +  F  +FE+TK A +++  ALK+    ++G++G
Sbjct: 123 ELQGTGRFERVSLPGRRQLGIESTLSLGDF-QAFESTKRAMDEVMVALKEDRVNIIGVYG 181

Query: 182 LGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEER 241
           +GGVGKTT+ K VG    ++ +F  V +A +SQ+PD+  +Q+++   L  +L+E+ E  R
Sbjct: 182 MGGVGKTTMVKQVGANAHRDGLFQHVAMAVISQNPDLRKIQAQIADMLNLKLEEESEAGR 241

Query: 242 ADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA-----NCC--KILLTTRLQQVCDR 294
           A RLR      +G+ +LIILDD+W+ +DL  +GIP+     + C  KILLTTRL+ VC  
Sbjct: 242 AARLRERI--MRGKSVLIILDDIWRRIDLSEIGIPSTGSDLDACKSKILLTTRLENVCHV 299

Query: 295 MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALT 354
           M    ++ L+ L + +   L    AG  V      +V++++  EC GLP+A+ VV  AL 
Sbjct: 300 MESQAKVPLNILSEQDSWTLFGRKAGRIVDSPDFHNVAQKIVKECGGLPIALVVVARALG 359

Query: 355 GRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPE 414
            ++ DEW  A  +L+   + K   +D D  GV+ C+K SYDYL G  ++ CFL+C LFPE
Sbjct: 360 DKDLDEWKEAARQLE---MSKPTNLDDDG-GVFKCIKLSYDYLKGNSTKPCFLICCLFPE 415

Query: 415 DYKIDLEDLLGYAVGLVWYQ-AESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIV 473
           D  I +EDL+ Y +G   +Q A +IE+AR   R  +K LK  SLLLD  ++G VKMHD+V
Sbjct: 416 DTDISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDVV 475

Query: 474 RDVAIWIGKVEK-KYFTSKVGIGLAEWAVEEGLEQYRGISL 513
           RD+AI +   E+   F  + G  L EW  ++  E Y  ISL
Sbjct: 476 RDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISL 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563923|ref|XP_002522961.1| Disease resistance protein RPH8A, putative [Ricinus communis] gi|223537773|gb|EEF39391.1| Disease resistance protein RPH8A, putative [Ricinus communis]

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 289/521 (55%), Gaps = 20/521 (3%)

Query: 6   GIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAID 65
            IA+K  E  V   +KQ RY+ C     +EL  +E  L  AQ  +  +VE+    + A D
Sbjct: 14  SIAAKYVEAGVKLAIKQFRYMCCLKKFEEELNQEENALAVAQATVQRKVEEGEDNNEAAD 73

Query: 66  IEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDL 125
             + VE W+    K M D   L+  I ++K CF+  CPN+ +RY   ++A   T  L +L
Sbjct: 74  --ESVEDWINRTNKAMEDAGLLQNSIKQEKRCFSNCCPNYFWRYNRSKEAEDLTVALKNL 131

Query: 126 -QDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGG 184
            Q++ +F   +  K  P + E  +   F   + ++SA + I +AL+     ++GLHG+ G
Sbjct: 132 KQEQSQFQNFS-HKSKPLNTEFILSNDFMVSKASESALDDIMKALETDGVSIIGLHGMAG 190

Query: 185 VGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADR 244
           +GKTTLA  V  Q   EK+F+E    TVSQ PDI  +Q ++   L  +      +ERA +
Sbjct: 191 IGKTTLAIKVKGQAEAEKLFEEFVKVTVSQKPDIKEIQEQMASQLRLKFDGDSIQERAGQ 250

Query: 245 LRLMFSESKGRKILIILDDVWKELDLETVGIP-ANCCKILLTTRLQQVCDRMGCDTRIKL 303
           L L   + K +  LI+LDD+W +L+L  +GI  +N CKIL+TTR  QVC  M C   I+L
Sbjct: 251 LLLRLQDKKRK--LIVLDDIWGKLNLTEIGIAHSNDCKILITTRGAQVCLSMDCQAVIEL 308

Query: 304 DALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADEWN 362
             L + E   L ++ A +    + L + +  VA++C  LP+AI  VG AL G+ +  +W 
Sbjct: 309 GLLTEEEAWALFKQSAHLKDDSSPLIEKAMIVAEKCHCLPIAIVSVGHALKGKLDPSDWQ 368

Query: 363 VALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLED 422
           +AL KLQ     KI G+++D   VY CL+ S+DYL  E ++   LLCSL+PEDY I  ED
Sbjct: 369 LALVKLQKYNYPKIRGVEEDE-NVYKCLQLSFDYLKSEATKRLLLLCSLYPEDYTIFAED 427

Query: 423 LLGYAVGLVWYQ-AESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIG 481
           L  YAVGL  ++ A SI++    +  ++  LKDS LLL+ + +G VKMHD+VR VAIWIG
Sbjct: 428 LARYAVGLRLFEDAGSIKEIMLEVLSSLNELKDSHLLLETEIEGHVKMHDLVRAVAIWIG 487

Query: 482 K---------VEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
           K         +EK+ F    GI L EW  +     +  ISL
Sbjct: 488 KKYVIIKDTNIEKE-FKMGSGIELKEWPSDGRFNGFAAISL 527

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735461|emb|CBI17901.3| unnamed protein product [Vitis vinifera]

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 186/518 (35%), Positives = 291/518 (56%), Gaps = 28/518 (5%)

Query: 11  LGELLVDATVKQARYLFCFNSIVKELEDKETNLK--EAQDGIHERVEQERQIHRAIDIEK 68
           +GE L  +       L  +   +K L D+   L+   + + + ER  Q        +I+ 
Sbjct: 12  VGERLWSSATGPVSNLVNYRKNIKNLNDEVEKLEIIRSDNRLSERAAQ----MNGEEIKG 67

Query: 69  DVEKWL--ADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQ 126
           +V+ WL  +D V+    V+ L  ++   ++CF G CP+W  RY + ++A K+   +  LQ
Sbjct: 68  EVQMWLNKSDAVRR--GVERLNGEVDMNRTCFGGCCPDWISRYKLSKQAKKDAHTVRGLQ 125

Query: 127 DRGKFNTVALP--KPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGG 184
             G+F  V+LP  + L  +  +    F  +FE+TK A +++  ALK+    ++G++G+GG
Sbjct: 126 GTGRFERVSLPGRRQLGIESTLSFGDF-QAFESTKRAMDEVMVALKEDRVNIIGVYGMGG 184

Query: 185 VGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADR 244
           VGKTT+ K VG    ++ +F  V +A +SQ+PD+  +Q+++   L  +L+E+ E  RA R
Sbjct: 185 VGKTTMVKQVGANAHRDGLFQHVAMAVISQNPDLRKIQAQIADMLNLKLEEESEAGRAAR 244

Query: 245 LRLMFSESKGRKILIILDDVWKELDLETVGIPA-----NCC--KILLTTRLQQVCDRMGC 297
           LR      +G+ +LIILDD+W+ +DL  +GIP+     + C  KILLTTRL+ VC  M  
Sbjct: 245 LRERI--MRGKSVLIILDDIWRRIDLSEIGIPSTGSDLDACKSKILLTTRLENVCHVMES 302

Query: 298 DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRN 357
             ++ L+ L + +   L    AG  V      +V++++  EC GLP+A+ VV  AL  ++
Sbjct: 303 QAKVPLNILSEQDSWTLFGRKAGRVVDSPDFHNVAQKIVKECGGLPIALVVVARALGDKD 362

Query: 358 ADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYK 417
            DEW  A  +L+   + K   +D D  GV+ C+K SYDYL G  ++ CFL+C LFPED  
Sbjct: 363 LDEWKEAARQLE---MSKPTNLDDDG-GVFKCIKLSYDYLKGNSTKPCFLICCLFPEDTD 418

Query: 418 IDLEDLLGYAVGLVWYQ-AESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDV 476
           I +EDL+ Y +G   +Q A +IE+AR   R  +K LK  SLLLD  ++G VKMHD+VRD+
Sbjct: 419 ISIEDLVKYGLGQGLFQEANTIEEARGRARSVVKYLKACSLLLDSTEEGGVKMHDVVRDM 478

Query: 477 AIWIGKVE-KKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
           AI +   E    F  + G  L  W  ++  E Y  ISL
Sbjct: 479 AILLVSSEDNNAFMVQSGSALKVWPTKDSYEAYTAISL 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459805|ref|XP_003600183.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355489231|gb|AES70434.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 292/521 (56%), Gaps = 33/521 (6%)

Query: 1   MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQI 60
           + I+A +A  L E LV   +++ +Y  C N ++++LE++  +L   +D +  RV+Q ++ 
Sbjct: 6   ISIVAKLAECLAECLVKPVIREGKYFLCVNKVIRDLENEREDLISERDNLLCRVKQAKE- 64

Query: 61  HRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETR 120
            R   IEK VEKWL +V   + +V+ LK ++     CF    P W  RY + ++  K+ +
Sbjct: 65  -RTEIIEKPVEKWLDEVKSLLEEVEALKQRMRTNTRCFQRDFPTWR-RYRLSKQMVKKAQ 122

Query: 121 KLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLH 180
            +  L+ +      +   PLP  +  +    F+ F++TK A NQ+ E L+     M+G++
Sbjct: 123 AMERLKGKSNIQPFSHLAPLPGIQYQYSSENFTCFQSTKVAYNQLLELLRDDCIHMIGVY 182

Query: 181 GLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEE 240
           G+GG GKTTLA  VG +  +  +FD+V + TVSQ P++  +Q ++   L  +L E+DE+E
Sbjct: 183 GMGGCGKTTLATEVGKKAEESNMFDKVILITVSQTPNVRKIQGKMAALLNLKLSEEDEDE 242

Query: 241 RADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCC-----KILLTTRLQQVCDRM 295
           RA                  LDD+WK+ +L ++GI  +       KIL+TTR +QVC  M
Sbjct: 243 RAQ-----------------LDDLWKKFNLTSIGIRIDSVNKGAWKILVTTRNRQVCTSM 285

Query: 296 GCDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADECKGLPLAIKVVGSALT 354
            C   I L  L + E   L ++HA I D    +L  V   + ++CKGLPLAI  V S+L 
Sbjct: 286 NCQKIINLGLLSENESWTLFQKHADITDEFSKSLGGVPHELCNKCKGLPLAIVTVASSLK 345

Query: 355 GRNADEWNVALDKLQNAKL--DKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLF 412
           G++  EW+VAL KL+N+    D  EG+ +D+L    CL+ SY YL  +++   FL+CS+F
Sbjct: 346 GKHKSEWDVALYKLRNSAEFDDHDEGV-RDAL---SCLELSYTYLQNKEAELLFLMCSMF 401

Query: 413 PEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDI 472
           PEDY I +EDL+ YA+GL       ++ +R L++  I  L +S LL+  +D   VKMHD+
Sbjct: 402 PEDYNISIEDLIIYAIGLGVGGRHPLKISRILIQVAIDKLVESCLLMPAEDMECVKMHDL 461

Query: 473 VRDVAIWIGK-VEKKYFTSKVGIGLAEWAVEEGLEQYRGIS 512
           VR+VA+WI K  E +     V   L   A ++ ++ Y  +S
Sbjct: 462 VREVALWIAKRSEDRKILVNVDKPLNTLAGDDSIQNYFAVS 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.920	0.527	0.3	2.8e-51
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.947	0.549	0.294	6.9e-50
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.925	0.534	0.297	2.5e-49
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.962	0.501	0.296	4.6e-48
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.869	0.461	0.294	1.9e-47
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.888	0.507	0.284	1.4e-46
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.939	0.566	0.304	2.3e-46
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.923	0.531	0.290	6e-46
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.824	0.483	0.288	6.7e-45
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.881	0.509	0.295	9.2e-45

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 2.8e-51, P = 2.8e-51
 Identities = 150/500 (30%), Positives = 252/500 (50%)

Query:    31 SIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADV-VKEMADVQTLKT 89
             ++V   +D E  LK+ +D +  RV+ E    R   + + V+ WL +V   E    + L T
Sbjct:    35 NVVAMKKDMEV-LKKKRDDVKRRVDIEEFTRRRERLSQ-VQGWLTNVSTVENKFNELLTT 92

Query:    90 KIAE-KKSCFNGWCP-NWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMH 147
               AE ++ C  G+C  N    Y  G++     +++  L  +G F+TV L  P+   +EM 
Sbjct:    93 NDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLKEIESLSSQGDFDTVTLATPIARIEEMP 152

Query:   148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDE 206
             I       ET      ++   L +   ++VGL+G+GGVGKTTL   + N+  ++   F  
Sbjct:   153 IQPTIVGQETM---LERVWTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFSEKCSGFGV 209

Query:   207 VGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWK 266
             V    VS+ PDI  +Q ++ K L    +E D      R   +++    +K +++LDD+W+
Sbjct:   210 VIWVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVNENQRALDIYNVLGKQKFVLLLDDIWE 269

Query:   267 ELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHAGID 322
             +++LE +G+P     N CK++ TTR + VC RM  D  +++  L+  E  +L +   G +
Sbjct:   270 KVNLEVLGVPYPSRQNGCKVVFTTRSRDVCGRMRVDDPMEVSCLEPNEAWELFQMKVGEN 329

Query:   323 V--ADTTLTDVSKRVADECKGLPLAIKVVGSALT-GRNADEWNVALDKLQNAKLDKIEGI 379
                    + +++++VA +C GLPLA+ V+G  +   R   EW  A+D L +   +   G+
Sbjct:   330 TLKGHPDIPELARKVAGKCCGLPLALNVIGETMACKRMVQEWRNAIDVLSSYAAE-FPGM 388

Query:   380 DKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIE 439
             ++    +   LK+SYD LN E  + CFL CSLFPEDY+++ E L+ Y +    +  E+  
Sbjct:   389 EQ----ILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWI-CEGFIDENES 443

Query:   440 KARSLLRGTXXXXXXXXX---XXXXXXXXFVKMHDIVRDVAIWIGK---VEKKYFTSKVG 493
             + R+L +G                      VKMHD+VR++A+WI       K+    +VG
Sbjct:   444 RERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVG 503

Query:   494 IGLAEWAVEEGLEQYRGISL 513
             +GL E    +     R +SL
Sbjct:   504 VGLREVPKVKNWSSVRRMSL 523

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 6.9e-50, P = 6.9e-50
 Identities = 156/529 (29%), Positives = 266/529 (50%)

Query:    14 LLVDATVKQARYLFCFN-SIVKELEDKETNLKEA-------QDGIHERVEQERQI-HRAI 64
             L  D  V Q     C + S ++ L +   +L++A       +D +  R+ +E    HR  
Sbjct:     9 LSCDREVNQFSQWLCVSGSYIQNLSENLASLQKAMGVLNAKRDDVQGRINREEFTGHRRR 68

Query:    65 DIEKDVEKWLADVVK-EMADVQTLKTKIAE-KKSCFNGWCP-NWGFRYWMGRKASKETRK 121
               +  V+ WL  +   E      L T  AE ++ C  G+C  N    Y  G++     R+
Sbjct:    69 LAQ--VQVWLTRIQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLRE 126

Query:   122 LSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHG 181
             +  L  +G F+ V    P+   +E+ I    S+     S  +++   L +    +VGL+G
Sbjct:   127 VEGLSSQGVFDIVTEAAPIAEVEELPIQ---STIVGQDSMLDKVWNCLMEDKVWIVGLYG 183

Query:   182 LGGVGKTTLAKFVGNQLRQ-EKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEE 240
             +GGVGKTTL   + N+  +    FD V    VS++  +  +Q  + + LG   K  DE+ 
Sbjct:   184 MGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSIGEKLGLVGKNWDEKN 243

Query:   241 RADRLRLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMG 296
             +  R   + +  + +K +++LDD+W++++L+ +G+P     N CK+  TT  ++VC RMG
Sbjct:   244 KNQRALDIHNVLRRKKFVLLLDDIWEKVELKVIGVPYPSGENGCKVAFTTHSKEVCGRMG 303

Query:   297 CDTRIKLDALDQAEGLDLLREHAGIDVADT--TLTDVSKRVADECKGLPLAIKVVGSALT 354
              D  +++  LD     DLL++  G +   +   +  ++++V+++C GLPLA+ V+G  ++
Sbjct:   304 VDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETMS 363

Query:   355 -GRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFP 413
               R   EW  A + L +A      G++ + L +   LK+SYD LNGED++SCFL CSLFP
Sbjct:   364 FKRTIQEWRHATEVLTSAT--DFSGMEDEILPI---LKYSYDSLNGEDAKSCFLYCSLFP 418

Query:   414 EDYKIDLEDLLGYAV--GLVWYQAESIEKARSL---LRGTXXXXXXXXXXXXXXXXXFVK 468
             ED++I  E L+ Y +  G +  + +  EKA +    + GT                  V 
Sbjct:   419 EDFEIRKEMLIEYWICEGFI-KEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDV--VS 475

Query:   469 MHDIVRDVAIWI----GKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
             MHD+VR++A+WI    GK +++    + GIGL E    E     + +SL
Sbjct:   476 MHDMVREMALWIFSDLGKHKERCIV-QAGIGLDELPEVENWRAVKRMSL 523

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 152/511 (29%), Positives = 254/511 (49%)

Query:    25 YLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADV 84
             Y+   +  +  L+     LK  Q  +  R+E E    R   + + V+ WL  V+      
Sbjct:    28 YIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTGRQQRLSQ-VQVWLTSVLIIQNQF 86

Query:    85 QTL--KTKIAEKKSCFNGWCP-NWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLP 141
               L    ++  ++ C  G+C  +    Y  G++     +++  L  +G F+ V+   P  
Sbjct:    87 NDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMMLKEVESLSSQGFFDVVSEATPFA 146

Query:   142 SDKEMHI-PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200
                E+   P         + A N++ E    GS  ++GL+G+GGVGKTTL   + N+  +
Sbjct:   147 DVDEIPFQPTIVGQEIMLEKAWNRLME---DGSG-ILGLYGMGGVGKTTLLTKINNKFSK 202

Query:   201 -EKIFDEVGIATVSQDPDIINVQSELVKWLG---WELKEKDEEERADRLRLMFSESKGRK 256
              +  FD V    VS+   +  +Q ++ + +G    E  EK++ + A  +  +    + RK
Sbjct:   203 IDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWSEKNDNQIAVDIHNVL---RRRK 259

Query:   257 ILIILDDVWKELDLETVGIPA----NCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGL 312
              +++LDD+W++++L+ VG+P     N CK+  TTR + VC RMG D  +++  L   E  
Sbjct:   260 FVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESW 319

Query:   313 DLLREHAGIDVADT--TLTDVSKRVADECKGLPLAIKVVGSALT-GRNADEWNVALDKLQ 369
             DL +   G +   +   +  ++++VA +C+GLPLA+ V+G A+   R   EW  A+D L 
Sbjct:   320 DLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLT 379

Query:   370 NAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVG 429
             ++ +D   G++ + L V   LK+SYD LNGE  +SCFL CSLFPEDY ID E L+ Y + 
Sbjct:   380 SSAID-FSGMEDEILHV---LKYSYDNLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWIS 435

Query:   430 LVWYQAESIEKARSLLRGTXXXXXXXXX---XXXXXXXXFVKMHDIVRDVAIWI----GK 482
               +   E   + R++ +G                      VKMHD+VR++A+WI    GK
Sbjct:   436 EGFIN-EKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLGK 494

Query:   483 VEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
              ++K    + G+GL E    +     R ISL
Sbjct:   495 QKEKCIV-RAGVGLREVPKVKDWNTVRKISL 524

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 4.6e-48, P = 4.6e-48
 Identities = 156/527 (29%), Positives = 259/527 (49%)

Query:     1 MEILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQI 60
             ME  A +  ++  L+ ++T  +      F S VK L +    L E +  + E  + E  +
Sbjct:     1 MECCAPVIGEILRLMYESTFSRVANAIKFKSNVKALNESLERLTELKGNMSE--DHETLL 58

Query:    61 HRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETR 120
              +   +   + +W  +  +E+  +   + K+ E+ SC          R  M RK  K   
Sbjct:    59 TKDKPLRLKLMRWQREA-EEV--ISKARLKLEERVSC------GMSLRPRMSRKLVKILD 109

Query:   121 KLSDLQDRG-KFNTVALPKPLPSDKEMHIPRFFSSFETTKS-ACNQITEALKKGSTKMVG 178
             ++  L+  G +F  +   +  P   E H+P      +T  S    +I + L     + +G
Sbjct:   110 EVKMLEKDGIEFVDMLSVESTPERVE-HVPGVSVVHQTMASNMLAKIRDGLTSEKAQKIG 168

Query:   179 LHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT---VSQDPDIINVQSELVKWLGWELKE 235
             + G+GGVGKTTL + + N+LR+E      G+     VS++ D   VQ ++ + L  + + 
Sbjct:   169 VWGMGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQKQIAERLDIDTQM 228

Query:   236 KDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN----CCKILLTTRLQQV 291
             ++ EE+  R R+     K RK L+ILDDVWK +DL+ +GIP        K++LT+R  +V
Sbjct:   229 EESEEKLAR-RIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSRFLEV 287

Query:   292 CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS 351
             C  M  D  +++D L + +  +L  ++AG  V    +  ++K V+ EC GLPLAI  VG+
Sbjct:   288 CRSMKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGT 347

Query:   352 ALTGR-NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCS 410
             A+ G+ N   WN  L KL  + +  I+ I++    ++  LK SYD+L  + ++ CFLLC+
Sbjct:   348 AMRGKKNVKLWNHVLSKLSKS-VPWIKSIEEK---IFQPLKLSYDFLE-DKAKFCFLLCA 402

Query:   411 LFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRG--TXXXXXXXXXXXXXXXXXFVK 468
             LFPEDY I++ +++ Y +    +  E   +  S+  G  T                  VK
Sbjct:   403 LFPEDYSIEVTEVVRYWMA-EGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVK 461

Query:   469 MHDIVRDVAIWIGKVEKKYFTSKV--GIGLAEWAVEEGLEQYRGISL 513
             MHD+VRD AIWI    +    S V  G GL +   ++     R +SL
Sbjct:   462 MHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSL 508

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 1.9e-47, P = 1.9e-47
 Identities = 145/493 (29%), Positives = 251/493 (50%)

Query:    31 SIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVK---EMADVQTL 87
             ++ +E+ED    L+  Q  +  +V +E   H+   +E  V+ WL  V     E  D+ ++
Sbjct:    37 ALQREMED----LRATQHEVQNKVAREESRHQQ-RLEA-VQVWLDRVNSIDIECKDLLSV 90

Query:    88 KTKIAEKKSCFNGWCPNWGFR-YWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEM 146
              + +  +K C  G C  +    Y  G++      +++ L+  G F+ V+ P P    +E 
Sbjct:    91 -SPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFDEVSQPPPRSEVEER 149

Query:   147 HIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IFD 205
                      E  K A N++ E        ++GLHG+GGVGKTTL K + N+  +    FD
Sbjct:   150 PTQPTIGQEEMLKKAWNRLME----DGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFD 205

Query:   206 EVGIATVSQDPDIINVQSELVKWLGW--EL-KEKDEEERADRLRLMFSESKGRKILIILD 262
              V    VSQ   +  +Q ++ + L    +L K K+E ++A  +  +    KG++ +++LD
Sbjct:   206 IVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVL---KGKRFVLMLD 262

Query:   263 DVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREH 318
             D+W+++DLE +GIP     N CK+  TTR Q+VC +MG    +++  L+  +  +L +  
Sbjct:   263 DIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKNK 322

Query:   319 AGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRN-ADEWNVALDKLQNAKLDK 375
              G +   +D  +  +++ VA +C+GLPLA+  +G  +  +    EW  A+D L  +  + 
Sbjct:   323 VGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAEF 382

Query:   376 IEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAV--GLVWY 433
              +  +K    +   LK+SYD L  E  +SCFL C+LFPED KID + L+   +  G +  
Sbjct:   383 SDMQNK----ILPILKYSYDSLEDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIG- 437

Query:   434 QAESIEKARSLLRGTXXXXXXXXXXXXXXXXXFVK----MHDIVRDVAIWI----GKVEK 485
             + + I++AR+  +G                  FVK    MHD+VR++A+WI    GK +K
Sbjct:   438 EDQVIKRARN--KGYEMLGTLIRANLLTNDRGFVKWHVVMHDVVREMALWIASDFGK-QK 494

Query:   486 KYFTSKVGIGLAE 498
             + +  +  +GL E
Sbjct:   495 ENYVVRARVGLHE 507

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 141/496 (28%), Positives = 249/496 (50%)

Query:    25 YLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVK---EM 81
             Y+      ++ L+ +  +L+  Q  +  +V ++   H+   +E  V+ WL  V     E 
Sbjct:    26 YIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQR-RLEA-VQVWLDRVNSVDIEC 83

Query:    82 ADVQTLKTKIAEKKSCFNGWCPNWGFR-YWMGRKASKETRKLSDLQDRGKFNTVALPKPL 140
              D+ ++ T +  +K C  G C  +    Y  G+K      ++  L   G F+ V+ P P 
Sbjct:    84 KDLLSV-TPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKLNSEGNFDEVSQPPPR 142

Query:   141 PSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200
                +E          +  + A N++ E        ++GLHG+GGVGKTTL K + N+  +
Sbjct:   143 SEVEERPTQPTIGQEDMLEKAWNRLME----DGVGIMGLHGMGGVGKTTLFKKIHNKFAE 198

Query:   201 -EKIFDEVGIATVSQDPDIINVQSELVKWLGW--EL-KEKDEEERADRLRLMFSESKGRK 256
                 FD V    VS+   I  +Q ++ + L    +L K K+E ++A  +  +    KG++
Sbjct:   199 IGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVL---KGKR 255

Query:   257 ILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGL 312
              +++LDD+W+++DLE +GIP     N CK+  TTR ++VC  MG    ++++ L+  +  
Sbjct:   256 FVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPMQVNCLEPEDAW 315

Query:   313 DLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRN-ADEWNVALDKLQ 369
             +L +   G +   +D  + ++++ VA +C+GLPLA+ V+G  ++ +    EW  A+    
Sbjct:   316 ELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVF- 374

Query:   370 NAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAV- 428
             N    +   +    L +   LK+SYD L  E  +SCFL C+LFPED +I  E L+ Y + 
Sbjct:   375 NTSAAEFSDMQNKILPI---LKYSYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDYWIC 431

Query:   429 -GLVWYQAESIEKARSLLRG-TXXXXXXXXXXXXXXXXXFVKMHDIVRDVAIWI----GK 482
              G +  + + I++AR+  +G                   +  MHD+VR++A+WI    GK
Sbjct:   432 EGFIG-EDQVIKRARN--KGYAMLGTLTRANLLTKVGTYYCVMHDVVREMALWIASDFGK 488

Query:   483 VEKKYFTSKVGIGLAE 498
              +K+ F  + G+GL E
Sbjct:   489 -QKENFVVQAGVGLHE 503

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 162/532 (30%), Positives = 260/532 (48%)

Query:    13 ELLVDATVKQA-RYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKD-- 69
             E+  D T+  A   LF   + + ++E    NL+  Q+ + E  E+   + R + IE+D  
Sbjct:     8 EISCDQTLNHACGCLFGDRNYILKME---ANLEALQNTMQELEERRDDLLRRVVIEEDKG 64

Query:    70 ------VEKWLA---DVVKEMADVQTLKTK-IAEKKSCFNGWCP-NW--GFRYWMGRKAS 116
                   V+ WL+   DV  ++ D+  LK K I  ++ C  G+C  N+  G  Y  G    
Sbjct:    65 LQRLAQVQGWLSRVKDVCSQVNDL--LKAKSIQTERLCLCGYCSKNFISGRNY--GINVL 120

Query:   117 KETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKM 176
             K+ + +  L  +G F  VA   P P  ++ HI            A N    +L K   + 
Sbjct:   121 KKLKHVEGLLAKGVFEVVAEKIPAPKVEKKHIQTTVGLDAMVGRAWN----SLMKDERRT 176

Query:   177 VGLHGLGGVGKTTLAKFVGNQ-LRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWEL-- 233
             +GL+G+GGVGKTTL   + N+ L     FD V    VS+D     +Q +++  LG     
Sbjct:   177 LGLYGMGGVGKTTLLASINNKFLEGMNGFDLVIWVVVSKDLQNEGIQEQILGRLGLHRGW 236

Query:   234 KEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA----NCCKILLTTRLQ 289
             K+  E+E+A  +  + +    +K +++LDD+W E+DLE +G+P     N  KI+ TTR +
Sbjct:   237 KQVTEKEKASYICNILNV---KKFVLLLDDLWSEVDLEKIGVPPLTRENGSKIVFTTRSK 293

Query:   290 QVCDRMGCDTRIKLDALDQAEGLDLLREHAG-IDV-ADTTLTDVSKRVADECKGLPLAIK 347
              VC  M  D  +K+D L   E  +L ++  G I + +   +  ++++VA++C GLPLA+ 
Sbjct:   294 DVCRDMEVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALS 353

Query:   348 VVGSALTGRNA-DEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCF 406
             V+G A+  R    EW   +  L N+   +   +++  L V   LKFSYD L  E  + CF
Sbjct:   354 VIGKAMASRETVQEWQHVIHVL-NSSSHEFPSMEEKILPV---LKFSYDDLKDEKVKLCF 409

Query:   407 LLCSLFPEDYKIDLEDLLGYAVGLVWYQA-ESIEKARSLLRGTXXXXXXXXXXXXXXXXX 465
             L CSLFPEDY++  E+L+ Y +   +    E  + A +                      
Sbjct:   410 LYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHLLMDGELTT 469

Query:   466 FVKMHDIVRDVAIWI----GKVEKKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
              VKMHD++R++A+WI    GK +K+    K G+ L     +   E  R +SL
Sbjct:   470 KVKMHDVIREMALWIASNFGK-QKETLCVKPGVQLCHIPKDINWESLRRMSL 520

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 6.0e-46, P = 6.0e-46
 Identities = 148/509 (29%), Positives = 255/509 (50%)

Query:    25 YLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWL--ADVVK-EM 81
             Y+      +  LE    +L   +D +  RV+ E    + ++  + V+ WL   ++++ + 
Sbjct:    28 YIHKLKDNIVALEKAIEDLTATRDDVLRRVQMEEG--KGLERLQQVQVWLKRVEIIRNQF 85

Query:    82 ADVQTLKTKIAEKKSCFNGWCP-NWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPL 140
              D+ + +  I  ++ CF   C  N    Y  G++     +++ +L   G F  VA P P 
Sbjct:    86 YDLLSARN-IEIQRLCFYSNCSTNLSSSYTYGQRVFLMIKEVENLNSNGFFEIVAAPAPK 144

Query:   141 PSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ 200
                + +  P         + A N++ +    G   M GL+G+GGVGKTTL   + N L  
Sbjct:   145 LEMRPIQ-PTIMGRETIFQRAWNRLMD---DGVGTM-GLYGMGGVGKTTLLTQIHNTLHD 199

Query:   201 EKIFDEVGI-ATVSQDPDIINVQSELVKWLGWELKEKDEEERADR-LRLMFSESKGRKIL 258
              K   ++ I   VS D  I  +Q ++ + LG+  KE ++++ + + + ++   SK R +L
Sbjct:   200 TKNGVDIVIWVVVSSDLQIHKIQEDIGEKLGFIGKEWNKKQESQKAVDILNCLSKKRFVL 259

Query:   259 IILDDVWKELDLETVGIPA----NCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDL 314
             + LDD+WK++DL  +GIP+    N CK++ TTR   VC RMG    +++  L   +  +L
Sbjct:   260 L-LDDIWKKVDLTKIGIPSQTRENKCKVVFTTRSLDVCARMGVHDPMEVQCLSTNDAWEL 318

Query:   315 LREHAG-IDVAD-TTLTDVSKRVADECKGLPLAIKVVGSALTGRNA-DEWNVALDKLQNA 371
              +E  G I +     + +++K+VA +C+GLPLA+ V+G  + G+ A  EW+ A+D L + 
Sbjct:   319 FQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGKRAVQEWHHAVDVLTSY 378

Query:   372 KLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLV 431
               +   G+D   L +   LK+SYD LN +  RSCF  C+L+PEDY I    L+ Y +   
Sbjct:   379 AAE-FSGMDDHILLI---LKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEG 434

Query:   432 WYQAESIEKARSLLRGTXXXXXXXXX---XXXXXXXXFVKMHDIVRDVAIW----IGKVE 484
             +    +I K R++ +G                      VKMHD+VR++A+W    +GK +
Sbjct:   435 FIDG-NIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNK 493

Query:   485 KKYFTSKVGIGLAEWAVEEGLEQYRGISL 513
             ++    + G GL +    E     R +SL
Sbjct:   494 ERCIV-QAGSGLRKVPKVEDWGAVRRLSL 521

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 6.7e-45, P = 6.7e-45
 Identities = 134/464 (28%), Positives = 234/464 (50%)

Query:    33 VKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIA 92
             V  L+     L+  +D + +R++ +    R +++  +V++WL++V   + +   + ++  
Sbjct:    36 VAALKKTVRQLEARRDDLLKRIKVQED--RGLNLLDEVQQWLSEVESRVCEAHDILSQSD 93

Query:    93 EK--KSCFNGWCPN-WGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIP 149
             E+    C   +C     + Y   +    + + + +L  +G F+ VA   P+P  +E    
Sbjct:    94 EEIDNLCCGQYCSKRCKYSYDYSKSVINKLQDVENLLSKGVFDEVAQKGPIPKVEE---- 149

Query:   150 RFFSSFETTKSACNQIT-EALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-EKIFDEV 207
             R F      + A  + T  ++ +    ++G++G+GGVGKTTL   + N+ R     FD  
Sbjct:   150 RLFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTTLLSQINNKFRTVSNDFDIA 209

Query:   208 GIATVSQDPDIINVQSELVKWL-----GWELKEKDEEERADRLRLMFSESKGRKILIILD 262
                 VS++P +  +Q ++ K L     GWE  +K E E A  ++    E+K  K +++LD
Sbjct:   210 IWVVVSKNPTVKRIQEDIGKRLDLYNEGWE--QKTENEIASTIKRSL-ENK--KYMLLLD 264

Query:   263 DVWKELDLETVGIPA---NCCKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLLREHA 319
             D+W ++DL  +GIP    N  KI  T+R  +VC +MG D  I++  L   +  DL   + 
Sbjct:   265 DMWTKVDLANIGIPVPKRNGSKIAFTSRSNEVCGKMGVDKEIEVTCLMWDDAWDLFTRNM 324

Query:   320 GIDV-ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNA-DEWNVALDKLQNAKLDKIE 377
                + +   + +V+K +A +C GLPLA+ V+G  +  + + +EW+ A+            
Sbjct:   325 KETLESHPKIPEVAKSIARKCNGLPLALNVIGETMARKKSIEEWHDAVGVFS-------- 376

Query:   378 GIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGL-VWYQAE 436
             GI+ D L +   LKFSYD L  E ++SCFL  +LFPEDY+I  +DL+ Y VG  +   ++
Sbjct:   377 GIEADILSI---LKFSYDDLKCEKTKSCFLFSALFPEDYEIGKDDLIEYWVGQGIILGSK 433

Query:   437 SIEKARSLLRGTXXXXXXXXXXXXXXXXXFVKMHDIVRDVAIWI 480
              I      + GT                  VKMHD+VR++A+WI
Sbjct:   434 GINYKGYTIIGTLTRAYLLKESETKEK---VKMHDVVREMALWI 474

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 9.2e-45, P = 9.2e-45
 Identities = 146/494 (29%), Positives = 244/494 (49%)

Query:    28 CFN---SIVKELEDKETNLKEAQDGIHERVEQE-RQI----HRAIDIEKDVEKWLADVVK 79
             C N     +  LE+  T L+ A + I +R E   R+I     R +     V+ W++ V  
Sbjct:    21 CLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVEA 80

Query:    80 EMADVQTL--KTKIAEKKSCFNGWCP-NWGFRYWMGRKASKETRKLSDLQDRGKFNTVAL 136
              +  V  L     +  ++ C  G+C  N    Y  G++  K   ++  L+ +G F  VA 
Sbjct:    81 IVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFAVVAE 140

Query:   137 PKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGN 196
                    +E       +     +SA N++ E        ++GLHG+GGVGKTTL   + N
Sbjct:   141 RVDAARVEERPTRPMVAMDPMLESAWNRLME----DEIGILGLHGMGGVGKTTLLSHINN 196

Query:   197 QL-RQEKIFDEVGIATVSQDPDIINVQSELVKWL---GWELKEKDEEERADRLRLMFSES 252
             +  R    FD V    VS++  I  +Q E+ + L     + K+K E+ +A  +   ++  
Sbjct:   197 RFSRVGGEFDIVIWIVVSKELQIQRIQDEIWEKLRSDNEKWKQKTEDIKASNI---YNVL 253

Query:   253 KGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRLQQVCDRMGCDTRIKLDALDQ 308
             K ++ +++LDD+W ++DL  VG+P     N CKI+ TTRL+++C RMG D+ +++  L  
Sbjct:   254 KHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAP 313

Query:   309 AEGLDLLREHAG-IDVAD-TTLTDVSKRVADECKGLPLAIKVVGSALT-GRNADEWNVAL 365
              +  DL  +  G I +     +  V++ VA +C+GLPLA+ V+G  +   R   EW  A+
Sbjct:   314 DDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAI 373

Query:   366 DKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLG 425
             D L ++  +   G++ + L +   LK+SYD L  E  + CF  C+LFPED+ I+  DL+ 
Sbjct:   374 DVLTSSAAE-FSGMEDEILPI---LKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVD 429

Query:   426 YAVGLVWYQAESIEKARSLLRGTXXXXXXXXX-XXXXXXXXFVKMHDIVRDVAIWI---- 480
             Y +G  +       K ++  +G                    VKMHD+VR++A+WI    
Sbjct:   430 YWIGEGFIDRN---KGKAENQGYEIIGILVRSCLLMEENQETVKMHDVVREMALWIASDF 486

Query:   481 GKVEKKYFTSKVGI 494
             GK +K+ F  + G+
Sbjct:   487 GK-QKENFIVQAGL 499

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_216000017 cc-nbs-lrr resistance protein (1078 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	2e-46
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-09
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-04
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	0.002

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  163 bits (414), Expect = 2e-46
 Identities = 87/275 (31%), Positives = 142/275 (51%), Gaps = 20/275 (7%)

Query: 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLG---W 231
            +VG+ G+GGVGKTTLAK + N       FD V    VS+      +Q ++++ LG    
Sbjct: 20  GVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDS 79

Query: 232 ELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA----NCCKILLTTR 287
           +  EK+E E A +++        ++ L++LDDVW++ D + +G+P     N  ++++TTR
Sbjct: 80  DWVEKNESELAVKIKEAL---LRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTR 136

Query: 288 LQQVCDRMGC-DTRIKLDALDQAEGLDLLREHAG--IDVADTTLTDVSKRVADECKGLPL 344
            + V  RMG      ++++L+  E  +L               L +V+K + ++CKGLPL
Sbjct: 137 SESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPL 196

Query: 345 AIKVVGSALTGRN-ADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSR 403
           A+KV+G  L  ++   EW   L++L N +L   +G++     V   L  SYD L     +
Sbjct: 197 ALKVLGGLLAFKSTVQEWEHVLEQLNN-ELAGRDGLN----EVLSILSLSYDNLP-MHLK 250

Query: 404 SCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESI 438
            CFL  +LFPEDY I  E L+   +   +     I
Sbjct: 251 RCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPSDI 285

Length = 285

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 25/252 (9%)

Query: 169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR---QEKIF-DEVGIATV-----SQDPDII 219
           L+    +MVG+ G  G+GKTT+A+ + ++L    Q  +F D   I+       S +PD  
Sbjct: 202 LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261

Query: 220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANC 279
           N++  L +    E+ +K ++ +   L  M    K RK+LI +DD+  +  L+ +      
Sbjct: 262 NMKLHLQRAFLSEILDK-KDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQW 320

Query: 280 ----CKILLTTRLQQVCDRMGCDTRIKLDALDQAEGLDLL-REHAGIDVADTTLTDVSKR 334
                +I++ T+ +      G D   ++        L++  R     +       +++  
Sbjct: 321 FGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASE 380

Query: 335 VADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSY 394
           VA     LPL + V+GS L GR+ ++W   L +L+N    KIE            L+ SY
Sbjct: 381 VALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKT----------LRVSY 430

Query: 395 DYLNGEDSRSCF 406
           D LN +  ++ F
Sbjct: 431 DGLNNKKDKAIF 442

syringae 6; Provisional. Length = 1153

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK 234
           +++ + G  G GKTTLA+ +  +L         G   +  D + I  +      L     
Sbjct: 3   EVILIVGPPGSGKTTLARALARELGPP------GGGVIYIDGEDILEEVLDQLLLIIVGG 56

Query: 235 EKDEEERADRLRLMFSE-SKGRKILIILDDVWKELDLET 272
           +K       RLRL  +   K +  ++ILD++   LD E 
Sbjct: 57  KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQ 95

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 163 NQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII 219
            ++ +AL++   G    V L G  G GKT+L + +   L       +   A  +      
Sbjct: 10  ERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLL--VAAGKCDQAERNPPYAFS 67

Query: 220 NVQSELVKWLGWELKEKDEEERADRLRLMFS----------------ESKGRKILIILDD 263
               EL++ L  EL  +    R   L  + +                 ++ R ++++LDD
Sbjct: 68  QALRELLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELLERLLARARPLVLVLDD 127

Query: 264 V 264
           +
Sbjct: 128 L 128

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PRK04841	903	transcriptional regulator MalT; Provisional	99.62
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.44
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.4
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.33
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.32
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.24
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.22
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.21
PF05729	166	NACHT: NACHT domain	99.19
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.1
COG0488	530	Uup ATPase components of ABC transporters with dup	99.04
COG3899	849	Predicted ATPase [General function prediction only	99.01
PRK13342	413	recombination factor protein RarA; Reviewed	99.0
PRK06893	229	DNA replication initiation factor; Validated	98.91
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.83
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.77
PRK04195	482	replication factor C large subunit; Provisional	98.76
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.75
KOG2028	554	consensus ATPase related to the helicase subunit o	98.74
PRK12402	337	replication factor C small subunit 2; Reviewed	98.73
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.72
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.72
PLN03025	319	replication factor C subunit; Provisional	98.72
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.7
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.68
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.68
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.68
PRK08084	235	DNA replication initiation factor; Provisional	98.65
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.65
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.65
PTZ00202	550	tuzin; Provisional	98.65
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.63
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.62
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.62
cd01128	249	rho_factor Transcription termination factor rho is	98.62
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.61
PRK08727	233	hypothetical protein; Validated	98.61
COG3903	414	Predicted ATPase [General function prediction only	98.6
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.59
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.58
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.58
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.58
PF14516	331	AAA_35: AAA-like domain	98.57
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.57
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.56
COG0488	530	Uup ATPase components of ABC transporters with dup	98.56
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.53
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.53
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK09087	226	hypothetical protein; Validated	98.52
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.52
PRK13341	725	recombination factor protein RarA/unknown domain f	98.51
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.51
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.51
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.51
PRK09376	416	rho transcription termination factor Rho; Provisio	98.5
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.49
PF13173	128	AAA_14: AAA domain	98.46
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.45
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.44
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.43
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.43
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.41
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.38
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.38
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.38
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.38
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.38
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.37
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.36
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.36
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.35
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.34
TIGR00767	415	rho transcription termination factor Rho. Members	98.34
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.34
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.33
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.33
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.32
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.32
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.31
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.29
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.28
PRK05642	234	DNA replication initiation factor; Validated	98.25
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.24
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.24
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.24
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.23
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.22
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.22
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.22
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.21
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.21
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.19
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.19
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.19
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.17
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.16
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.15
PHA02544	316	44 clamp loader, small subunit; Provisional	98.13
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.13
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.13
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.12
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	98.11
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.11
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.09
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.09
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.08
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.08
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.07
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.07
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.06
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.05
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.05
cd03246	173	ABCC_Protease_Secretion This family represents the	98.05
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.05
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.04
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.04
PRK06620	214	hypothetical protein; Validated	98.04
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.02
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.02
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.02
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.02
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.02
CHL00095	821	clpC Clp protease ATP binding subunit	98.02
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.02
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.0
COG4987	573	CydC ABC-type transport system involved in cytochr	98.0
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	98.0
PRK07399	314	DNA polymerase III subunit delta'; Validated	97.98
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.96
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.96
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.95
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.95
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.93
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.93
PRK11147	635	ABC transporter ATPase component; Reviewed	97.92
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.92
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.92
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.91
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.9
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.89
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.89
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.89
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.89
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.88
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.88
PRK06871	325	DNA polymerase III subunit delta'; Validated	97.88
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.88
PRK11147	635	ABC transporter ATPase component; Reviewed	97.88
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.87
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.87
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.87
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.87
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.87
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.87
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.87
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.86
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.85
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.85
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.85
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.84
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	97.84
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.84
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.83
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.83
PRK10865	857	protein disaggregation chaperone; Provisional	97.83
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	97.82
PRK12422	445	chromosomal replication initiation protein; Provis	97.82
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.81
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	97.8
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.8
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.8
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.8
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.8
PRK06090	319	DNA polymerase III subunit delta'; Validated	97.8
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.79
CHL00181	287	cbbX CbbX; Provisional	97.79
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.79
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	97.79
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.79
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.79
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.79
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.79
PRK08181	269	transposase; Validated	97.78
PRK12608	380	transcription termination factor Rho; Provisional	97.78
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.78
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.78
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.78
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.78
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.78
CHL00176	638	ftsH cell division protein; Validated	97.78
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.78
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.78
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.77
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.77
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.77
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.77
KOG0927	614	consensus Predicted transporter (ABC superfamily)	97.77
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.76
CHL00195	489	ycf46 Ycf46; Provisional	97.76
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.76
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.76
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.76
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.76
KOG0062	582	consensus ATPase component of ABC transporters wit	97.75
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.75
PRK13409	590	putative ATPase RIL; Provisional	97.75
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.75
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.75
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.75
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.75
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.75
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.74
PRK08118	167	topology modulation protein; Reviewed	97.74
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.74
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.74
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.74
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.74
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.74
smart00382	148	AAA ATPases associated with a variety of cellular	97.73
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.73
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.73
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.72
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.72
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.72
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.72
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.72
PRK13546	264	teichoic acids export protein ATP-binding subunit;	97.72
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	97.7
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.7
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	97.7
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	97.69
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.69
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.69
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.69
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.68
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.68
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.68
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.68
PLN03073	718	ABC transporter F family; Provisional	97.67
PRK10908	222	cell division protein FtsE; Provisional	97.67
COG4152	300	ABC-type uncharacterized transport system, ATPase	97.67
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.67
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.67
PLN03073	718	ABC transporter F family; Provisional	97.66
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	97.66
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.66
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.66
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.66
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.66
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.66
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.66
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	97.65
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	97.65
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.65
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.65
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.65
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.65
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	97.65
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	97.65
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.65
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.65
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.65
PF00004	132	AAA: ATPase family associated with various cellula	97.65
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.65
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	97.64
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.64
PRK10938	490	putative molybdenum transport ATP-binding protein	97.64
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.64
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.64
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.64
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.63
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.63
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.63
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.63
PRK10536	262	hypothetical protein; Provisional	97.63
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	97.63
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	97.63
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.63
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.63
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.62
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.62
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.62
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.62
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.62
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.61
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	97.61
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	97.61
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.61
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.61
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.61
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.61
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.61
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.6
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.6
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.6
COG1123	539	ATPase components of various ABC-type transport sy	97.6
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	97.6
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.6
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.59
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	97.59
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.59
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.59
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.59
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.58
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.58
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.58
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	97.58
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.58
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.57
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.57
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.56
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	97.56
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.56
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.56
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.55
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.55
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	97.55
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.55
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.55
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.54
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.54
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.54
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.54
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.54
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.54
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	97.53
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	97.53
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.53
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.53
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.53
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	97.53
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.53
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.53
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	97.53
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.52
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.52
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.52
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.52
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	97.52
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.52
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.51
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	97.51
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.51
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.51
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	97.5
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.5
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.5
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.5
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.5
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.5
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	97.49
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.49
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	97.49
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.49
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.49
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	97.48
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	97.48
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.48
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.48
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.48
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.48
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.48
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.48
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.48
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.48
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.47
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.47
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.47
KOG0062	582	consensus ATPase component of ABC transporters wit	97.46
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.46
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.46
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.45
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.45
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.45
PRK13409	590	putative ATPase RIL; Provisional	97.45
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	97.45
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.45
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.44
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.44
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.44
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.44
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.44
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	97.44
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.43
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.43
COG4559	259	ABC-type hemin transport system, ATPase component	97.42
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	97.42
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	97.42
COG4988	559	CydD ABC-type transport system involved in cytochr	97.42
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.42
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	97.41
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	97.41
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.41
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	97.41
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	97.4
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.4
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	97.4
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.4
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.4
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	97.4
PRK07261	171	topology modulation protein; Provisional	97.4
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.4
PRK00409	782	recombination and DNA strand exchange inhibitor pr	97.39
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.39
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	97.39
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.39
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.39
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.39
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	97.39
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.38
PRK08116	268	hypothetical protein; Validated	97.38
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.38
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	97.38
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.38
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.38
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	97.38
COG4181	228	Predicted ABC-type transport system involved in ly	97.37
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.37
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.37
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.36
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	97.36
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	97.36
cd03299	235	ABC_ModC_like Archeal protein closely related to M	97.36
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.36
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	97.36
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.36
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.36
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.35
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.35
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	97.35
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.35
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.35
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.35
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.34
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.34
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	97.34
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.33
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.33
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.33
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	97.33
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.33
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.33
PLN03211	659	ABC transporter G-25; Provisional	97.32
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.32
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	97.31
COG1123	539	ATPase components of various ABC-type transport sy	97.31
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.31
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	97.3
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	97.3
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.3
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.3
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.3
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.3
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.29
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.29
PRK10938	490	putative molybdenum transport ATP-binding protein	97.29
PRK06964	342	DNA polymerase III subunit delta'; Validated	97.28
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.27
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	97.26
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.26
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	97.26
PRK09183	259	transposase/IS protein; Provisional	97.26
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.25
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	97.25
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	97.25
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.24
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.24
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.24
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.23
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.23
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	97.23
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.22
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	97.21
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.21
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.19
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.19
PRK04132	846	replication factor C small subunit; Provisional	97.19
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.18
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.17
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.15
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.15
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.13
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	97.12
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.11
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.11
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.11
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.09
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.09
COG4172	534	ABC-type uncharacterized transport system, duplica	97.09
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.06
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.03
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.03

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-66  Score=554.79  Aligned_cols=485  Identities=30%  Similarity=0.480  Sum_probs=385.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 044393            5 AGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADV   84 (513)
Q Consensus         5 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~v~~Wl~~v~~~~~d~   84 (513)
                      ...++++.+.+..+...           +...++.+..|++.|..++.+++++++  + ......+..|.+.++++.|++
T Consensus         6 s~~~~~~~~~l~~~~~~-----------~~~~~~~i~~Lk~~L~~l~~~l~d~~a--~-~~~~~~~~~~~e~~~~~~~~~   71 (889)
T KOG4658|consen    6 SFGVEKLDQLLNRESEC-----------LDGKDNYILELKENLKALQSALEDLDA--K-RDDLERRVNWEEDVGDLVYLA   71 (889)
T ss_pred             EEehhhHHHHHHHHHHH-----------HhchHHHHHHHHHHHHHHHHHHHHHHh--h-cchHHHHHHHHHHHHHHHHHH
Confidence            33566676666555433           345556788888999999999999983  3 345788999999999999999


Q ss_pred             HHHHHHHHhhc------------------cccCCCC-CChhhhhhhcHHHHHHHHHHHhhhhcCCCCccccCCCCCCCcc
Q 044393           85 QTLKTKIAEKK------------------SCFNGWC-PNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKE  145 (513)
Q Consensus        85 ed~~d~~~~~~------------------~~~~~~~-~~~~~r~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  145 (513)
                      ++.++.+.-..                  -|+.+.+ .....-+.+++++.++.+.++.+...+.+........++....
T Consensus        72 e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e  151 (889)
T KOG4658|consen   72 EDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVE  151 (889)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcc
Confidence            99987664110                  1111111 1222334556666666666666654444444332111111111


Q ss_pred             cCCccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh-hcCCCCeEEEEEEcCCCChHHHHHH
Q 044393          146 MHIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR-QEKIFDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       146 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      ..+...... +|.+..++.+...|..++..+++|+||||+||||||++++|+.. ...+|+.++|++||++++...++.+
T Consensus       152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~  230 (889)
T KOG4658|consen  152 TRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT  230 (889)
T ss_pred             cCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence            112122222 89999999999999888779999999999999999999999998 8899999999999999999999999


Q ss_pred             HHHHhCCCCCCCCH---HHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC----CcEEEEEeCchHHHhh-cC
Q 044393          225 LVKWLGWELKEKDE---EERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN----CCKILLTTRLQQVCDR-MG  296 (513)
Q Consensus       225 i~~~l~~~~~~~~~---~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~----~~~iivTtr~~~v~~~-~~  296 (513)
                      |++.++........   .+.+..+.+   +..++||||||||+|+..+|+.+..+.+    |++|++|||+..||.. ++
T Consensus       231 Il~~l~~~~~~~~~~~~~~~~~~i~~---~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~  307 (889)
T KOG4658|consen  231 ILERLGLLDEEWEDKEEDELASKLLN---LLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG  307 (889)
T ss_pred             HHHHhccCCcccchhhHHHHHHHHHH---HhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc
Confidence            99998875444333   455555554   4446999999999999999999988877    7999999999999999 77


Q ss_pred             CcceeecCCCChHhHHHHHHHhcCCCC--CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHHHHHHHHHHhhccc
Q 044393          297 CDTRIKLDALDQAEGLDLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADEWNVALDKLQNAKL  373 (513)
Q Consensus       297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~  373 (513)
                      ....++++.|++++||+||++.++...  ..+.++++|++++++|+|+|||++++|+.|+.+ +..+|+.+.+.+.+...
T Consensus       308 ~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~  387 (889)
T KOG4658|consen  308 VDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA  387 (889)
T ss_pred             CCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence            778999999999999999999998542  234489999999999999999999999999988 67799999999888755


Q ss_pred             CCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhccccc-ccHHHHHHHHHHHHHHH
Q 044393          374 DKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQA-ESIEKARSLLRGTIKGL  452 (513)
Q Consensus       374 ~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~-~~~~~~~~~~~~~l~~L  452 (513)
                      .+.++   ....++.+|.+||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ ...+.+.+.++.|+.+|
T Consensus       388 ~~~~~---~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L  463 (889)
T KOG4658|consen  388 ADFSG---MEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL  463 (889)
T ss_pred             CCCCc---hhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence            55422   234799999999999996 99999999999999999999999999999999994 55777889999999999


Q ss_pred             hHccccceeC---CCCcEEecHHHHHHHHHHhc-----cccceEEEecCCccccccccccccccccccC
Q 044393          453 KDSSLLLDID---DDGFVKMHDIVRDVAIWIGK-----VEKKYFTSKVGIGLAEWAVEEGLEQYRGISL  513 (513)
Q Consensus       453 ~~~sll~~~~---~~~~~~mH~lv~~~a~~~~~-----~e~~~~~~~~~~~~~~~p~~~~~~~~~~isl  513 (513)
                      ++++|++...   ...+|+|||+|||+|.++++     .++  .++.++.++.+.|....|...+|+|+
T Consensus       464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~  530 (889)
T KOG4658|consen  464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSL  530 (889)
T ss_pred             HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccccchhheeEEEE
Confidence            9999998765   23579999999999999998     554  77888778888999999999999885

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=100.00  E-value=4.3e-43  Score=339.84  Aligned_cols=269  Identities=35%  Similarity=0.581  Sum_probs=216.8

Q ss_pred             hhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC-
Q 044393          158 TKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK-  234 (513)
Q Consensus       158 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-  234 (513)
                      |+.++++|.+.|..  ++.++|+|+|+||+||||||..++++...+.+|+.++|+.++...+...++..|+..++.... 
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            67889999999987  678999999999999999999999997777889999999999999999999999999988743 


Q ss_pred             ---CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC----CcEEEEEeCchHHHhhcCC-cceeecCCC
Q 044393          235 ---EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN----CCKILLTTRLQQVCDRMGC-DTRIKLDAL  306 (513)
Q Consensus       235 ---~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~----~~~iivTtr~~~v~~~~~~-~~~~~l~~L  306 (513)
                         ..+.......+.+  .+.+ +++||||||+|+...|..+....+    |++||||||+..++..+.. ...+++++|
T Consensus        81 ~~~~~~~~~~~~~l~~--~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L  157 (287)
T PF00931_consen   81 ISDPKDIEELQDQLRE--LLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL  157 (287)
T ss_dssp             SSCCSSHHHHHHHHHH--HHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred             cccccccccccccchh--hhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               3455667777776  5555 799999999999998877654332    8999999999988876654 578999999


Q ss_pred             ChHhHHHHHHHhcCCCC--CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHHHHHHHHHHhhcccCCcccccccc
Q 044393          307 DQAEGLDLLREHAGIDV--ADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADEWNVALDKLQNAKLDKIEGIDKDS  383 (513)
Q Consensus       307 ~~~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~  383 (513)
                      +.++|++||.+.++...  ..+..++.+++|+++|+|+||||.++|++|+.+ +..+|..+++++....... .   ...
T Consensus       158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~-~---~~~  233 (287)
T PF00931_consen  158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRES-R---DYD  233 (287)
T ss_dssp             -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCS-S---GSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c---ccc
Confidence            99999999999987433  345557889999999999999999999999644 6678999999887754321 1   123


Q ss_pred             ccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccc
Q 044393          384 LGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQ  434 (513)
Q Consensus       384 ~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~  434 (513)
                      .++..++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+++|++.
T Consensus       234 ~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~  283 (287)
T PF00931_consen  234 RSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS  283 (287)
T ss_dssp             HHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred             ccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence            3799999999999999 9999999999999999999999999999999987

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=100.00  E-value=2.4e-37  Score=348.50  Aligned_cols=303  Identities=21%  Similarity=0.283  Sum_probs=231.0

Q ss_pred             cccccccchhHHHHHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE---cCCC--------
Q 044393          150 RFFSSFETTKSACNQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV---SQDP--------  216 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~--------  216 (513)
                      ..+..++|++..++++..++.  .+++++|+|+||||+||||||+.+|+.....  |+..+|+..   +...        
T Consensus       181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~~~  258 (1153)
T PLN03210        181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSANP  258 (1153)
T ss_pred             cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhcccccc
Confidence            345668899999999988874  3457899999999999999999999987654  887776631   1110        


Q ss_pred             ---C-hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccC----CCCcEEEEEeCc
Q 044393          217 ---D-IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIP----ANCCKILLTTRL  288 (513)
Q Consensus       217 ---~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~----~~~~~iivTtr~  288 (513)
                         . ...+..+++..+....... .. ....+++  .+. ++|+||||||+|+...++.+...    .+|++||||||+
T Consensus       259 ~~~~~~~~l~~~~l~~il~~~~~~-~~-~~~~~~~--~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd  333 (1153)
T PLN03210        259 DDYNMKLHLQRAFLSEILDKKDIK-IY-HLGAMEE--RLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD  333 (1153)
T ss_pred             cccchhHHHHHHHHHHHhCCCCcc-cC-CHHHHHH--HHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence               0 1223344444432211110 00 0123343  333 59999999999998877776432    239999999999


Q ss_pred             hHHHhhcCCcceeecCCCChHhHHHHHHHhcCCCC-CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHH
Q 044393          289 QQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDV-ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDK  367 (513)
Q Consensus       289 ~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~  367 (513)
                      ..++...+..+.|+++.|+.++|++||+++|+... ++..+.+++++|+++|+|+||||+++|++|+.++..+|+.++++
T Consensus       334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~  413 (1153)
T PLN03210        334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR  413 (1153)
T ss_pred             HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99998777778999999999999999999998543 34467889999999999999999999999999999999999999


Q ss_pred             HhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHH
Q 044393          368 LQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRG  447 (513)
Q Consensus       368 l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~  447 (513)
                      ++....          ..+..+|++||+.|+++..|.||+++|+|+.+..++   .+..|++.+...          ...
T Consensus       414 L~~~~~----------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~  470 (1153)
T PLN03210        414 LRNGLD----------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----------VNI  470 (1153)
T ss_pred             HHhCcc----------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----------chh
Confidence            876431          158889999999998745899999999999886554   356777766433          112


Q ss_pred             HHHHHhHccccceeCCCCcEEecHHHHHHHHHHhccc
Q 044393          448 TIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVE  484 (513)
Q Consensus       448 ~l~~L~~~sll~~~~~~~~~~mH~lv~~~a~~~~~~e  484 (513)
                      .++.|+++||++..  .++|.|||++|++|+.++.++
T Consensus       471 ~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~  505 (1153)
T PLN03210        471 GLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQ  505 (1153)
T ss_pred             ChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhh
Confidence            48999999999764  367999999999999998654

syringae 6; Provisional

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.62  E-value=3.4e-14  Score=159.60  Aligned_cols=291  Identities=13%  Similarity=0.177  Sum_probs=179.0

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc-CCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS-QDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~  227 (513)
                      |......+-|...++.|...   ...+++.|.||+|.||||++..+...      +..+.|+++. .+.++..+...++.
T Consensus        10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~   80 (903)
T PRK04841         10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA   80 (903)
T ss_pred             CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence            33444566777666665432   23589999999999999999998753      2258899996 44566667677777


Q ss_pred             HhCCCCCC--------------CCHHHHHHHHHHHHHhcc-CCeEEEEEecCCCccc------ccccccCCC-CcEEEEE
Q 044393          228 WLGWELKE--------------KDEEERADRLRLMFSESK-GRKILIILDDVWKELD------LETVGIPAN-CCKILLT  285 (513)
Q Consensus       228 ~l~~~~~~--------------~~~~~~~~~l~~~~~l~~-~~~~LlVLDd~~~~~~------~~~l~~~~~-~~~iivT  285 (513)
                      .++.....              .+.......+..  .+.. +.+++|||||+....+      +..+....+ +.++|||
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~  158 (903)
T PRK04841         81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFI--ELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL  158 (903)
T ss_pred             HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHH--HHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence            66421111              111112222222  2322 5899999999966432      222222223 7889899


Q ss_pred             eCchH-H--HhhcCCcceeecC----CCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCCh
Q 044393          286 TRLQQ-V--CDRMGCDTRIKLD----ALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNA  358 (513)
Q Consensus       286 tr~~~-v--~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~  358 (513)
                      ||... +  ...........+.    +|+.+|+.+||....+...    ..+.+..|++.|+|.|+++..++..+.....
T Consensus       159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~  234 (903)
T PRK04841        159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNS  234 (903)
T ss_pred             eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence            99742 1  1111112334555    8999999999998776432    2466789999999999999998877754321


Q ss_pred             HHHHHHHHHHhhcccCCccccccccccccchh-hccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhccccccc
Q 044393          359 DEWNVALDKLQNAKLDKIEGIDKDSLGVYGCL-KFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAES  437 (513)
Q Consensus       359 ~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l-~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~  437 (513)
                      . .......+....          ...+...+ ...+..||+ +.+.++..+|+++   .++.+.+-...   |      
T Consensus       235 ~-~~~~~~~~~~~~----------~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~~~l~---~------  290 (903)
T PRK04841        235 S-LHDSARRLAGIN----------ASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALIVRVT---G------  290 (903)
T ss_pred             c-hhhhhHhhcCCC----------chhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHHHHHc---C------
Confidence            0 011111110000          00233333 334789998 9999999999997   34433222111   1      


Q ss_pred             HHHHHHHHHHHHHHHhHccccc-eeC-CCCcEEecHHHHHHHHHHhc
Q 044393          438 IEKARSLLRGTIKGLKDSSLLL-DID-DDGFVKMHDIVRDVAIWIGK  482 (513)
Q Consensus       438 ~~~~~~~~~~~l~~L~~~sll~-~~~-~~~~~~mH~lv~~~a~~~~~  482 (513)
                          .......+++|.+.+++. +.+ ...+|+.|++++++++....
T Consensus       291 ----~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~  333 (903)
T PRK04841        291 ----EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ  333 (903)
T ss_pred             ----CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence                111244689999999965 333 33479999999999998763

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.44  E-value=1.9e-11  Score=126.46  Aligned_cols=290  Identities=16%  Similarity=0.174  Sum_probs=186.2

Q ss_pred             cccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-CCChHHHHHHHHHHhC
Q 044393          152 FSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-DPDIINVQSELVKWLG  230 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~  230 (513)
                      ...++-|...++.|..   ..+.+.+.|..|+|.|||||+.+.+.....   -..+.|.+++. +.++..+...++..++
T Consensus        18 ~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~   91 (894)
T COG2909          18 PDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQ   91 (894)
T ss_pred             cccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHH
Confidence            4556667655554443   235689999999999999999999884333   35688999874 5578888888888887


Q ss_pred             CCCCCCCH--------------HHHHHHHHHHHHhc-cCCeEEEEEecCCCccc------ccccccCCC-CcEEEEEeCc
Q 044393          231 WELKEKDE--------------EERADRLRLMFSES-KGRKILIILDDVWKELD------LETVGIPAN-CCKILLTTRL  288 (513)
Q Consensus       231 ~~~~~~~~--------------~~~~~~l~~~~~l~-~~~~~LlVLDd~~~~~~------~~~l~~~~~-~~~iivTtr~  288 (513)
                      ...+...+              ..+.+.+..  .+. -.++..|||||..-..+      +.-+....+ +-.+|+|||+
T Consensus        92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~--Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~  169 (894)
T COG2909          92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLN--ELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS  169 (894)
T ss_pred             HhCccccHHHHHHHHhcccccHHHHHHHHHH--HHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence            54333221              222233332  222 23689999999754332      333333333 8999999998


Q ss_pred             hHHHhh--cC-CcceeecC----CCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHH
Q 044393          289 QQVCDR--MG-CDTRIKLD----ALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR-NADE  360 (513)
Q Consensus       289 ~~v~~~--~~-~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-~~~~  360 (513)
                      ..-...  +. ....+++.    .|+.+|+.++|....+.+-    .+..++.+.+..+|-+-|+..++=.++++ +.+.
T Consensus       170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q  245 (894)
T COG2909         170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQLIALALRNNTSAEQ  245 (894)
T ss_pred             CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence            632211  11 11233332    4899999999998875332    24567899999999999999999888843 3221


Q ss_pred             HHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHH
Q 044393          361 WNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEK  440 (513)
Q Consensus       361 w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~  440 (513)
                      -...+....+    .+         ......--++.||+ ++|.+++-||+++.   + .+.|+..-.+           
T Consensus       246 ~~~~LsG~~~----~l---------~dYL~eeVld~Lp~-~l~~FLl~~svl~~---f-~~eL~~~Ltg-----------  296 (894)
T COG2909         246 SLRGLSGAAS----HL---------SDYLVEEVLDRLPP-ELRDFLLQTSVLSR---F-NDELCNALTG-----------  296 (894)
T ss_pred             HhhhccchHH----HH---------HHHHHHHHHhcCCH-HHHHHHHHHHhHHH---h-hHHHHHHHhc-----------
Confidence            1111110000    00         11234556788999 99999999999973   2 2233332111           


Q ss_pred             HHHHHHHHHHHHhHccccc-eeC-CCCcEEecHHHHHHHHHHhcc
Q 044393          441 ARSLLRGTIKGLKDSSLLL-DID-DDGFVKMHDIVRDVAIWIGKV  483 (513)
Q Consensus       441 ~~~~~~~~l~~L~~~sll~-~~~-~~~~~~mH~lv~~~a~~~~~~  483 (513)
                       ++.+...+++|.+++|+- +.+ +.++|+.|+|+.||.+.....
T Consensus       297 -~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~  340 (894)
T COG2909         297 -EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR  340 (894)
T ss_pred             -CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence             233445799999999985 333 567899999999999987654

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.40  E-value=2e-10  Score=110.02  Aligned_cols=192  Identities=19%  Similarity=0.216  Sum_probs=122.8

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK  236 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~  236 (513)
                      +....+..+...+..+ ...+.|+|++|+|||||++.+++...... + ...|+ +....+..+++..++..++.+....
T Consensus        27 ~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~  102 (269)
T TIGR03015        27 GHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR  102 (269)
T ss_pred             HHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC
Confidence            3455566666555543 36899999999999999999998876431 1 12232 3334567788889998888765544


Q ss_pred             CHHHHHHHHHHHH--HhccCCeEEEEEecCCCcc--cccccc---cCC--C--CcEEEEEeCchHHHhhcC---------
Q 044393          237 DEEERADRLRLMF--SESKGRKILIILDDVWKEL--DLETVG---IPA--N--CCKILLTTRLQQVCDRMG---------  296 (513)
Q Consensus       237 ~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~--~~~~l~---~~~--~--~~~iivTtr~~~v~~~~~---------  296 (513)
                      ........+..++  ....+++.+||+||++...  .++.+.   ...  .  ...|++|.... +...+.         
T Consensus       103 ~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~  181 (269)
T TIGR03015       103 DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQ  181 (269)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHh
Confidence            4333333333322  2335688999999998753  222221   111  1  23455555432 221111         


Q ss_pred             -CcceeecCCCChHhHHHHHHHhcCC---CCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          297 -CDTRIKLDALDQAEGLDLLREHAGI---DVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       297 -~~~~~~l~~L~~~e~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                       ....+.+.+|+.++..+++...+..   .....-..+..+.|++.|+|.|..|..++..+
T Consensus       182 r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       182 RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence             1246789999999999999876641   11122346889999999999999999998876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.33  E-value=3.7e-10  Score=114.45  Aligned_cols=287  Identities=14%  Similarity=0.069  Sum_probs=170.6

Q ss_pred             ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393          153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW  228 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~  228 (513)
                      ..++||+.+++.|...+.+    +....+.|+|++|+|||++++.+++...........+++++....+...++..++.+
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~  109 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ  109 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence            4477999999999888732    334678899999999999999999988765323445667777777788899999998


Q ss_pred             hCCC-C--CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc------ccccccc---CCC--CcEEEEEeCchHHHhh
Q 044393          229 LGWE-L--KEKDEEERADRLRLMFSESKGRKILIILDDVWKEL------DLETVGI---PAN--CCKILLTTRLQQVCDR  294 (513)
Q Consensus       229 l~~~-~--~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~------~~~~l~~---~~~--~~~iivTtr~~~v~~~  294 (513)
                      +... .  ...+..+....+.+.+.. .+++.+||||+++...      .+..+..   ...  +..+|.++....+...
T Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~  188 (394)
T PRK00411        110 LFGHPPPSSGLSFDELFDKIAEYLDE-RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYI  188 (394)
T ss_pred             hcCCCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhh
Confidence            8652 1  222344555555552222 2467899999997643      1222211   112  3346777776443322


Q ss_pred             cC-------CcceeecCCCChHhHHHHHHHhcCCCC-CCCchHHHHHHHHHHh----CCCchHHHHHHHHhc-----CC-
Q 044393          295 MG-------CDTRIKLDALDQAEGLDLLREHAGIDV-ADTTLTDVSKRVADEC----KGLPLAIKVVGSALT-----GR-  356 (513)
Q Consensus       295 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~----~G~PLai~~~~~~l~-----~~-  356 (513)
                      +.       ....+.+.+++.++..+++..++.... ...-.++..+.|++.+    |..+.|+.++-....     +. 
T Consensus       189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~  268 (394)
T PRK00411        189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR  268 (394)
T ss_pred             cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence            11       124689999999999999988763211 1111234455555555    446667666543321     11 


Q ss_pred             --ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCC-CC-CCccCHHHHHHH--HHhh
Q 044393          357 --NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLF-PE-DYKIDLEDLLGY--AVGL  430 (513)
Q Consensus       357 --~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~f-p~-~~~i~~~~Li~~--w~a~  430 (513)
                        +.+....+++.+..                 ....-.+..||. +.|..+..++.. .. ...+....+...  .+++
T Consensus       269 ~I~~~~v~~a~~~~~~-----------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~  330 (394)
T PRK00411        269 KVTEEDVRKAYEKSEI-----------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE  330 (394)
T ss_pred             CcCHHHHHHHHHHHHH-----------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence              44555555554421                 123446778997 666665544422 21 133555555432  2222


Q ss_pred             cccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393          431 VWYQAESIEKARSLLRGTIKGLKDSSLLLDI  461 (513)
Q Consensus       431 g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~  461 (513)
                      .+-.  . .-.......+++.|...|+|...
T Consensus       331 ~~~~--~-~~~~~~~~~~l~~L~~~glI~~~  358 (394)
T PRK00411        331 ELGY--E-PRTHTRFYEYINKLDMLGIINTR  358 (394)
T ss_pred             HcCC--C-cCcHHHHHHHHHHHHhcCCeEEE
Confidence            1100  0 00234456789999999999853

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.32  E-value=9.3e-12  Score=116.48  Aligned_cols=190  Identities=19%  Similarity=0.243  Sum_probs=102.8

Q ss_pred             ccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH---------
Q 044393          155 FETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL---------  225 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i---------  225 (513)
                      |+||+.+++.|...+..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+...+.. .......+         
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~-~~~~~~~~~~~~~~~~~   77 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEES-NESSLRSFIEETSLADE   77 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBS-HHHHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccch-hhhHHHHHHHHHHHHHH
Confidence            689999999999999887678999999999999999999999885431 1 22233222222 22222222         


Q ss_pred             -HHHhCCCCC-----------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-ccc----------ccccC---CCC
Q 044393          226 -VKWLGWELK-----------EKDEEERADRLRLMFSESKGRKILIILDDVWKEL-DLE----------TVGIP---ANC  279 (513)
Q Consensus       226 -~~~l~~~~~-----------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-~~~----------~l~~~---~~~  279 (513)
                       ...+....+           ..........+...+... +++.+||+||+.... ...          .+...   ..+
T Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  156 (234)
T PF01637_consen   78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN  156 (234)
T ss_dssp             CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred             HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence             111211111           011122222232322222 355999999997665 211          11111   225


Q ss_pred             cEEEEEeCchHHHhh--------cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393          280 CKILLTTRLQQVCDR--------MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       280 ~~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~  348 (513)
                      ..+|+++.+..+...        .+....+.+++|+.+++++++...+.....-+..++..++|+..+||+|..|..
T Consensus       157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~  233 (234)
T PF01637_consen  157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE  233 (234)
T ss_dssp             EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred             ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence            556666655544433        222345999999999999999987643211112366779999999999998864

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.24  E-value=1.1e-09  Score=106.87  Aligned_cols=271  Identities=14%  Similarity=0.113  Sum_probs=146.7

Q ss_pred             cccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          152 FSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      +..|+|++..++.|..++.     .+....+.++||+|+|||+||+.+++.....  +   ...+.+..... ..+...+
T Consensus         3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~-~~l~~~l   76 (305)
T TIGR00635         3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKP-GDLAAIL   76 (305)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCc-hhHHHHH
Confidence            4568999999999988885     2335678999999999999999999987542  1   11221111111 1222333


Q ss_pred             HHhCCCC-------CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC-CcEEEEEeCchHHHhhc--C
Q 044393          227 KWLGWEL-------KEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN-CCKILLTTRLQQVCDRM--G  296 (513)
Q Consensus       227 ~~l~~~~-------~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~-~~~iivTtr~~~v~~~~--~  296 (513)
                      ..++...       ...+ ......+..   ...+.+..+|+++..+...+..   +.+ .+-|..||+...+...+  .
T Consensus        77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~---~~~~~~~~~v~~~~~~~~~~~~---~~~~~~li~~t~~~~~l~~~l~sR  149 (305)
T TIGR00635        77 TNLEEGDVLFIDEIHRLS-PAVEELLYP---AMEDFRLDIVIGKGPSARSVRL---DLPPFTLVGATTRAGMLTSPLRDR  149 (305)
T ss_pred             HhcccCCEEEEehHhhhC-HHHHHHhhH---HHhhhheeeeeccCccccceee---cCCCeEEEEecCCccccCHHHHhh
Confidence            3332211       0011 111222332   2222445566666544433322   222 44555566654332221  1


Q ss_pred             CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhcccCCc
Q 044393          297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKI  376 (513)
Q Consensus       297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~  376 (513)
                      ....+.+.+++.++..+++.+.++.... .-.++....|++.|+|.|-.+..++..+       |....  ......-..
T Consensus       150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~--~~~~~~it~  219 (305)
T TIGR00635       150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ--VRGQKIINR  219 (305)
T ss_pred             cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH--HcCCCCcCH
Confidence            2356889999999999999988863322 2235678899999999997765555432       11100  000000000


Q ss_pred             cccccccccccchhhccccCCCCccchHHHh-hhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHH-HHhH
Q 044393          377 EGIDKDSLGVYGCLKFSYDYLNGEDSRSCFL-LCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIK-GLKD  454 (513)
Q Consensus       377 ~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~-~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L~~  454 (513)
                      +.    -......+...|..|++ ..+..|. .++.++.+ .+..+.+....   |        .....+...++ .|++
T Consensus       220 ~~----v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~  282 (305)
T TIGR00635       220 DI----ALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ  282 (305)
T ss_pred             HH----HHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence            00    00122225666788887 6666666 55667643 45544443221   1        11223344577 6999


Q ss_pred             ccccceeC
Q 044393          455 SSLLLDID  462 (513)
Q Consensus       455 ~sll~~~~  462 (513)
                      ++||....
T Consensus       283 ~~li~~~~  290 (305)
T TIGR00635       283 IGFLQRTP  290 (305)
T ss_pred             cCCcccCC
Confidence            99997443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.22  E-value=5.5e-09  Score=104.73  Aligned_cols=286  Identities=17%  Similarity=0.152  Sum_probs=166.4

Q ss_pred             cccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcC-CC---CeEEEEEEcCCCChHHHHHHH
Q 044393          154 SFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IF---DEVGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~i  225 (513)
                      .++||+.+++.|...+..    +....+.|+|++|+|||++++.+++...... ..   -..+|+++....+...++..+
T Consensus        16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i   95 (365)
T TIGR02928        16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL   95 (365)
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence            577999999999888853    3346899999999999999999998875321 11   235677777777778899999


Q ss_pred             HHHh---CCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----c-ccccccC-----C--CCcEEEEEeCc
Q 044393          226 VKWL---GWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKEL----D-LETVGIP-----A--NCCKILLTTRL  288 (513)
Q Consensus       226 ~~~l---~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----~-~~~l~~~-----~--~~~~iivTtr~  288 (513)
                      +.++   +...+  ..+..+....+...+. ..+++++||||+++...    + +..+...     .  .+..+|++|+.
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~  174 (365)
T TIGR02928        96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELN-ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND  174 (365)
T ss_pred             HHHHhhcCCCCCCCCCCHHHHHHHHHHHHH-hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence            9888   33222  2233444444444222 23478999999997652    1 2222111     1  13456666665


Q ss_pred             hHHHhhcC-------CcceeecCCCChHhHHHHHHHhcCC---C-CCCCchHHHHHHHHHHhCCCchHHHHHHHH-h---
Q 044393          289 QQVCDRMG-------CDTRIKLDALDQAEGLDLLREHAGI---D-VADTTLTDVSKRVADECKGLPLAIKVVGSA-L---  353 (513)
Q Consensus       289 ~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~---~-~~~~~~~~~~~~i~~~~~G~PLai~~~~~~-l---  353 (513)
                      ......+.       ....+.+.+++.++..+++..++..   . ...++..+.+..++..+.|.|-.+..+... .   
T Consensus       175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a  254 (365)
T TIGR02928       175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA  254 (365)
T ss_pred             cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            43322111       1246889999999999999887641   1 112222234455666777988544332221 1   


Q ss_pred             -c-CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCC--CCCCccCHHHHHHH
Q 044393          354 -T-GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLF--PEDYKIDLEDLLGY  426 (513)
Q Consensus       354 -~-~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~f--p~~~~i~~~~Li~~  426 (513)
                       . +.   +.+....+.+.+..                 ....-++..||. +.+.++..++..  .++..+....+...
T Consensus       255 ~~~~~~~it~~~v~~a~~~~~~-----------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~  316 (365)
T TIGR02928       255 EREGAERVTEDHVEKAQEKIEK-----------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEV  316 (365)
T ss_pred             HHcCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence             1 11   34444544444321                 123445677887 676655544321  13344666666653


Q ss_pred             H--HhhcccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393          427 A--VGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDI  461 (513)
Q Consensus       427 w--~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~  461 (513)
                      +  +++. +..  ..-......++++.|...|||...
T Consensus       317 y~~~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~  350 (365)
T TIGR02928       317 YKEVCED-IGV--DPLTQRRISDLLNELDMLGLVEAE  350 (365)
T ss_pred             HHHHHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence            2  1221 110  012235667789999999999754

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.21  E-value=4.5e-10  Score=110.38  Aligned_cols=275  Identities=14%  Similarity=0.095  Sum_probs=149.5

Q ss_pred             CccccccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      .|..+..|+|++..++.+...+.     ....+.+.|+|++|+||||||+.+++.....  +   .+...+ .......+
T Consensus        20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~-~~~~~~~l   93 (328)
T PRK00080         20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGP-ALEKPGDL   93 (328)
T ss_pred             CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecc-cccChHHH
Confidence            45677889999999988877764     2334678999999999999999999987643  1   111111 11111223


Q ss_pred             HHHHHHhCCCC-------CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC-CcEEEEEeCchHHHhh
Q 044393          223 SELVKWLGWEL-------KEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN-CCKILLTTRLQQVCDR  294 (513)
Q Consensus       223 ~~i~~~l~~~~-------~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~-~~~iivTtr~~~v~~~  294 (513)
                      ..++..+....       ...+ ....+.+..   ...+.+..+++|+..+...+..   ..+ .+-|..|++...+...
T Consensus        94 ~~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~---~~e~~~~~~~l~~~~~~~~~~~---~l~~~~li~at~~~~~l~~~  166 (328)
T PRK00080         94 AAILTNLEEGDVLFIDEIHRLS-PVVEEILYP---AMEDFRLDIMIGKGPAARSIRL---DLPPFTLIGATTRAGLLTSP  166 (328)
T ss_pred             HHHHHhcccCCEEEEecHhhcc-hHHHHHHHH---HHHhcceeeeeccCccccceee---cCCCceEEeecCCcccCCHH
Confidence            33333332110       0000 111122222   1122444555555443322221   112 3445556664333222


Q ss_pred             c--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 044393          295 M--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAK  372 (513)
Q Consensus       295 ~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~  372 (513)
                      +  .....+.+.+++.++..+++.+.++..... -.++.+..|++.|+|.|-.+..+...+.     .|....    ...
T Consensus       167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~----~~~  236 (328)
T PRK00080        167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK----GDG  236 (328)
T ss_pred             HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc----CCC
Confidence            1  112568999999999999999887643222 2357789999999999976655554321     111100    000


Q ss_pred             cCCccccccccccccchhhccccCCCCccchHHHh-hhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHH-
Q 044393          373 LDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFL-LCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIK-  450 (513)
Q Consensus       373 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~-~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~-  450 (513)
                        .+..  ..-......+...+..|++ ..+..+. .+..|+.+ .+..+.+.... +      .....++    +.++ 
T Consensus       237 --~I~~--~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-g------~~~~~~~----~~~e~  299 (328)
T PRK00080        237 --VITK--EIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-G------EERDTIE----DVYEP  299 (328)
T ss_pred             --CCCH--HHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-C------CCcchHH----HHhhH
Confidence              0000  0001233445667778887 6666665 77778755 46666654322 1      1122222    2355 


Q ss_pred             HHhHccccceeC
Q 044393          451 GLKDSSLLLDID  462 (513)
Q Consensus       451 ~L~~~sll~~~~  462 (513)
                      .|++.+|++...
T Consensus       300 ~Li~~~li~~~~  311 (328)
T PRK00080        300 YLIQQGFIQRTP  311 (328)
T ss_pred             HHHHcCCcccCC
Confidence            899999997544

>PF05729 NACHT: NACHT domain

Probab=99.19  E-value=2.9e-10  Score=100.28  Aligned_cols=138  Identities=19%  Similarity=0.204  Sum_probs=89.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEEEEEcCCCChH---HHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGIATVSQDPDII---NVQSELVKWLGWELKEKDEEERADRLRL  247 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~  247 (513)
                      +++.|+|.+|+||||+++.++.........    ...+|.+........   .+...+..........     ....+..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~   75 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE   75 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence            578999999999999999999988776433    345566665444322   2333333333221111     1112222


Q ss_pred             HHHhccCCeEEEEEecCCCccc-------------ccccccC--CCCcEEEEEeCchHH---HhhcCCcceeecCCCChH
Q 044393          248 MFSESKGRKILIILDDVWKELD-------------LETVGIP--ANCCKILLTTRLQQV---CDRMGCDTRIKLDALDQA  309 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~~~--~~~~~iivTtr~~~v---~~~~~~~~~~~l~~L~~~  309 (513)
                        .....++++||||++++...             +..+...  .++.++++|||....   .........+.+.+|+++
T Consensus        76 --~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~  153 (166)
T PF05729_consen   76 --LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE  153 (166)
T ss_pred             --HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence              23345899999999866533             2222222  348999999998655   334444468999999999


Q ss_pred             hHHHHHHHhc
Q 044393          310 EGLDLLREHA  319 (513)
Q Consensus       310 e~~~lf~~~~  319 (513)
                      +..+++.+.+
T Consensus       154 ~~~~~~~~~f  163 (166)
T PF05729_consen  154 DIKQYLRKYF  163 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.10  E-value=1e-09  Score=104.77  Aligned_cols=177  Identities=16%  Similarity=0.143  Sum_probs=116.3

Q ss_pred             cCCccccccccchhHHH---HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          146 MHIPRFFSSFETTKSAC---NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       146 ~~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      +..|..+..++|.+..+   .-|...+..+.+.-..+|||+|+||||||+.+.+.....       |..++...+-..-+
T Consensus        17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdl   89 (436)
T COG2256          17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDL   89 (436)
T ss_pred             HhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHH
Confidence            55677888888888766   346677788888899999999999999999999976644       34445444433444


Q ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccCCC-CcEEEE--EeCchHHHh---h
Q 044393          223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIPAN-CCKILL--TTRLQQVCD---R  294 (513)
Q Consensus       223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~~~-~~~iiv--Ttr~~~v~~---~  294 (513)
                      +.+++..                ++  ....|++.+|++|++..-.  +-+.+++... |.-++|  ||.++.+.-   .
T Consensus        90 r~i~e~a----------------~~--~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~AL  151 (436)
T COG2256          90 REIIEEA----------------RK--NRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPAL  151 (436)
T ss_pred             HHHHHHH----------------HH--HHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHH
Confidence            4444321                11  2333699999999996542  3344444444 444444  666665421   1


Q ss_pred             cCCcceeecCCCChHhHHHHHHHhcCCCC-----CCC-chHHHHHHHHHHhCCCchHHH
Q 044393          295 MGCDTRIKLDALDQAEGLDLLREHAGIDV-----ADT-TLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-----~~~-~~~~~~~~i~~~~~G~PLai~  347 (513)
                      .+-..++.+++|+.++-..++.+.+....     ... -.++....|+..++|---++-
T Consensus       152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL  210 (436)
T COG2256         152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL  210 (436)
T ss_pred             hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence            23347899999999999999998442111     111 225577888999999875443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.04  E-value=4.3e-10  Score=115.30  Aligned_cols=146  Identities=18%  Similarity=0.234  Sum_probs=86.2

Q ss_pred             ccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCCh------------
Q 044393          155 FETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDI------------  218 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~------------  218 (513)
                      |.+....++.+...+..+  ..|+|+|++|+|||||.+.+.+.......    -..+-..+++|..+.            
T Consensus       331 y~~~~~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~  408 (530)
T COG0488         331 YDGGRLLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELS  408 (530)
T ss_pred             cCCCceeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHH
Confidence            334344566666666667  89999999999999999999777654311    111223333333311            


Q ss_pred             -------HHHHHHHHHHhCCCCCC-------CCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC-----C
Q 044393          219 -------INVQSELVKWLGWELKE-------KDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN-----C  279 (513)
Q Consensus       219 -------~~~~~~i~~~l~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~-----~  279 (513)
                             ....+..+..++.+...       .+-.+.......  .+.-.++-+||||+++|++|++.+.....     .
T Consensus       409 ~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La--~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~  486 (530)
T COG0488         409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA--KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE  486 (530)
T ss_pred             hhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH--HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC
Confidence                   11222223333322111       111122222222  23334777999999999999877643322     8


Q ss_pred             cEEEEEeCchHHHhhcCCcceeecCC
Q 044393          280 CKILLTTRLQQVCDRMGCDTRIKLDA  305 (513)
Q Consensus       280 ~~iivTtr~~~v~~~~~~~~~~~l~~  305 (513)
                      +.||++||++.+.+.+. ...+.+++
T Consensus       487 Gtvl~VSHDr~Fl~~va-~~i~~~~~  511 (530)
T COG0488         487 GTVLLVSHDRYFLDRVA-TRIWLVED  511 (530)
T ss_pred             CeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence            89999999999988875 45666654

>COG3899 Predicted ATPase [General function prediction only]

Probab=99.01  E-value=1e-08  Score=112.00  Aligned_cols=302  Identities=18%  Similarity=0.208  Sum_probs=174.6

Q ss_pred             ccchhHHHHHHHHHHh---cCCccEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCCCChH---HHHHHHHH
Q 044393          155 FETTKSACNQITEALK---KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQDPDII---NVQSELVK  227 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~---~~~~~i~~  227 (513)
                      ++||+.+++.|...+.   ++...++.+.|.+|+|||+|++.|......+ +.|-...+-....+....   ..++++..
T Consensus         2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~   81 (849)
T COG3899           2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG   81 (849)
T ss_pred             CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence            5799999999988874   4566899999999999999999999988765 222111111112222211   12222222


Q ss_pred             Hh-------------------CCCCC-----------------------CCCHHHHH-----HHHHHHHHhccCCeEEEE
Q 044393          228 WL-------------------GWELK-----------------------EKDEEERA-----DRLRLMFSESKGRKILII  260 (513)
Q Consensus       228 ~l-------------------~~~~~-----------------------~~~~~~~~-----~~l~~~~~l~~~~~~LlV  260 (513)
                      ++                   +....                       +.....+.     ..+..  .....++.++|
T Consensus        82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~--~~~~~~plVi~  159 (849)
T COG3899          82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQV--FTAEEHPLVIV  159 (849)
T ss_pred             HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHH--HHhccCCeEEE
Confidence            22                   11100                       00001111     11111  33445799999


Q ss_pred             EecCCCcc-c----ccccccCC-------CCcEEEEEeCch--HHHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCC
Q 044393          261 LDDVWKEL-D----LETVGIPA-------NCCKILLTTRLQ--QVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADT  326 (513)
Q Consensus       261 LDd~~~~~-~----~~~l~~~~-------~~~~iivTtr~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~  326 (513)
                      +||+...+ .    +..+....       +....+.|.+..  ...........+.|.||+..+...+.....+....  
T Consensus       160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--  237 (849)
T COG3899         160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--  237 (849)
T ss_pred             EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--
Confidence            99994332 1    11111111       022233333332  12222233478999999999999999999875332  


Q ss_pred             chHHHHHHHHHHhCCCchHHHHHHHHhcCC-------ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCC
Q 044393          327 TLTDVSKRVADECKGLPLAIKVVGSALTGR-------NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNG  399 (513)
Q Consensus       327 ~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~  399 (513)
                      ...+..+.|+++..|+|+.+..+-..+...       ....|..-..++....        ..+ .+...+..-.+.||.
T Consensus       238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~--------~~~-~vv~~l~~rl~kL~~  308 (849)
T COG3899         238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA--------TTD-AVVEFLAARLQKLPG  308 (849)
T ss_pred             ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch--------hhH-HHHHHHHHHHhcCCH
Confidence            235678999999999999999999988753       2334443332221111        111 244458888999998


Q ss_pred             ccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHhHcccccee-----C-CCC-c-E-Eec
Q 044393          400 EDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDI-----D-DDG-F-V-KMH  470 (513)
Q Consensus       400 ~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~-----~-~~~-~-~-~mH  470 (513)
                       ..+..+...|++..  .|+...|...+-.          ....++...++.|.....+-..     . ... . | ..|
T Consensus       309 -~t~~Vl~~AA~iG~--~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H  375 (849)
T COG3899         309 -TTREVLKAAACIGN--RFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH  375 (849)
T ss_pred             -HHHHHHHHHHHhCc--cCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence             89999999999964  4667777665521          2233334345555555444211     1 111 1 3 569


Q ss_pred             HHHHHHHHHHhc
Q 044393          471 DIVRDVAIWIGK  482 (513)
Q Consensus       471 ~lv~~~a~~~~~  482 (513)
                      ++|++.|-....
T Consensus       376 ~~vqqaaY~~i~  387 (849)
T COG3899         376 DRVQQAAYNLIP  387 (849)
T ss_pred             HHHHHHHhccCc
Confidence            999999887553

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.00  E-value=4.9e-09  Score=106.26  Aligned_cols=180  Identities=15%  Similarity=0.150  Sum_probs=110.3

Q ss_pred             CccccccccchhHHHHH---HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQ---ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      .|..+..++|++..+..   |...+..+....+.|+|++|+||||||+.+++.....       |+.++........++.
T Consensus         7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~   79 (413)
T PRK13342          7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLRE   79 (413)
T ss_pred             CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHH
Confidence            45566778898888666   8888888877889999999999999999999876532       2333322211112222


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccCCC-CcEEEE--EeCchHH--Hhh-cC
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIPAN-CCKILL--TTRLQQV--CDR-MG  296 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~~~-~~~iiv--Ttr~~~v--~~~-~~  296 (513)
                      ++..                ...  ....+++.+|++||++...  ..+.+..... +..+++  ||.+...  ... ..
T Consensus        80 ii~~----------------~~~--~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~S  141 (413)
T PRK13342         80 VIEE----------------ARQ--RRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLS  141 (413)
T ss_pred             HHHH----------------HHH--hhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhc
Confidence            2221                111  1223578899999997653  2222222222 444444  3343321  111 12


Q ss_pred             CcceeecCCCChHhHHHHHHHhcCCC-CCC-CchHHHHHHHHHHhCCCchHHHHHHHH
Q 044393          297 CDTRIKLDALDQAEGLDLLREHAGID-VAD-TTLTDVSKRVADECKGLPLAIKVVGSA  352 (513)
Q Consensus       297 ~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~-~~~~~~~~~i~~~~~G~PLai~~~~~~  352 (513)
                      ....+.+.+++.++...++.+.+... ... .-.++....|++.|+|.|..+..+...
T Consensus       142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~  199 (413)
T PRK13342        142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL  199 (413)
T ss_pred             cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            22678999999999999998865421 111 233677889999999999866544433

>PRK06893 DNA replication initiation factor; Validated

Probab=98.91  E-value=2.6e-08  Score=92.51  Aligned_cols=148  Identities=15%  Similarity=0.101  Sum_probs=92.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+.+.|+|++|+|||+|++.+++....+  ...+.|+.+....   .....                   .+.   .+ .
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~~~-------------------~~~---~~-~   90 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFSPA-------------------VLE---NL-E   90 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhhHH-------------------HHh---hc-c
Confidence            3678999999999999999999987654  2334565543110   00000                   111   11 1


Q ss_pred             CCeEEEEEecCCCcc---cccc-ccc-----CCCCcEEEEE-eCc---------hHHHhhcCCcceeecCCCChHhHHHH
Q 044393          254 GRKILIILDDVWKEL---DLET-VGI-----PANCCKILLT-TRL---------QQVCDRMGCDTRIKLDALDQAEGLDL  314 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~---~~~~-l~~-----~~~~~~iivT-tr~---------~~v~~~~~~~~~~~l~~L~~~e~~~l  314 (513)
                       +.-+|+|||++...   .|+. +..     ...++.+|++ ++.         +.+...+.....+++++++.++.+++
T Consensus        91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i  169 (229)
T PRK06893         91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV  169 (229)
T ss_pred             -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence             34599999998642   2221 111     1125566554 443         34555555557899999999999999


Q ss_pred             HHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393          315 LREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS  351 (513)
Q Consensus       315 f~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~  351 (513)
                      +++.+..... .-.++...-|++.+.|..-.+..+-.
T Consensus       170 L~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~  205 (229)
T PRK06893        170 LQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALD  205 (229)
T ss_pred             HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence            9988863322 22367788899999887765544433

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.83  E-value=6e-08  Score=90.26  Aligned_cols=165  Identities=14%  Similarity=0.098  Sum_probs=101.7

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK  236 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~  236 (513)
                      +.+..++.+..++.......+.|+|++|+|||+||+.+++.....  ....+++.++.-..   ....+           
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~---~~~~~-----------   84 (226)
T TIGR03420        21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ---ADPEV-----------   84 (226)
T ss_pred             CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH---hHHHH-----------
Confidence            356677888887655556889999999999999999999887543  23344554332111   00000           


Q ss_pred             CHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---c-ccccc-----CCCCcEEEEEeCchH---------HHhhcCCc
Q 044393          237 DEEERADRLRLMFSESKGRKILIILDDVWKELD---L-ETVGI-----PANCCKILLTTRLQQ---------VCDRMGCD  298 (513)
Q Consensus       237 ~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---~-~~l~~-----~~~~~~iivTtr~~~---------v~~~~~~~  298 (513)
                              + .  .+ . +.-+|||||+.....   + ..+..     ...+..+|+||+...         +...+...
T Consensus        85 --------~-~--~~-~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~  151 (226)
T TIGR03420        85 --------L-E--GL-E-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG  151 (226)
T ss_pred             --------H-h--hc-c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence                    0 1  11 1 234899999965431   1 11211     112568888887532         22223223


Q ss_pred             ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393          299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS  351 (513)
Q Consensus       299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~  351 (513)
                      ..+++.+++.++...++...+.... ..-.++..+.|++.+.|+|..+..+..
T Consensus       152 ~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~  203 (226)
T TIGR03420       152 LVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLD  203 (226)
T ss_pred             eeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence            6799999999999999887543211 122356778888889999887766544

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.77  E-value=2.2e-07  Score=99.02  Aligned_cols=194  Identities=18%  Similarity=0.160  Sum_probs=111.7

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccE-EEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKM-VGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..+..|.+.+..++..- +.++|+.|+||||+|+.+++.+.........   .+..    -.....+.
T Consensus        11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~----C~sC~~i~   83 (944)
T PRK14949         11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGV----CSSCVEIA   83 (944)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCC----chHHHHHh
Confidence            34567778899999999999998877654 5899999999999999999887542111000   0000    00000000


Q ss_pred             HHhC-----CCCC-CCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--cccc----cccCCCCcEEEEEeCc-hHHH
Q 044393          227 KWLG-----WELK-EKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLET----VGIPANCCKILLTTRL-QQVC  292 (513)
Q Consensus       227 ~~l~-----~~~~-~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~----l~~~~~~~~iivTtr~-~~v~  292 (513)
                      ....     .... ....+.....+..+. .-..+++-++|||++....  ....    +..+.++.++|++|.+ ..+.
T Consensus        84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl  163 (944)
T PRK14949         84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (944)
T ss_pred             cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence            0000     0000 011111211111110 1123577899999996552  2222    2233446666666654 3333


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      ..+ .....+++.+|+.++...++.+.+..+.. ....+.+..|++.++|.|--+..+
T Consensus       164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL  220 (944)
T PRK14949        164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL  220 (944)
T ss_pred             HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence            222 12268999999999999999887653222 223567889999999998644433

>PRK04195 replication factor C large subunit; Provisional

Probab=98.76  E-value=3.9e-07  Score=94.30  Aligned_cols=182  Identities=20%  Similarity=0.152  Sum_probs=110.2

Q ss_pred             ccccccccchhHHHHHHHHHHhc---CC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKK---GS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~---~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      |..+..++|++...+.|..|+..   +. .+.+.|+|++|+||||+|+.+++...    +. .+-++.+.... ...+..
T Consensus        10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~-~~~i~~   83 (482)
T PRK04195         10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRT-ADVIER   83 (482)
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEccccccc-HHHHHH
Confidence            44566678999999998888853   22 57899999999999999999999874    32 22233333222 222333


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------cccccc--CCCCcEEEEEeCchH-HHh-h
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGI--PANCCKILLTTRLQQ-VCD-R  294 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~--~~~~~~iivTtr~~~-v~~-~  294 (513)
                      ++.......                .+.+.++.+|||||++....      ...+..  ...+..||+|+.+.. ... .
T Consensus        84 ~i~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~  147 (482)
T PRK04195         84 VAGEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRE  147 (482)
T ss_pred             HHHHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhh
Confidence            322211100                11212678999999976432      222211  122556777765432 111 1


Q ss_pred             c-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          295 M-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       295 ~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      + .....+.+.+++..+....+.+.+......- ..+....|++.++|..-.+......+
T Consensus       148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~  206 (482)
T PRK04195        148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAI  206 (482)
T ss_pred             HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            1 2236789999999999988887764332222 25778999999999877655433333

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.75  E-value=2.3e-07  Score=97.05  Aligned_cols=194  Identities=19%  Similarity=0.208  Sum_probs=114.0

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..++.|..++..+++ +.+.++|+.|+||||+++.+.+.+.....+..       .....-.....|.
T Consensus        11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~   83 (830)
T PRK07003         11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID   83 (830)
T ss_pred             CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence            355677788999999999999988764 46689999999999999999887753211110       0000001111111


Q ss_pred             HH-----hCCC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--ccc----cccCCCCcEEEEEeCchH-HH
Q 044393          227 KW-----LGWE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LET----VGIPANCCKILLTTRLQQ-VC  292 (513)
Q Consensus       227 ~~-----l~~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~iivTtr~~~-v~  292 (513)
                      ..     +... ......++....+.... .-..++.-++|||++.....  +..    +..+..+.++|++|++.. +.
T Consensus        84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp  163 (830)
T PRK07003         84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP  163 (830)
T ss_pred             cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence            00     0000 00111222222222211 11224566899999976532  222    223334778888877643 32


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                      ..+ +-...+.+.+++.++..+.+.+.+..+...- ..+....|++.++|..- ++.++
T Consensus       164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLL  221 (830)
T PRK07003        164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLT  221 (830)
T ss_pred             chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence            222 1226799999999999999998876433222 25677889999998664 55543

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.74  E-value=6.8e-08  Score=90.90  Aligned_cols=177  Identities=14%  Similarity=0.123  Sum_probs=113.5

Q ss_pred             CCccccccccchhHHHH---HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHH
Q 044393          147 HIPRFFSSFETTKSACN---QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQS  223 (513)
Q Consensus       147 ~~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~  223 (513)
                      ..|.....++|.+..+.   -|...+.++..+.+.+|||+|+||||||+.+....+...    ..|+..|....-..-.+
T Consensus       132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR  207 (554)
T KOG2028|consen  132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVR  207 (554)
T ss_pred             cCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHH
Confidence            34555666777766553   355666788889999999999999999999998877653    34677666554444455


Q ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc--ccccccccCCC-CcEEEE--EeCchHHHh---hc
Q 044393          224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKE--LDLETVGIPAN-CCKILL--TTRLQQVCD---RM  295 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~--~~~~~l~~~~~-~~~iiv--Ttr~~~v~~---~~  295 (513)
                      .|+++..                +. ....++|.+|.+|++..-  .+-+.+++... |.-++|  ||.++.+..   .+
T Consensus       208 ~ife~aq----------------~~-~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLl  270 (554)
T KOG2028|consen  208 DIFEQAQ----------------NE-KSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALL  270 (554)
T ss_pred             HHHHHHH----------------HH-HhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHH
Confidence            5554321                11 223349999999999543  33444444444 444443  677765422   12


Q ss_pred             CCcceeecCCCChHhHHHHHHHhcC---C------CCCCC---chHHHHHHHHHHhCCCch
Q 044393          296 GCDTRIKLDALDQAEGLDLLREHAG---I------DVADT---TLTDVSKRVADECKGLPL  344 (513)
Q Consensus       296 ~~~~~~~l~~L~~~e~~~lf~~~~~---~------~~~~~---~~~~~~~~i~~~~~G~PL  344 (513)
                      ..-.++.|++|+.++...++.+...   .      ..+++   -...+.+-++..|+|-.-
T Consensus       271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR  331 (554)
T KOG2028|consen  271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR  331 (554)
T ss_pred             hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence            3337899999999999999887432   1      11121   124566778888888764

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.73  E-value=3.5e-07  Score=90.67  Aligned_cols=199  Identities=15%  Similarity=0.122  Sum_probs=109.9

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHH---H
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQS---E  224 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~---~  224 (513)
                      |..+..++|++..++.|..++..+..+.+.++|++|+||||+|+.+++.......-.....++++.... ....+.   .
T Consensus        11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   90 (337)
T PRK12402         11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPR   90 (337)
T ss_pred             CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcc
Confidence            445666789999999999999888666889999999999999999998875432111223333322110 000000   0


Q ss_pred             HHHHhCCC-CCCC-CHHHHHHHHHHHHHhc--cCCeEEEEEecCCCccc-----ccccc-cCCCCcEEEEEeCchH-HHh
Q 044393          225 LVKWLGWE-LKEK-DEEERADRLRLMFSES--KGRKILIILDDVWKELD-----LETVG-IPANCCKILLTTRLQQ-VCD  293 (513)
Q Consensus       225 i~~~l~~~-~~~~-~~~~~~~~l~~~~~l~--~~~~~LlVLDd~~~~~~-----~~~l~-~~~~~~~iivTtr~~~-v~~  293 (513)
                      ....++.. .... ........+.......  .+.+-+||+||+.....     +..+. ...+.+++|+||.... +..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~  170 (337)
T PRK12402         91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP  170 (337)
T ss_pred             hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence            00000000 0000 0111111111110111  12455899999865421     22221 1223577887775432 222


Q ss_pred             hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393          294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~  348 (513)
                      .+ .....+.+.+++.++...++.+.+...... -..+.+..+++.++|.+-.+..
T Consensus       171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~  225 (337)
T PRK12402        171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL  225 (337)
T ss_pred             hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence            22 122578889999999999998876432222 2367788899999888665443

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.72  E-value=3.5e-07  Score=94.43  Aligned_cols=198  Identities=19%  Similarity=0.174  Sum_probs=113.3

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..++.|.+.+..++. +.+.++|+.|+||||+|+.+.+.+-....-... -. .+.....-.....|.
T Consensus        11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~-g~-~~~PCG~C~sC~~I~   88 (700)
T PRK12323         11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG-GI-TAQPCGQCRACTEID   88 (700)
T ss_pred             CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc-cC-CCCCCcccHHHHHHH
Confidence            355677788999999999999988865 456899999999999999999877532100000 00 000000001111111


Q ss_pred             HH-----hCCCC-CCCCHHHHHHHHHHHHH-hccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCc-hHHH
Q 044393          227 KW-----LGWEL-KEKDEEERADRLRLMFS-ESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRL-QQVC  292 (513)
Q Consensus       227 ~~-----l~~~~-~~~~~~~~~~~l~~~~~-l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~-~~v~  292 (513)
                      ..     +.... .....++..+.+..... -..++.-++|+|++....  .    +..+..+.++..+|++|.+ ..+.
T Consensus        89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl  168 (700)
T PRK12323         89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP  168 (700)
T ss_pred             cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence            00     00000 11122333333332111 123467799999997653  2    2333333446676666665 3343


Q ss_pred             hhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393          293 DRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       293 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~  348 (513)
                      ..+. -...+.+..++.++..+.+.+.+..+.... ..+....|++.++|.|.-...
T Consensus       169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALs  224 (700)
T PRK12323        169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALS  224 (700)
T ss_pred             hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence            3221 126799999999999999988765332222 245668899999999974433

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.72  E-value=6.6e-07  Score=89.10  Aligned_cols=191  Identities=20%  Similarity=0.221  Sum_probs=107.9

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      |..+..++|.+..++.+...+..+.. +.+.++|+.|+||||+|+.+++..........       .+...-.....+..
T Consensus        12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~   84 (363)
T PRK14961         12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEK   84 (363)
T ss_pred             CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhc
Confidence            45566788999999999999987764 46789999999999999999987753211100       00000000111111


Q ss_pred             HhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--ccc----cccCCCCcEEEEEeCch-HHHh
Q 044393          228 WLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LET----VGIPANCCKILLTTRLQ-QVCD  293 (513)
Q Consensus       228 ~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~iivTtr~~-~v~~  293 (513)
                      .....      ......++....+.... .-..+++-++|+||+.....  +..    +..+.+...+|++|.+. .+..
T Consensus        85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~  164 (363)
T PRK14961         85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK  164 (363)
T ss_pred             CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence            00000      00011112111111100 11123567999999866532  222    22333366777766553 3332


Q ss_pred             hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      .+ +....+++.+++.++..+.+...+..... .-.++.+..|++.++|.|-.+.
T Consensus       165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al  218 (363)
T PRK14961        165 TILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDAL  218 (363)
T ss_pred             HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence            22 12267999999999999988876643221 1225677889999999886443

>PLN03025 replication factor C subunit; Provisional

Probab=98.72  E-value=5e-07  Score=88.49  Aligned_cols=181  Identities=17%  Similarity=0.197  Sum_probs=107.8

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCC-eEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD-EVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..++.|..++..+..+.+.++|++|+||||+|..+++...... |. .+.-.+.+..... +..++++
T Consensus         8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~-~~vr~~i   85 (319)
T PLN03025          8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGI-DVVRNKI   85 (319)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccH-HHHHHHH
Confidence            3555667788888899998888887777788999999999999999998874321 21 1111222221111 1222222


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccc-cccCCCCcEEEEEeCch-HHHhhc-CCc
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LET-VGIPANCCKILLTTRLQ-QVCDRM-GCD  298 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~-l~~~~~~~~iivTtr~~-~v~~~~-~~~  298 (513)
                      +.+....               .....++.-+++|||+.....     +.. +..+.+.+++|+++... .+...+ ...
T Consensus        86 ~~~~~~~---------------~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc  150 (319)
T PLN03025         86 KMFAQKK---------------VTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC  150 (319)
T ss_pred             HHHHhcc---------------ccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence            2111000               011124567999999976532     211 11222356777776542 221111 112


Q ss_pred             ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ..+++.+++.++....+...+..+...- .++....|++.++|..-.+
T Consensus       151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~a  197 (319)
T PLN03025        151 AIVRFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQA  197 (319)
T ss_pred             hcccCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence            5789999999999999888775332222 2567788999999876443

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.70  E-value=6.4e-07  Score=92.17  Aligned_cols=195  Identities=17%  Similarity=0.132  Sum_probs=109.3

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+...+.|..++..+.. +.+.++|++|+||||+|+.+++.......+....|.|.+-. .+......-+
T Consensus         9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv   87 (504)
T PRK14963          9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV   87 (504)
T ss_pred             CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence            345566778999999999999988764 45699999999999999999988753222211112111000 0000000000


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHHHhhc-C
Q 044393          227 KWLGWELKEKDEEERADRLRLMFS--ESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQVCDRM-G  296 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v~~~~-~  296 (513)
                      ..+... .....+...+ +...+.  -..+++-++|+|+++...  .+..+    ..+.++..+|++|.. ..+...+ .
T Consensus        88 ~el~~~-~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S  165 (504)
T PRK14963         88 LEIDAA-SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS  165 (504)
T ss_pred             EEeccc-ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence            000000 0111122222 111111  112467799999997542  22222    222235566666654 3332222 2


Q ss_pred             CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ....+++.+++.++..+.+.+.+....... ..+.+..|++.++|.+--+
T Consensus       166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a  214 (504)
T PRK14963        166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA  214 (504)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence            236799999999999999988775332222 2567889999999998644

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.68  E-value=8.2e-07  Score=87.28  Aligned_cols=179  Identities=17%  Similarity=0.183  Sum_probs=107.3

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE--cCCCChHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV--SQDPDIINVQSELV  226 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~  226 (513)
                      |..+..++|++..++.+..++..+..+.+.|+|++|+||||+++.+++...... +.. .++.+  +..... ....+.+
T Consensus        13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~-~~~~~~i   89 (319)
T PRK00440         13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGI-DVIRNKI   89 (319)
T ss_pred             CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccch-HHHHHHH
Confidence            345566789999999999999887767789999999999999999998875432 111 12222  121111 1111111


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccccc-cCCCCcEEEEEeCch-HHHhhc-CCc
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LETVG-IPANCCKILLTTRLQ-QVCDRM-GCD  298 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~l~-~~~~~~~iivTtr~~-~v~~~~-~~~  298 (513)
                      ..+.               .. .......+-++++|++.....     +..+. .+.+.+.+|+++... .+...+ ...
T Consensus        90 ~~~~---------------~~-~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~  153 (319)
T PRK00440         90 KEFA---------------RT-APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC  153 (319)
T ss_pred             HHHH---------------hc-CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence            1110               00 001112466999999865421     22221 222356777776532 111111 112


Q ss_pred             ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      ..+++.+++.++...++...+...... -.++.+..+++.++|.+.-+.
T Consensus       154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~  201 (319)
T PRK00440        154 AVFRFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAI  201 (319)
T ss_pred             heeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence            468999999999999988877533222 225678899999999887543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.68  E-value=5.8e-07  Score=93.01  Aligned_cols=192  Identities=19%  Similarity=0.184  Sum_probs=111.8

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+...+.|..++..+.. +.+.++|+.|+||||+|+.+++.+........       .....-...+.+.
T Consensus        10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~-------~pCg~C~sC~~I~   82 (702)
T PRK14960         10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS-------TPCEVCATCKAVN   82 (702)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC-------CCCccCHHHHHHh
Confidence            356677788999999999999988764 57799999999999999999887643211100       0000000111111


Q ss_pred             HHhCC-----C-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCchH-HH
Q 044393          227 KWLGW-----E-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRLQQ-VC  292 (513)
Q Consensus       227 ~~l~~-----~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~~~-v~  292 (513)
                      ..-..     . ......++....+...- .-..++.-++|+|++....  .    +..+..+.++..+|++|.+.. +.
T Consensus        83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp  162 (702)
T PRK14960         83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP  162 (702)
T ss_pred             cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence            00000     0 00111222222222110 1122467799999997543  1    222223334677888777632 22


Q ss_pred             hh-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          293 DR-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       293 ~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      .. ......+++.+++.++....+.+.+..+...- ..+....|++.++|.+-.+.
T Consensus       163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdAL  217 (702)
T PRK14960        163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDAL  217 (702)
T ss_pred             HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence            22 22236899999999999999988775432222 25677889999999885443

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.68  E-value=2.3e-07  Score=83.11  Aligned_cols=178  Identities=19%  Similarity=0.226  Sum_probs=97.4

Q ss_pred             cCCccccccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH
Q 044393          146 MHIPRFFSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN  220 (513)
Q Consensus       146 ~~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~  220 (513)
                      ...|..+..|+|.++.++.+.-.+.     ++...-+.++||+|+||||||..+++.....  |.   +.  +.. .+. 
T Consensus        17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~--sg~-~i~-   87 (233)
T PF05496_consen   17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---IT--SGP-AIE-   87 (233)
T ss_dssp             HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EE--ECC-C---
T ss_pred             hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---ec--cch-hhh-
Confidence            4567788899999998888765543     2346789999999999999999999998765  32   22  211 110 


Q ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccc----cc-----------cC
Q 044393          221 VQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LET----VG-----------IP  276 (513)
Q Consensus       221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~----l~-----------~~  276 (513)
                                      ...++...+.   .+ + ++-+|.+|++.....         .+.    +.           ..
T Consensus        88 ----------------k~~dl~~il~---~l-~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~  146 (233)
T PF05496_consen   88 ----------------KAGDLAAILT---NL-K-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN  146 (233)
T ss_dssp             ----------------SCHHHHHHHH---T----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred             ----------------hHHHHHHHHH---hc-C-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence                            0011111111   12 2 455788888854310         111    10           11


Q ss_pred             CCCcE-EEEEeCchHHHhhcCCc--ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          277 ANCCK-ILLTTRLQQVCDRMGCD--TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       277 ~~~~~-iivTtr~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      .+..+ |=.|||...+...+...  -..+++..+.+|-..+..+.+..-.. +-.++.+.+|++.|.|-|--..-+-...
T Consensus       147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rv  225 (233)
T PF05496_consen  147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRV  225 (233)
T ss_dssp             ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred             CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            11233 33577765554444332  34579999999999999887753222 2236789999999999998766655554


Q ss_pred             c
Q 044393          354 T  354 (513)
Q Consensus       354 ~  354 (513)
                      +
T Consensus       226 r  226 (233)
T PF05496_consen  226 R  226 (233)
T ss_dssp             C
T ss_pred             H
Confidence            4

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.65  E-value=8.5e-07  Score=82.65  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=99.7

Q ss_pred             hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCC
Q 044393          158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKD  237 (513)
Q Consensus       158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~  237 (513)
                      ....+..+..+......+.+.|+|+.|+|||+|++.+++.....  ...+.++++.....   .                
T Consensus        29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---~----------------   87 (235)
T PRK08084         29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---F----------------   87 (235)
T ss_pred             cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---h----------------
Confidence            34456666666555555789999999999999999999877643  23445555432100   0                


Q ss_pred             HHHHHHHHHHHHHhccCCeEEEEEecCCCcc---cccc----cccC--CCC-cEEEEEeCch---------HHHhhcCCc
Q 044393          238 EEERADRLRLMFSESKGRKILIILDDVWKEL---DLET----VGIP--ANC-CKILLTTRLQ---------QVCDRMGCD  298 (513)
Q Consensus       238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~----l~~~--~~~-~~iivTtr~~---------~v~~~~~~~  298 (513)
                      ..+.    .+  .+.  +.-+|++||+....   .|+.    +...  ..| .++|+||+..         .+...+...
T Consensus        88 ~~~~----~~--~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g  159 (235)
T PRK08084         88 VPEV----LE--GME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG  159 (235)
T ss_pred             hHHH----HH--Hhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC
Confidence            0011    11  111  22489999995431   2221    1111  123 4799999864         333445555


Q ss_pred             ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      ..+.+.+++.++-.+++.+++.... -.-.++...-|++.+.|..-.+..+-
T Consensus       160 ~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l  210 (235)
T PRK08084        160 QIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTL  210 (235)
T ss_pred             ceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence            7899999999999999988664322 22236788888988888666554443

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.65  E-value=1.7e-06  Score=85.52  Aligned_cols=197  Identities=17%  Similarity=0.123  Sum_probs=113.6

Q ss_pred             CCccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEE----EEEcCCCChHHH
Q 044393          147 HIPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGI----ATVSQDPDIINV  221 (513)
Q Consensus       147 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w----v~~~~~~~~~~~  221 (513)
                      +.|......+|.+...+.|...+..+.. ..+.++|+.|+||+|+|..+++.+-.+........    .++... ..-..
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c~~   91 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDHPV   91 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCChH
Confidence            3556667788999999999999988864 46899999999999999999887743221100000    000000 00011


Q ss_pred             HHHHHHHhCCC---------C------CCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCccc------ccccccCCC
Q 044393          222 QSELVKWLGWE---------L------KEKDEEERADRLRLMFS--ESKGRKILIILDDVWKELD------LETVGIPAN  278 (513)
Q Consensus       222 ~~~i~~~l~~~---------~------~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~~------~~~l~~~~~  278 (513)
                      .+.+...-...         .      .....++..+ +...+.  ...+.+.++|+|++.....      +..+..+.+
T Consensus        92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~  170 (365)
T PRK07471         92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA  170 (365)
T ss_pred             HHHHHccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence            11111110000         0      0112233222 222221  1234677999999865532      222333444


Q ss_pred             CcEEEEEeCchH-HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          279 CCKILLTTRLQQ-VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       279 ~~~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +..+|++|++.. +...+ .....+.+.+++.++..+++.+..+..   +  .+....++..++|.|+....+.
T Consensus       171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~ll  239 (365)
T PRK07471        171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRLA  239 (365)
T ss_pred             CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHHh
Confidence            677777887653 32222 223689999999999999998865321   1  2223678999999998665443

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.65  E-value=4.9e-06  Score=87.93  Aligned_cols=164  Identities=15%  Similarity=0.110  Sum_probs=100.4

Q ss_pred             cccchhHHHHHHHHHHhc----CC-ccEEEEEcCCCChHHHHHHHHHhHhhhc---CCCC--eEEEEEEcCCCChHHHHH
Q 044393          154 SFETTKSACNQITEALKK----GS-TKMVGLHGLGGVGKTTLAKFVGNQLRQE---KIFD--EVGIATVSQDPDIINVQS  223 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~----~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~~~~~  223 (513)
                      .+.+|+.+++.|...|..    .. ..++.|+|++|+|||++++.+.+.+...   ....  .++++++..-.+...++.
T Consensus       756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq  835 (1164)
T PTZ00112        756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ  835 (1164)
T ss_pred             cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence            356899999999887743    22 2567899999999999999999877532   1122  355677666677888888


Q ss_pred             HHHHHhCCCCCC--CCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc-----ccccc--cCCCCcEE--EEEeCchH
Q 044393          224 ELVKWLGWELKE--KDEEERADRLRLMFSE--SKGRKILIILDDVWKELD-----LETVG--IPANCCKI--LLTTRLQQ  290 (513)
Q Consensus       224 ~i~~~l~~~~~~--~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~-----~~~l~--~~~~~~~i--ivTtr~~~  290 (513)
                      .|.+++....+.  .........+..  .+  ..+...+|||||+.....     +-.+.  ....+++|  |.+|.+..
T Consensus       836 vI~qqL~g~~P~~GlsS~evLerLF~--~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD  913 (1164)
T PTZ00112        836 VLYKQLFNKKPPNALNSFKILDRLFN--QNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD  913 (1164)
T ss_pred             HHHHHHcCCCCCccccHHHHHHHHHh--hhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence            888888443322  122233333332  22  122346999999965431     11111  11124444  44554322


Q ss_pred             HH--------hhcCCcceeecCCCChHhHHHHHHHhcC
Q 044393          291 VC--------DRMGCDTRIKLDALDQAEGLDLLREHAG  320 (513)
Q Consensus       291 v~--------~~~~~~~~~~l~~L~~~e~~~lf~~~~~  320 (513)
                      +.        ..+. ...+...|++.++-.+++..++.
T Consensus       914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe  950 (1164)
T PTZ00112        914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE  950 (1164)
T ss_pred             cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence            21        1121 23477799999999999998875

>PTZ00202 tuzin; Provisional

Probab=98.65  E-value=1.2e-06  Score=85.71  Aligned_cols=164  Identities=13%  Similarity=0.186  Sum_probs=101.0

Q ss_pred             cCCccccccccchhHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          146 MHIPRFFSSFETTKSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       146 ~~~~~~~~~~~gr~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      ...|.....|+||+.++..|...+...   ..++++|+|++|+|||||++.+.....    +. ..++   ...+..+++
T Consensus       255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~v---Nprg~eElL  326 (550)
T PTZ00202        255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFV---DVRGTEDTL  326 (550)
T ss_pred             cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEE---CCCCHHHHH
Confidence            345666778999999999999988642   246899999999999999999997654    11 2222   222679999


Q ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHH---HhccCCeEEEEEecCCCcccccc-----cccCCC--CcEEEEEeCchHHH
Q 044393          223 SELVKWLGWELKEKDEEERADRLRLMF---SESKGRKILIILDDVWKELDLET-----VGIPAN--CCKILLTTRLQQVC  292 (513)
Q Consensus       223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~---~l~~~~~~LlVLDd~~~~~~~~~-----l~~~~~--~~~iivTtr~~~v~  292 (513)
                      ..++.+||.+.. ....++...+.+.+   ....|++.+||+-= .+...+..     +...+.  -|.|++---.+.+.
T Consensus       327 r~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt  404 (550)
T PTZ00202        327 RSVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT  404 (550)
T ss_pred             HHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence            999999997432 22233444444322   12225667776642 11111111     111222  56666654444332


Q ss_pred             hhc---CCcceeecCCCChHhHHHHHHHhc
Q 044393          293 DRM---GCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       293 ~~~---~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      -..   .--..|.+++|+.++|.++.....
T Consensus       405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~  434 (550)
T PTZ00202        405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI  434 (550)
T ss_pred             hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence            111   112568899999999998877655

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.63  E-value=1.5e-06  Score=84.87  Aligned_cols=171  Identities=16%  Similarity=0.172  Sum_probs=106.3

Q ss_pred             ccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhh----cCCCCeEEEEEE-cCCCChHHHHHHHH
Q 044393          153 SSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQ----EKIFDEVGIATV-SQDPDIINVQSELV  226 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~-~~~~~~~~~~~~i~  226 (513)
                      ...+|.+...+.|...+.++.. +...++|+.|+||||+|+.++..+-.    ..|++...|... +....... .+++.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~   82 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII   82 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence            3456888889999999987764 56789999999999999999987632    245555444332 11112111 22222


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc--ccc----cccccCCCCcEEEEEeCchHH-Hhhc-CCc
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKE--LDL----ETVGIPANCCKILLTTRLQQV-CDRM-GCD  298 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~--~~~----~~l~~~~~~~~iivTtr~~~v-~~~~-~~~  298 (513)
                      +.+..                  .-..+++-++|+|++...  ...    ..+..|.+++.+|++|.+.+. ...+ +..
T Consensus        83 ~~~~~------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc  144 (313)
T PRK05564         83 EEVNK------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC  144 (313)
T ss_pred             HHHhc------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence            22211                  111235667777776443  222    233344458888888876532 2221 223


Q ss_pred             ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      ..+++.+++.++....+.+....     ...+.+..++..++|.|.-+.
T Consensus       145 ~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~  188 (313)
T PRK05564        145 QIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE  188 (313)
T ss_pred             eeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence            68999999999998888776531     113457788999999987554

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=4.8e-06  Score=82.22  Aligned_cols=278  Identities=20%  Similarity=0.221  Sum_probs=164.2

Q ss_pred             ccchhHHHHHHHHHHh----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhC
Q 044393          155 FETTKSACNQITEALK----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLG  230 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~  230 (513)
                      +.+|+.+++++...+.    .+.+.-+.|+|++|+|||+.++.+.........-..++++++....+...++..|++.++
T Consensus        19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~   98 (366)
T COG1474          19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG   98 (366)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence            5689999998887774    333445999999999999999999999876532233789999999999999999999995


Q ss_pred             C-CCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccccc-----ccc-cCCC-Cc--EEEEEeCchHHHhh------
Q 044393          231 W-ELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLE-----TVG-IPAN-CC--KILLTTRLQQVCDR------  294 (513)
Q Consensus       231 ~-~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~-----~l~-~~~~-~~--~iivTtr~~~v~~~------  294 (513)
                      . +..+.+..+....+.+.+... ++.+++|||++....+-.     .+. .+.. .+  -+|.++.+..+...      
T Consensus        99 ~~p~~g~~~~~~~~~l~~~~~~~-~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~  177 (366)
T COG1474          99 KVPLTGDSSLEILKRLYDNLSKK-GKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK  177 (366)
T ss_pred             CCCCCCCchHHHHHHHHHHHHhc-CCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence            3 334455666666676644443 489999999997654321     221 1111 33  45555665443322      


Q ss_pred             --cCCcceeecCCCChHhHHHHHHHhcC----CCCCCCchHHHHHHHHHHhCCCc-hHHHHHHHHh--cCC------ChH
Q 044393          295 --MGCDTRIKLDALDQAEGLDLLREHAG----IDVADTTLTDVSKRVADECKGLP-LAIKVVGSAL--TGR------NAD  359 (513)
Q Consensus       295 --~~~~~~~~l~~L~~~e~~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~~l--~~~------~~~  359 (513)
                        ++. ..+...|-+.+|-.+++..++.    .....+..-+.+..++..-+|-. .||..+-...  +..      +.+
T Consensus       178 s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~  256 (366)
T COG1474         178 SSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSED  256 (366)
T ss_pred             hccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHH
Confidence              222 3478899999999999988774    22233343444455555555432 3333332222  110      222


Q ss_pred             HHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHH--HHhhccccccc
Q 044393          360 EWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGY--AVGLVWYQAES  437 (513)
Q Consensus       360 ~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~--w~a~g~~~~~~  437 (513)
                      .-..+.....                 ...+.-....||. +.|..+......-  ..+....+-..  ++.+.+   ..
T Consensus       257 ~v~~a~~~~~-----------------~~~~~~~~~~L~~-~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~---~~  313 (366)
T COG1474         257 HVREAQEEIE-----------------RDVLEEVLKTLPL-HQKIVLLAIVELT--VEISTGELYDVYESLCERL---RT  313 (366)
T ss_pred             HHHHHHHHhh-----------------HHHHHHHHHcCCH-hHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhh---Cc
Confidence            2222211111                 1123334677887 7776655333221  22333333321  222211   01


Q ss_pred             HHHHHHHHHHHHHHHhHccccce
Q 044393          438 IEKARSLLRGTIKGLKDSSLLLD  460 (513)
Q Consensus       438 ~~~~~~~~~~~l~~L~~~sll~~  460 (513)
                         .......++++|...|++..
T Consensus       314 ---~~~~~~~ii~~L~~lgiv~~  333 (366)
T COG1474         314 ---SQRRFSDIISELEGLGIVSA  333 (366)
T ss_pred             ---hHHHHHHHHHHHHhcCeEEe
Confidence               34466678899999999964

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.62  E-value=2.1e-06  Score=84.33  Aligned_cols=197  Identities=16%  Similarity=0.154  Sum_probs=116.2

Q ss_pred             CCccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCC--CCeEEEEEEcCCCChHHHHH
Q 044393          147 HIPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKI--FDEVGIATVSQDPDIINVQS  223 (513)
Q Consensus       147 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~  223 (513)
                      +.|..+...+|.+.....|...+.++.. +.+.|+|+.|+||||+|..+++.+-....  +...   ............+
T Consensus        17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~   93 (351)
T PRK09112         17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR   93 (351)
T ss_pred             CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence            4566777889999999999999988864 46999999999999999999988754210  1111   0000111111222


Q ss_pred             HHHHHhC-------CC--------CCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCc
Q 044393          224 ELVKWLG-------WE--------LKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCC  280 (513)
Q Consensus       224 ~i~~~l~-------~~--------~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~  280 (513)
                      .+...-.       .+        ......++.. .+..++..  ..++.-++|+|++.....      +..+..+..+.
T Consensus        94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~  172 (351)
T PRK09112         94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA  172 (351)
T ss_pred             HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence            2222100       00        0111223333 33333322  235677999999976532      22222333355


Q ss_pred             EEEEEeCch-HHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          281 KILLTTRLQ-QVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       281 ~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      .+|++|+.. .+...+ +....+++.+++.++..+++.+.....  . ..++.+..+++.++|.|.....+.
T Consensus       173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--~-~~~~~~~~i~~~s~G~pr~Al~ll  241 (351)
T PRK09112        173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--G-SDGEITEALLQRSKGSVRKALLLL  241 (351)
T ss_pred             eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            555555543 332222 122689999999999999998743221  1 224567889999999998665443

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.62  E-value=1.7e-07  Score=87.37  Aligned_cols=92  Identities=14%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC--CChHHHHHHHHHHhCCCCCCCCHHH-------HHH
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD--PDIINVQSELVKWLGWELKEKDEEE-------RAD  243 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~  243 (513)
                      ..+.++|+|++|+|||||++.+++..... +|+...|+++...  .++.++++.+...+-....+.+...       ...
T Consensus        15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~   93 (249)
T cd01128          15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE   93 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence            34899999999999999999999998776 8999999997776  6888888888332211111112211       122


Q ss_pred             HHHHHHHhccCCeEEEEEecCCCc
Q 044393          244 RLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       244 ~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ....  ....|++.+|++|++...
T Consensus        94 ~a~~--~~~~G~~vll~iDei~r~  115 (249)
T cd01128          94 KAKR--LVEHGKDVVILLDSITRL  115 (249)
T ss_pred             HHHH--HHHCCCCEEEEEECHHHh
Confidence            2222  223469999999998654

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.61  E-value=9.8e-07  Score=92.48  Aligned_cols=194  Identities=19%  Similarity=0.173  Sum_probs=112.6

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..+..|...+..+... .+.++|+.|+||||+|+.+++.+.....+..       .....-.....|.
T Consensus        11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~   83 (647)
T PRK07994         11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIE   83 (647)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHH
Confidence            3566777889999999999999887653 4689999999999999999887754211100       0000011111111


Q ss_pred             HHhC-----CC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCc-hHHH
Q 044393          227 KWLG-----WE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRL-QQVC  292 (513)
Q Consensus       227 ~~l~-----~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~-~~v~  292 (513)
                      ..-.     .. ......++....+..+. .-..++.-++|+|++....  .    +..+..+.+..++|++|.+ ..+.
T Consensus        84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl  163 (647)
T PRK07994         84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (647)
T ss_pred             cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence            1000     00 00112222222222211 1123577799999996543  2    2223344446666666555 3333


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      ..+ .-...+.+.+++.++....+.+.+..+.... ..+....|++.++|.+--+..+
T Consensus       164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~l  220 (647)
T PRK07994        164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSL  220 (647)
T ss_pred             hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence            222 1236899999999999999988764322222 2566788999999988744433

>PRK08727 hypothetical protein; Validated

Probab=98.61  E-value=1.2e-06  Score=81.52  Aligned_cols=165  Identities=21%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             cccccch-hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhC
Q 044393          152 FSSFETT-KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLG  230 (513)
Q Consensus       152 ~~~~~gr-~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~  230 (513)
                      +..|++. ...+..+...........+.|+|++|+|||+|++.+++.....+  ..+.|++..+      ....+.    
T Consensus        18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~~----   85 (233)
T PRK08727         18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRLR----   85 (233)
T ss_pred             hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhHH----
Confidence            4444432 23344433333333335799999999999999999998866542  3445554322      111111    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---cccc-ccc-----CCCCcEEEEEeCch---------HHH
Q 044393          231 WELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---DLET-VGI-----PANCCKILLTTRLQ---------QVC  292 (513)
Q Consensus       231 ~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~-l~~-----~~~~~~iivTtr~~---------~v~  292 (513)
                                  ..+.   .+ . +.-+||+||+....   .+.. +..     ...+..||+||+..         .+.
T Consensus        86 ------------~~~~---~l-~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~  148 (233)
T PRK08727         86 ------------DALE---AL-E-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR  148 (233)
T ss_pred             ------------HHHH---HH-h-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence                        1111   11 1 44599999986432   1111 111     11266799999852         223


Q ss_pred             hhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          293 DRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       293 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ..+.....+++++++.++-.+++.+++..... .-.++....|++.++|..-.+
T Consensus       149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~  201 (233)
T PRK08727        149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL  201 (233)
T ss_pred             HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence            33334468999999999999999987643221 222577788888888766555

>COG3903 Predicted ATPase [General function prediction only]

Probab=98.60  E-value=9.4e-08  Score=92.21  Aligned_cols=285  Identities=22%  Similarity=0.261  Sum_probs=177.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCC-CeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF-DEVGIATVSQDPDIINVQSELVKWLGWELKEK--DEEERADRLRLMFSE  251 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~~~l  251 (513)
                      +.+.++|+||+||||++-.+.. ....  | +.+.++....-.+...+.-.....++......  ........+.     
T Consensus        15 RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~-----   86 (414)
T COG3903          15 RLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIG-----   86 (414)
T ss_pred             heeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHh-----
Confidence            8999999999999999999988 4332  5 45556666665566666666666666654321  1122233222     


Q ss_pred             ccCCeEEEEEecCCCccc-----ccccccCCCCcEEEEEeCchHHHhhcCCcceeecCCCChH-hHHHHHHHhcCCCC--
Q 044393          252 SKGRKILIILDDVWKELD-----LETVGIPANCCKILLTTRLQQVCDRMGCDTRIKLDALDQA-EGLDLLREHAGIDV--  323 (513)
Q Consensus       252 ~~~~~~LlVLDd~~~~~~-----~~~l~~~~~~~~iivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~--  323 (513)
                        +++.++++||.....+     +..+....+.-.++.|+|.....   .......+.+|+.. ++.++|...+....  
T Consensus        87 --~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~  161 (414)
T COG3903          87 --DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS  161 (414)
T ss_pred             --hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence              3999999999866543     33333444466788888865332   23456777777765 78899876653111  


Q ss_pred             --CCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHH-HhhcccCCccccccccccccchhhccccCCCCc
Q 044393          324 --ADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDK-LQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGE  400 (513)
Q Consensus       324 --~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~-l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~  400 (513)
                        ....-.....+|.++.+|.|++|...++..+.-...+....++. +..-. +.-......+......+.+||.-|.. 
T Consensus       162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~-~~~r~a~~~~qtl~asl~ws~~lLtg-  239 (414)
T COG3903         162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLT-GGARLAVLRQQTLRASLDWSYALLTG-  239 (414)
T ss_pred             eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHh-cccccchhHHHhccchhhhhhHhhhh-
Confidence              11222567889999999999999999999987654433332221 11100 01111111123678889999999998 


Q ss_pred             cchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHhHccccceeC--CCCcEEecHHHHHHHH
Q 044393          401 DSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDID--DDGFVKMHDIVRDVAI  478 (513)
Q Consensus       401 ~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~--~~~~~~mH~lv~~~a~  478 (513)
                      ..+..|.-++.|...|....    ..|.+.|--.    ....-.....+..|++.|++.-.+  ..-.|+.-+-+|.|+.
T Consensus       240 we~~~~~rLa~~~g~f~~~l----~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal  311 (414)
T COG3903         240 WERALFGRLAVFVGGFDLGL----ALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL  311 (414)
T ss_pred             HHHHHhcchhhhhhhhcccH----HHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            88999999999997765552    2444444211    112223333567888888885433  2224666666666666


Q ss_pred             HHhc
Q 044393          479 WIGK  482 (513)
Q Consensus       479 ~~~~  482 (513)
                      .+..
T Consensus       312 aeL~  315 (414)
T COG3903         312 AELH  315 (414)
T ss_pred             HHHH
Confidence            6554

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.59  E-value=1.8e-06  Score=89.10  Aligned_cols=182  Identities=20%  Similarity=0.271  Sum_probs=108.4

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CCCeE
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IFDEV  207 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~  207 (513)
                      .|..+..++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++.+....                   .|...
T Consensus        11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl   90 (546)
T PRK14957         11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL   90 (546)
T ss_pred             CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence            355677788999999999999988754 4578999999999999999998764311                   11122


Q ss_pred             EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--c----cccccCCCCcE
Q 044393          208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--L----ETVGIPANCCK  281 (513)
Q Consensus       208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~----~~l~~~~~~~~  281 (513)
                      +++.......+. -.+.++                ..+..  .-..+++-++|+||+.....  .    ..+..+.+...
T Consensus        91 ieidaas~~gvd-~ir~ii----------------~~~~~--~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~  151 (546)
T PRK14957         91 IEIDAASRTGVE-ETKEIL----------------DNIQY--MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK  151 (546)
T ss_pred             EEeecccccCHH-HHHHHH----------------HHHHh--hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence            222211111111 111111                11111  11234677999999865432  2    22223333566


Q ss_pred             EEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          282 ILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       282 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                      +|++|.+ ..+...+ .....+++.+++.++....+.+.+...... ..++....|++.++|.+- |+..+
T Consensus       152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s~GdlR~alnlL  221 (546)
T PRK14957        152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHAKGSLRDALSLL  221 (546)
T ss_pred             EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            6655544 3333222 223689999999999988888765432222 225667889999999775 44444

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.58  E-value=2e-07  Score=78.60  Aligned_cols=112  Identities=24%  Similarity=0.285  Sum_probs=77.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc---CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE---KIFDEVGIATVSQDPDIINVQSELVKWLGWELKE-KDEEERADRLRLMFS  250 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~  250 (513)
                      +.+.|+|++|+|||++++.+.......   ..-..++|+.++...+...+...++..++..... .+.......+..  .
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~--~   82 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID--A   82 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH--H
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH--H
Confidence            789999999999999999999987542   1124466888888878999999999999987766 556666677776  4


Q ss_pred             hccCCeEEEEEecCCCc-c--cccccc--cCCCCcEEEEEeCc
Q 044393          251 ESKGRKILIILDDVWKE-L--DLETVG--IPANCCKILLTTRL  288 (513)
Q Consensus       251 l~~~~~~LlVLDd~~~~-~--~~~~l~--~~~~~~~iivTtr~  288 (513)
                      +...+..+||+||+... .  .++.+.  ....+.++|++.+.
T Consensus        83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence            55545579999999764 2  122221  11337777777765

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.58  E-value=1.2e-06  Score=91.44  Aligned_cols=192  Identities=17%  Similarity=0.166  Sum_probs=109.7

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++.+.......   +..+...    .....+.
T Consensus        11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~   83 (709)
T PRK08691         11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQID   83 (709)
T ss_pred             CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHh
Confidence            356677788999999999999988764 4689999999999999999988764321110   0000000    0000000


Q ss_pred             HH-----hCCC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HH
Q 044393          227 KW-----LGWE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VC  292 (513)
Q Consensus       227 ~~-----l~~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~  292 (513)
                      ..     +... ......+.....+.... .-..+++-++|+|++.....      +..+..+.+.+++|++|.+.. +.
T Consensus        84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~  163 (709)
T PRK08691         84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP  163 (709)
T ss_pred             ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence            00     0000 00111122222222110 11124677999999865432      222223334677777776532 22


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      ..+ +....+.+.+++.++....+.+.+......- ..+.+..|++.++|.+.-+.
T Consensus       164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAl  218 (709)
T PRK08691        164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDAL  218 (709)
T ss_pred             hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHH
Confidence            111 1125688899999999999988775433222 25678899999999986443

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.58  E-value=7.4e-07  Score=89.62  Aligned_cols=190  Identities=17%  Similarity=0.190  Sum_probs=110.4

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++.+........   ..+.....    ...+.
T Consensus        13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~   85 (484)
T PRK14956         13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEIT   85 (484)
T ss_pred             CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHH
Confidence            456677788999999999999988865 45899999999999999999987654311110   00111111    11111


Q ss_pred             HHhCCCC------CCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeC-chHHH
Q 044393          227 KWLGWEL------KEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTR-LQQVC  292 (513)
Q Consensus       227 ~~l~~~~------~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr-~~~v~  292 (513)
                      .......      .....+........+. .-..++.-++|+|++....  .+..+    ..+.....+|++|. ...+.
T Consensus        86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~  165 (484)
T PRK14956         86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP  165 (484)
T ss_pred             ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence            1110000      0111222222222111 1223567799999996542  22222    22333555554444 34443


Q ss_pred             hhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          293 DRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       293 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      ..+. ....+.+.+++.++..+.+.+.+......- .++....|++.++|.+--
T Consensus       166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~Rd  218 (484)
T PRK14956        166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRD  218 (484)
T ss_pred             HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHH
Confidence            3322 225799999999999999888765332222 256789999999999853

>PF14516 AAA_35: AAA-like domain

Probab=98.57  E-value=9.6e-06  Score=79.61  Aligned_cols=198  Identities=11%  Similarity=0.082  Sum_probs=120.5

Q ss_pred             cccccccchhHHHHHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-----CChHHHHH
Q 044393          150 RFFSSFETTKSACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-----PDIINVQS  223 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~  223 (513)
                      .+...+++|...-+.+...+.+ |  ..+.|.||-.+|||||...+.+..... .+. .+++++...     .+....++
T Consensus         8 ~~~~~Yi~R~~~e~~~~~~i~~~G--~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~   83 (331)
T PF14516_consen    8 LDSPFYIERPPAEQECYQEIVQPG--SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLR   83 (331)
T ss_pred             CCCCcccCchHHHHHHHHHHhcCC--CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHH
Confidence            4445577888677777777766 6  899999999999999999999888765 243 446665542     23444444


Q ss_pred             HH----HHHhCCCCC--------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccccc----cc----------ccCC
Q 044393          224 EL----VKWLGWELK--------EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLE----TV----------GIPA  277 (513)
Q Consensus       224 ~i----~~~l~~~~~--------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~----~l----------~~~~  277 (513)
                      .+    .++++....        ..+.......+.+.+-...+++.+|+||+++......    .+          ....
T Consensus        84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~  163 (331)
T PF14516_consen   84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN  163 (331)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence            44    444443321        0111222333333221222589999999997553211    11          0111


Q ss_pred             C--CcEEEEEeCchH--HHhh-----cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393          278 N--CCKILLTTRLQQ--VCDR-----MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       278 ~--~~~iivTtr~~~--v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~  348 (513)
                      +  ..-.++..++..  ....     +.....+.|.+|+.+|...|+.++-..     ......+.|...+||+|..+..
T Consensus       164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~  238 (331)
T PF14516_consen  164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQK  238 (331)
T ss_pred             cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHH
Confidence            1  222222222211  1111     122357899999999999998876422     1133489999999999999999


Q ss_pred             HHHHhcCC
Q 044393          349 VGSALTGR  356 (513)
Q Consensus       349 ~~~~l~~~  356 (513)
                      ++..+...
T Consensus       239 ~~~~l~~~  246 (331)
T PF14516_consen  239 ACYLLVEE  246 (331)
T ss_pred             HHHHHHHc
Confidence            99999764

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.57  E-value=2.5e-06  Score=87.14  Aligned_cols=185  Identities=19%  Similarity=0.203  Sum_probs=107.7

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCC-------------------CCeE
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKI-------------------FDEV  207 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~  207 (513)
                      .|..+..++|.+.....|...+..+.. +.+.++||+|+||||+|+.+++.......                   +...
T Consensus         9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv   88 (472)
T PRK14962          9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV   88 (472)
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence            456677788999888888888888765 45899999999999999999887643211                   0011


Q ss_pred             EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--ccccc----ccCCCCcE
Q 044393          208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETV----GIPANCCK  281 (513)
Q Consensus       208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~  281 (513)
                      ..+..+....... .+.+...                +..  .-..+++-++|+|++....  ....+    ..+.+...
T Consensus        89 ~el~aa~~~gid~-iR~i~~~----------------~~~--~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv  149 (472)
T PRK14962         89 IELDAASNRGIDE-IRKIRDA----------------VGY--RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV  149 (472)
T ss_pred             EEEeCcccCCHHH-HHHHHHH----------------Hhh--ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence            1111111111111 1111111                110  1122467799999986442  11222    22223445


Q ss_pred             EEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHHHH
Q 044393          282 ILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVGSA  352 (513)
Q Consensus       282 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~~  352 (513)
                      +|++|.+ ..+...+ .....+.+.+++.++....+.+.+..... .-.++....|++.++|. +.++..+-.+
T Consensus       150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l  222 (472)
T PRK14962        150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQV  222 (472)
T ss_pred             EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            4545443 3333332 22368899999999999998887743221 22256778899888655 5666666553

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.56  E-value=1.7e-06  Score=89.39  Aligned_cols=179  Identities=18%  Similarity=0.194  Sum_probs=109.0

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCC-------------------CCeE
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKI-------------------FDEV  207 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~  207 (513)
                      .|..+..++|.+..++.|..++..+..+ .+.++|+.|+||||+|+.+++.+-....                   +..+
T Consensus        11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~   90 (509)
T PRK14958         11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL   90 (509)
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence            3566777889999999999999887654 5789999999999999999987743211                   1112


Q ss_pred             EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--c----ccccccCCCCc
Q 044393          208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--D----LETVGIPANCC  280 (513)
Q Consensus       208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~  280 (513)
                      +.+..+...                    ..++....+.... .-..++.-++|+|++....  .    +..+..+.+.+
T Consensus        91 ~eidaas~~--------------------~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~  150 (509)
T PRK14958         91 FEVDAASRT--------------------KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV  150 (509)
T ss_pred             EEEcccccC--------------------CHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence            222221111                    1222222222110 1123466799999996542  1    22233344467


Q ss_pred             EEEEEeCch-HHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          281 KILLTTRLQ-QVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       281 ~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      .+|++|.+. .+...+ +....+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+.
T Consensus       151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al  218 (509)
T PRK14958        151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDAL  218 (509)
T ss_pred             EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHH
Confidence            777666543 332222 12256889999999988877766643322222 4567789999999886443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.56  E-value=1.4e-07  Score=96.97  Aligned_cols=141  Identities=22%  Similarity=0.324  Sum_probs=84.5

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-C---CCeEEEEEEcCCCChHH---HHH------
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-I---FDEVGIATVSQDPDIIN---VQS------  223 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~---~~~------  223 (513)
                      |-...++.+.-.+..+  ..|+|+|.+|+|||||.+.+.+...... .   -......+++|......   +..      
T Consensus        14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~   91 (530)
T COG0488          14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF   91 (530)
T ss_pred             CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhh
Confidence            4455666666666677  8999999999999999999999886531 1   11122344555443221   111      


Q ss_pred             ---------------------------------------------HHHHHhCCCCCCC-----CH-HHHHHHHHHHHHhc
Q 044393          224 ---------------------------------------------ELVKWLGWELKEK-----DE-EERADRLRLMFSES  252 (513)
Q Consensus       224 ---------------------------------------------~i~~~l~~~~~~~-----~~-~~~~~~l~~~~~l~  252 (513)
                                                                   .++..++......     +. ......|.+  .+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~--aL~  169 (530)
T COG0488          92 GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR--ALL  169 (530)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHH--HHh
Confidence                                                         1122222221110     11 222333333  344


Q ss_pred             cCCeEEEEEecCCCcccccccc------cCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393          253 KGRKILIILDDVWKELDLETVG------IPANCCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       253 ~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                      . ++=+|+||+++|++|++.+.      ...+| .|||+||++.+.+.+.+ +++.+.
T Consensus       170 ~-~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t-~I~~ld  224 (530)
T COG0488         170 E-EPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVAT-HILELD  224 (530)
T ss_pred             c-CCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhh-heEEec
Confidence            3 67799999999999976652      33446 99999999998887643 444443

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.53  E-value=2.8e-06  Score=84.74  Aligned_cols=172  Identities=15%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             cccccchhHHHHHHHHHHhcCC----------ccEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------
Q 044393          152 FSSFETTKSACNQITEALKKGS----------TKMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------  202 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------  202 (513)
                      +...+|.+..++.|...+..+.          .+.+.++||+|+||||+|..++...-...                   
T Consensus         4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~   83 (394)
T PRK07940          4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT   83 (394)
T ss_pred             hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence            3456788999999999997753          45688999999999999999987653321                   


Q ss_pred             CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------cccccc
Q 044393          203 IFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGI  275 (513)
Q Consensus       203 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~  275 (513)
                      |.+ ..++....                   .....++......... .-..+++-++|+|++.....      +..+..
T Consensus        84 hpD-~~~i~~~~-------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe  143 (394)
T PRK07940         84 HPD-VRVVAPEG-------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE  143 (394)
T ss_pred             CCC-EEEecccc-------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence            111 11111100                   0111122222221100 11124566888899866532      222333


Q ss_pred             CCCCcEEEEEeCch-HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          276 PANCCKILLTTRLQ-QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       276 ~~~~~~iivTtr~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      +.++..+|++|.+. .+...+. ....+.+.+++.++..+.+.+..+.      ..+.+..++..++|.|.....+
T Consensus       144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~l  213 (394)
T PRK07940        144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARRL  213 (394)
T ss_pred             CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHHH
Confidence            44466666666653 3433322 2368999999999999988754431      1456788999999999755443

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.53  E-value=2.7e-06  Score=89.02  Aligned_cols=195  Identities=17%  Similarity=0.188  Sum_probs=110.5

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC--CeEEEEEEcCCCChHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF--DEVGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i  225 (513)
                      |..+..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++.+-.....  .....    .....-.....|
T Consensus        12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i   87 (618)
T PRK14951         12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI   87 (618)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence            45677788999999999999988765 466899999999999999998776421100  00000    000111111111


Q ss_pred             HHHhC-----CC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--c----cccccCCCCcEEEEEeCc-hHH
Q 044393          226 VKWLG-----WE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--L----ETVGIPANCCKILLTTRL-QQV  291 (513)
Q Consensus       226 ~~~l~-----~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~----~~l~~~~~~~~iivTtr~-~~v  291 (513)
                      ...-.     .. ......++..+.+.... .-..++.-++|||++.....  .    ..+..+.+...+|++|.+ ..+
T Consensus        88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki  167 (618)
T PRK14951         88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV  167 (618)
T ss_pred             HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence            10000     00 00112222322222211 11124566999999976532  2    222233346666666544 333


Q ss_pred             Hhh-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393          292 CDR-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       292 ~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~  348 (513)
                      ... ......+++++++.++....+.+.+....... ..+....|++.++|.+--+..
T Consensus       168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~  224 (618)
T PRK14951        168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALS  224 (618)
T ss_pred             hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence            322 22236899999999999999988775332222 256778899999998854443

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=2.8e-06  Score=86.47  Aligned_cols=179  Identities=17%  Similarity=0.169  Sum_probs=109.5

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhc-------------------CCCCeE
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQE-------------------KIFDEV  207 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~  207 (513)
                      .|..+..++|.+...+.|...+..+..+ .+.++|+.|+||||+|+.++..+-..                   ..+..+
T Consensus         8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv   87 (491)
T PRK14964          8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV   87 (491)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence            3556777889999999999988887654 79999999999999999998754211                   011112


Q ss_pred             EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCCCcE
Q 044393          208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPANCCK  281 (513)
Q Consensus       208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~  281 (513)
                      +.++.+....+.+ .++++...                ..  .-..++.-++|+|++.....      +..+..+.+...
T Consensus        88 ~eidaas~~~vdd-IR~Iie~~----------------~~--~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~  148 (491)
T PRK14964         88 IEIDAASNTSVDD-IKVILENS----------------CY--LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK  148 (491)
T ss_pred             EEEecccCCCHHH-HHHHHHHH----------------Hh--ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence            2333222222111 12222111                10  11124667999999854422      222233444666


Q ss_pred             EEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          282 ILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       282 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      +|++|.. ..+...+ .....+.+.+++.++....+.+.+..+...- .++.+..|++.++|.+-.+
T Consensus       149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~a  214 (491)
T PRK14964        149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRNA  214 (491)
T ss_pred             EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence            6666643 3443332 2236789999999999999988776433222 2566788999999988633

>PRK09087 hypothetical protein; Validated

Probab=98.52  E-value=1.5e-06  Score=80.23  Aligned_cols=139  Identities=16%  Similarity=0.128  Sum_probs=87.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+.+.|+|++|+|||+|++.++......       +++..      .....++.                      .+..
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~-------~i~~~------~~~~~~~~----------------------~~~~   88 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDAL-------LIHPN------EIGSDAAN----------------------AAAE   88 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCE-------EecHH------HcchHHHH----------------------hhhc
Confidence            3679999999999999999888754221       33211      11111111                      1111


Q ss_pred             CCeEEEEEecCCCcc-ccccccc-----CCCCcEEEEEeCc---------hHHHhhcCCcceeecCCCChHhHHHHHHHh
Q 044393          254 GRKILIILDDVWKEL-DLETVGI-----PANCCKILLTTRL---------QQVCDRMGCDTRIKLDALDQAEGLDLLREH  318 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~-~~~~l~~-----~~~~~~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~  318 (513)
                         -+|++||+.... +-..+..     ...|..+|+|++.         +.+...+.....+++++++.++-.+++++.
T Consensus        89 ---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~  165 (226)
T PRK09087         89 ---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL  165 (226)
T ss_pred             ---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence               278889996432 1111211     1127789998874         233444555678999999999999999988


Q ss_pred             cCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393          319 AGIDVADTTLTDVSKRVADECKGLPLAIKVVGS  351 (513)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~  351 (513)
                      +..... .-.+++..-|++.+.|..-++..+..
T Consensus       166 ~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~  197 (226)
T PRK09087        166 FADRQL-YVDPHVVYYLVSRMERSLFAAQTIVD  197 (226)
T ss_pred             HHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence            864322 22367888899999988777664333

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.52  E-value=4.3e-06  Score=85.79  Aligned_cols=194  Identities=16%  Similarity=0.168  Sum_probs=110.2

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe-EEEEEEcCCCChHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE-VGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i  225 (513)
                      .|..+...+|.+..+..|...+..+.. +.+.++|+.|+||||+|+.+++.+........ ..+..+...    .....+
T Consensus        16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i   91 (507)
T PRK06645         16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF   91 (507)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence            455667788999999999988877753 57899999999999999999988753211100 000000000    000111


Q ss_pred             HHHhCC------CCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEE-EeCchHH
Q 044393          226 VKWLGW------ELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANCCKILL-TTRLQQV  291 (513)
Q Consensus       226 ~~~l~~------~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iiv-Ttr~~~v  291 (513)
                      ......      .......++....+.... .-..+++-++|+||++....  +..+    ..+.+.+.+|+ ||+...+
T Consensus        92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI  171 (507)
T PRK06645         92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI  171 (507)
T ss_pred             hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence            000000      001112222222222211 11124677999999976422  2222    23333556555 4444444


Q ss_pred             HhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          292 CDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       292 ~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ...+. ....+++.+++.++....+.+.+..+....+ .+....|++.++|.+--+
T Consensus       172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~a  226 (507)
T PRK06645        172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDA  226 (507)
T ss_pred             hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence            43332 2257899999999999999988764332222 566788999999987533

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.51  E-value=1.2e-06  Score=93.62  Aligned_cols=174  Identities=20%  Similarity=0.240  Sum_probs=100.8

Q ss_pred             CccccccccchhHHHH---HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393          148 IPRFFSSFETTKSACN---QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      .|..+..++|.+..+.   .|...+..+....+.++|++|+||||||+.+++.....  |     +.++..........+
T Consensus        23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f-----~~lna~~~~i~dir~   95 (725)
T PRK13341         23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--F-----SSLNAVLAGVKDLRA   95 (725)
T ss_pred             CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--c-----eeehhhhhhhHHHHH
Confidence            4566677889888774   56677777777788999999999999999999876432  3     111110000000011


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccCCC-CcEEEEE--eCchH--HHhhc-C
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIPAN-CCKILLT--TRLQQ--VCDRM-G  296 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~~~-~~~iivT--tr~~~--v~~~~-~  296 (513)
                                      ........+... +++.+|+|||++...  ....+..... +..++++  |.+..  +...+ .
T Consensus        96 ----------------~i~~a~~~l~~~-~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~S  158 (725)
T PRK13341         96 ----------------EVDRAKERLERH-GKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVS  158 (725)
T ss_pred             ----------------HHHHHHHHhhhc-CCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhc
Confidence                            111111111122 367899999996542  2233332223 4444443  33322  21211 1


Q ss_pred             CcceeecCCCChHhHHHHHHHhcCC------CCCCCchHHHHHHHHHHhCCCchH
Q 044393          297 CDTRIKLDALDQAEGLDLLREHAGI------DVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       297 ~~~~~~l~~L~~~e~~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      ....+.+++++.++...++.+.+..      .....-.++....|++.+.|..-.
T Consensus       159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~  213 (725)
T PRK13341        159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS  213 (725)
T ss_pred             cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence            2357999999999999999876641      111122356778899999887543

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.51  E-value=6.3e-06  Score=82.29  Aligned_cols=181  Identities=14%  Similarity=0.202  Sum_probs=107.7

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeE
Q 044393          149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEV  207 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~  207 (513)
                      |..+...+|.+..++.|..++..+.. +.+.++|++|+||||+|+.+........                    +++. 
T Consensus        10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-   88 (355)
T TIGR02397        10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-   88 (355)
T ss_pred             CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence            45566678999999999999987764 4678999999999999999988764321                    1221 


Q ss_pred             EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--ccc----cccCCCCcE
Q 044393          208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LET----VGIPANCCK  281 (513)
Q Consensus       208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~  281 (513)
                      .++....... ....++++..+.                .  .-..+++-++|+|++.....  ...    +..+.+...
T Consensus        89 ~~~~~~~~~~-~~~~~~l~~~~~----------------~--~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~  149 (355)
T TIGR02397        89 IEIDAASNNG-VDDIREILDNVK----------------Y--APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV  149 (355)
T ss_pred             EEeeccccCC-HHHHHHHHHHHh----------------c--CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence            1221111111 111122222111                0  11123566899999854421  222    222233666


Q ss_pred             EEEEeCchH-HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          282 ILLTTRLQQ-VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       282 iivTtr~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +|++|.+.. +...+ .....+++.+++.++..+++...+...... -.++.+..+++.++|.|..+....
T Consensus       150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~l  219 (355)
T TIGR02397       150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLL  219 (355)
T ss_pred             EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHH
Confidence            677765543 22222 223578899999999999988766422211 125678889999999987665443

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.51  E-value=8.9e-07  Score=75.90  Aligned_cols=117  Identities=20%  Similarity=0.127  Sum_probs=69.3

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK  236 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~  236 (513)
                      |++..+..+...+.......+.|+|++|+|||||++.+++.....  -..++++..++..........+...        
T Consensus         2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~--------   71 (151)
T cd00009           2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF--------   71 (151)
T ss_pred             chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence            677888888888877555899999999999999999999988532  2334555544433222111111000        


Q ss_pred             CHHHHHHHHHHHHHhccCCeEEEEEecCCCc-----ccccc----cccC---CCCcEEEEEeCch
Q 044393          237 DEEERADRLRLMFSESKGRKILIILDDVWKE-----LDLET----VGIP---ANCCKILLTTRLQ  289 (513)
Q Consensus       237 ~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~-----~~~~~----l~~~---~~~~~iivTtr~~  289 (513)
                          .......  .....++.+|++||++..     ..+..    +...   ..+..+|+||...
T Consensus        72 ----~~~~~~~--~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~  130 (151)
T cd00009          72 ----LVRLLFE--LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP  130 (151)
T ss_pred             ----hHhHHHH--hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence                0001111  122237789999999853     11111    1111   2477888888864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.51  E-value=1.5e-07  Score=86.89  Aligned_cols=135  Identities=21%  Similarity=0.300  Sum_probs=78.3

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe------------EEEEEEcCCC-----
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE------------VGIATVSQDP-----  216 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~------------~~wv~~~~~~-----  216 (513)
                      +....++.+...+.++  .+++|+||+|+|||||.+.+++-.+....   .+.            ....+++|..     
T Consensus        13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~   90 (258)
T COG1120          13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG   90 (258)
T ss_pred             CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence            3444566666666677  89999999999999999999987764210   000            0111222211     


Q ss_pred             ---------------------C--hHHHHHHHHHHhCCC------CCCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCC
Q 044393          217 ---------------------D--IINVQSELVKWLGWE------LKEKDEEE-RADRLRLMFSESKGRKILIILDDVWK  266 (513)
Q Consensus       217 ---------------------~--~~~~~~~i~~~l~~~------~~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~  266 (513)
                                           +  -.......++.++..      ....+..+ ....+..  .+.+ +.-+|+||++.+
T Consensus        91 ~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr--ALaQ-~~~iLLLDEPTs  167 (258)
T COG1120          91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR--ALAQ-ETPILLLDEPTS  167 (258)
T ss_pred             cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH--HHhc-CCCEEEeCCCcc
Confidence                                 0  011233334444332      11222222 2233333  4444 777999999999


Q ss_pred             cccccccc------c--C-CCCcEEEEEeCchHHHhhcC
Q 044393          267 ELDLETVG------I--P-ANCCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       267 ~~~~~~l~------~--~-~~~~~iivTtr~~~v~~~~~  296 (513)
                      .+|+..-.      .  . ..|..||+++|+.+.+...+
T Consensus       168 ~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya  206 (258)
T COG1120         168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA  206 (258)
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence            98854421      1  1 22789999999998887653

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.50  E-value=4.6e-07  Score=88.08  Aligned_cols=93  Identities=14%  Similarity=0.193  Sum_probs=64.2

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC--ChHHHHHHHHHHhCCCCCCCCHHHH-------H
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP--DIINVQSELVKWLGWELKEKDEEER-------A  242 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-------~  242 (513)
                      +..+...|+|++|+|||||++.+++..... +|+...|+.+.+..  .+.++++++...+-......+....       .
T Consensus       167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i  245 (416)
T PRK09376        167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI  245 (416)
T ss_pred             ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence            344899999999999999999999999876 89999999998887  6677777775322111122222111       1


Q ss_pred             HHHHHHHHhccCCeEEEEEecCCCc
Q 044393          243 DRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       243 ~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      +.... +. ..|+++||++|++...
T Consensus       246 e~Ae~-~~-e~G~dVlL~iDsItR~  268 (416)
T PRK09376        246 EKAKR-LV-EHGKDVVILLDSITRL  268 (416)
T ss_pred             HHHHH-HH-HcCCCEEEEEEChHHH
Confidence            12222 12 3569999999998543

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.49  E-value=4.6e-06  Score=86.70  Aligned_cols=175  Identities=19%  Similarity=0.207  Sum_probs=106.5

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCC-------------------CCeEE
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKI-------------------FDEVG  208 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~  208 (513)
                      |..+..++|.+..++.|..++..+... .+.++|+.|+||||+|+.++..+-....                   |...+
T Consensus        12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~   91 (527)
T PRK14969         12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI   91 (527)
T ss_pred             CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence            456677889999999999999887654 5689999999999999999887643211                   11111


Q ss_pred             EEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcE
Q 044393          209 IATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCK  281 (513)
Q Consensus       209 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~  281 (513)
                      ++..+.                    ....++....+.... .-..+++-++|+|++.....      +..+..+.+...
T Consensus        92 ei~~~~--------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~  151 (527)
T PRK14969         92 EVDAAS--------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK  151 (527)
T ss_pred             Eeeccc--------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence            221111                    111122222222110 11124677999999975532      222333334666


Q ss_pred             EEEEeCch-HHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          282 ILLTTRLQ-QVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       282 iivTtr~~-~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      +|++|.+. .+...+ .....+++.+++.++....+.+.+..+.... .++.+..|++.++|.+-
T Consensus       152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr  215 (527)
T PRK14969        152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMR  215 (527)
T ss_pred             EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence            66666543 222111 1125789999999999988887764322222 25667889999999885

>PF13173 AAA_14: AAA domain

Probab=98.46  E-value=4.6e-07  Score=75.95  Aligned_cols=115  Identities=24%  Similarity=0.194  Sum_probs=71.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      +++.|.|+.|+|||||+++++....   ....+++++............                +....+.+  . ...
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~--~-~~~   60 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLE--L-IKP   60 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHH--h-hcc
Confidence            7899999999999999999998876   123455665444322110000                01122222  2 223


Q ss_pred             CeEEEEEecCCCccccccccc----CCCCcEEEEEeCchHHHhh-----c-CCcceeecCCCChHhH
Q 044393          255 RKILIILDDVWKELDLETVGI----PANCCKILLTTRLQQVCDR-----M-GCDTRIKLDALDQAEG  311 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~~l~~----~~~~~~iivTtr~~~v~~~-----~-~~~~~~~l~~L~~~e~  311 (513)
                      ++.+++||++....+|.....    ..++.+|++|+.+......     + +....+++.||+..|.
T Consensus        61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~  127 (128)
T PF13173_consen   61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF  127 (128)
T ss_pred             CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence            778999999988877665432    1236899999997655422     1 1224689999998763

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.45  E-value=1.6e-06  Score=77.76  Aligned_cols=51  Identities=24%  Similarity=0.392  Sum_probs=35.1

Q ss_pred             cccchhHHHHHHHHHH---hcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC
Q 044393          154 SFETTKSACNQITEAL---KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF  204 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l---~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f  204 (513)
                      .|+||+.+++.+...+   ..+..+.+.|+|++|+|||+|++.++........+
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~   54 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY   54 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence            4789999999999999   23346899999999999999999999998876333

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.44  E-value=4.4e-06  Score=84.23  Aligned_cols=199  Identities=15%  Similarity=0.189  Sum_probs=109.8

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE-EcCCCChHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT-VSQDPDIINVQSEL  225 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i  225 (513)
                      .|..+..++|.+...+.|..++.++..+ .+.++||.|+||||+|..+++.......+....|.. .......-.....+
T Consensus        11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~   90 (397)
T PRK14955         11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF   90 (397)
T ss_pred             CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence            3456677889999999999999887654 588999999999999999998875432111111100 00000000111111


Q ss_pred             HHHhCCC-----C-CCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--cccc----cccCCCCcEEEEEe-CchHH
Q 044393          226 VKWLGWE-----L-KEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLET----VGIPANCCKILLTT-RLQQV  291 (513)
Q Consensus       226 ~~~l~~~-----~-~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~----l~~~~~~~~iivTt-r~~~v  291 (513)
                      .......     . .....++..+....+. .-..+++-++|+||+....  .+..    +..+.+.+.+|++| +...+
T Consensus        91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl  170 (397)
T PRK14955         91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI  170 (397)
T ss_pred             hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence            1100000     0 0111222222222110 1122466789999986543  2222    22333466666555 33333


Q ss_pred             HhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          292 CDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       292 ~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      ...+. ....+++.+++.++....+...+..... .-..+.+..|++.++|.+--+.
T Consensus       171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~  226 (397)
T PRK14955        171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQ  226 (397)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence            32221 1257889999999999888877643221 1226778999999999886443

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.43  E-value=4.7e-06  Score=86.22  Aligned_cols=194  Identities=14%  Similarity=0.145  Sum_probs=108.4

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|++..++.|...+..+.. +.+.++||.|+||||+|+.+++.+........      . ....-.....+.
T Consensus        11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~------~-~Cg~C~sCr~i~   83 (605)
T PRK05896         11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG------D-CCNSCSVCESIN   83 (605)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------C-CCcccHHHHHHH
Confidence            355677788999999999999977654 46889999999999999999988753221110      0 001111111111


Q ss_pred             HHhCCC------CCCCCHHHHHHHHHHHH--HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHH
Q 044393          227 KWLGWE------LKEKDEEERADRLRLMF--SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQV  291 (513)
Q Consensus       227 ~~l~~~------~~~~~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v  291 (513)
                      ......      ......++....+....  ... +++-++|+|++....  ....+    ..+.+...+|++|.. ..+
T Consensus        84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~-~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL  162 (605)
T PRK05896         84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTT-FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI  162 (605)
T ss_pred             cCCCCceEEeccccccCHHHHHHHHHHHHhchhh-CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence            110000      00011122222221111  112 244579999986532  22222    223335555555543 333


Q ss_pred             Hhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHH
Q 044393          292 CDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVG  350 (513)
Q Consensus       292 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~  350 (513)
                      ...+ .....+++.+++.++....+...+......- ..+.+..+++.++|.+- |+..+-
T Consensus       163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLe  222 (605)
T PRK05896        163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILD  222 (605)
T ss_pred             hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHH
Confidence            3222 2236799999999999998888664322111 25667889999999765 444433

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.43  E-value=1.5e-05  Score=75.04  Aligned_cols=187  Identities=16%  Similarity=0.160  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHHHHHHhCC
Q 044393          159 KSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSELVKWLGW  231 (513)
Q Consensus       159 ~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~  231 (513)
                      ...++.|...+...   ..+-+.|+|.+|.|||++++.+.........    --.++.+.....++...+...|+.+++.
T Consensus        43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            45677777777543   3467999999999999999999987754311    1246777888999999999999999999


Q ss_pred             CCCCC-CHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccccccCCC---CcEEEEEeCc--------hH
Q 044393          232 ELKEK-DEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETVGIPAN---CCKILLTTRL--------QQ  290 (513)
Q Consensus       232 ~~~~~-~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l~~~~~---~~~iivTtr~--------~~  290 (513)
                      +.... ...........++..  -+--+||+|++.+.+.         +..+....+   =+-|.+-|+.        .+
T Consensus       123 P~~~~~~~~~~~~~~~~llr~--~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q  200 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRR--LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ  200 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHH--cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence            87543 334444444443322  2555999999966432         122211112   3344455543        22


Q ss_pred             HHhhcCCcceeecCCCChHh-HHHHHHHhc---C-CCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          291 VCDRMGCDTRIKLDALDQAE-GLDLLREHA---G-IDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       291 v~~~~~~~~~~~l~~L~~~e-~~~lf~~~~---~-~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      .++.+   ..+.+.....++ ...|+...-   . .....-...+++..|+..++|+.--+..+-
T Consensus       201 La~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll  262 (302)
T PF05621_consen  201 LASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL  262 (302)
T ss_pred             HHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence            33322   456666655443 444543322   2 111223347889999999999876554443

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.41  E-value=1.4e-06  Score=86.49  Aligned_cols=137  Identities=18%  Similarity=0.250  Sum_probs=80.1

Q ss_pred             cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEEEEEcC---------------
Q 044393          154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGIATVSQ---------------  214 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~---------------  214 (513)
                      +|.+.--....+...+..+  ..|+++||+|+|||||.+.++.+..+...-    ....+....|               
T Consensus       398 ~y~~~~~iy~~l~fgid~~--srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~  475 (614)
T KOG0927|consen  398 GYSDNPMIYKKLNFGIDLD--SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF  475 (614)
T ss_pred             CCCCcchhhhhhhcccCcc--cceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence            3433334556666655556  899999999999999999999988653100    0001111111               


Q ss_pred             ------CCChHHHHHHHHHHhCCCCCCC-------CHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCC---C
Q 044393          215 ------DPDIINVQSELVKWLGWELKEK-------DEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA---N  278 (513)
Q Consensus       215 ------~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~---~  278 (513)
                            +....+..+.++..++......       +..+....+..+ ... ..+-|||||++.++.|+..+-...   +
T Consensus       476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~-l~~-kqP~lLlLDEPtnhLDi~tid~laeaiN  553 (614)
T KOG0927|consen  476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFAR-LAV-KQPHLLLLDEPTNHLDIETIDALAEAIN  553 (614)
T ss_pred             HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHH-HHh-cCCcEEEecCCCcCCCchhHHHHHHHHh
Confidence                  0123345556666666543221       222222233321 222 377899999999999987764222   2


Q ss_pred             --CcEEEEEeCchHHHhh
Q 044393          279 --CCKILLTTRLQQVCDR  294 (513)
Q Consensus       279 --~~~iivTtr~~~v~~~  294 (513)
                        .+.||++||+-.+...
T Consensus       554 e~~Ggvv~vSHDfrlI~q  571 (614)
T KOG0927|consen  554 EFPGGVVLVSHDFRLISQ  571 (614)
T ss_pred             ccCCceeeeechhhHHHH
Confidence              6778889998655443

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.38  E-value=7.8e-06  Score=88.67  Aligned_cols=190  Identities=14%  Similarity=0.128  Sum_probs=107.7

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..++.|...+..+... .+.++|+.|+||||+|+.+++.+.........   .+...    .....+.
T Consensus        10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~   82 (824)
T PRK07764         10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA   82 (824)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence            3456677889999999999999887654 57899999999999999998887532111000   00000    0000000


Q ss_pred             HH-------hCCC-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc-----c-cccccCCCCcEEEEEeCc-hH
Q 044393          227 KW-------LGWE-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD-----L-ETVGIPANCCKILLTTRL-QQ  290 (513)
Q Consensus       227 ~~-------l~~~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~-----~-~~l~~~~~~~~iivTtr~-~~  290 (513)
                      ..       +... ......++......... .-..++.-++|||++.....     + ..+..+...+.+|++|.+ ..
T Consensus        83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k  162 (824)
T PRK07764         83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK  162 (824)
T ss_pred             cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence            00       0000 00011222222211111 12234666899999866531     2 222233336666665544 34


Q ss_pred             HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          291 VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       291 v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      +...+. ....|++..++.++...++.+.+..+.... ..+....|++.++|.+..
T Consensus       163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~  217 (824)
T PRK07764        163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRD  217 (824)
T ss_pred             hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence            443332 236899999999999988888764322222 245668899999998843

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.38  E-value=1.1e-05  Score=84.05  Aligned_cols=197  Identities=15%  Similarity=0.187  Sum_probs=111.4

Q ss_pred             CccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+...+.|...+.++. .+.+.++|+.|+||||+|+.+++.+-........       ..+.-...+.+.
T Consensus        11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~   83 (624)
T PRK14959         11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVT   83 (624)
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHh
Confidence            34556677898989999999998875 4678899999999999999999887532111000       000001111111


Q ss_pred             HHhCCC------CCCCCHHHHHHHHHHHH--HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHH
Q 044393          227 KWLGWE------LKEKDEEERADRLRLMF--SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQV  291 (513)
Q Consensus       227 ~~l~~~------~~~~~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v  291 (513)
                      ......      ......++... +.+.+  .-..+++-++|+|++....  ....+    ..+.+...+|++|.. ..+
T Consensus        84 ~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl  162 (624)
T PRK14959         84 QGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF  162 (624)
T ss_pred             cCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence            100000      00011111111 11111  1122467799999996552  12222    223335666665654 333


Q ss_pred             Hhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 044393          292 CDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP-LAIKVVGSAL  353 (513)
Q Consensus       292 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~~l  353 (513)
                      ...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+ .|+..+..++
T Consensus       163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll  225 (624)
T PRK14959        163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL  225 (624)
T ss_pred             hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3222 122578999999999999988766432211 22567888999999966 5666665444

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.38  E-value=1.1e-05  Score=74.32  Aligned_cols=156  Identities=16%  Similarity=0.131  Sum_probs=91.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|+.|+|||.|++.+++.......-..+++++      ..+....+...+..    ....    .+..  .+.  
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~----~~~~----~~~~--~~~--   96 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD----GEIE----EFKD--RLR--   96 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT----TSHH----HHHH--HHC--
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc----ccch----hhhh--hhh--
Confidence            5789999999999999999999886542223344553      33444455444322    1111    1222  222  


Q ss_pred             CeEEEEEecCCCccc---ccc-ccc-----CCCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393          255 RKILIILDDVWKELD---LET-VGI-----PANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR  316 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~---~~~-l~~-----~~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~  316 (513)
                      .-=+|++||+.....   ++. +..     ...|.++|+|++..         .+...+...-.+++++++.++..+++.
T Consensus        97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~  176 (219)
T PF00308_consen   97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ  176 (219)
T ss_dssp             TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred             cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence            344899999965432   211 111     11278999999752         334445555789999999999999999


Q ss_pred             HhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          317 EHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      +.+...... -.++++.-|++.+.+..-.+..+
T Consensus       177 ~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~  208 (219)
T PF00308_consen  177 KKAKERGIE-LPEEVIEYLARRFRRDVRELEGA  208 (219)
T ss_dssp             HHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred             HHHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence            888533222 33677788888877655544433

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.38  E-value=6.6e-06  Score=76.51  Aligned_cols=160  Identities=14%  Similarity=0.101  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCH
Q 044393          160 SACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE  238 (513)
Q Consensus       160 ~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~  238 (513)
                      ..+..+..+... .....+.|+|+.|+|||+||+.+++...... . ...+++.....      ..    +         
T Consensus        27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~------~~----~---------   85 (227)
T PRK08903         27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPL------LA----F---------   85 (227)
T ss_pred             HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhH------HH----H---------
Confidence            444555555442 2346899999999999999999998764331 2 23344332210      00    0         


Q ss_pred             HHHHHHHHHHHHhccCCeEEEEEecCCCccccc--cc---ccC--CCCc-EEEEEeCchHHH--------hhcCCcceee
Q 044393          239 EERADRLRLMFSESKGRKILIILDDVWKELDLE--TV---GIP--ANCC-KILLTTRLQQVC--------DRMGCDTRIK  302 (513)
Q Consensus       239 ~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~--~l---~~~--~~~~-~iivTtr~~~v~--------~~~~~~~~~~  302 (513)
                              .  .. . ..-+|++||+.......  .+   ...  ..+. .+|+|++.....        ..+.....++
T Consensus        86 --------~--~~-~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~  153 (227)
T PRK08903         86 --------D--FD-P-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYE  153 (227)
T ss_pred             --------h--hc-c-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEE
Confidence                    0  11 1 33478999996542211  11   111  1133 366666643221        1222236889


Q ss_pred             cCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          303 LDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       303 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      +.+++.++-..++.+.+.... -.-.++....+++.+.|++..+..+...+
T Consensus       154 l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l  203 (227)
T PRK08903        154 LKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL  203 (227)
T ss_pred             ecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            999999887777776543221 12235778889999999999887666554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.38  E-value=1e-06  Score=77.73  Aligned_cols=135  Identities=19%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-------------------EEcC
Q 044393          154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-------------------TVSQ  214 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-------------------~~~~  214 (513)
                      ..+|....++.+.-.+.++  .+++|+||+|+|||||.+.+..-...+.   +.+++                   -|-|
T Consensus        10 K~fg~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~~~R~~vGmVFQ   84 (240)
T COG1126          10 KSFGDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKVGMVFQ   84 (240)
T ss_pred             EEeCCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHHHHHHhcCeecc
Confidence            3445555666666666677  8999999999999999999987666531   12222                   1223


Q ss_pred             CCChH---HHHH----------------------HHHHHhCCCCC-----C--CCHHHHHHHHHHHHHhccCCeEEEEEe
Q 044393          215 DPDII---NVQS----------------------ELVKWLGWELK-----E--KDEEERADRLRLMFSESKGRKILIILD  262 (513)
Q Consensus       215 ~~~~~---~~~~----------------------~i~~~l~~~~~-----~--~~~~~~~~~l~~~~~l~~~~~~LlVLD  262 (513)
                      .++++   .++.                      +++..++....     .  ..-.+..-.+..  .+.- ++-++.+|
T Consensus        85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR--ALaM-~P~vmLFD  161 (240)
T COG1126          85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR--ALAM-DPKVMLFD  161 (240)
T ss_pred             cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH--HHcC-CCCEEeec
Confidence            33221   1111                      22222222110     0  011111222222  4444 66699999


Q ss_pred             cCCCccccccccc--------CCCCcEEEEEeCchHHHhhcC
Q 044393          263 DVWKELDLETVGI--------PANCCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       263 d~~~~~~~~~l~~--------~~~~~~iivTtr~~~v~~~~~  296 (513)
                      ++++.+|.+-+..        ...|.+.|++||.-.+|..+.
T Consensus       162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va  203 (240)
T COG1126         162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA  203 (240)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence            9999988665432        223899999999988887763

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.37  E-value=1.4e-05  Score=71.89  Aligned_cols=156  Identities=21%  Similarity=0.220  Sum_probs=91.0

Q ss_pred             HHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhc--------------------CCCCeEEEEEEcCCCChHHHH
Q 044393          164 QITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQE--------------------KIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       164 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      .|.+.+.++.. +.+.++|+.|+||||+|+.+.......                    .+.+. .++.........+..
T Consensus         3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i   81 (188)
T TIGR00678         3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV   81 (188)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence            45566666655 679999999999999999998887542                    11111 121111110011111


Q ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--cc----ccccCCCCcEEEEEeCch-HHHhhc
Q 044393          223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LE----TVGIPANCCKILLTTRLQ-QVCDRM  295 (513)
Q Consensus       223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~----~l~~~~~~~~iivTtr~~-~v~~~~  295 (513)
                      +++++.+..                  .-..+.+-++|+||+.....  ..    .+..+.+.+.+|++|++. .+...+
T Consensus        82 ~~i~~~~~~------------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i  143 (188)
T TIGR00678        82 RELVEFLSR------------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI  143 (188)
T ss_pred             HHHHHHHcc------------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence            122221110                  11124677999999865422  11    222333366777777653 222222


Q ss_pred             -CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          296 -GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       296 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                       .....+.+.+++.++..+.+.+. +   .   ..+.+..|++.++|.|..
T Consensus       144 ~sr~~~~~~~~~~~~~~~~~l~~~-g---i---~~~~~~~i~~~~~g~~r~  187 (188)
T TIGR00678       144 RSRCQVLPFPPLSEEALLQWLIRQ-G---I---SEEAAELLLALAGGSPGA  187 (188)
T ss_pred             HhhcEEeeCCCCCHHHHHHHHHHc-C---C---CHHHHHHHHHHcCCCccc
Confidence             12268999999999999999886 2   1   146788999999998863

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.36  E-value=2.7e-05  Score=77.13  Aligned_cols=40  Identities=33%  Similarity=0.473  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+..+...+..+  ..++|+||+|+|||||++.+..-...
T Consensus       349 ~pil~~isF~l~~G--~~lgIIGPSgSGKSTLaR~lvG~w~p  388 (580)
T COG4618         349 KPILKGISFALQAG--EALGIIGPSGSGKSTLARLLVGIWPP  388 (580)
T ss_pred             CcceecceeEecCC--ceEEEECCCCccHHHHHHHHHccccc
Confidence            45667778888888  89999999999999999999877654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=6.6e-07  Score=86.27  Aligned_cols=143  Identities=16%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc------CCCCeEEEEEE------cCCCCh
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE------KIFDEVGIATV------SQDPDI  218 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~------~~f~~~~wv~~------~~~~~~  218 (513)
                      ...+|.|.+..+..+..-+.-+  +.|+|+||+|+|||||.+.+...+.+.      .|--.+-|..-      ....++
T Consensus       592 VtFgy~gqkpLFkkldFGiDmd--SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp  669 (807)
T KOG0066|consen  592 VTFGYPGQKPLFKKLDFGIDMD--SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETP  669 (807)
T ss_pred             ccccCCCCCchhhccccccccc--ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCH
Confidence            3445667777777777666555  899999999999999999999887653      11111223321      111122


Q ss_pred             HHHHHH-----------HHHHhCCCCC-------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCC---
Q 044393          219 INVQSE-----------LVKWLGWELK-------EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPA---  277 (513)
Q Consensus       219 ~~~~~~-----------i~~~l~~~~~-------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~---  277 (513)
                      .+.+..           -+-.++....       ..+..+.......  .+.-+.+-+||||++.+.+|++.+-...   
T Consensus       670 ~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala--eLal~~PDvlILDEPTNNLDIESIDALaEAI  747 (807)
T KOG0066|consen  670 VEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA--ELALGGPDVLILDEPTNNLDIESIDALAEAI  747 (807)
T ss_pred             HHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH--HHhcCCCCEEEecCCCCCcchhhHHHHHHHH
Confidence            221111           1111121111       0111111111111  2333467799999999999988774322   


Q ss_pred             C--CcEEEEEeCchHHHhhcCC
Q 044393          278 N--CCKILLTTRLQQVCDRMGC  297 (513)
Q Consensus       278 ~--~~~iivTtr~~~v~~~~~~  297 (513)
                      +  .+-||++||++.+....++
T Consensus       748 ney~GgVi~VsHDeRLi~eT~C  769 (807)
T KOG0066|consen  748 NEYNGGVIMVSHDERLIVETDC  769 (807)
T ss_pred             HhccCcEEEEecccceeeecCc
Confidence            2  6778888998876554433

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.35  E-value=1.2e-05  Score=84.27  Aligned_cols=197  Identities=16%  Similarity=0.157  Sum_probs=112.9

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe--EEEEEEcCCCChHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE--VGIATVSQDPDIINVQSE  224 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~  224 (513)
                      .|..+..++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++.+........  ..+-    ....-...+.
T Consensus        19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~   94 (598)
T PRK09111         19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA   94 (598)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence            356677788999999999999988864 46899999999999999999987753311100  0000    0000111122


Q ss_pred             HHHHhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cc----ccccCCCCcEEEEEeC-chH
Q 044393          225 LVKWLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LE----TVGIPANCCKILLTTR-LQQ  290 (513)
Q Consensus       225 i~~~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~----~l~~~~~~~~iivTtr-~~~  290 (513)
                      |.......      ......++....+.... .-..+++-++|+|++.....  ..    .+..+.+++.+|++|. ...
T Consensus        95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k  174 (598)
T PRK09111         95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK  174 (598)
T ss_pred             HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence            22111110      01112223222222110 11123566899999855431  22    2223444667666554 333


Q ss_pred             HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          291 VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       291 v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      +...+. ....+.+.+++.++....+.+.+......- ..+.+..|++.++|.+.-+...
T Consensus       175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~  233 (598)
T PRK09111        175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSL  233 (598)
T ss_pred             hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence            332221 226789999999999999988765332222 2467788999999998755433

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.34  E-value=1.7e-05  Score=79.47  Aligned_cols=179  Identities=15%  Similarity=0.177  Sum_probs=103.8

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC------CCCeEEEEEEcCCC-ChH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK------IFDEVGIATVSQDP-DII  219 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~------~f~~~~wv~~~~~~-~~~  219 (513)
                      .|..+..++|.+...+.+...+..+.. +.+.++|+.|+||||+|+.+.+......      .|...+ +...... ...
T Consensus        12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~   90 (367)
T PRK14970         12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSV   90 (367)
T ss_pred             CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCH
Confidence            345566778999999999999988764 4788999999999999999988765321      111111 1111100 001


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEEEeC-chHHH
Q 044393          220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LETV----GIPANCCKILLTTR-LQQVC  292 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iivTtr-~~~v~  292 (513)
                      +...++++.+...                 ... +++-++++||+.....  +..+    ..+.+.+.+|++|. ...+.
T Consensus        91 ~~i~~l~~~~~~~-----------------p~~-~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~  152 (367)
T PRK14970         91 DDIRNLIDQVRIP-----------------PQT-GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII  152 (367)
T ss_pred             HHHHHHHHHHhhc-----------------ccc-CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence            1122222211100                 112 3566899999864322  2222    12222455555553 32222


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ..+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+-.+
T Consensus       153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~  206 (367)
T PRK14970        153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDA  206 (367)
T ss_pred             HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence            221 222578999999999998888766432221 12577888999999876633

>TIGR00767 rho transcription termination factor Rho

Probab=98.34  E-value=2.7e-06  Score=83.26  Aligned_cols=91  Identities=10%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC--CChHHHHHHHHHHhCCCCCCCCHHH-------HHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD--PDIINVQSELVKWLGWELKEKDEEE-------RADR  244 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~~  244 (513)
                      .+.++|+|++|+|||||++.+++..... +|+...|+.+.+.  .++.++++.++..+-....+.+...       ..+.
T Consensus       168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~  246 (415)
T TIGR00767       168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK  246 (415)
T ss_pred             CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence            3899999999999999999999988765 8999899999866  6888888888543322211112211       1122


Q ss_pred             HHHHHHhccCCeEEEEEecCCCc
Q 044393          245 LRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       245 l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ...  ....|++.+|++|++...
T Consensus       247 Ae~--~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       247 AKR--LVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHH--HHHcCCCeEEEEEChhHH
Confidence            222  223579999999998544

Members of this family differ in the specificity of RNA binding.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.34  E-value=6.8e-06  Score=83.79  Aligned_cols=162  Identities=15%  Similarity=0.092  Sum_probs=100.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|+.|+|||+|++.+++.......-..+++++      ..++...+...++...      .....+..  .. . 
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~--~~-~-  205 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKN--EI-C-  205 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHH--Hh-c-
Confidence            5689999999999999999999775432223344443      2345555555543210      11112222  12 2 


Q ss_pred             CeEEEEEecCCCcc---c-ccccccC-----CCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393          255 RKILIILDDVWKEL---D-LETVGIP-----ANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR  316 (513)
Q Consensus       255 ~~~LlVLDd~~~~~---~-~~~l~~~-----~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~  316 (513)
                      ..-+||+||+....   . .+.+...     ..+..||+||...         .+...+...-.+.+++++.++-.+++.
T Consensus       206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~  285 (450)
T PRK14087        206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK  285 (450)
T ss_pred             cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence            44589999996442   1 1222111     1266788887743         223334445678899999999999999


Q ss_pred             HhcCCCCC-CCchHHHHHHHHHHhCCCchHHHHHHHH
Q 044393          317 EHAGIDVA-DTTLTDVSKRVADECKGLPLAIKVVGSA  352 (513)
Q Consensus       317 ~~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~~~  352 (513)
                      +.+..... ..-.++...-|++.++|.|-.+.-+...
T Consensus       286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~  322 (450)
T PRK14087        286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR  322 (450)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence            88753221 1234788899999999999877655543

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.33  E-value=1.8e-05  Score=83.20  Aligned_cols=196  Identities=15%  Similarity=0.177  Sum_probs=108.2

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE-EcCCCChHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT-VSQDPDIINVQSEL  225 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i  225 (513)
                      .|..+..++|.+..+..|...+..+.. +.+.++|+.|+||||+|+.+++.+-.....+...|.. +......-...+.+
T Consensus        11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~   90 (620)
T PRK14954         11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF   90 (620)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence            355667788999999999999988765 4588999999999999999988875422111000110 00000001111111


Q ss_pred             HHHhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--ccc----cccCCCCcEEEEEe-CchHH
Q 044393          226 VKWLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LET----VGIPANCCKILLTT-RLQQV  291 (513)
Q Consensus       226 ~~~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~----l~~~~~~~~iivTt-r~~~v  291 (513)
                      ...-...      ......++....+..+. .-..+++-++|+||+.....  ...    +..+.+.+.+|++| +...+
T Consensus        91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL  170 (620)
T PRK14954         91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI  170 (620)
T ss_pred             hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence            1100000      00111233333222210 11224666899999865432  222    22333355555555 43444


Q ss_pred             Hhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          292 CDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       292 ~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|..-
T Consensus       171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr  223 (620)
T PRK14954        171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR  223 (620)
T ss_pred             hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence            3332 233689999999999888888765422211 125678899999999665

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.33  E-value=1.9e-05  Score=82.47  Aligned_cols=194  Identities=15%  Similarity=0.139  Sum_probs=108.2

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+...+.|..++..+... .+.++|+.|+||||+|+.+++.+........   ..+...    .....+.
T Consensus         8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C----~~C~~i~   80 (584)
T PRK14952          8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPCGVC----ESCVALA   80 (584)
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---Cccccc----HHHHHhh
Confidence            3556677889999999999999888654 4689999999999999999987653211100   000000    0011111


Q ss_pred             HHhC-------CCC-CCCCHHHHHHHHHHHHH-hccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEe-CchH
Q 044393          227 KWLG-------WEL-KEKDEEERADRLRLMFS-ESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTT-RLQQ  290 (513)
Q Consensus       227 ~~l~-------~~~-~~~~~~~~~~~l~~~~~-l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTt-r~~~  290 (513)
                      ..-+       ... .....++.......... -..+++-++|+|++....  .    +..+..+.+...+|++| ....
T Consensus        81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k  160 (584)
T PRK14952         81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK  160 (584)
T ss_pred             cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence            0000       000 00112222221111111 112466699999985442  1    22222333355555555 4444


Q ss_pred             HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          291 VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       291 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                      +...+ +....+++.+++.++..+.+.+.+......- ..+.+..|++.++|.+- ++..+
T Consensus       161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~L  220 (584)
T PRK14952        161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVL  220 (584)
T ss_pred             hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence            43332 2236899999999999988887665322222 24567888999999874 44443

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.32  E-value=1.3e-05  Score=87.99  Aligned_cols=181  Identities=13%  Similarity=0.105  Sum_probs=103.0

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEE-EEEcCCCChHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGI-ATVSQDPDIINVQS  223 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~  223 (513)
                      +....+++||+.++.+++..|......-+.++|++|+||||+|+.++........    .+..+| +.++.-        
T Consensus       183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l--------  254 (852)
T TIGR03345       183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL--------  254 (852)
T ss_pred             CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh--------
Confidence            4566778999999999999988776677889999999999999999998754311    122222 211110        


Q ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccC-C--CCcEEEEEeCchHH
Q 044393          224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIP-A--NCCKILLTTRLQQV  291 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~-~--~~~~iivTtr~~~v  291 (513)
                        ..  +....+.-.......+..  ....+++.+|++|++....         +...+..+ .  +..++|-+|...+.
T Consensus       255 --~a--g~~~~ge~e~~lk~ii~e--~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~  328 (852)
T TIGR03345       255 --QA--GASVKGEFENRLKSVIDE--VKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY  328 (852)
T ss_pred             --hc--ccccchHHHHHHHHHHHH--HHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence              00  000011111122222222  1112478999999985432         21112212 1  24667777765332


Q ss_pred             Hhh-------cCCcceeecCCCChHhHHHHHHHhcC---CCCCCCchHHHHHHHHHHhCCCc
Q 044393          292 CDR-------MGCDTRIKLDALDQAEGLDLLREHAG---IDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       292 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      ...       ......+.+++++.++..+++.....   ....-.-..+....+++.+.+..
T Consensus       329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi  390 (852)
T TIGR03345       329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI  390 (852)
T ss_pred             hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence            111       11236899999999999999754432   11111122555666777776544

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=2.5e-05  Score=80.26  Aligned_cols=181  Identities=16%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhc---C----------------CCCeE
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQE---K----------------IFDEV  207 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~---~----------------~f~~~  207 (513)
                      .|..+..++|.+.....|..++..+.. +.+.++|+.|+||||+|+.++..+...   .                .+...
T Consensus        11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~   90 (486)
T PRK14953         11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL   90 (486)
T ss_pred             CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence            345667788999999999999988754 456789999999999999998876421   0                01111


Q ss_pred             EEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH--HhccCCeEEEEEecCCCccc------ccccccCCCC
Q 044393          208 GIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF--SESKGRKILIILDDVWKELD------LETVGIPANC  279 (513)
Q Consensus       208 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~--~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~  279 (513)
                      ..+..+..                    ...++... +....  .-..+++-++|+|++.....      +..+..+.+.
T Consensus        91 ~eidaas~--------------------~gvd~ir~-I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~  149 (486)
T PRK14953         91 IEIDAASN--------------------RGIDDIRA-LRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR  149 (486)
T ss_pred             EEEeCccC--------------------CCHHHHHH-HHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence            11111110                    11111111 11111  11124677999999865421      2222233335


Q ss_pred             cEEEEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          280 CKILLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       280 ~~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      ..+|++|.+ ..+...+ .....+.+.+++.++....+.+.+...... ...+.+..|++.++|.+..+....
T Consensus       150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~L  221 (486)
T PRK14953        150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASLL  221 (486)
T ss_pred             eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            555555543 3333222 223578999999999998888866432222 225667889999999876444333

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=1.2e-06  Score=93.88  Aligned_cols=133  Identities=20%  Similarity=0.230  Sum_probs=72.5

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC---CCC-eEEEEEEcCCC----ChH-HHH-----
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFD-EVGIATVSQDP----DII-NVQ-----  222 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~-~~~wv~~~~~~----~~~-~~~-----  222 (513)
                      +....++.+...+..+  .+++|+|++|+|||||++.+++......   .+. ..-..++++..    ... .++     
T Consensus       323 ~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~  400 (638)
T PRK10636        323 GDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLAR  400 (638)
T ss_pred             CCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHH
Confidence            3333555555555566  8999999999999999999998865421   111 12233444431    110 111     


Q ss_pred             ----------HHHHHHhCCCCC-------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cCCC
Q 044393          223 ----------SELVKWLGWELK-------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETVG------IPAN  278 (513)
Q Consensus       223 ----------~~i~~~l~~~~~-------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~  278 (513)
                                ..++..++....       ..+..+ ..-.+..  .+.. ++-+||||++.+.+|.....      ... 
T Consensus       401 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~--~l~~-~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-  476 (638)
T PRK10636        401 LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLAL--IVWQ-RPNLLLLDEPTNHLDLDMRQALTEALIDF-  476 (638)
T ss_pred             hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHH--HHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-
Confidence                      122222222100       001111 1111111  2333 66699999999998754331      222 


Q ss_pred             CcEEEEEeCchHHHhhc
Q 044393          279 CCKILLTTRLQQVCDRM  295 (513)
Q Consensus       279 ~~~iivTtr~~~v~~~~  295 (513)
                      ++.||++||+......+
T Consensus       477 ~gtvi~vSHd~~~~~~~  493 (638)
T PRK10636        477 EGALVVVSHDRHLLRST  493 (638)
T ss_pred             CCeEEEEeCCHHHHHHh
Confidence            34899999998877655

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.29  E-value=3.3e-05  Score=81.76  Aligned_cols=195  Identities=13%  Similarity=0.147  Sum_probs=109.9

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++.+........      ....+.......+.
T Consensus        11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~   84 (585)
T PRK14950         11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIA   84 (585)
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHh
Confidence            345567788999999999999887754 45689999999999999999987743211000      00001112222222


Q ss_pred             HHhCCCC------CCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCc-hHHH
Q 044393          227 KWLGWEL------KEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRL-QQVC  292 (513)
Q Consensus       227 ~~l~~~~------~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~-~~v~  292 (513)
                      ...+...      .....++....+.... .-..+++-++|+|++....  ....+    ..+.+...+|++|.+ ..+.
T Consensus        85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll  164 (585)
T PRK14950         85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP  164 (585)
T ss_pred             cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence            2111100      0111222222221110 1112467799999986442  22222    222335666666644 3332


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      ..+ .....+.+.+++.++....+.+.+......- ..+.+..|++.++|.+..+...
T Consensus       165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~  221 (585)
T PRK14950        165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENL  221 (585)
T ss_pred             HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence            222 2225788999999999888887765332222 2567889999999998654433

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.28  E-value=1.4e-06  Score=80.09  Aligned_cols=39  Identities=31%  Similarity=0.482  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  .+++|+||+|.|||||++.+.+-.+.
T Consensus        18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p   56 (254)
T COG1121          18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKP   56 (254)
T ss_pred             eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            4667776667777  89999999999999999999996654

>PRK05642 DNA replication initiation factor; Validated

Probab=98.25  E-value=2.2e-05  Score=73.11  Aligned_cols=146  Identities=16%  Similarity=0.120  Sum_probs=87.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|+.|+|||.|++.+++....+  -..++|++..+      +...             ..    .+.+  .+.. 
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-------------~~----~~~~--~~~~-   97 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-------------GP----ELLD--NLEQ-   97 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-------------hH----HHHH--hhhh-
Confidence            678999999999999999998876543  23355554321      1111             01    1111  1211 


Q ss_pred             CeEEEEEecCCCc---ccccc-cc-----cCCCCcEEEEEeCchH---------HHhhcCCcceeecCCCChHhHHHHHH
Q 044393          255 RKILIILDDVWKE---LDLET-VG-----IPANCCKILLTTRLQQ---------VCDRMGCDTRIKLDALDQAEGLDLLR  316 (513)
Q Consensus       255 ~~~LlVLDd~~~~---~~~~~-l~-----~~~~~~~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~  316 (513)
                      - -+|++||+...   ..+.. +.     ....|..+|+||+...         +...+.....+++++++.++-..+++
T Consensus        98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~  176 (234)
T PRK05642         98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ  176 (234)
T ss_pred             C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence            1 27889999533   22222 11     1122778888887532         22233334678999999999999998


Q ss_pred             HhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          317 EHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +++.... -.-.+++..-|++.+.|..-.+..+-
T Consensus       177 ~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l  209 (234)
T PRK05642        177 LRASRRG-LHLTDEVGHFILTRGTRSMSALFDLL  209 (234)
T ss_pred             HHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence            6554221 12225777888888887665554433

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.24  E-value=1e-05  Score=80.79  Aligned_cols=168  Identities=21%  Similarity=0.215  Sum_probs=96.3

Q ss_pred             cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +....|.+..++.|...+..             ...+-+.++|++|+|||+||+.+++.....  |     +.+..    
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~----  189 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG----  189 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch----
Confidence            34466888888888776531             113569999999999999999999977543  2     22111    


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD----------------LETVG------I  275 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~  275 (513)
                      ..+....   ++     .    ....++.++ ......+.+|+|||++....                +..+.      .
T Consensus       190 ~~l~~~~---~g-----~----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~  257 (364)
T TIGR01242       190 SELVRKY---IG-----E----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD  257 (364)
T ss_pred             HHHHHHh---hh-----H----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence            1111110   00     0    111122222 22234678999999865310                11111      1


Q ss_pred             CCCCcEEEEEeCchHH-----HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          276 PANCCKILLTTRLQQV-----CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       276 ~~~~~~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ..++..||.||.....     .........+.+...+.++..++|..+.........  -....+++.+.|..-
T Consensus       258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~--~~~~~la~~t~g~sg  329 (364)
T TIGR01242       258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED--VDLEAIAKMTEGASG  329 (364)
T ss_pred             CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc--CCHHHHHHHcCCCCH
Confidence            1226778888885432     111122457899999999999999987753222221  124678888887653

Many proteins may score above the trusted cutoff because an internal

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.24  E-value=7.1e-05  Score=77.08  Aligned_cols=193  Identities=16%  Similarity=0.150  Sum_probs=109.1

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      |..+...+|.+...+.|...+..+... ...++|+.|+||||+|+.+++..-.....+.       .....-.....+..
T Consensus        10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~   82 (535)
T PRK08451         10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALE   82 (535)
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhh
Confidence            456677889999999999999888654 5689999999999999999887632111000       00000000000000


Q ss_pred             HhCC------CCCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-HHHh
Q 044393          228 WLGW------ELKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-QVCD  293 (513)
Q Consensus       228 ~l~~------~~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~v~~  293 (513)
                      ....      .......++..+.+...... ..+++-++|+|++.....      +..+..+.+.+++|++|.+. .+..
T Consensus        83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~  162 (535)
T PRK08451         83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA  162 (535)
T ss_pred             cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence            0000      00000112222222210001 114667999999865432      22223343467777777653 2221


Q ss_pred             hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      .+ .....+++.+++.++....+.+.+......- .++.+..|++.++|.+.-+..+
T Consensus       163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl  218 (535)
T PRK08451        163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL  218 (535)
T ss_pred             HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence            11 1236899999999999999887665332222 2577889999999998544433

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.24  E-value=5.3e-05  Score=77.38  Aligned_cols=182  Identities=19%  Similarity=0.238  Sum_probs=105.5

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC----Ce--------------EEE
Q 044393          149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DE--------------VGI  209 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~--------------~~w  209 (513)
                      |..+..++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++..-....-    .|              .-|
T Consensus        13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~   92 (451)
T PRK06305         13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV   92 (451)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence            45566778999999999999988765 568899999999999999998876432100    00              001


Q ss_pred             EEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEE
Q 044393          210 ATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKI  282 (513)
Q Consensus       210 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~i  282 (513)
                      +.+....                  ....++.......+. .-..+++-++|+|++.....      +..+..+.+...+
T Consensus        93 ~~i~g~~------------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~  154 (451)
T PRK06305         93 LEIDGAS------------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF  154 (451)
T ss_pred             EEeeccc------------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence            1111100                  001111111111100 11124677899999854421      1222233336666


Q ss_pred             EEEeCc-hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          283 LLTTRL-QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       283 ivTtr~-~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                      |++|.. ..+...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+- ++..+
T Consensus       155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~L  223 (451)
T PRK06305        155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLY  223 (451)
T ss_pred             EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            666643 2222221 123578999999999988888765432211 225678889999999775 43333

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.23  E-value=1.8e-06  Score=82.98  Aligned_cols=138  Identities=26%  Similarity=0.364  Sum_probs=78.4

Q ss_pred             ccc-hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCe----------EEEEEEcCCCC--
Q 044393          155 FET-TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDE----------VGIATVSQDPD--  217 (513)
Q Consensus       155 ~~g-r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~----------~~wv~~~~~~~--  217 (513)
                      .+| ....++.+...+.++  .++++.|++|+|||||.+.+.+..+...    .+..          .-..++.+.+.  
T Consensus        13 ~~~~~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~   90 (293)
T COG1131          13 KYGGDKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY   90 (293)
T ss_pred             EeCCCCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence            344 355666666666677  8999999999999999999999886531    0000          01233333332  


Q ss_pred             ----hHH------------------HHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHhccCCeEEEEEecCCCcccc
Q 044393          218 ----IIN------------------VQSELVKWLGWELKEKD-----EEERADRLRLMFSESKGRKILIILDDVWKELDL  270 (513)
Q Consensus       218 ----~~~------------------~~~~i~~~l~~~~~~~~-----~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~  270 (513)
                          ..+                  ....+++.++.......     ......++.-...+.. ++-|++||++.+..|.
T Consensus        91 ~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~-~P~lliLDEPt~GLDp  169 (293)
T COG1131          91 PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH-DPELLILDEPTSGLDP  169 (293)
T ss_pred             ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc-CCCEEEECCCCcCCCH
Confidence                122                  22234444444321000     0112222222224554 7779999999998874


Q ss_pred             cccc-------c-CCCC-cEEEEEeCchHHHhhc
Q 044393          271 ETVG-------I-PANC-CKILLTTRLQQVCDRM  295 (513)
Q Consensus       271 ~~l~-------~-~~~~-~~iivTtr~~~v~~~~  295 (513)
                      ....       . ...| ..|++|||....+..+
T Consensus       170 ~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~  203 (293)
T COG1131         170 ESRREIWELLRELAKEGGVTILLSTHILEEAEEL  203 (293)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence            3321       1 1114 7999999997766655

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.22  E-value=3.6e-05  Score=81.46  Aligned_cols=189  Identities=15%  Similarity=0.168  Sum_probs=104.9

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEE-EEEcCCCChHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGI-ATVSQDPDIINV  221 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~w-v~~~~~~~~~~~  221 (513)
                      .|..+...+|.+.....|..++..++. +.+.++||.|+||||+|+.++..+-.....    .|..- .+....++... 
T Consensus        13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie-   91 (725)
T PRK07133         13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE-   91 (725)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence            345566778999999999999988764 456899999999999999998876432110    00000 00000000000 


Q ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCcc--cccc----cccCCCCcEEEEEe-CchHHHh
Q 044393          222 QSELVKWLGWELKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKEL--DLET----VGIPANCCKILLTT-RLQQVCD  293 (513)
Q Consensus       222 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~--~~~~----l~~~~~~~~iivTt-r~~~v~~  293 (513)
                             + ........++....+...-.. ..+++-++|+|++....  ....    +..|.+...+|++| ....+..
T Consensus        92 -------i-daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~  163 (725)
T PRK07133         92 -------M-DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL  163 (725)
T ss_pred             -------E-eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence                   0 000001122222222211111 12467799999985442  2222    22333355555444 4444433


Q ss_pred             hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      .+ .....+++.+++.++....+...+....... ..+.+..|++.++|.+--+
T Consensus       164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~A  216 (725)
T PRK07133        164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDA  216 (725)
T ss_pred             HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence            32 2236899999999999988887654222122 2456788999999977533

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.22  E-value=2.6e-05  Score=71.73  Aligned_cols=178  Identities=18%  Similarity=0.215  Sum_probs=106.3

Q ss_pred             cCCccccccccchhHHHHHHHHHHh-----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH
Q 044393          146 MHIPRFFSSFETTKSACNQITEALK-----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN  220 (513)
Q Consensus       146 ~~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~  220 (513)
                      ...|..+..|+|.++..++|.-.+.     +..+.-+.++||+|.||||||..+++.....  +.    +  .+.+-+. 
T Consensus        19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~--tsGp~le-   89 (332)
T COG2255          19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----I--TSGPALE-   89 (332)
T ss_pred             ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----e--ccccccc-
Confidence            3457788899999998888876663     2346789999999999999999999998765  11    1  1111100 


Q ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccc---------------cccC
Q 044393          221 VQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLET---------------VGIP  276 (513)
Q Consensus       221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~---------------l~~~  276 (513)
                                      ...++...+    .... +.=+|.+|++....         ..+.               +...
T Consensus        90 ----------------K~gDlaaiL----t~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ld  148 (332)
T COG2255          90 ----------------KPGDLAAIL----TNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLD  148 (332)
T ss_pred             ----------------ChhhHHHHH----hcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEecc
Confidence                            011111111    1222 34466667663321         0111               1111


Q ss_pred             CCCcE-EEEEeCchHHHhhcCC--cceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          277 ANCCK-ILLTTRLQQVCDRMGC--DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       277 ~~~~~-iivTtr~~~v~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      .+..+ |=.|||.-.+...+..  .-..+++-.+.+|-.++..+.+..-.. .-.++.+.+|+++..|-|--..-+.+..
T Consensus       149 LppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRV  227 (332)
T COG2255         149 LPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRRV  227 (332)
T ss_pred             CCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence            12223 3368886443332211  246788889999999999887752211 1125678999999999998666555544


Q ss_pred             c
Q 044393          354 T  354 (513)
Q Consensus       354 ~  354 (513)
                      +
T Consensus       228 R  228 (332)
T COG2255         228 R  228 (332)
T ss_pred             H
Confidence            3

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.22  E-value=1.1e-06  Score=78.98  Aligned_cols=38  Identities=29%  Similarity=0.578  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..|  .+++|+|++|+|||||++.++...+.
T Consensus        22 ~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p   59 (252)
T COG1124          22 ALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEKP   59 (252)
T ss_pred             hhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence            455555555566  89999999999999999999887654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.21  E-value=5.3e-06  Score=73.30  Aligned_cols=108  Identities=20%  Similarity=0.199  Sum_probs=63.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE-EERADRLRLMFS  250 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~~~~~  250 (513)
                      .+++|+|++|+|||||++.+........   .++..-..++.+...                  .+. ....-.+..  .
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar--a   85 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA--A   85 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH--H
Confidence            8999999999999999999998765431   112111122333221                  111 111222222  4


Q ss_pred             hccCCeEEEEEecCCCccccccc------ccC--CC-CcEEEEEeCchHHHhhcCCcceeecC
Q 044393          251 ESKGRKILIILDDVWKELDLETV------GIP--AN-CCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       251 l~~~~~~LlVLDd~~~~~~~~~l------~~~--~~-~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                      +.. ++-+++||++.+..|....      ...  .. +..||++||+......+. .+.+.+.
T Consensus        86 l~~-~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~-d~i~~l~  146 (177)
T cd03222          86 LLR-NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS-DRIHVFE  146 (177)
T ss_pred             Hhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC-CEEEEEc
Confidence            444 7789999999888764331      111  12 478999999987665442 2444444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.21  E-value=7.3e-06  Score=72.05  Aligned_cols=131  Identities=15%  Similarity=0.142  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe-EEEEEEcCCCChHHHHHHHHHHhCC-CCCCCC
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE-VGIATVSQDPDIINVQSELVKWLGW-ELKEKD  237 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~  237 (513)
                      +.+...+.++  .+++|+|++|+|||||++.++........   ++. ....++.+......  ..+.+.+.. .....+
T Consensus        18 ~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~LS   93 (166)
T cd03223          18 KDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYPWDDVLS   93 (166)
T ss_pred             ecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHHHhhccCCCCCC
Confidence            3333334455  89999999999999999999988654311   111 11234444433221  122222221 112222


Q ss_pred             H-HHHHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393          238 E-EERADRLRLMFSESKGRKILIILDDVWKELDLETVG------IPANCCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       238 ~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      . +...-.+..  .+.. ++-+++||++.+..|.....      ... +..||++||+..... . +.+.+.+
T Consensus        94 ~G~~~rv~lar--al~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh~~~~~~-~-~d~i~~l  160 (166)
T cd03223          94 GGEQQRLAFAR--LLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGHRPSLWK-F-HDRVLDL  160 (166)
T ss_pred             HHHHHHHHHHH--HHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeCChhHHh-h-CCEEEEE
Confidence            2 222222222  4444 77899999999887743321      111 578999999976543 2 3445544

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.19  E-value=8.4e-06  Score=71.98  Aligned_cols=122  Identities=16%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             HHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh---cC---CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC--C---
Q 044393          167 EALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ---EK---IFDEVGIATVSQDPDIINVQSELVKWLGWELK--E---  235 (513)
Q Consensus       167 ~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~---~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~---  235 (513)
                      ..+..+  .+++|+|++|+|||||.+.+......   ..   .|......++.+        .+.+..++....  .   
T Consensus        16 l~i~~G--~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~   85 (176)
T cd03238          16 VSIPLN--VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKL   85 (176)
T ss_pred             EEEcCC--CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCc
Confidence            334455  89999999999999999988642111   00   011111122222        345666654321  1   


Q ss_pred             --CCHH-HHHHHHHHHHHhccCC--eEEEEEecCCCccccccc------cc--CCCCcEEEEEeCchHHHhhcCCcceee
Q 044393          236 --KDEE-ERADRLRLMFSESKGR--KILIILDDVWKELDLETV------GI--PANCCKILLTTRLQQVCDRMGCDTRIK  302 (513)
Q Consensus       236 --~~~~-~~~~~l~~~~~l~~~~--~~LlVLDd~~~~~~~~~l------~~--~~~~~~iivTtr~~~v~~~~~~~~~~~  302 (513)
                        .+.. ...-.+..  .+.. +  +-+++||++.+..|....      ..  ...|..||++||+......  +...+.
T Consensus        86 ~~LSgGq~qrl~lar--al~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~  160 (176)
T cd03238          86 STLSGGELQRVKLAS--ELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIID  160 (176)
T ss_pred             CcCCHHHHHHHHHHH--HHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEE
Confidence              1111 11222222  4444 5  789999999888763321      11  1137899999999876542  445555


Q ss_pred             c
Q 044393          303 L  303 (513)
Q Consensus       303 l  303 (513)
                      +
T Consensus       161 l  161 (176)
T cd03238         161 F  161 (176)
T ss_pred             E
Confidence            5

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.19  E-value=6.1e-05  Score=79.67  Aligned_cols=176  Identities=14%  Similarity=0.188  Sum_probs=106.2

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCcc-EEEEEcCCCChHHHHHHHHHhHhhhc---------------------CCCCe
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTK-MVGLHGLGGVGKTTLAKFVGNQLRQE---------------------KIFDE  206 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~~~~~~~~~---------------------~~f~~  206 (513)
                      |..+..++|.+...+.|...+..+... .+.++|+.|+||||+|+.++......                     .+|+.
T Consensus        13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~   92 (614)
T PRK14971         13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI   92 (614)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence            455667789999999999999887654 57899999999999999988876421                     12221


Q ss_pred             EEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCC
Q 044393          207 VGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANC  279 (513)
Q Consensus       207 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~  279 (513)
                      . .+..+...                    ..++....+.... .-..+++-++|+|++.....  ...+    ..+.++
T Consensus        93 ~-~ld~~~~~--------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~  151 (614)
T PRK14971         93 H-ELDAASNN--------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY  151 (614)
T ss_pred             E-EecccccC--------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence            1 11111111                    1122222221100 11123566889999865432  2222    223335


Q ss_pred             cEEEEEe-CchHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          280 CKILLTT-RLQQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       280 ~~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      +.+|++| ....+...+ .....+++.+++.++....+.+.+....... ..+.+..|++.++|..--+
T Consensus       152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~a  219 (614)
T PRK14971        152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDA  219 (614)
T ss_pred             eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence            6665555 444443332 2236799999999999999987665332222 2466788999999977544

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.19  E-value=2.6e-05  Score=82.69  Aligned_cols=53  Identities=26%  Similarity=0.323  Sum_probs=43.0

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      |..+..++|+...+..+...+.......+.|+|++|+||||||+.+++.....
T Consensus       150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~  202 (615)
T TIGR02903       150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL  202 (615)
T ss_pred             cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            44556677888888888887766666789999999999999999998877543

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=9.3e-05  Score=78.31  Aligned_cols=196  Identities=13%  Similarity=0.115  Sum_probs=109.4

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+...+|.+.....|..++..+.. +.+.++|+.|+||||+|+.+++.+-....... .    ......-...+.+.
T Consensus        11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~   85 (620)
T PRK14948         11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIA   85 (620)
T ss_pred             CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHh
Confidence            345666778999999999999987753 67889999999999999999988754311100 0    00111111222222


Q ss_pred             HHhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEEEeCc-hHHH
Q 044393          227 KWLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANCCKILLTTRL-QQVC  292 (513)
Q Consensus       227 ~~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iivTtr~-~~v~  292 (513)
                      ......      ......+...+.+.... .-..+++-++|+|++.....  ...+    ..+.....+|++|.+ ..+.
T Consensus        86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll  165 (620)
T PRK14948         86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL  165 (620)
T ss_pred             cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence            111110      01112222222222110 11124667999999875422  2222    222235555555544 3333


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      ..+ .....+++.+++.++....+.+.+......- ..+.+..|++.++|.+..+..+
T Consensus       166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l  222 (620)
T PRK14948        166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL  222 (620)
T ss_pred             HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence            222 1226788889999998888877665322121 2466889999999988654433

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=8.7e-06  Score=72.60  Aligned_cols=47  Identities=26%  Similarity=0.290  Sum_probs=36.7

Q ss_pred             CeEEEEEecCCCcccccccccC--------CCCcEEEEEeCchHHHhhcCCccee
Q 044393          255 RKILIILDDVWKELDLETVGIP--------ANCCKILLTTRLQQVCDRMGCDTRI  301 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~~l~~~--------~~~~~iivTtr~~~v~~~~~~~~~~  301 (513)
                      ++-+.|||++++..|++.+...        .+++.++++||...+.+.+.....+
T Consensus       162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh  216 (251)
T COG0396         162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH  216 (251)
T ss_pred             CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence            5669999999999998776422        2388999999999999887655443

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=4.2e-06  Score=72.19  Aligned_cols=39  Identities=28%  Similarity=0.519  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+..|...+..+  ..+.|.|++|+|||||.+.++.-.++.
T Consensus        17 lf~~L~f~l~~G--e~~~i~G~NG~GKTtLLRilaGLl~p~   55 (209)
T COG4133          17 LFSDLSFTLNAG--EALQITGPNGAGKTTLLRILAGLLRPD   55 (209)
T ss_pred             eecceeEEEcCC--CEEEEECCCCCcHHHHHHHHHcccCCC
Confidence            445555556666  899999999999999999999988764

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.13  E-value=4.5e-05  Score=74.80  Aligned_cols=146  Identities=19%  Similarity=0.242  Sum_probs=84.0

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+...+|.+...+.+..++.++.. ..+.++|++|+||||+|+.+++.....     ...++.+. .. ....+..+
T Consensus        16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~-----~~~i~~~~-~~-~~~i~~~l   88 (316)
T PHA02544         16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE-----VLFVNGSD-CR-IDFVRNRL   88 (316)
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc-----ceEeccCc-cc-HHHHHHHH
Confidence            355667778999999999999987764 466669999999999999998876321     22333332 11 11111111


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--c----ccccc-cCCCCcEEEEEeCchH-HHhhc-CC
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--D----LETVG-IPANCCKILLTTRLQQ-VCDRM-GC  297 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~----~~~l~-~~~~~~~iivTtr~~~-v~~~~-~~  297 (513)
                      ..+               ... .... +.+-++|+||+....  +    +..+. ...+++.+|+||.... +...+ +.
T Consensus        89 ~~~---------------~~~-~~~~-~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR  151 (316)
T PHA02544         89 TRF---------------AST-VSLT-GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR  151 (316)
T ss_pred             HHH---------------HHh-hccc-CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence            111               000 0111 256689999996541  1    22211 2223778888887532 11111 11


Q ss_pred             cceeecCCCChHhHHHHHHH
Q 044393          298 DTRIKLDALDQAEGLDLLRE  317 (513)
Q Consensus       298 ~~~~~l~~L~~~e~~~lf~~  317 (513)
                      ...+.+...+.++..+++..
T Consensus       152 ~~~i~~~~p~~~~~~~il~~  171 (316)
T PHA02544        152 CRVIDFGVPTKEEQIEMMKQ  171 (316)
T ss_pred             ceEEEeCCCCHHHHHHHHHH
Confidence            24677777777777766554

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.13  E-value=0.00011  Score=78.51  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+..|  ..|+|+|.+|+|||||++.+.+-..+
T Consensus       487 ~vL~~isL~I~~G--e~vaIvG~SGsGKSTL~KLL~gly~p  525 (709)
T COG2274         487 PVLEDLSLEIPPG--EKVAIVGRSGSGKSTLLKLLLGLYKP  525 (709)
T ss_pred             chhhceeEEeCCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3666666666677  89999999999999999999887765

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.13  E-value=1.8e-05  Score=78.95  Aligned_cols=109  Identities=20%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCC
Q 044393          154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWEL  233 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~  233 (513)
                      ..+..+..++.+...+..+  ..|.++|++|+|||++|+.+++.......+..+.|+.+++..+..+.+....- .+...
T Consensus       176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vgy  252 (459)
T PRK11331        176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVGF  252 (459)
T ss_pred             cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCCe
Confidence            3456678888998888877  78889999999999999999998876667888899999988876665532210 00000


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          234 KEKDEEERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       234 ~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ... .......+... ....+++++||+|++...
T Consensus       253 ~~~-~G~f~~~~~~A-~~~p~~~~vliIDEINRa  284 (459)
T PRK11331        253 RRK-DGIFYNFCQQA-KEQPEKKYVFIIDEINRA  284 (459)
T ss_pred             Eec-CchHHHHHHHH-HhcccCCcEEEEehhhcc
Confidence            000 00111112210 122247899999998654

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.12  E-value=5.5e-05  Score=77.15  Aligned_cols=156  Identities=19%  Similarity=0.134  Sum_probs=93.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      ...+.|+|++|+|||+|++.+++.......-..+.|++.      .+....+...+...    ....    ...  ... 
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~~~----f~~--~~~-  192 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----KLNE----FRE--KYR-  192 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----cHHH----HHH--HHH-
Confidence            356999999999999999999998765421123455542      34455555544321    1111    111  121 


Q ss_pred             CCeEEEEEecCCCcccc----cccccC-----CCCcEEEEEeC-chHH--------HhhcCCcceeecCCCChHhHHHHH
Q 044393          254 GRKILIILDDVWKELDL----ETVGIP-----ANCCKILLTTR-LQQV--------CDRMGCDTRIKLDALDQAEGLDLL  315 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~~----~~l~~~-----~~~~~iivTtr-~~~v--------~~~~~~~~~~~l~~L~~~e~~~lf  315 (513)
                      .+.-+|++||+....+-    ..+...     ..+..||+||. .+.-        ...+.....+.+++.+.+.-..++
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL  272 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA  272 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence            14558999999754221    112111     12567888874 3321        122333457889999999999999


Q ss_pred             HHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          316 REHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      ++.+..... .-.+++...|++.+.|..-.+.
T Consensus       273 ~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~  303 (440)
T PRK14088        273 RKMLEIEHG-ELPEEVLNFVAENVDDNLRRLR  303 (440)
T ss_pred             HHHHHhcCC-CCCHHHHHHHHhccccCHHHHH
Confidence            988753221 2236788889998888655443

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=98.11  E-value=1.4e-05  Score=74.29  Aligned_cols=185  Identities=18%  Similarity=0.162  Sum_probs=110.7

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEE-EEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGI-ATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..+.|.+..+..|.+.+.....+....+||+|.|||+.|..++..+-....|.+.+- .++|...... +..+=.
T Consensus        31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Ki  109 (346)
T KOG0989|consen   31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKI  109 (346)
T ss_pred             CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhh
Confidence            35566677888999999999998877899999999999999999999988876556666542 3344332221 111000


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCe-EEEEEecCCCc--ccccccc---cCCC-CcEEEEEeCchH-HHhhcCC-
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRK-ILIILDDVWKE--LDLETVG---IPAN-CCKILLTTRLQQ-VCDRMGC-  297 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~-~LlVLDd~~~~--~~~~~l~---~~~~-~~~iivTtr~~~-v~~~~~~-  297 (513)
                      ..+         .......... .-...++ -++|||++...  +.|..+.   .... ..+.|+++.+-. +...+.. 
T Consensus       110 k~f---------akl~~~~~~~-~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR  179 (346)
T KOG0989|consen  110 KNF---------AKLTVLLKRS-DGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR  179 (346)
T ss_pred             cCH---------HHHhhccccc-cCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence            000         0000000000 0001122 48999998765  3454443   2222 566666665532 2222211 


Q ss_pred             cceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          298 DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      -..+..++|..+....-++..+..+...-+ .+..+.|++.++|.--
T Consensus       180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR  225 (346)
T KOG0989|consen  180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLR  225 (346)
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHH
Confidence            145888999999988888887764433333 5677889999988543

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.11  E-value=5.3e-05  Score=76.11  Aligned_cols=167  Identities=21%  Similarity=0.197  Sum_probs=94.1

Q ss_pred             ccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393          153 SSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII  219 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~  219 (513)
                      ..+.|.+..++.|...+..             ..++-|.++|++|+|||++|+.+++.....       |+.++.    .
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~----~  199 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG----S  199 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----H
Confidence            3456888888887776521             124569999999999999999999876532       222211    1


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------c------ccccc---c---CC
Q 044393          220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------D------LETVG---I---PA  277 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~------~~~l~---~---~~  277 (513)
                      .    +....    .+... .....+..  ......+.+|+|||+....          +      +..+.   .   ..
T Consensus       200 ~----l~~~~----~g~~~-~~i~~~f~--~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~  268 (389)
T PRK03992        200 E----LVQKF----IGEGA-RLVRELFE--LAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR  268 (389)
T ss_pred             H----HhHhh----ccchH-HHHHHHHH--HHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence            1    11111    01111 11111111  2223467899999986431          0      11111   0   11


Q ss_pred             CCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          278 NCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       278 ~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      ++..||.||......+. +    .....+.+.+.+.++-.++|+.+.........  -....+++.+.|.-
T Consensus       269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~s  337 (389)
T PRK03992        269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGAS  337 (389)
T ss_pred             CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCC
Confidence            25678878876432221 1    12357999999999999999987753222211  12466777777764

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.09  E-value=6.6e-05  Score=79.15  Aligned_cols=194  Identities=18%  Similarity=0.185  Sum_probs=106.8

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+.....|...+..+.. +.+.++|+.|+||||+|+.+++.+-.......       .....-.....|.
T Consensus        11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~   83 (576)
T PRK14965         11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT   83 (576)
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence            345677788999999999999988765 45689999999999999999887643211100       0000000011110


Q ss_pred             HHhCC-----C-CCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeC-chHHH
Q 044393          227 KWLGW-----E-LKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTR-LQQVC  292 (513)
Q Consensus       227 ~~l~~-----~-~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr-~~~v~  292 (513)
                      ..-..     . ......++....+...... ..+++-++|+|++.....      +..+..+.+...+|++|. ...+.
T Consensus        84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~  163 (576)
T PRK14965         84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP  163 (576)
T ss_pred             cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence            00000     0 0011112222211111011 123566899999865421      222223344666665554 34444


Q ss_pred             hhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          293 DRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       293 ~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                      ..+. ....+++.+++.++....+...+......- ..+.+..|++.++|..- ++..+
T Consensus       164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L  221 (576)
T PRK14965        164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL  221 (576)
T ss_pred             HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence            3322 225788999999998888877654322222 25667888999998764 44444

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.09  E-value=6.7e-06  Score=74.69  Aligned_cols=40  Identities=25%  Similarity=0.474  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...++.+.-.+.++  .+|+|+|++|||||||.+.++.-...
T Consensus        16 ~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          16 VEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             eEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34455555556666  89999999999999999999887654

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.08  E-value=3e-05  Score=73.61  Aligned_cols=129  Identities=12%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      ...+.++|++|+||||+|+.+++............++.++..    ++...        ..+.........+.    .. 
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~--------~~g~~~~~~~~~~~----~a-  104 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE--------YIGHTAQKTREVIK----KA-  104 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh--------hccchHHHHHHHHH----hc-
Confidence            356889999999999999999987643221111123333221    11110        01111112222222    11 


Q ss_pred             CCeEEEEEecCCCcc----------cccccccC---CC-CcEEEEEeCchHHH------hhc--CCcceeecCCCChHhH
Q 044393          254 GRKILIILDDVWKEL----------DLETVGIP---AN-CCKILLTTRLQQVC------DRM--GCDTRIKLDALDQAEG  311 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~----------~~~~l~~~---~~-~~~iivTtr~~~v~------~~~--~~~~~~~l~~L~~~e~  311 (513)
                       ...+|++||+....          .+..+...   .. ...+|+++......      ..+  .....+.+++++.++-
T Consensus       105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el  183 (261)
T TIGR02881       105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL  183 (261)
T ss_pred             -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence             23489999996421          12222211   11 33555555432220      011  1124688999999999


Q ss_pred             HHHHHHhcC
Q 044393          312 LDLLREHAG  320 (513)
Q Consensus       312 ~~lf~~~~~  320 (513)
                      .+++.+.+.
T Consensus       184 ~~Il~~~~~  192 (261)
T TIGR02881       184 MEIAERMVK  192 (261)
T ss_pred             HHHHHHHHH
Confidence            999988775

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.08  E-value=6e-05  Score=82.15  Aligned_cols=156  Identities=13%  Similarity=0.154  Sum_probs=91.0

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      +....+++||+.+++.+...|......-+.++|++|+|||++|+.+++.......    ....+|. ++    .    ..
T Consensus       178 ~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~----~~  248 (731)
T TIGR02639       178 NGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----M----GS  248 (731)
T ss_pred             cCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----H----HH
Confidence            4556678999999999999987776677889999999999999999998744311    1233332 11    1    11


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc----------cccccc-cCCC--CcEEEEEeCchH
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKEL----------DLETVG-IPAN--CCKILLTTRLQQ  290 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~----------~~~~l~-~~~~--~~~iivTtr~~~  290 (513)
                      ++..  ....+    +....+..++ .+...++.+|++|++....          +...+. +...  ..++|-+|...+
T Consensus       249 l~a~--~~~~g----~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e  322 (731)
T TIGR02639       249 LLAG--TKYRG----DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEE  322 (731)
T ss_pred             Hhhh--ccccc----hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHH
Confidence            1110  00111    1122222222 2323368899999985331          112222 1111  345565555422


Q ss_pred             HHhh-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393          291 VCDR-------MGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       291 v~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      ....       ......+.+++++.++..++++...
T Consensus       323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~  358 (731)
T TIGR02639       323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK  358 (731)
T ss_pred             HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence            2110       1123579999999999999998654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.07  E-value=2.1e-05  Score=70.15  Aligned_cols=123  Identities=22%  Similarity=0.222  Sum_probs=66.6

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe-----------EEEEEEcCCCChHHHHHHHHHHhCCCCC
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE-----------VGIATVSQDPDIINVQSELVKWLGWELK  234 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~-----------~~wv~~~~~~~~~~~~~~i~~~l~~~~~  234 (513)
                      +.++  .+++|+|++|+|||||++.++........   |+.           ....++.+.+....  ..+.+.+   ..
T Consensus        25 i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i---~~   97 (178)
T cd03247          25 LKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL---GR   97 (178)
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh---cc
Confidence            4455  89999999999999999999987654210   000           00112222221111  0111111   11


Q ss_pred             CCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc-------ccCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393          235 EKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV-------GIPANCCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       235 ~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l-------~~~~~~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      ..+. +...-.+..  .+.. ++-+++||++.+..|....       .....+..||++||+......  +.+.+.+
T Consensus        98 ~LS~G~~qrv~lar--al~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l  169 (178)
T cd03247          98 RFSGGERQRLALAR--ILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL  169 (178)
T ss_pred             cCCHHHHHHHHHHH--HHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence            1111 111222222  4444 7789999999988763321       111237889999999877652  3455444

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.07  E-value=1.7e-05  Score=68.52  Aligned_cols=41  Identities=32%  Similarity=0.469  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ...+..+...+..+  ..+.++|++|.|||||.+.+|...++.
T Consensus        15 ~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt   55 (223)
T COG2884          15 REALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPT   55 (223)
T ss_pred             chhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence            34666676667777  899999999999999999999988753

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.06  E-value=0.00021  Score=69.78  Aligned_cols=152  Identities=15%  Similarity=0.136  Sum_probs=89.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeEEEEEEcCCCChHHHHHHHHHHhCCCC
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEVGIATVSQDPDIINVQSELVKWLGWEL  233 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~  233 (513)
                      .+.+.+.|+.|+||||+|..++..+--..                    |.| ..++.-...                 .
T Consensus        22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~-----------------~   83 (328)
T PRK05707         22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA-----------------D   83 (328)
T ss_pred             ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC-----------------C
Confidence            35788999999999999999988875321                    111 112211000                 0


Q ss_pred             CCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HHhhcC-Ccceeec
Q 044393          234 KEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VCDRMG-CDTRIKL  303 (513)
Q Consensus       234 ~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~~~~~-~~~~~~l  303 (513)
                      .....++....... +..  ..+++-++|+|++.....      +..+..|.+++.+|+||++.. +...+. -...+.+
T Consensus        84 ~~i~id~iR~l~~~-~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~  162 (328)
T PRK05707         84 KTIKVDQVRELVSF-VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC  162 (328)
T ss_pred             CCCCHHHHHHHHHH-HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence            01122333332221 111  123455667899876532      333444555788888888753 333322 2367999


Q ss_pred             CCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          304 DALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       304 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      .+++.+++.+.+....+..     ..+.+..++..++|.|+....+
T Consensus       163 ~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l  203 (328)
T PRK05707        163 PLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL  203 (328)
T ss_pred             CCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence            9999999999998764211     1345667889999999865544

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.05  E-value=1.8e-05  Score=67.78  Aligned_cols=93  Identities=24%  Similarity=0.291  Sum_probs=58.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-------EEcCCCChHHHHHHHHHHhCCCCCCCCH-HHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-------TVSQDPDIINVQSELVKWLGWELKEKDE-EERADRLR  246 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-------~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~  246 (513)
                      .+++|+|++|+|||||++.+.+.....   ...+++       ++.+                     .+. ....-.+.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~~~i~~~~~---------------------lS~G~~~rv~la   82 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGSTVKIGYFEQ---------------------LSGGEKMRLALA   82 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCeEEEEEEcc---------------------CCHHHHHHHHHH
Confidence            899999999999999999999877542   222222       1222                     111 11122222


Q ss_pred             HHHHhccCCeEEEEEecCCCccccccc------ccCCCCcEEEEEeCchHHHhhc
Q 044393          247 LMFSESKGRKILIILDDVWKELDLETV------GIPANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       247 ~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~~iivTtr~~~v~~~~  295 (513)
                      .  .+.. ++-++++|++....|....      .... +..||++||+.......
T Consensus        83 r--al~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~~~~  133 (144)
T cd03221          83 K--LLLE-NPNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFLDQV  133 (144)
T ss_pred             H--HHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHh
Confidence            2  4444 7789999999887663322      1111 56899999987766543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.05  E-value=8.7e-05  Score=75.33  Aligned_cols=154  Identities=18%  Similarity=0.175  Sum_probs=91.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|+.|+|||+|++.+++.......-..+++++      ..+....+...+...    ....    +..  .+.  
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~----~~~~----~~~--~~~--  198 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN----KMEE----FKE--KYR--  198 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC----CHHH----HHH--HHH--
Confidence            5789999999999999999999886542112344543      223344444444321    1111    122  121  


Q ss_pred             CeEEEEEecCCCcccc----ccccc-----CCCCcEEEEEeCch-H--------HHhhcCCcceeecCCCChHhHHHHHH
Q 044393          255 RKILIILDDVWKELDL----ETVGI-----PANCCKILLTTRLQ-Q--------VCDRMGCDTRIKLDALDQAEGLDLLR  316 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~----~~l~~-----~~~~~~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~e~~~lf~  316 (513)
                      +.-+|+|||+.....-    +.+..     ...+..+|+||... .        +...+.....+.+.+.+.++-..++.
T Consensus       199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~  278 (405)
T TIGR00362       199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ  278 (405)
T ss_pred             hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence            2348999999653211    11111     11256788877642 1        22223333568999999999999999


Q ss_pred             HhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          317 EHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      +.+..... .-.+++...|++.+.|.+-.+.
T Consensus       279 ~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~  308 (405)
T TIGR00362       279 KKAEEEGL-ELPDEVLEFIAKNIRSNVRELE  308 (405)
T ss_pred             HHHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Confidence            88864322 2236778889999888776443

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.05  E-value=1.4e-05  Score=70.75  Aligned_cols=120  Identities=18%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCeE------------EEEEEcCCCChHHHHHHHHHHhCCCC
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDEV------------GIATVSQDPDIINVQSELVKWLGWEL  233 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~------------~wv~~~~~~~~~~~~~~i~~~l~~~~  233 (513)
                      +..+  .+++|+|++|+|||||++.++........   |+..            ...++.+.+....  .++.+.+    
T Consensus        25 i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~l----   96 (173)
T cd03246          25 IEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS--GSIAENI----   96 (173)
T ss_pred             ECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc--CcHHHHC----
Confidence            3445  89999999999999999999987654210   1100            0112222221111  0111111    


Q ss_pred             CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393          234 KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       234 ~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                        .+. +...-.+..  .+.. ++-+++||++.+..|....      . . ...|..||++||+..... . +.+.+.+
T Consensus        97 --LS~G~~qrv~la~--al~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l  168 (173)
T cd03246          97 --LSGGQRQRLGLAR--ALYG-NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL  168 (173)
T ss_pred             --cCHHHHHHHHHHH--HHhc-CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence              111 111222222  4444 7779999999988764321      1 1 112779999999987664 3 4455444

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.05  E-value=8e-06  Score=71.57  Aligned_cols=115  Identities=14%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC--CCChHHHHHHHHHHhCCCCCCCCHH-HHHHH
Q 044393          168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ--DPDIINVQSELVKWLGWELKEKDEE-ERADR  244 (513)
Q Consensus       168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~  244 (513)
                      .+.++  .+++|+|++|+|||||++.++......   ...+++.-..  ..+..+...   +.++.. .+.+.. ...-.
T Consensus        22 ~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~   92 (163)
T cd03216          22 SVRRG--EVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVE   92 (163)
T ss_pred             EEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHH
Confidence            34455  899999999999999999999876542   2333322111  111111111   111111 112221 22222


Q ss_pred             HHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchHHHhh
Q 044393          245 LRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQVCDR  294 (513)
Q Consensus       245 l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~v~~~  294 (513)
                      +..  .+.. ++-++++|++.+..|....      . . ...+..||++||+......
T Consensus        93 lar--al~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  147 (163)
T cd03216          93 IAR--ALAR-NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE  147 (163)
T ss_pred             HHH--HHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            222  4444 7789999999988773321      1 1 1227899999999775544

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.04  E-value=0.00018  Score=75.47  Aligned_cols=191  Identities=14%  Similarity=0.144  Sum_probs=105.8

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|.+...+.|..++..+.. +.+.++|+.|+||||+|+.++...-.....+.       .+.+.-.....+.
T Consensus        11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~   83 (559)
T PRK05563         11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAIT   83 (559)
T ss_pred             CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHh
Confidence            355677788999999999999987754 55778999999999999999877643211000       0000001111111


Q ss_pred             HHhCCC------CCCCCHHHHHHHHHHHHH-hccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEe-CchHHH
Q 044393          227 KWLGWE------LKEKDEEERADRLRLMFS-ESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTT-RLQQVC  292 (513)
Q Consensus       227 ~~l~~~------~~~~~~~~~~~~l~~~~~-l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTt-r~~~v~  292 (513)
                      ......      ......++.......... -..++.-++|+|++....  ....+    ..+.+...+|++| ....+.
T Consensus        84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~  163 (559)
T PRK05563         84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP  163 (559)
T ss_pred             cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence            100000      001112222222221111 123467799999986542  22222    2333354555444 433333


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ..+ .....+.+.+++.++....+...+.......+ .+.+..|++.++|.+.-+
T Consensus       164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~a  217 (559)
T PRK05563        164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDA  217 (559)
T ss_pred             HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence            222 22357889999999998888876643222222 566788899999887643

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.04  E-value=0.00013  Score=69.85  Aligned_cols=194  Identities=15%  Similarity=0.104  Sum_probs=118.6

Q ss_pred             cccchhHHHHHHHHHHhcCC---ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhC
Q 044393          154 SFETTKSACNQITEALKKGS---TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLG  230 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~  230 (513)
                      .+.+|+..+..+...+.+..   +..|.|.|.+|.|||.+.+++.+.....     .+|+++-+.++...++..|+...+
T Consensus         7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~~   81 (438)
T KOG2543|consen    7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKSQ   81 (438)
T ss_pred             CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHhc
Confidence            34579999999998886543   3456899999999999999999987332     569999999999999999999885


Q ss_pred             -CCCCCCCHHH----HHH---HHHHHHHhc-cCCeEEEEEecCCCcccccccccC----------CCCcEEEEEeCch--
Q 044393          231 -WELKEKDEEE----RAD---RLRLMFSES-KGRKILIILDDVWKELDLETVGIP----------ANCCKILLTTRLQ--  289 (513)
Q Consensus       231 -~~~~~~~~~~----~~~---~l~~~~~l~-~~~~~LlVLDd~~~~~~~~~l~~~----------~~~~~iivTtr~~--  289 (513)
                       .+.++.....    ..+   .+.++-... .++.++||||+++...|.+.+..+          .+...|+++...-  
T Consensus        82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~  161 (438)
T KOG2543|consen   82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK  161 (438)
T ss_pred             cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence             2222221111    111   122211121 246899999999877665554321          1234444443332  


Q ss_pred             HHHhhcCCc--ceeecCCCChHhHHHHHHHhcCCCCC----CCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          290 QVCDRMGCD--TRIKLDALDQAEGLDLLREHAGIDVA----DTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       290 ~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      .....+++.  .++....-+.+|...++.+.-.....    ..-+.=+..-....|+ -+-.+..++...
T Consensus       162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~  230 (438)
T KOG2543|consen  162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA  230 (438)
T ss_pred             HhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence            222223433  45667888999998888764421111    0112223455556777 555555555443

>PRK06620 hypothetical protein; Validated

Probab=98.04  E-value=4.4e-05  Score=69.88  Aligned_cols=130  Identities=18%  Similarity=0.039  Sum_probs=79.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      +.+.|+|++|+|||+|++.+++....       .++  +..+.                   . .       .  .. . 
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~--~~~~~-------------------~-~-------~--~~-~-   84 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YII--KDIFF-------------------N-E-------E--IL-E-   84 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC-------EEc--chhhh-------------------c-h-------h--HH-h-
Confidence            56999999999999999987765431       111  10000                   0 0       0  11 1 


Q ss_pred             CeEEEEEecCCCcccccccccC-----CCCcEEEEEeCchH-------HHhhcCCcceeecCCCChHhHHHHHHHhcCCC
Q 044393          255 RKILIILDDVWKELDLETVGIP-----ANCCKILLTTRLQQ-------VCDRMGCDTRIKLDALDQAEGLDLLREHAGID  322 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~~l~~~-----~~~~~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~  322 (513)
                      ..-+|++||+....+ ..+...     ..|..+|+|++...       +...+.....+++++++.++-..++++.+...
T Consensus        85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~  163 (214)
T PRK06620         85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS  163 (214)
T ss_pred             cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence            335788999974322 112111     23778899888532       23334444589999999999888888876532


Q ss_pred             CCCCchHHHHHHHHHHhCCCchHH
Q 044393          323 VADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       323 ~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      . -.-.+++..-|++.+.|.--.+
T Consensus       164 ~-l~l~~ev~~~L~~~~~~d~r~l  186 (214)
T PRK06620        164 S-VTISRQIIDFLLVNLPREYSKI  186 (214)
T ss_pred             C-CCCCHHHHHHHHHHccCCHHHH
Confidence            1 1122677788888887755443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.02  E-value=2.8e-05  Score=68.60  Aligned_cols=47  Identities=28%  Similarity=0.359  Sum_probs=38.2

Q ss_pred             cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.-++|..+.++.+.-.+..+  .+.+++||+|+|||||.+.+.+-.
T Consensus        11 ~~l~~yYg~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          11 RDLNLYYGDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             cceeEEECchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhc
Confidence            34556778888888887777777  899999999999999999886543

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.02  E-value=7.7e-05  Score=76.73  Aligned_cols=154  Identities=16%  Similarity=0.148  Sum_probs=92.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|++|+|||+|++.+++.......-..+.+++..      .....+...+...    ...    .+..  .+.  
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~----~~~----~~~~--~~~--  210 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN----TME----EFKE--KYR--  210 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC----cHH----HHHH--HHh--
Confidence            568999999999999999999998754222234454322      2333444433211    111    1122  221  


Q ss_pred             CeEEEEEecCCCccc----cccccc-----CCCCcEEEEEeCchH---------HHhhcCCcceeecCCCChHhHHHHHH
Q 044393          255 RKILIILDDVWKELD----LETVGI-----PANCCKILLTTRLQQ---------VCDRMGCDTRIKLDALDQAEGLDLLR  316 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~----~~~l~~-----~~~~~~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~  316 (513)
                      +.-+|+|||+.....    .+.+..     ...+..+|+||....         +...+.....+++.+.+.++-..+++
T Consensus       211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~  290 (450)
T PRK00149        211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK  290 (450)
T ss_pred             cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence            344899999964321    111111     112566888876531         22334444679999999999999999


Q ss_pred             HhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          317 EHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      +.+.... ..-.+++..-|++.+.|..-.+.
T Consensus       291 ~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~  320 (450)
T PRK00149        291 KKAEEEG-IDLPDEVLEFIAKNITSNVRELE  320 (450)
T ss_pred             HHHHHcC-CCCCHHHHHHHHcCcCCCHHHHH
Confidence            8875322 22236788899999998876443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.02  E-value=9.9e-06  Score=70.63  Aligned_cols=40  Identities=30%  Similarity=0.535  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      +.++++......+  .+++|.|++|.||||+.+.++.-+.+.
T Consensus        16 ~AvrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~P~   55 (245)
T COG4555          16 QAVRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLIPD   55 (245)
T ss_pred             hhhhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhccCC
Confidence            3455555555566  999999999999999999999988764

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.02  E-value=0.00014  Score=76.02  Aligned_cols=192  Identities=14%  Similarity=0.122  Sum_probs=108.0

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+...+|.+..+..|..++.++.. +.+.++|+.|+||||+|+.+++.+-.......   ..+....+    ...+.
T Consensus        11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~   83 (563)
T PRK06647         11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSID   83 (563)
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHH
Confidence            355667788999999999999988764 45889999999999999999988753211100   00000000    01110


Q ss_pred             HHhCC-----C-CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cc----ccccCCCCcEEEEEeCc-hHHH
Q 044393          227 KWLGW-----E-LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LE----TVGIPANCCKILLTTRL-QQVC  292 (513)
Q Consensus       227 ~~l~~-----~-~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~----~l~~~~~~~~iivTtr~-~~v~  292 (513)
                      ..-..     . ......++......... .-..+++-++|+|++.....  ..    .+..+.+...+|++|.. ..+.
T Consensus        84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~  163 (563)
T PRK06647         84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP  163 (563)
T ss_pred             cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence            00000     0 00111222222221111 11134667899999865432  22    22233346666666544 3333


Q ss_pred             hhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          293 DRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       293 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      ..+ .....+++.+++.++....+.+.+...... -.++.+..|++.++|.+..+.
T Consensus       164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~al  218 (563)
T PRK06647        164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAY  218 (563)
T ss_pred             HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence            222 222568999999999988888776432212 225677889999999885443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.02  E-value=2.2e-05  Score=71.11  Aligned_cols=134  Identities=21%  Similarity=0.278  Sum_probs=74.6

Q ss_pred             HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CCCeEEEEEEcCCCCh------
Q 044393          164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IFDEVGIATVSQDPDI------  218 (513)
Q Consensus       164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~------  218 (513)
                      .+.-.+..+  .+++|+||+|+|||||...+..-.++..                   .|...-...+.|.+++      
T Consensus        23 ~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv  100 (226)
T COG1136          23 DVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTV  100 (226)
T ss_pred             cceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCH
Confidence            333334455  8999999999999999999976654421                   0111112233333321      


Q ss_pred             ------------------HHHHHHHHHHhCCCCC-------CCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCcccccc
Q 044393          219 ------------------INVQSELVKWLGWELK-------EKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLET  272 (513)
Q Consensus       219 ------------------~~~~~~i~~~l~~~~~-------~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~  272 (513)
                                        ......+++.++....       +.+- ++....+..  .+.. .+-+|+.|+++..+|...
T Consensus       101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR--AL~~-~P~iilADEPTgnLD~~t  177 (226)
T COG1136         101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR--ALIN-NPKIILADEPTGNLDSKT  177 (226)
T ss_pred             HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH--HHhc-CCCeEEeeCccccCChHH
Confidence                              1122333444444311       1111 222222222  4444 788999999988766322


Q ss_pred             -------cccC--CCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393          273 -------VGIP--ANCCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       273 -------l~~~--~~~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                             +...  ..|..||++||++.++..+  .+.+.+.
T Consensus       178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~  216 (226)
T COG1136         178 AKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK  216 (226)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence                   1111  1278999999999998854  3555553

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.02  E-value=0.00011  Score=81.06  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=90.0

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHHHH
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      ...+.+||+.+++.+...|.....+-+.++|++|+|||++|..++........    -+..+|. +    +..    .++
T Consensus       177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~----~l~  247 (821)
T CHL00095        177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIG----LLL  247 (821)
T ss_pred             CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHH----HHh
Confidence            34567899999999999997766567789999999999999999988753211    1233342 1    111    111


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccCC---CCcEEEEEeCchHHHhh
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIPA---NCCKILLTTRLQQVCDR  294 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~~---~~~~iivTtr~~~v~~~  294 (513)
                      .  +....+.-.......+.   .+...++.+|++|++....         +...+..+.   +..++|.+|..++....
T Consensus       248 a--g~~~~ge~e~rl~~i~~---~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~  322 (821)
T CHL00095        248 A--GTKYRGEFEERLKRIFD---EIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH  322 (821)
T ss_pred             c--cCCCccHHHHHHHHHHH---HHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence            1  11112211122222222   2233478999999984321         122222111   24567776665543211


Q ss_pred             -------cCCcceeecCCCChHhHHHHHHHh
Q 044393          295 -------MGCDTRIKLDALDQAEGLDLLREH  318 (513)
Q Consensus       295 -------~~~~~~~~l~~L~~~e~~~lf~~~  318 (513)
                             ......+.+...+.++...++...
T Consensus       323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l  353 (821)
T CHL00095        323 IEKDPALERRFQPVYVGEPSVEETIEILFGL  353 (821)
T ss_pred             HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence                   122356888889999988887643

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.02  E-value=4.9e-06  Score=77.32  Aligned_cols=50  Identities=26%  Similarity=0.416  Sum_probs=35.2

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc---CCCCeEEEEEEcC
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE---KIFDEVGIATVSQ  214 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~  214 (513)
                      +++.-.+.++  ..+++.|++|+|||||.+.++.-..+.   -.|+...|..+++
T Consensus        19 ~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~   71 (345)
T COG1118          19 DDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN   71 (345)
T ss_pred             ccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc
Confidence            3444445566  899999999999999999999887653   2344444544443

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.00  E-value=2.1e-05  Score=69.65  Aligned_cols=114  Identities=25%  Similarity=0.345  Sum_probs=64.3

Q ss_pred             HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-----------------EEcCCCChH---HHHHH
Q 044393          165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-----------------TVSQDPDII---NVQSE  224 (513)
Q Consensus       165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-----------------~~~~~~~~~---~~~~~  224 (513)
                      +...+.++  .+++|+|++|+|||||++.++......   ...+++                 ++.+.....   .+...
T Consensus        19 ~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   93 (173)
T cd03230          19 ISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN   93 (173)
T ss_pred             eEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH
Confidence            33334455  899999999999999999999876432   111111                 222221110   11111


Q ss_pred             HHHHhCCCCCCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c--cCCCCcEEEEEeCchHHHhhc
Q 044393          225 LVKWLGWELKEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------G--IPANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       225 i~~~l~~~~~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~--~~~~~~~iivTtr~~~v~~~~  295 (513)
                      +.         .+. +...-.+..  .+.. ++-++++|++....|....      .  ....|..||++||+......+
T Consensus        94 ~~---------LS~G~~qrv~lar--al~~-~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~  161 (173)
T cd03230          94 LK---------LSGGMKQRLALAQ--ALLH-DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL  161 (173)
T ss_pred             hh---------cCHHHHHHHHHHH--HHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence            11         111 111222222  4444 7889999999988774332      1  111268899999998766543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=8.2e-06  Score=87.45  Aligned_cols=40  Identities=30%  Similarity=0.536  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        14 ~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~p   53 (638)
T PRK10636         14 RVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISA   53 (638)
T ss_pred             ceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            33455555555666  89999999999999999999997654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.00  E-value=2.4e-05  Score=69.14  Aligned_cols=124  Identities=20%  Similarity=0.219  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE------------------EEcCCCChHHHHH
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA------------------TVSQDPDIINVQS  223 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv------------------~~~~~~~~~~~~~  223 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++.....   ...+++                  ++.+.+....  .
T Consensus        18 l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~--~   90 (171)
T cd03228          18 LKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS--G   90 (171)
T ss_pred             ccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--c
Confidence            33333334455  899999999999999999999886542   111111                  1111111110  0


Q ss_pred             HHHHHhCCCCCCCCHH-HHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-cCCCCcEEEEEeCchHHHhhc
Q 044393          224 ELVKWLGWELKEKDEE-ERADRLRLMFSESKGRKILIILDDVWKELDLETV------G-IPANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~~-~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~~~~~~~iivTtr~~~v~~~~  295 (513)
                      ++.+.+      .+.. ...-.+..  .+.. ++-+++||++.+..|....      . ....+..||++||+...... 
T Consensus        91 t~~e~l------LS~G~~~rl~la~--al~~-~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-  160 (171)
T cd03228          91 TIRENI------LSGGQRQRIAIAR--ALLR-DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-  160 (171)
T ss_pred             hHHHHh------hCHHHHHHHHHHH--HHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence            111111      1111 11112222  4444 7789999999988763321      1 11126789999999877654 


Q ss_pred             CCcceeec
Q 044393          296 GCDTRIKL  303 (513)
Q Consensus       296 ~~~~~~~l  303 (513)
                       +.+.+.+
T Consensus       161 -~d~~~~l  167 (171)
T cd03228         161 -ADRIIVL  167 (171)
T ss_pred             -CCEEEEE
Confidence             4455544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=2.6e-05  Score=77.92  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=36.6

Q ss_pred             ccchh-HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          155 FETTK-SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       155 ~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      |.+.+ ..++.+...+.+|  ..|+|+|.+|+|||||++.+.+.+..+
T Consensus       346 y~~~~~~~L~~~~l~l~~G--EkvAIlG~SGsGKSTllqLl~~~~~~~  391 (573)
T COG4987         346 YPGQQTKALKNFNLTLAQG--EKVAILGRSGSGKSTLLQLLAGAWDPQ  391 (573)
T ss_pred             cCCCccchhhccceeecCC--CeEEEECCCCCCHHHHHHHHHhccCCC
Confidence            44444 5777777778888  899999999999999999999876553

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=98.00  E-value=0.0011  Score=65.48  Aligned_cols=192  Identities=14%  Similarity=0.164  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCCeEEEEEEcCC---CChHHHHHHHHHHhCC--
Q 044393          158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFDEVGIATVSQD---PDIINVQSELVKWLGW--  231 (513)
Q Consensus       158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~--  231 (513)
                      |.+..++|..||....-.+|.|.||-|+||+.|+ .++..+.+.      +..+.+.+-   .+-...+..++.++|.  
T Consensus         1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P   74 (431)
T PF10443_consen    1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP   74 (431)
T ss_pred             CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence            4567889999998776689999999999999999 666665433      334443321   1222344444444332  


Q ss_pred             ---------------------CCCC--CC-HHHHHHH-------HHHHHHhc--------------------cCCeEEEE
Q 044393          232 ---------------------ELKE--KD-EEERADR-------LRLMFSES--------------------KGRKILII  260 (513)
Q Consensus       232 ---------------------~~~~--~~-~~~~~~~-------l~~~~~l~--------------------~~~~~LlV  260 (513)
                                           ...+  .+ +.+....       |+.+ .+.                    ..++=++|
T Consensus        75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~i-al~~~~~~~~~~~l~e~~yl~~hPe~~PVVV  153 (431)
T PF10443_consen   75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDI-ALSNRKKDDKDANLKEEDYLEAHPERRPVVV  153 (431)
T ss_pred             chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHH-HHHhhhccccccccCchhhhhhCCccCCEEE
Confidence                                 1111  11 1121111       1110 010                    11244999


Q ss_pred             EecCCCcc-----------cccccccCCCCcEEEEEeCchHHH----hhc--CCcceeecCCCChHhHHHHHHHhcCCCC
Q 044393          261 LDDVWKEL-----------DLETVGIPANCCKILLTTRLQQVC----DRM--GCDTRIKLDALDQAEGLDLLREHAGIDV  323 (513)
Q Consensus       261 LDd~~~~~-----------~~~~l~~~~~~~~iivTtr~~~v~----~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~  323 (513)
                      +|+.....           +|.......+-.+||++|-+....    ..+  ...+.+.|...+.+.|.++...+.....
T Consensus       154 IdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~  233 (431)
T PF10443_consen  154 IDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT  233 (431)
T ss_pred             EcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence            99985432           233322233356899999875443    333  2346789999999999999998886321


Q ss_pred             CC-------------------CchHHHHHHHHHHhCCCchHHHHHHHHhcCC
Q 044393          324 AD-------------------TTLTDVSKRVADECKGLPLAIKVVGSALTGR  356 (513)
Q Consensus       324 ~~-------------------~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~  356 (513)
                      ..                   ..........+..+||=-.=+..+++.++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG  285 (431)
T PF10443_consen  234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG  285 (431)
T ss_pred             cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence            10                   1234456778888999989999999888854

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=97.98  E-value=0.00021  Score=69.42  Aligned_cols=192  Identities=14%  Similarity=0.104  Sum_probs=108.5

Q ss_pred             cccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------CCCeEEEEEEcCCCC
Q 044393          152 FSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------IFDEVGIATVSQDPD  217 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------~f~~~~wv~~~~~~~  217 (513)
                      +...+|.+...+.|...+.++.. +...++|+.|+||+++|..+++..-...             ......|+.-.....
T Consensus         3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~   82 (314)
T PRK07399          3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ   82 (314)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence            34567999999999999988874 7899999999999999999988764321             112223332110000


Q ss_pred             hHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEe
Q 044393          218 IINVQSELVKWLGWE---LKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTT  286 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~---~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTt  286 (513)
                      -...-..-+...+..   ......++.. .+...+..  ..+++-++|+|++.....      +..+..|. .+.+|++|
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~  160 (314)
T PRK07399         83 GKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA  160 (314)
T ss_pred             ccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence            000001111111100   0111222222 22322221  124677999999865532      22233333 45566666


Q ss_pred             Cch-HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          287 RLQ-QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       287 r~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      .+. .+...+. -...+++.+++.++..+.+.+....+.    .......++..++|.|..+...
T Consensus       161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~  221 (314)
T PRK07399        161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIAN  221 (314)
T ss_pred             CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHH
Confidence            543 3333332 236899999999999999998753211    1112367899999999765543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.96  E-value=2.9e-05  Score=71.42  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        14 ~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p   51 (213)
T cd03235          14 VLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKP   51 (213)
T ss_pred             eeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            344454445566  89999999999999999999887653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.96  E-value=1.2e-05  Score=74.29  Aligned_cols=39  Identities=33%  Similarity=0.497  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .++.+...+.++  ..++|+|++|+|||||++.+..-....
T Consensus        19 ~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~   57 (235)
T COG1122          19 ALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPT   57 (235)
T ss_pred             eeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCC
Confidence            344444444555  899999999999999999998877654

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.95  E-value=6.5e-06  Score=74.27  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+.+....
T Consensus         8 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   44 (190)
T TIGR01166         8 LKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRP   44 (190)
T ss_pred             ecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444556  89999999999999999999887643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.95  E-value=2.7e-05  Score=70.29  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             cchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          156 ETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       156 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+-+..+..|.=.+..+  ..-+|+|++|+|||||++.+..+...
T Consensus        41 r~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~p   83 (257)
T COG1119          41 RNGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPP   83 (257)
T ss_pred             ECCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCC
Confidence            34456777777667777  78899999999999999999877654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.93  E-value=4.5e-05  Score=71.59  Aligned_cols=125  Identities=22%  Similarity=0.227  Sum_probs=67.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHH--------------HHHHHHhCC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQ--------------SELVKWLGW  231 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~--------------~~i~~~l~~  231 (513)
                      .+++|+|++|+|||||++.+++......   .++..-..++.+..      ++.+.+              .++++.++.
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l  105 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI  105 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence            7999999999999999999998865431   11221112233322      222222              112222222


Q ss_pred             CC------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cC---CCCcEEEEEeCchHHHhhc
Q 044393          232 EL------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETVG------IP---ANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       232 ~~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~---~~~~~iivTtr~~~v~~~~  295 (513)
                      ..      ...+..+ ..-.+..  .+.. ++-+++||++....|.....      ..   ..+..||++||+...+..+
T Consensus       106 ~~~~~~~~~~LSgGe~qrv~iar--aL~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~  182 (246)
T cd03237         106 EQILDREVPELSGGELQRVAIAA--CLSK-DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL  182 (246)
T ss_pred             HHHhhCChhhCCHHHHHHHHHHH--HHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            11      0011111 1111222  3443 66799999999987744321      11   1278999999998766554


Q ss_pred             CCcceeec
Q 044393          296 GCDTRIKL  303 (513)
Q Consensus       296 ~~~~~~~l  303 (513)
                      . .+.+.+
T Consensus       183 ~-d~i~~l  189 (246)
T cd03237         183 A-DRLIVF  189 (246)
T ss_pred             C-CEEEEE
Confidence            2 244444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.93  E-value=6.9e-05  Score=66.88  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE---EcCCCChHH------HHHHHHHHhCCCC-----
Q 044393          168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT---VSQDPDIIN------VQSELVKWLGWEL-----  233 (513)
Q Consensus       168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~-----  233 (513)
                      .+.++  .+++|+|++|+|||||++.++......   ...+++.   +. ..+...      ...++++.++...     
T Consensus        21 ~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~   94 (180)
T cd03214          21 SIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRP   94 (180)
T ss_pred             EECCC--CEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCC
Confidence            34455  899999999999999999999876542   2222221   11 111111      1112444444321     


Q ss_pred             -CCCCHH-HHHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc--CCC-CcEEEEEeCchHHHhhc
Q 044393          234 -KEKDEE-ERADRLRLMFSESKGRKILIILDDVWKELDLETV------GI--PAN-CCKILLTTRLQQVCDRM  295 (513)
Q Consensus       234 -~~~~~~-~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~--~~~-~~~iivTtr~~~v~~~~  295 (513)
                       ...+.. ...-.+..  .+.. .+-+++||++.+..|....      ..  ... +..||++||+......+
T Consensus        95 ~~~LS~G~~qrl~lar--al~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~  164 (180)
T cd03214          95 FNELSGGERQRVLLAR--ALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY  164 (180)
T ss_pred             cccCCHHHHHHHHHHH--HHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence             111221 11222222  4444 7889999999988764332      11  112 67899999997765443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.92  E-value=1.7e-05  Score=85.19  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        18 il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p   55 (635)
T PRK11147         18 LLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLL   55 (635)
T ss_pred             eEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            445555555566  89999999999999999999987654

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.92  E-value=0.00014  Score=75.65  Aligned_cols=153  Identities=15%  Similarity=0.132  Sum_probs=92.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|..|+|||.|++.+++.......-..+.|++      ..++...+...+..    ...    ..+.+  .+.  
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~----~~~----~~f~~--~y~--  376 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD----GKG----DSFRR--RYR--  376 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh----ccH----HHHHH--Hhh--
Confidence            4689999999999999999999876431122344543      23334444433321    011    11222  111  


Q ss_pred             CeEEEEEecCCCccc---cc-ccccC-----CCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393          255 RKILIILDDVWKELD---LE-TVGIP-----ANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR  316 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~---~~-~l~~~-----~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~  316 (513)
                      +.-+|+|||+.....   +. .+...     ..+..|||||+..         .+...+...-.+.|.+.+.+.-..++.
T Consensus       377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~  456 (617)
T PRK14086        377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR  456 (617)
T ss_pred             cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence            334899999965421   11 11111     1267788888852         233445555789999999999999999


Q ss_pred             HhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          317 EHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      +++..... .-.++++.-|++.+.+..-.|
T Consensus       457 kka~~r~l-~l~~eVi~yLa~r~~rnvR~L  485 (617)
T PRK14086        457 KKAVQEQL-NAPPEVLEFIASRISRNIREL  485 (617)
T ss_pred             HHHHhcCC-CCCHHHHHHHHHhccCCHHHH
Confidence            88764322 222677888888887765443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.92  E-value=6.2e-05  Score=70.06  Aligned_cols=26  Identities=27%  Similarity=0.534  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++....
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl~~p   37 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGLAQP   37 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            79999999999999999999987653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.92  E-value=1.6e-05  Score=71.08  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        18 ~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~   52 (182)
T cd03215          18 DVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPP   52 (182)
T ss_pred             ceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            333334455  89999999999999999999987654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.91  E-value=3.7e-05  Score=70.20  Aligned_cols=37  Identities=32%  Similarity=0.606  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        16 l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   52 (205)
T cd03226          16 LDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKE   52 (205)
T ss_pred             eeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34444444556  89999999999999999999987643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.90  E-value=2.7e-05  Score=73.57  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        27 il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p   64 (257)
T PRK11247         27 VLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETP   64 (257)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            445554445566  89999999999999999999987653

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.89  E-value=2.9e-05  Score=71.45  Aligned_cols=37  Identities=30%  Similarity=0.543  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        15 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          15 ALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             eecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344444445566  8999999999999999999998764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.89  E-value=0.00074  Score=65.39  Aligned_cols=173  Identities=16%  Similarity=0.152  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCC----------------eEEEEEEcCCCChHH
Q 044393          158 TKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD----------------EVGIATVSQDPDIIN  220 (513)
Q Consensus       158 r~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~----------------~~~wv~~~~~~~~~~  220 (513)
                      .+...+.+...+.++.. +.+.+.|+.|+||+++|..++..+-......                ...|+.......   
T Consensus         9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~---   85 (319)
T PRK08769          9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT---   85 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc---
Confidence            34566778888877764 4689999999999999999987764321111                011221000000   


Q ss_pred             HHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-H
Q 044393          221 VQSELVKWLGWE-LKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-Q  290 (513)
Q Consensus       221 ~~~~i~~~l~~~-~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~  290 (513)
                               +.. ......++..+.. +.+.+  ..+++-++|+|+++....      +..+..|.+++.+|++|++. .
T Consensus        86 ---------~~k~~~~I~idqIR~l~-~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~  155 (319)
T PRK08769         86 ---------GDKLRTEIVIEQVREIS-QKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPAR  155 (319)
T ss_pred             ---------cccccccccHHHHHHHH-HHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhh
Confidence                     000 0001122222222 21111  124667999999876532      44444555677777777753 3


Q ss_pred             HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          291 VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       291 v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +...+. -...+.+.+++.+++.+.+... +.   +   ...+..++..++|.|+....+.
T Consensus       156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~---~---~~~a~~~~~l~~G~p~~A~~~~  209 (319)
T PRK08769        156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV---S---ERAAQEALDAARGHPGLAAQWL  209 (319)
T ss_pred             CchHHHhhheEeeCCCcCHHHHHHHHHHc-CC---C---hHHHHHHHHHcCCCHHHHHHHh
Confidence            433332 2267899999999999888753 21   1   2346678999999999665443

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.89  E-value=2.6e-05  Score=75.80  Aligned_cols=37  Identities=27%  Similarity=0.531  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus         9 l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p   45 (302)
T TIGR01188         9 VDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRP   45 (302)
T ss_pred             EeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444555  89999999999999999999987654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.00097  Score=60.81  Aligned_cols=187  Identities=18%  Similarity=0.216  Sum_probs=111.7

Q ss_pred             hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc-CCCChHHHHHHHHHHhCCCCCCC
Q 044393          158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS-QDPDIINVQSELVKWLGWELKEK  236 (513)
Q Consensus       158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~  236 (513)
                      +.+.+..+...+..+ ..++.++|.-|+|||++.+.+......+    .+.-+.++ +..+...+...++..+..+ +..
T Consensus        36 h~e~l~~l~~~i~d~-qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~  109 (269)
T COG3267          36 HNEALLMLHAAIADG-QGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQ-PKV  109 (269)
T ss_pred             hhHHHHHHHHHHhcC-CceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccC-ccc
Confidence            455666676666655 2599999999999999999555554432    12223433 4445666777777777662 222


Q ss_pred             CH----HHHHHHHHHHHHhccCCe-EEEEEecCCCcc--cccccccCC---C----CcEEEEEeCchH-------HHhhc
Q 044393          237 DE----EERADRLRLMFSESKGRK-ILIILDDVWKEL--DLETVGIPA---N----CCKILLTTRLQQ-------VCDRM  295 (513)
Q Consensus       237 ~~----~~~~~~l~~~~~l~~~~~-~LlVLDd~~~~~--~~~~l~~~~---~----~~~iivTtr~~~-------v~~~~  295 (513)
                      ..    ......+..  ...++++ ..++.||.....  .++.+....   .    .-+|+..-+.+-       +....
T Consensus       110 ~~~~~~e~~~~~L~a--l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~  187 (269)
T COG3267         110 NVNAVLEQIDRELAA--LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLREL  187 (269)
T ss_pred             hhHHHHHHHHHHHHH--HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhh
Confidence            22    223333333  2334566 999999985432  222222111   1    123454444321       11111


Q ss_pred             -CCcce-eecCCCChHhHHHHHHHhcCCCCC--CCchHHHHHHHHHHhCCCchHHHHHHHH
Q 044393          296 -GCDTR-IKLDALDQAEGLDLLREHAGIDVA--DTTLTDVSKRVADECKGLPLAIKVVGSA  352 (513)
Q Consensus       296 -~~~~~-~~l~~L~~~e~~~lf~~~~~~~~~--~~~~~~~~~~i~~~~~G~PLai~~~~~~  352 (513)
                       .-... |.+.|++.++...++..+.+....  +-...+....|.....|.|.+|+.++..
T Consensus       188 ~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~  248 (269)
T COG3267         188 EQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL  248 (269)
T ss_pred             hheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence             11123 899999999999998887753221  2223667889999999999999888753

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.88  E-value=0.002  Score=63.69  Aligned_cols=202  Identities=10%  Similarity=0.073  Sum_probs=124.8

Q ss_pred             ccccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          151 FFSSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      ..+...||+.+++.+..++..    ....-+-|.|-+|.|||.+...++.+......-..+++++...-.....++..|.
T Consensus       148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~  227 (529)
T KOG2227|consen  148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF  227 (529)
T ss_pred             CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence            345577999999988888743    3457899999999999999999998887643333456676665556667777777


Q ss_pred             HHhCC-CCCCCCHHHHHHHHHHHHHhccC-CeEEEEEecCCCcc-----ccccc--ccCCCCcEEEEEeCchH------H
Q 044393          227 KWLGW-ELKEKDEEERADRLRLMFSESKG-RKILIILDDVWKEL-----DLETV--GIPANCCKILLTTRLQQ------V  291 (513)
Q Consensus       227 ~~l~~-~~~~~~~~~~~~~l~~~~~l~~~-~~~LlVLDd~~~~~-----~~~~l--~~~~~~~~iivTtr~~~------v  291 (513)
                      ..+-. ........+....+..  ...+. ..+|+|||+.+...     .+-.+  ++..+++++|+.---..      +
T Consensus       228 ~~~~q~~~s~~~~~~~~~~~~~--h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~  305 (529)
T KOG2227|consen  228 SSLLQDLVSPGTGMQHLEKFEK--HTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF  305 (529)
T ss_pred             HHHHHHhcCCchhHHHHHHHHH--HHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence            66621 1111122333444444  33332 47899999985432     12222  13334777665544211      1


Q ss_pred             HhhcC-----CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhc
Q 044393          292 CDRMG-----CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALT  354 (513)
Q Consensus       292 ~~~~~-----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~  354 (513)
                      ...+.     ....+...|.+.++-.++|..+.............++-.+++|.|.-=-+..+..+.+
T Consensus       306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R  373 (529)
T KOG2227|consen  306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR  373 (529)
T ss_pred             hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence            11111     2356788999999999999998865444444455667777777766554444444443

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.88  E-value=0.00032  Score=70.28  Aligned_cols=169  Identities=18%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +....|-+...+.|...+.    .         ..++-+.++|++|+|||+||+.+++.....  |     +.+..    
T Consensus       144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~----  212 (398)
T PTZ00454        144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG----  212 (398)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence            3445566666666655442    1         124679999999999999999999876532  2     11111    


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------c------ccccc---c---C
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------D------LETVG---I---P  276 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~------~~~l~---~---~  276 (513)
                      .    .+....    .+.........+ .  ......+.+|+|||++...          +      +..+.   .   .
T Consensus       213 s----~l~~k~----~ge~~~~lr~lf-~--~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~  281 (398)
T PTZ00454        213 S----EFVQKY----LGEGPRMVRDVF-R--LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ  281 (398)
T ss_pred             H----HHHHHh----cchhHHHHHHHH-H--HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence            1    111111    011111111111 1  2223478999999975321          0      11111   0   1


Q ss_pred             CCCcEEEEEeCchHHHhh--c---CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          277 ANCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       277 ~~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ..+..||+||......+.  +   .....+.+...+.++-..+|+..........+  -....+++.+.|..-
T Consensus       282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~sg  352 (398)
T PTZ00454        282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKISA  352 (398)
T ss_pred             CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCCH
Confidence            125678888886543221  1   22356889888999988888876643222211  124567777777654

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=97.88  E-value=0.00097  Score=64.70  Aligned_cols=175  Identities=14%  Similarity=0.163  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC---CeE-----EEEEEcCCCChHHHHHHHHHHh
Q 044393          159 KSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF---DEV-----GIATVSQDPDIINVQSELVKWL  229 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i~~~l  229 (513)
                      ....+.|...+.++.. +...+.|+.|+||+++|..++...--....   .|-     .++..+..+|+..+..      
T Consensus         8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------   81 (325)
T PRK06871          8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP------   81 (325)
T ss_pred             HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc------
Confidence            4456778888877653 678899999999999999998876432111   000     0000001111000000      


Q ss_pred             CCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-HHHhhcC-Ccce
Q 044393          230 GWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-QVCDRMG-CDTR  300 (513)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~v~~~~~-~~~~  300 (513)
                       ........++..+....+. .-..+++-++|+|++.....      +..+..|.++..+|++|.+. .+...+. --..
T Consensus        82 -~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~  160 (325)
T PRK06871         82 -IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT  160 (325)
T ss_pred             -ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence             0001112233332222211 22235667888999876532      44444566677777777764 3443332 2368


Q ss_pred             eecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          301 IKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      +.+.+++.++..+.+....+..      ...+...+..++|.|+..
T Consensus       161 ~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A  200 (325)
T PRK06871        161 WLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA  200 (325)
T ss_pred             EeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence            9999999999999988764311      223567788999999644

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.88  E-value=1.2e-05  Score=78.13  Aligned_cols=39  Identities=23%  Similarity=0.376  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        21 ~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p   59 (306)
T PRK13537         21 LVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHP   59 (306)
T ss_pred             EEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3555565556666  89999999999999999999987654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.88  E-value=9.4e-06  Score=87.17  Aligned_cols=38  Identities=32%  Similarity=0.524  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus       334 il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p  371 (635)
T PRK11147        334 LVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQA  371 (635)
T ss_pred             EEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            455555455556  89999999999999999999987653

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.87  E-value=0.00036  Score=72.70  Aligned_cols=145  Identities=21%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      +-+.++||+|+|||+||+.+++.....       ++.++..    ++.    ...    .+.........+.   .....
T Consensus        89 ~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~~----~~~----~~~----~g~~~~~l~~~f~---~a~~~  146 (495)
T TIGR01241        89 KGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGS----DFV----EMF----VGVGASRVRDLFE---QAKKN  146 (495)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccHH----HHH----HHH----hcccHHHHHHHHH---HHHhc
Confidence            468899999999999999999876432       2222211    111    110    0111112222222   22234


Q ss_pred             CeEEEEEecCCCccc----------------ccccc------cCCCCcEEEEEeCchHHHh-----hcCCcceeecCCCC
Q 044393          255 RKILIILDDVWKELD----------------LETVG------IPANCCKILLTTRLQQVCD-----RMGCDTRIKLDALD  307 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~----------------~~~l~------~~~~~~~iivTtr~~~v~~-----~~~~~~~~~l~~L~  307 (513)
                      .+.+|+|||++....                +..+.      ...++..||.||......+     .-.-...+.+...+
T Consensus       147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd  226 (495)
T TIGR01241       147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD  226 (495)
T ss_pred             CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence            678999999854210                11111      0111456677776543211     11233678899999


Q ss_pred             hHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          308 QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       308 ~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      .++-.++|+.+........  ......+++.+.|..
T Consensus       227 ~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~s  260 (495)
T TIGR01241       227 IKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFS  260 (495)
T ss_pred             HHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCC
Confidence            9999999988775322111  223467888888854

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.87  E-value=9.6e-05  Score=68.12  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        19 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (216)
T TIGR00960        19 LDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKP   55 (216)
T ss_pred             EEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            33444444555  89999999999999999999987643

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.87  E-value=5.6e-05  Score=70.69  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        16 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p   52 (235)
T cd03261          16 LKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRP   52 (235)
T ss_pred             EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            33444444556  89999999999999999999987653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.87  E-value=0.0001  Score=67.71  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        17 l~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~   53 (211)
T cd03225          17 LDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGP   53 (211)
T ss_pred             ecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34444444455  89999999999999999999987643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.87  E-value=0.00033  Score=77.67  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=90.2

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC----CeEEEEEEcCCCChHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~  224 (513)
                      +....+.+||+.++..+...|......-+.++|++|+|||+++..++.........    ...+|..     ++    ..
T Consensus       169 ~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~----~~  239 (852)
T TIGR03346       169 EGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DM----GA  239 (852)
T ss_pred             CCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eH----HH
Confidence            44566789999999999999977766777899999999999999999887542111    2222221     11    11


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccC-CC--CcEEEEEeCchHHH
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIP-AN--CCKILLTTRLQQVC  292 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~-~~--~~~iivTtr~~~v~  292 (513)
                      ++.  +....+.........+..  ....+++.+|++|++....         +...+..+ ..  ...+|.+|..++.-
T Consensus       240 l~a--~~~~~g~~e~~l~~~l~~--~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r  315 (852)
T TIGR03346       240 LIA--GAKYRGEFEERLKAVLNE--VTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR  315 (852)
T ss_pred             Hhh--cchhhhhHHHHHHHHHHH--HHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence            110  011111111122222222  1122468999999986432         11122111 11  45666666554331


Q ss_pred             hh-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393          293 DR-------MGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       293 ~~-------~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      ..       ......+.+...+.++...++....
T Consensus       316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~  349 (852)
T TIGR03346       316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK  349 (852)
T ss_pred             HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence            11       1123568888889999999987654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.87  E-value=3.1e-05  Score=68.90  Aligned_cols=104  Identities=20%  Similarity=0.255  Sum_probs=72.2

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW  228 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~  228 (513)
                      |......+|.+..++.|.-...+++.+-+.|.||+|+||||-+..+++.+-...+-+.+.-.+.|.+..+.-+-..| +.
T Consensus        23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I-K~  101 (333)
T KOG0991|consen   23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI-KM  101 (333)
T ss_pred             chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH-HH
Confidence            45566678999999999988899999999999999999999999998888765444555555555544433222222 11


Q ss_pred             hCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc
Q 044393          229 LGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL  268 (513)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~  268 (513)
                      +               .++-..+..|+.-++|||+.++..
T Consensus       102 F---------------AQ~kv~lp~grhKIiILDEADSMT  126 (333)
T KOG0991|consen  102 F---------------AQKKVTLPPGRHKIIILDEADSMT  126 (333)
T ss_pred             H---------------HHhhccCCCCceeEEEeeccchhh
Confidence            1               111114555788899999997763

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.87  E-value=2.2e-05  Score=82.64  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        16 il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p   53 (530)
T PRK15064         16 LFENISVKFGGG--NRYGLIGANGCGKSTFMKILGGDLEP   53 (530)
T ss_pred             eEeCCEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444445556  89999999999999999999987653

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.86  E-value=2.6e-05  Score=71.71  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        26 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   63 (214)
T PRK13543         26 VFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHV   63 (214)
T ss_pred             eeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            445555555566  89999999999999999999987653

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.85  E-value=0.00021  Score=73.32  Aligned_cols=156  Identities=21%  Similarity=0.255  Sum_probs=86.1

Q ss_pred             cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCeEEEEEEcCC
Q 044393          152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDEVGIATVSQD  215 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~  215 (513)
                      +....|.+..++.+...+.-             ...+-+.++||+|+|||++|+.+++.......   .....++++...
T Consensus       181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~  260 (512)
T TIGR03689       181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP  260 (512)
T ss_pred             HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence            34455677777777766521             12356899999999999999999998754311   112333433321


Q ss_pred             CChHHHHHHHHHHhCCCCCCCCHHH---HHHHHHHHHHhccCCeEEEEEecCCCcc---------c-----cccccc---
Q 044393          216 PDIINVQSELVKWLGWELKEKDEEE---RADRLRLMFSESKGRKILIILDDVWKEL---------D-----LETVGI---  275 (513)
Q Consensus       216 ~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~-----~~~l~~---  275 (513)
                      .        ++..    ..+.....   .....+.  ....+++++|+||+++...         +     +..+..   
T Consensus       261 e--------Ll~k----yvGete~~ir~iF~~Ar~--~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD  326 (512)
T TIGR03689       261 E--------LLNK----YVGETERQIRLIFQRARE--KASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD  326 (512)
T ss_pred             h--------hccc----ccchHHHHHHHHHHHHHH--HhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence            1        1100    01111111   1111111  2233578999999996431         1     111111   


Q ss_pred             ---CCCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCC
Q 044393          276 ---PANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGI  321 (513)
Q Consensus       276 ---~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~  321 (513)
                         ..++..||.||......+. +    .....+++...+.++..++|+.+...
T Consensus       327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~  380 (512)
T TIGR03689       327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD  380 (512)
T ss_pred             ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence               1124556666665433221 1    22356899999999999999988753

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.85  E-value=4e-05  Score=70.86  Aligned_cols=38  Identities=32%  Similarity=0.554  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        15 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   52 (220)
T cd03265          15 AVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKP   52 (220)
T ss_pred             eeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444445556  89999999999999999999987643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.85  E-value=0.0001  Score=69.51  Aligned_cols=130  Identities=21%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCe-EEEEEEcCCCCh--------HH-----------HHHHH
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDE-VGIATVSQDPDI--------IN-----------VQSEL  225 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~-~~wv~~~~~~~~--------~~-----------~~~~i  225 (513)
                      +..+  .+++|+|++|+|||||++.++........   ++. ....++.+.+..        ..           ....+
T Consensus        27 i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  104 (251)
T PRK09544         27 LKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPA  104 (251)
T ss_pred             EcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHH
Confidence            3455  89999999999999999999987654210   110 011222332211        11           11222


Q ss_pred             HHHhCCCC------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc--CCC-CcEEEEEeCch
Q 044393          226 VKWLGWEL------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GI--PAN-CCKILLTTRLQ  289 (513)
Q Consensus       226 ~~~l~~~~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~--~~~-~~~iivTtr~~  289 (513)
                      ++.++...      ...+..+ ..-.+..  .+.. ++-+++||++.+..|....      ..  ... +..||++||+.
T Consensus       105 l~~~gl~~~~~~~~~~LSgGq~qrv~lar--al~~-~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~  181 (251)
T PRK09544        105 LKRVQAGHLIDAPMQKLSGGETQRVLLAR--ALLN-RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL  181 (251)
T ss_pred             HHHcCChHHHhCChhhCCHHHHHHHHHHH--HHhc-CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            33333211      0011111 1111222  3333 6679999999998774332      11  112 67899999998


Q ss_pred             HHHhhcCCcceeecC
Q 044393          290 QVCDRMGCDTRIKLD  304 (513)
Q Consensus       290 ~v~~~~~~~~~~~l~  304 (513)
                      ....... .+.+.+.
T Consensus       182 ~~i~~~~-d~i~~l~  195 (251)
T PRK09544        182 HLVMAKT-DEVLCLN  195 (251)
T ss_pred             HHHHHhC-CEEEEEC
Confidence            7665442 2444443

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.85  E-value=7.8e-05  Score=68.20  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+.+...
T Consensus        18 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         18 FSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             EeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            33333334455  8999999999999999999998764

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.84  E-value=8.5e-05  Score=68.12  Aligned_cols=30  Identities=33%  Similarity=0.571  Sum_probs=25.6

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.++.....
T Consensus        23 i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~   52 (210)
T cd03269          23 VEKG--EIFGLLGPNGAGKTTTIRMILGIILP   52 (210)
T ss_pred             EcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4455  89999999999999999999987643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=97.84  E-value=3.2e-05  Score=73.02  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++...
T Consensus        17 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         17 LRGLNLEVRPG--EVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             eecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCc
Confidence            34444444555  899999999999999999999873

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.84  E-value=4.1e-05  Score=68.19  Aligned_cols=36  Identities=28%  Similarity=0.507  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        17 ~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~   52 (178)
T cd03229          17 NDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEP   52 (178)
T ss_pred             eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3333334455  89999999999999999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.83  E-value=0.00011  Score=69.58  Aligned_cols=37  Identities=27%  Similarity=0.444  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   53 (255)
T PRK11248         17 LEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPY   53 (255)
T ss_pred             EeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444556  89999999999999999999987653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.83  E-value=1.7e-05  Score=77.11  Aligned_cols=38  Identities=26%  Similarity=0.531  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+.+....
T Consensus        19 ~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p   56 (303)
T TIGR01288        19 VVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISP   56 (303)
T ss_pred             EEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            445555555666  89999999999999999999987643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.83  E-value=0.00021  Score=78.85  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEE-EEEEcCCCChHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVG-IATVSQDPDIINVQS  223 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~-wv~~~~~~~~~~~~~  223 (513)
                      +....+++||+.++..++..|......-+.++|++|+|||++|+.++........    ....+ .+.++.      +  
T Consensus       174 ~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l--  245 (857)
T PRK10865        174 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L--  245 (857)
T ss_pred             cCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h--
Confidence            4556778999999999999998776677889999999999999999988753211    11222 222221      0  


Q ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccccccC-C--CCcEEEEEeCchHH
Q 044393          224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLETVGIP-A--NCCKILLTTRLQQV  291 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~l~~~-~--~~~~iivTtr~~~v  291 (513)
                        +.  +....+.........+..  ....+++.+|++|++....         +...+..+ .  +..++|-+|..++.
T Consensus       246 --~a--g~~~~g~~e~~lk~~~~~--~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~  319 (857)
T PRK10865        246 --VA--GAKYRGEFEERLKGVLND--LAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY  319 (857)
T ss_pred             --hh--ccchhhhhHHHHHHHHHH--HHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence              00  001111111122222222  1122478999999985442         12222222 1  14566666665443


Q ss_pred             Hhh-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393          292 CDR-------MGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       292 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      -..       ......+.+...+.++...++....
T Consensus       320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~  354 (857)
T PRK10865        320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK  354 (857)
T ss_pred             HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence            111       1112356666668888888886554

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=97.82  E-value=6.9e-05  Score=72.70  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        23 l~~vsl~i~~G--e~v~iiG~nGsGKSTLl~~L~Gl~~p   59 (305)
T PRK13651         23 LDNVSVEINQG--EFIAIIGQTGSGKTTFIEHLNALLLP   59 (305)
T ss_pred             eeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            34444444556  89999999999999999999987643

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.82  E-value=0.00036  Score=71.10  Aligned_cols=148  Identities=15%  Similarity=0.073  Sum_probs=87.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|+.|+|||+|++.+++.....  ...+++++      ...+...+...+...    .    ....+.   ... 
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~----~----~~~f~~---~~~-  201 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG----E----MQRFRQ---FYR-  201 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc----h----HHHHHH---Hcc-
Confidence            568999999999999999999988643  22234443      223334444443211    1    111222   122 


Q ss_pred             CeEEEEEecCCCccc----ccccccC-----CCCcEEEEEeCch---------HHHhhcCCcceeecCCCChHhHHHHHH
Q 044393          255 RKILIILDDVWKELD----LETVGIP-----ANCCKILLTTRLQ---------QVCDRMGCDTRIKLDALDQAEGLDLLR  316 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~----~~~l~~~-----~~~~~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~  316 (513)
                      ..-+|++||+.....    .+.+...     ..|..||+||...         .+...+.....+.+.+++.++-..++.
T Consensus       202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~  281 (445)
T PRK12422        202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE  281 (445)
T ss_pred             cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence            445899999855321    1111111     1266788888642         222333444688999999999999999


Q ss_pred             HhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          317 EHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      +.+.... ..-.+++..-|+..+.|.-
T Consensus       282 ~k~~~~~-~~l~~evl~~la~~~~~di  307 (445)
T PRK12422        282 RKAEALS-IRIEETALDFLIEALSSNV  307 (445)
T ss_pred             HHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence            8775332 1222566676777777554

>TIGR01069 mutS2 MutS2 family protein

Probab=97.81  E-value=2.7e-05  Score=84.44  Aligned_cols=185  Identities=16%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh-hhc-CCC-Ce---EEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL-RQE-KIF-DE---VGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRL  247 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~-~~~-~~f-~~---~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~  247 (513)
                      .++++|+||+|.|||||.+.+.... ..+ +.| ..   ....++.+.+.....-..+.+.+..    -+ .+.. .+..
T Consensus       322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt----fS-~~m~-~~~~  395 (771)
T TIGR01069       322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLST----FS-GHMK-NISA  395 (771)
T ss_pred             ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhH----HH-HHHH-HHHH
Confidence            3799999999999999999998762 221 111 00   0000011111000000111111100    00 1111 1222


Q ss_pred             HHHhccCCeEEEEEecCCCccccccc-------cc--CCCCcEEEEEeCchHHHhhcCCcceeecCCCChH-hHHHHHHH
Q 044393          248 MFSESKGRKILIILDDVWKELDLETV-------GI--PANCCKILLTTRLQQVCDRMGCDTRIKLDALDQA-EGLDLLRE  317 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~~~~~~~~~l-------~~--~~~~~~iivTtr~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~  317 (513)
                      ++... ..+-|++||++....|...-       ..  ...|+.+|+|||...+.........+.-..+..+ +... +..
T Consensus       396 il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y  473 (771)
T TIGR01069       396 ILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY  473 (771)
T ss_pred             HHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence            22222 37899999999876553221       11  1138899999999876543211111111111111 1100 111


Q ss_pred             hcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhh
Q 044393          318 HAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQN  370 (513)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~  370 (513)
                      +.-...+.   ...|-.|++++ |+|-.+..-|..+..........+++.|..
T Consensus       474 kl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~  522 (771)
T TIGR01069       474 KLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA  522 (771)
T ss_pred             EECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            11111111   34577788777 888888888877765555566666666654

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=97.80  E-value=0.00013  Score=67.57  Aligned_cols=29  Identities=41%  Similarity=0.645  Sum_probs=25.2

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.++  .+++|+|++|+|||||++.+.+...
T Consensus        23 i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        23 VPKN--SVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             EcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4455  8999999999999999999998764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.80  E-value=0.00017  Score=66.88  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        24 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~   60 (224)
T TIGR02324        24 LKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLP   60 (224)
T ss_pred             EecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444556  89999999999999999999987643

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.80  E-value=2.6e-05  Score=73.70  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        18 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         18 VLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             eeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            444455445566  8999999999999999999988754

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.80  E-value=0.0003  Score=71.09  Aligned_cols=169  Identities=17%  Similarity=0.173  Sum_probs=93.7

Q ss_pred             ccccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          151 FFSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      .+....|.+..++.|...+.-             ....-+.++|++|+|||+||+.+++.....  |     +.+... +
T Consensus       181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~s-e  252 (438)
T PTZ00361        181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVGS-E  252 (438)
T ss_pred             CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEecc-h
Confidence            334455777777777665521             123578899999999999999999976532  3     222111 1


Q ss_pred             hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc----------------ccccc------
Q 044393          218 IINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD----------------LETVG------  274 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~----------------~~~l~------  274 (513)
                         +    ....    .+....    .++.++ ....+.+.+|+||++.....                +..+.      
T Consensus       253 ---L----~~k~----~Ge~~~----~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~  317 (438)
T PTZ00361        253 ---L----IQKY----LGDGPK----LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF  317 (438)
T ss_pred             ---h----hhhh----cchHHH----HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence               1    1110    011111    122211 22234788999999743210                01111      


Q ss_pred             cCCCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          275 IPANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       275 ~~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ....+..||+||+.....+. +    .....+.+...+.++..++|..+.........  -....++..+.|+--
T Consensus       318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d--vdl~~la~~t~g~sg  390 (438)
T PTZ00361        318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED--VDLEEFIMAKDELSG  390 (438)
T ss_pred             cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC--cCHHHHHHhcCCCCH
Confidence            01126688888886544332 1    12367899999999999999977643221111  123556667766654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.80  E-value=2.8e-05  Score=82.26  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        21 ~il~~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~~p   59 (556)
T PRK11819         21 QILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKE   59 (556)
T ss_pred             eeeeCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3455555555666  89999999999999999999998754

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=97.80  E-value=0.0026  Score=61.56  Aligned_cols=180  Identities=16%  Similarity=0.170  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CCCeEEEEEEcCCCCh
Q 044393          159 KSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IFDEVGIATVSQDPDI  218 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~  218 (513)
                      ....+.+...+..+.. +.+.+.|+.|+||+++|..++...--..                   |.| ..|+.-...   
T Consensus         9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~---   84 (319)
T PRK06090          9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE---   84 (319)
T ss_pred             HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC---
Confidence            4456677777777653 5789999999999999999987664221                   111 112211000   


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFS--ESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-  289 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-  289 (513)
                                    ......++... +...+.  -..++.-++|+|++.....      +..+..|.+++.+|++|.+. 
T Consensus        85 --------------~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~  149 (319)
T PRK06090         85 --------------GKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQK  149 (319)
T ss_pred             --------------CCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence                          00112233322 222111  1224566889999866532      44444555677777776664 


Q ss_pred             HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHH
Q 044393          290 QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKL  368 (513)
Q Consensus       290 ~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l  368 (513)
                      .+...+. --..+.+.+++.+++.+.+.... .   .     ....++..++|.|+....+   +........+.++..+
T Consensus       150 ~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-~---~-----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l  217 (319)
T PRK06090        150 RLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-I---T-----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL  217 (319)
T ss_pred             hChHHHHhcceeEeCCCCCHHHHHHHHHHcC-C---c-----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence            4444432 23688999999999999887541 1   1     2356789999999976544   3333333444444444


Q ss_pred             h
Q 044393          369 Q  369 (513)
Q Consensus       369 ~  369 (513)
                      .
T Consensus       218 ~  218 (319)
T PRK06090        218 V  218 (319)
T ss_pred             H
Confidence            3

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.79  E-value=0.00012  Score=66.82  Aligned_cols=37  Identities=27%  Similarity=0.513  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        17 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p   53 (204)
T PRK13538         17 FSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARP   53 (204)
T ss_pred             EecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444445556  89999999999999999999987653

>CHL00181 cbbX CbbX; Provisional

Probab=97.79  E-value=0.00054  Score=65.70  Aligned_cols=128  Identities=14%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.++|++|+||||+|+.+++.....+.-....|+.++..    +    +...+..    .........+.    ..  
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g----~~~~~~~~~l~----~a--  121 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIG----HTAPKTKEVLK----KA--  121 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhc----cchHHHHHHHH----Hc--
Confidence            45889999999999999999887654322222224444411    1    2221111    11111112222    11  


Q ss_pred             CeEEEEEecCCCc-----------ccccccc---cC-CCCcEEEEEeCchHHHhh--------cCCcceeecCCCChHhH
Q 044393          255 RKILIILDDVWKE-----------LDLETVG---IP-ANCCKILLTTRLQQVCDR--------MGCDTRIKLDALDQAEG  311 (513)
Q Consensus       255 ~~~LlVLDd~~~~-----------~~~~~l~---~~-~~~~~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~e~  311 (513)
                      ..-+|+||++...           .....+.   .. ..+..||+++........        -.....+.+++++.++.
T Consensus       122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el  201 (287)
T CHL00181        122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL  201 (287)
T ss_pred             cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence            2349999998642           0111111   11 125667777754332111        11235799999999999


Q ss_pred             HHHHHHhcC
Q 044393          312 LDLLREHAG  320 (513)
Q Consensus       312 ~~lf~~~~~  320 (513)
                      .+++...+.
T Consensus       202 ~~I~~~~l~  210 (287)
T CHL00181        202 LQIAKIMLE  210 (287)
T ss_pred             HHHHHHHHH
Confidence            999988774

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.79  E-value=0.0001  Score=68.85  Aligned_cols=37  Identities=27%  Similarity=0.537  Sum_probs=29.1

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        21 l~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~   57 (233)
T cd03258          21 LKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERP   57 (233)
T ss_pred             eecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444556  89999999999999999999887654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=97.79  E-value=3.4e-05  Score=72.10  Aligned_cols=37  Identities=38%  Similarity=0.583  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        36 il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          36 ALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             eeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            344444444555  8999999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.79  E-value=2.7e-05  Score=72.26  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        22 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         22 ILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             eeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccC
Confidence            445554445556  8999999999999999999998754

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.79  E-value=2.8e-05  Score=71.52  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        16 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          16 LDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             eeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444556  8999999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.79  E-value=2.1e-05  Score=71.21  Aligned_cols=41  Identities=27%  Similarity=0.469  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ...++++.-.+..+  ..++++|++|+||||+.+++.+-.+..
T Consensus        14 ~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiept   54 (309)
T COG1125          14 KKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEPT   54 (309)
T ss_pred             ceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCCC
Confidence            34445555555556  899999999999999999998877653

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.79  E-value=0.00011  Score=67.21  Aligned_cols=35  Identities=34%  Similarity=0.577  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        17 ~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          17 DDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             eeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            3333334455  8999999999999999999988654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK08181 transposase; Validated

Probab=97.78  E-value=0.00021  Score=67.48  Aligned_cols=36  Identities=33%  Similarity=0.329  Sum_probs=28.5

Q ss_pred             HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ....|+..+  .-+.++|++|+|||.||..+++.....
T Consensus        98 ~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~  133 (269)
T PRK08181         98 AGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIEN  133 (269)
T ss_pred             HHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence            333566655  679999999999999999999877543

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.78  E-value=0.00024  Score=69.37  Aligned_cols=103  Identities=10%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             HHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe-EEEEEEcCC-CChHHHHHHHHHHhCCCCCCCCHH
Q 044393          163 NQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE-VGIATVSQD-PDIINVQSELVKWLGWELKEKDEE  239 (513)
Q Consensus       163 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~  239 (513)
                      ..+++.+.. +..+.+.|+|++|+|||||++.+++..... +-+. .+|+.+.+. .++.++.+.+...+..+....+..
T Consensus       121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~  199 (380)
T PRK12608        121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD  199 (380)
T ss_pred             HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence            345565543 444899999999999999999999987654 2233 366666654 466778888877766544333222


Q ss_pred             HH------HHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          240 ER------ADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       240 ~~------~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ..      .....+.+. ..|++.+||+|++...
T Consensus       200 ~~~~v~~~~~~~Ae~f~-~~GkdVVLvlDsltr~  232 (380)
T PRK12608        200 EHIRVAELVLERAKRLV-EQGKDVVILLDSLTRL  232 (380)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCCEEEEEeCcHHH
Confidence            21      112222222 3469999999998543

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.78  E-value=0.00022  Score=68.46  Aligned_cols=128  Identities=15%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      .-+.++|++|+||||+|+.++............-++.++.    .+    ++..+.    +.+.......+.   ..   
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~----g~~~~~~~~~~~---~a---  120 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYI----GHTAPKTKEILK---RA---  120 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhc----ccchHHHHHHHH---Hc---
Confidence            3588999999999999999888776543222222444442    11    221111    111112222222   11   


Q ss_pred             CeEEEEEecCCCcc------cc-----ccc---ccC-CCCcEEEEEeCchHHHhhc--------CCcceeecCCCChHhH
Q 044393          255 RKILIILDDVWKEL------DL-----ETV---GIP-ANCCKILLTTRLQQVCDRM--------GCDTRIKLDALDQAEG  311 (513)
Q Consensus       255 ~~~LlVLDd~~~~~------~~-----~~l---~~~-~~~~~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~e~  311 (513)
                      ..-+|+|||+....      ++     ..+   ... ..+.+||+++.....-...        .....+.+++++.++-
T Consensus       121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl  200 (284)
T TIGR02880       121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL  200 (284)
T ss_pred             cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence            33599999986320      11     111   111 1256677776543221111        1135789999999999


Q ss_pred             HHHHHHhcC
Q 044393          312 LDLLREHAG  320 (513)
Q Consensus       312 ~~lf~~~~~  320 (513)
                      .+++...+.
T Consensus       201 ~~I~~~~l~  209 (284)
T TIGR02880       201 LVIAGLMLK  209 (284)
T ss_pred             HHHHHHHHH
Confidence            999888764

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.78  E-value=9.7e-05  Score=68.40  Aligned_cols=36  Identities=33%  Similarity=0.437  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        16 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          16 LFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             eeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            33344444555  8999999999999999999987764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.78  E-value=3.4e-05  Score=71.15  Aligned_cols=129  Identities=19%  Similarity=0.222  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE-----EEcCCCChHHHHHHHHHHhCCCCC-
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA-----TVSQDPDIINVQSELVKWLGWELK-  234 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-----~~~~~~~~~~~~~~i~~~l~~~~~-  234 (513)
                      .++.+...+.++  .+++|+|.+|+|||||++.+..-.+..  ...+.|-     ..+ .....+...++++.++.... 
T Consensus        28 avd~Vsf~i~~g--e~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~  102 (268)
T COG4608          28 AVDGVSFSIKEG--ETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEF  102 (268)
T ss_pred             EecceeEEEcCC--CEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHH
Confidence            344555555666  899999999999999999999988754  2222221     111 11233445666666664321 


Q ss_pred             ------CCCHHHHHH-HHHHHHHhccCCeEEEEEecCCCcccccc---c---ccCCC---CcEEEEEeCchHHHhhcCC
Q 044393          235 ------EKDEEERAD-RLRLMFSESKGRKILIILDDVWKELDLET---V---GIPAN---CCKILLTTRLQQVCDRMGC  297 (513)
Q Consensus       235 ------~~~~~~~~~-~l~~~~~l~~~~~~LlVLDd~~~~~~~~~---l---~~~~~---~~~iivTtr~~~v~~~~~~  297 (513)
                            +-+-.+++. .+..  .+. -++-++|.|++.+.+|...   +   .....   |...++.||+-.+...+..
T Consensus       103 ~~ryPhelSGGQrQRi~IAR--ALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd  178 (268)
T COG4608         103 LYRYPHELSGGQRQRIGIAR--ALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD  178 (268)
T ss_pred             hhcCCcccCchhhhhHHHHH--HHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence                  111112211 1222  333 3888999999988876421   1   11111   8899999999988887654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.78  E-value=9.4e-05  Score=66.76  Aligned_cols=121  Identities=20%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh--h-cC--CCCe--------EEEEEEcCCCCh---HHHHHHHH
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR--Q-EK--IFDE--------VGIATVSQDPDI---INVQSELV  226 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~--~-~~--~f~~--------~~wv~~~~~~~~---~~~~~~i~  226 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++....  . .+  .|+.        ....++.+.+..   ..+...+.
T Consensus        24 ~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (192)
T cd03232          24 NNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR  101 (192)
T ss_pred             EccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence            3333334455  8999999999999999999997532  1 11  1110        112233333221   12222221


Q ss_pred             HHhCCCCCCCCHH-HHHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc--CCCCcEEEEEeCchH
Q 044393          227 KWLGWELKEKDEE-ERADRLRLMFSESKGRKILIILDDVWKELDLETV------GI--PANCCKILLTTRLQQ  290 (513)
Q Consensus       227 ~~l~~~~~~~~~~-~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~--~~~~~~iivTtr~~~  290 (513)
                      -....  ...+.. ...-.+..  .+.. ++-++++|++....|....      ..  ...+..||++||+..
T Consensus       102 ~~~~~--~~LSgGe~qrv~la~--al~~-~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~  169 (192)
T cd03232         102 FSALL--RGLSVEQRKRLTIGV--ELAA-KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS  169 (192)
T ss_pred             HHHHH--hcCCHHHhHHHHHHH--HHhc-CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence            11000  012211 11222222  4444 7789999999888763321      11  112789999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.78  E-value=5.8e-05  Score=65.73  Aligned_cols=112  Identities=17%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhcc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE-EERADRLRLMFSESK  253 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~~~~~l~~  253 (513)
                      .+++|+|++|+|||||++.+.+....   ....+++.-......  ........++.... .+. +...-.+..  .+..
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~--~l~~   97 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALAR--ALLL   97 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHH--HHhc
Confidence            89999999999999999999987653   233333221111000  00011111111000 111 122222222  4444


Q ss_pred             CCeEEEEEecCCCcccccccc------c--CCCCcEEEEEeCchHHHhhc
Q 044393          254 GRKILIILDDVWKELDLETVG------I--PANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~~~~l~------~--~~~~~~iivTtr~~~v~~~~  295 (513)
                       ++-++++|++....|.....      .  ...+..++++||+.......
T Consensus        98 -~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~  146 (157)
T cd00267          98 -NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA  146 (157)
T ss_pred             -CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence             67899999999887643321      1  11257899999998776654

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00176 ftsH cell division protein; Validated

Probab=97.78  E-value=0.00027  Score=74.89  Aligned_cols=145  Identities=19%  Similarity=0.211  Sum_probs=82.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      +-+.++||+|+|||+||+.+++.....       +++++..    .+..    .+    .+.........+.   .....
T Consensus       217 ~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~f~~----~~----~g~~~~~vr~lF~---~A~~~  274 (638)
T CHL00176        217 KGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----EFVE----MF----VGVGAARVRDLFK---KAKEN  274 (638)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----HHHH----Hh----hhhhHHHHHHHHH---HHhcC
Confidence            468999999999999999999876432       2322211    1100    00    0011111122222   33345


Q ss_pred             CeEEEEEecCCCcc----------------ccccccc------CCCCcEEEEEeCchHHHhh-c----CCcceeecCCCC
Q 044393          255 RKILIILDDVWKEL----------------DLETVGI------PANCCKILLTTRLQQVCDR-M----GCDTRIKLDALD  307 (513)
Q Consensus       255 ~~~LlVLDd~~~~~----------------~~~~l~~------~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~  307 (513)
                      .+++|+|||+....                .+..+..      ...+..||.||......+. +    .....+.+...+
T Consensus       275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd  354 (638)
T CHL00176        275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPD  354 (638)
T ss_pred             CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCC
Confidence            88999999995431                0111210      1125667777776543221 1    123678888899


Q ss_pred             hHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          308 QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       308 ~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      .++-.++++.++......  .......+++.+.|..
T Consensus       355 ~~~R~~IL~~~l~~~~~~--~d~~l~~lA~~t~G~s  388 (638)
T CHL00176        355 REGRLDILKVHARNKKLS--PDVSLELIARRTPGFS  388 (638)
T ss_pred             HHHHHHHHHHHHhhcccc--hhHHHHHHHhcCCCCC
Confidence            999999998887542211  1344677888888843

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.78  E-value=1.8e-05  Score=77.84  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      |....++.+...+..+  .+++|+|++|+|||||++.+.+....
T Consensus        52 ~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p   93 (340)
T PRK13536         52 GDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSP   93 (340)
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            4334555555555666  89999999999999999999987654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.78  E-value=9e-05  Score=68.98  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+.+....
T Consensus        18 ~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~   55 (229)
T cd03254          18 VLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDP   55 (229)
T ss_pred             cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            344444444556  89999999999999999999987653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.77  E-value=9.6e-05  Score=68.74  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        26 l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         26 LTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             EeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            34444444556  8999999999999999999998764

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.77  E-value=4.2e-05  Score=69.13  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh--hhcC---CCCe---------EEEEEEcCCCCh---HHHHH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL--RQEK---IFDE---------VGIATVSQDPDI---INVQS  223 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~--~~~~---~f~~---------~~wv~~~~~~~~---~~~~~  223 (513)
                      .++.+...+.++  .+++|.|++|+|||||++.+++..  ....   .|+.         ....++.+.+..   ..+..
T Consensus        24 ~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~  101 (194)
T cd03213          24 LLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE  101 (194)
T ss_pred             ceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence            444444445556  899999999999999999999876  4321   0110         011223333221   12222


Q ss_pred             HHHHHhCCCCCCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchH
Q 044393          224 ELVKWLGWELKEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQ  290 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~  290 (513)
                      .+.-....  ...+. +...-.+..  .+.. ++-++++|++.+..|....      . . ...+..||++||+..
T Consensus       102 ~i~~~~~~--~~LS~G~~qrv~lar--al~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         102 TLMFAAKL--RGLSGGERKRVSIAL--ELVS-NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             HHHHHHHh--ccCCHHHHHHHHHHH--HHHc-CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence            22211100  01222 112222222  4444 7779999999988764322      1 1 112789999999864

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=2.8e-05  Score=73.08  Aligned_cols=38  Identities=26%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        17 il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   54 (242)
T PRK11124         17 ALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMP   54 (242)
T ss_pred             eEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            334444444556  89999999999999999999987653

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.77  E-value=5.1e-05  Score=70.83  Aligned_cols=38  Identities=32%  Similarity=0.524  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        15 ~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p   52 (232)
T cd03218          15 VVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKP   52 (232)
T ss_pred             eeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344555555566  89999999999999999999987643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=97.77  E-value=4.7e-05  Score=76.01  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=33.8

Q ss_pred             HhccCCeEEEEEecCCCccccccccc------CCCCcEEEEEeCchHHHhhcCC
Q 044393          250 SESKGRKILIILDDVWKELDLETVGI------PANCCKILLTTRLQQVCDRMGC  297 (513)
Q Consensus       250 ~l~~~~~~LlVLDd~~~~~~~~~l~~------~~~~~~iivTtr~~~v~~~~~~  297 (513)
                      .+.. ++.||.||++.+++|++.+.-      ......++|++|+++..+.+++
T Consensus       235 ~Lf~-kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT  287 (614)
T KOG0927|consen  235 ALFQ-KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCT  287 (614)
T ss_pred             HHhc-CCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhh
Confidence            4454 788999999999999777531      1112279999999877666533

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.76  E-value=2.9e-05  Score=74.25  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        16 il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   53 (271)
T PRK13638         16 VLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRP   53 (271)
T ss_pred             cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            444554445556  89999999999999999999887643

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.76  E-value=0.00069  Score=69.55  Aligned_cols=149  Identities=15%  Similarity=0.097  Sum_probs=80.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+-|.++||+|+|||.+|+.+++.....  |   +-+..+.          +.    ...-+.+.......+.   ....
T Consensus       259 pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~----------l~----~~~vGese~~l~~~f~---~A~~  316 (489)
T CHL00195        259 PRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK----------LF----GGIVGESESRMRQMIR---IAEA  316 (489)
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH----------hc----ccccChHHHHHHHHHH---HHHh
Confidence            4678999999999999999999987532  2   1111111          10    1111112222222222   2223


Q ss_pred             CCeEEEEEecCCCccc--------------ccccc----cCCCCcEEEEEeCchHHH-hhc----CCcceeecCCCChHh
Q 044393          254 GRKILIILDDVWKELD--------------LETVG----IPANCCKILLTTRLQQVC-DRM----GCDTRIKLDALDQAE  310 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~--------------~~~l~----~~~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~e  310 (513)
                      ..+++|++|+++....              +..+.    ....+.-||.||....-. ..+    .....+.+...+.++
T Consensus       317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e  396 (489)
T CHL00195        317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE  396 (489)
T ss_pred             cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence            4789999999864210              00010    011144566677654321 111    234678888889999


Q ss_pred             HHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          311 GLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       311 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      -.++|+.+................+++.+.|..-
T Consensus       397 R~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSG  430 (489)
T CHL00195        397 REKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG  430 (489)
T ss_pred             HHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCH
Confidence            9999988775322111111234567777766543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.76  E-value=0.00014  Score=67.18  Aligned_cols=37  Identities=30%  Similarity=0.526  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        21 l~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   57 (218)
T cd03266          21 VDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEP   57 (218)
T ss_pred             ecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            34444444455  89999999999999999999987643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.76  E-value=0.00014  Score=66.92  Aligned_cols=36  Identities=31%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        18 ~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~   53 (214)
T cd03292          18 DGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELP   53 (214)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3333334455  89999999999999999999987643

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.76  E-value=4.5e-05  Score=80.33  Aligned_cols=137  Identities=16%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCe-EEEEEEcCCC--------ChHHH------
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDE-VGIATVSQDP--------DIINV------  221 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~-~~wv~~~~~~--------~~~~~------  221 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.++.......   .|+. ....++++..        ++.+.      
T Consensus       333 ~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~  410 (530)
T PRK15064        333 PLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ  410 (530)
T ss_pred             eeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence            3455555445556  8999999999999999999998765321   1211 1123334332        11111      


Q ss_pred             -------HHHHHHHhCCCC-------CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccCCCCc
Q 044393          222 -------QSELVKWLGWEL-------KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------GIPANCC  280 (513)
Q Consensus       222 -------~~~i~~~l~~~~-------~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~  280 (513)
                             ...++..++...       ...+. ....-.+..  .+.. ++-+|+||++.+..|....      .... +.
T Consensus       411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~--al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~  486 (530)
T PRK15064        411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGK--LMMQ-KPNVLVMDEPTNHMDMESIESLNMALEKY-EG  486 (530)
T ss_pred             CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHH--HHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC
Confidence                   112222332210       00011 111111111  3333 6669999999998874432      1112 45


Q ss_pred             EEEEEeCchHHHhhcCCcceeec
Q 044393          281 KILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       281 ~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      .||++||+......+. .+.+.+
T Consensus       487 tvi~vsHd~~~~~~~~-d~i~~l  508 (530)
T PRK15064        487 TLIFVSHDREFVSSLA-TRIIEI  508 (530)
T ss_pred             EEEEEeCCHHHHHHhC-CEEEEE
Confidence            8999999988766553 344444

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.76  E-value=4.7e-05  Score=80.34  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+.+|  ..++|+|++|+|||||++.+.+...+
T Consensus       349 ~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p  387 (529)
T TIGR02868       349 PVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDP  387 (529)
T ss_pred             ceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3556666556667  89999999999999999999887754

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=1.1e-05  Score=79.94  Aligned_cols=146  Identities=21%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe---EE--EEEEcC-----------
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE---VG--IATVSQ-----------  214 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~---~~--wv~~~~-----------  214 (513)
                      .+.-.+|-...+..-.-.|..+  +.-+++|++|+|||||.+.+.+-.-  ..|..   +.  .+...+           
T Consensus        85 ~fdLa~G~k~LL~~a~L~L~~G--rRYGLvGrNG~GKsTLLRaia~~~v--~~f~veqE~~g~~t~~~~~~l~~D~~~~d  160 (582)
T KOG0062|consen   85 NFDLAYGGKILLNKANLTLSRG--RRYGLVGRNGIGKSTLLRAIANGQV--SGFHVEQEVRGDDTEALQSVLESDTERLD  160 (582)
T ss_pred             eeeeeecchhhhcCCceeeecc--cccceeCCCCCcHHHHHHHHHhcCc--CccCchhheeccchHHHhhhhhccHHHHH
Confidence            3444556444444333334445  8899999999999999999998211  11221   10  110000           


Q ss_pred             ----C------CChHHHHHHHHHHhCCCCCC-----CCH-HH--HHHHHHHHHHhccCCeEEEEEecCCCcccccccccC
Q 044393          215 ----D------PDIINVQSELVKWLGWELKE-----KDE-EE--RADRLRLMFSESKGRKILIILDDVWKELDLETVGIP  276 (513)
Q Consensus       215 ----~------~~~~~~~~~i~~~l~~~~~~-----~~~-~~--~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~  276 (513)
                          .      ....++...++..+|-..+.     .+. ..  +.-.|.+  .+.. ++=||.||+++|++|...+.-.
T Consensus       161 fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLAR--Alf~-~pDlLLLDEPTNhLDv~av~WL  237 (582)
T KOG0062|consen  161 FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALAR--ALFA-KPDLLLLDEPTNHLDVVAVAWL  237 (582)
T ss_pred             HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHH--HHhc-CCCEEeecCCcccchhHHHHHH
Confidence                0      01122233344444432110     000 11  1122222  4444 7779999999999997665321


Q ss_pred             CC-----CcEEEEEeCchHHHhhcCCcceeecC
Q 044393          277 AN-----CCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       277 ~~-----~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                      .+     +..+||+||+..+.+.+.+ .+|+++
T Consensus       238 e~yL~t~~~T~liVSHDr~FLn~V~t-dIIH~~  269 (582)
T KOG0062|consen  238 ENYLQTWKITSLIVSHDRNFLNTVCT-DIIHLE  269 (582)
T ss_pred             HHHHhhCCceEEEEeccHHHHHHHHH-HHHHHh
Confidence            11     5899999999988776533 334443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.75  E-value=0.00013  Score=69.89  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=27.0

Q ss_pred             HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +...+.++  .+++|+|++|+|||||++.+++....
T Consensus        26 vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p   59 (272)
T PRK15056         26 ASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRL   59 (272)
T ss_pred             eEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            33334455  89999999999999999999887643

>PRK13409 putative ATPase RIL; Provisional

Probab=97.75  E-value=0.00019  Score=75.98  Aligned_cols=130  Identities=23%  Similarity=0.290  Sum_probs=71.7

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CCeEEEEEEcCCC------ChHHHH-------------HHHH
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FDEVGIATVSQDP------DIINVQ-------------SELV  226 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~------~~~~~~-------------~~i~  226 (513)
                      +..+  .+++|+|++|+|||||++.++........   ++ .-..++++..      ++.+.+             .+++
T Consensus       362 i~~G--eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L  438 (590)
T PRK13409        362 IYEG--EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII  438 (590)
T ss_pred             ECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence            3445  89999999999999999999987754311   11 1122334432      122211             1222


Q ss_pred             HHhCCCC------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccccc------cC--C-CCcEEEEEeCchH
Q 044393          227 KWLGWEL------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETVG------IP--A-NCCKILLTTRLQQ  290 (513)
Q Consensus       227 ~~l~~~~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~--~-~~~~iivTtr~~~  290 (513)
                      +.++...      ...+..+ ..-.+..  .+.. ++-+++||++.+.+|.....      ..  . .|..||++||+..
T Consensus       439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAr--aL~~-~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~  515 (590)
T PRK13409        439 KPLQLERLLDKNVKDLSGGELQRVAIAA--CLSR-DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY  515 (590)
T ss_pred             HHCCCHHHHhCCcccCCHHHHHHHHHHH--HHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            2332210      0111111 1111222  3333 67799999999998754321      11  1 2789999999988


Q ss_pred             HHhhcCCcceeecCC
Q 044393          291 VCDRMGCDTRIKLDA  305 (513)
Q Consensus       291 v~~~~~~~~~~~l~~  305 (513)
                      .+..+. ++.+.+.+
T Consensus       516 ~~~~~a-Drvivl~~  529 (590)
T PRK13409        516 MIDYIS-DRLMVFEG  529 (590)
T ss_pred             HHHHhC-CEEEEEcC
Confidence            776653 35555543

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.75  E-value=5e-05  Score=69.01  Aligned_cols=126  Identities=23%  Similarity=0.293  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh--hhc-C--CCCe-------------EEEEEEcCCCChH--H
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL--RQE-K--IFDE-------------VGIATVSQDPDII--N  220 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~--~~~-~--~f~~-------------~~wv~~~~~~~~~--~  220 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++...  ... +  .|+.             ....++.+.+...  .
T Consensus        15 ~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (200)
T cd03217          15 ILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV   92 (200)
T ss_pred             eeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence            344444445556  899999999999999999999873  211 0  0000             0012233332211  1


Q ss_pred             HHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------c-c-CCCCcEEEEEeCchHH
Q 044393          221 VQSELVKWLGWELKEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------G-I-PANCCKILLTTRLQQV  291 (513)
Q Consensus       221 ~~~~i~~~l~~~~~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~-~-~~~~~~iivTtr~~~v  291 (513)
                      ...+++....   ...+..+ ..-.+..  .+.. ++-+++||++.+..|....      . . ...+..||++||+...
T Consensus        93 ~~~~~l~~~~---~~LS~G~~qrv~lar--al~~-~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~  166 (200)
T cd03217          93 KNADFLRYVN---EGFSGGEKKRNEILQ--LLLL-EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL  166 (200)
T ss_pred             cHHHHHhhcc---ccCCHHHHHHHHHHH--HHhc-CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            1122221111   1122222 2222222  4444 7789999999988763221      1 1 1127899999999876


Q ss_pred             Hhh
Q 044393          292 CDR  294 (513)
Q Consensus       292 ~~~  294 (513)
                      ...
T Consensus       167 ~~~  169 (200)
T cd03217         167 LDY  169 (200)
T ss_pred             HHH
Confidence            654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.75  E-value=4.1e-05  Score=70.12  Aligned_cols=114  Identities=15%  Similarity=0.219  Sum_probs=57.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh--hhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----CCCHHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL--RQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK----EKDEEERADRLRL  247 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~  247 (513)
                      .+++.|+|++|.|||||.+.+....  ...+.|.......++       .+.++...++....    ..+-......+..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~  101 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSK  101 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence            3889999999999999999987432  222222110000000       11111111111100    0111111222222


Q ss_pred             HHHhccCCeEEEEEecCCCcccccc-------cc---cCC-C-CcEEEEEeCchHHHhhc
Q 044393          248 MFSESKGRKILIILDDVWKELDLET-------VG---IPA-N-CCKILLTTRLQQVCDRM  295 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~~~~~~~~~-------l~---~~~-~-~~~iivTtr~~~v~~~~  295 (513)
                      .+.+. .++.|++||++....+...       +.   ... . +..+|+|||+.+++...
T Consensus       102 ~l~~~-~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         102 ALRLA-TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHhC-CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            22333 3789999999977654321       11   111 1 35899999998876654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.75  E-value=5.2e-05  Score=71.30  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++.
T Consensus        15 ~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        15 ILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            344444445556  89999999999999999999987

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.75  E-value=0.0016  Score=63.83  Aligned_cols=177  Identities=14%  Similarity=0.128  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCC---CeE-----EEEEEcCCCChHHHHHHHHHHh
Q 044393          159 KSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF---DEV-----GIATVSQDPDIINVQSELVKWL  229 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i~~~l  229 (513)
                      +...+++...+.++. .+.+.+.|+.|+||+|+|..++..+--....   .|-     .++.....+|+..+.-      
T Consensus         8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------   81 (334)
T PRK07993          8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------   81 (334)
T ss_pred             hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec------
Confidence            455677888887765 4678899999999999999988876321100   000     0000000111000000      


Q ss_pred             CCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch-HHHhhcC-Ccce
Q 044393          230 GWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ-QVCDRMG-CDTR  300 (513)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~-~v~~~~~-~~~~  300 (513)
                      .........++..+....+. .-..+++-++|+|+++....      +..+..|.++..+|++|.+. .+...+. -...
T Consensus        82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~  161 (334)
T PRK07993         82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL  161 (334)
T ss_pred             ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence            00001122333333222211 12235777999998866532      44445566677777777764 3444432 2257


Q ss_pred             eecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          301 IKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      +.+.+++.+++.+.+....+.   +   .+.+..++..++|.|....
T Consensus       162 ~~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~Al  202 (334)
T PRK07993        162 HYLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAAL  202 (334)
T ss_pred             ccCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHHH
Confidence            899999999999888754321   1   3446788999999997443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.75  E-value=0.00013  Score=67.48  Aligned_cols=36  Identities=31%  Similarity=0.564  Sum_probs=28.3

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        21 ~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~   56 (220)
T cd03293          21 EDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERP   56 (220)
T ss_pred             eceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3343444556  89999999999999999999987643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.74  E-value=0.00039  Score=69.92  Aligned_cols=133  Identities=21%  Similarity=0.165  Sum_probs=81.0

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK  236 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~  236 (513)
                      .+...+.++...+..... ++.|.||-++|||||++.+.......     .++++..+......-+              
T Consensus        21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l--------------   80 (398)
T COG1373          21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL--------------   80 (398)
T ss_pred             hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH--------------
Confidence            344556666666666632 99999999999999997776665443     4444433322111111              


Q ss_pred             CHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCC---CcEEEEEeCchHH-----Hhhc-CCcceeecCCCC
Q 044393          237 DEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPAN---CCKILLTTRLQQV-----CDRM-GCDTRIKLDALD  307 (513)
Q Consensus       237 ~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~---~~~iivTtr~~~v-----~~~~-~~~~~~~l~~L~  307 (513)
                           .+.+..+..+...++.+++||++....+|.......-   ..+|++|+-+...     +..+ +-...+++.|||
T Consensus        81 -----~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS  155 (398)
T COG1373          81 -----LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLS  155 (398)
T ss_pred             -----HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence                 1112221122222778999999999999877542221   1268888776443     2222 223678999999


Q ss_pred             hHhHHHH
Q 044393          308 QAEGLDL  314 (513)
Q Consensus       308 ~~e~~~l  314 (513)
                      ..|-..+
T Consensus       156 F~Efl~~  162 (398)
T COG1373         156 FREFLKL  162 (398)
T ss_pred             HHHHHhh
Confidence            9888654

>PRK08118 topology modulation protein; Reviewed

Probab=97.74  E-value=3.3e-05  Score=67.77  Aligned_cols=35  Identities=37%  Similarity=0.494  Sum_probs=28.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEE
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGI  209 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w  209 (513)
                      +.|.|+|++|+||||||+.+++..... .+|+..+|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            468999999999999999999988654 45666665

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.74  E-value=0.00012  Score=68.45  Aligned_cols=36  Identities=33%  Similarity=0.600  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        16 l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          16 LDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             ecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            34444444556  8999999999999999999998754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.74  E-value=0.0001  Score=67.75  Aligned_cols=37  Identities=30%  Similarity=0.393  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        16 l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~   52 (213)
T cd03262          16 LKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEP   52 (213)
T ss_pred             ecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            33344444455  89999999999999999999987653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.74  E-value=8.2e-05  Score=68.46  Aligned_cols=37  Identities=35%  Similarity=0.527  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        17 il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        17 ALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             eecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344444445566  8999999999999999999988764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.74  E-value=0.0001  Score=69.12  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        17 l~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         17 LHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             eeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34444444555  8999999999999999999998764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.74  E-value=7.5e-05  Score=71.47  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+.+....
T Consensus        21 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   57 (274)
T PRK13647         21 LKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLP   57 (274)
T ss_pred             eeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            44444444556  89999999999999999999987653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.73  E-value=0.00014  Score=61.51  Aligned_cols=109  Identities=22%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      ..+.|+|++|+||||+++.+++......  ..++++..+........... ...................+..  .....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~   77 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALA--LARKL   77 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHH--HHHhc
Confidence            6899999999999999999999887642  23444443333222111111 1111111111222222222222  22222


Q ss_pred             CeEEEEEecCCCccccccc--------------ccCCCCcEEEEEeCc
Q 044393          255 RKILIILDDVWKELDLETV--------------GIPANCCKILLTTRL  288 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~~l--------------~~~~~~~~iivTtr~  288 (513)
                      +..++++|++.........              .....+..+|.|+..
T Consensus        78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            3489999999876542221              111226777777774

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.73  E-value=3.5e-05  Score=73.54  Aligned_cols=35  Identities=23%  Similarity=0.544  Sum_probs=27.6

Q ss_pred             HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        42 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p   76 (269)
T cd03294          42 DVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEP   76 (269)
T ss_pred             eeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            333334455  89999999999999999999987653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.73  E-value=0.00017  Score=66.55  Aligned_cols=37  Identities=30%  Similarity=0.531  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        20 l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~   56 (218)
T cd03255          20 LKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRP   56 (218)
T ss_pred             EeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence            34444444556  89999999999999999999887653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.72  E-value=8e-05  Score=70.65  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+.+....
T Consensus        21 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~   57 (257)
T PRK10619         21 LKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKP   57 (257)
T ss_pred             EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444555  89999999999999999999987653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.72  E-value=7.1e-05  Score=70.69  Aligned_cols=37  Identities=19%  Similarity=0.376  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        18 ~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         18 VLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             eeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence            344555555566  8999999999999999999998754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.72  E-value=0.00027  Score=66.89  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        19 l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~   55 (254)
T PRK10418         19 VHGVSLTLQRG--RVLALVGGSGSGKSLTCAAALGILPA   55 (254)
T ss_pred             ecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444555  89999999999999999999987643

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.72  E-value=3.1e-05  Score=70.53  Aligned_cols=108  Identities=14%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh-hc-CCCCe----------EEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR-QE-KIFDE----------VGIATVSQDPDIINVQSELVKWLGWELKEKDEEERA  242 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~-~~-~~f~~----------~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  242 (513)
                      .+++|+|++|+|||||++.+....- .+ +.|..          ..+.......++..             ....-....
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~-------------~~s~~~~e~   96 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISD-------------GRSTFMAEL   96 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccC-------------CceeHHHHH
Confidence            7999999999999999999984332 11 11111          11111111111000             000111112


Q ss_pred             HHHHHHHHhccCCeEEEEEecCCCcccccc---c----cc--CCCCcEEEEEeCchHHHhhcC
Q 044393          243 DRLRLMFSESKGRKILIILDDVWKELDLET---V----GI--PANCCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       243 ~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~---l----~~--~~~~~~iivTtr~~~v~~~~~  296 (513)
                      ..+...+.... .+-++++|++....+...   +    ..  ...+..+|++||+.++.....
T Consensus        97 ~~l~~i~~~~~-~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~  158 (202)
T cd03243          97 LELKEILSLAT-PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPE  158 (202)
T ss_pred             HHHHHHHHhcc-CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhh
Confidence            22333334444 889999999977655321   1    11  112788999999988766543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.72  E-value=0.00015  Score=77.46  Aligned_cols=38  Identities=32%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+.++  ..++|+|++|+|||||++.+.+...+
T Consensus       358 il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p  395 (582)
T PRK11176        358 ALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDI  395 (582)
T ss_pred             cccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            555555555666  89999999999999999999988765

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.72  E-value=0.00011  Score=69.76  Aligned_cols=30  Identities=37%  Similarity=0.759  Sum_probs=25.9

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.+++....
T Consensus        47 i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p   76 (264)
T PRK13546         47 AYEG--DVIGLVGINGSGKSTLSNIIGGSLSP   76 (264)
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            3455  89999999999999999999998654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=97.70  E-value=0.00011  Score=69.38  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++.
T Consensus        22 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         22 ILKGLNLSINKG--EIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             eeecceeEEcCC--cEEEEECCCCCCHHHHHHHHcCC
Confidence            444555555566  89999999999999999999985

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.70  E-value=0.00016  Score=67.78  Aligned_cols=35  Identities=34%  Similarity=0.595  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        19 ~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          19 DNISLRIKPG--EVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             eceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            3333334455  8999999999999999999998764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.70  E-value=0.00015  Score=69.99  Aligned_cols=37  Identities=32%  Similarity=0.434  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        22 l~~vsl~i~~G--e~v~i~G~nGsGKSTLl~~l~Gl~~p   58 (288)
T PRK13643         22 LFDIDLEVKKG--SYTALIGHTGSGKSTLLQHLNGLLQP   58 (288)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            33444444556  89999999999999999999987654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.69  E-value=0.00013  Score=70.08  Aligned_cols=37  Identities=30%  Similarity=0.508  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        23 l~~v~l~i~~G--e~~~I~G~nGaGKSTLl~~l~G~~~p   59 (282)
T PRK13640         23 LNDISFSIPRG--SWTALIGHNGSGKSTISKLINGLLLP   59 (282)
T ss_pred             eeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCC
Confidence            33333334455  89999999999999999999987643

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.69  E-value=0.0002  Score=67.08  Aligned_cols=38  Identities=32%  Similarity=0.537  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        17 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   54 (239)
T cd03296          17 ALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERP   54 (239)
T ss_pred             eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444444556  89999999999999999999987643

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.69  E-value=0.00034  Score=63.79  Aligned_cols=38  Identities=26%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        20 il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~~   57 (204)
T cd03250          20 TLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELEK   57 (204)
T ss_pred             eeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence            344444445566  89999999999999999999997654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.69  E-value=7.2e-05  Score=69.32  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        37 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p   74 (224)
T cd03220          37 ALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPP   74 (224)
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            334444444455  89999999999999999999987653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.68  E-value=0.00012  Score=70.14  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        20 l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p   56 (277)
T PRK13652         20 LNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKP   56 (277)
T ss_pred             eeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            33344444455  89999999999999999999987653

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.68  E-value=0.00026  Score=65.52  Aligned_cols=26  Identities=35%  Similarity=0.553  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++....
T Consensus         7 e~~~l~G~nGsGKSTLl~~l~G~~~~   32 (223)
T TIGR03771         7 ELLGLLGPNGAGKTTLLRAILGLIPP   32 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            89999999999999999999987653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.68  E-value=0.00016  Score=67.88  Aligned_cols=37  Identities=30%  Similarity=0.473  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+......
T Consensus        19 l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~   55 (241)
T PRK10895         19 VEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPR   55 (241)
T ss_pred             EeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444556  89999999999999999999987643

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.68  E-value=0.00016  Score=67.51  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        25 l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         25 LHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             EEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34444444555  8999999999999999999998764

>PLN03073 ABC transporter F family; Provisional

Probab=97.67  E-value=4.8e-05  Score=82.13  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=30.2

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      |....++.+...+..+  ..++|+|++|+|||||++.++..
T Consensus       188 ~~~~ll~~isl~i~~G--e~~gLvG~NGsGKSTLLr~l~g~  226 (718)
T PLN03073        188 GGRDLIVDASVTLAFG--RHYGLVGRNGTGKTTFLRYMAMH  226 (718)
T ss_pred             CCCEEEECCEEEECCC--CEEEEECCCCCCHHHHHHHHcCC
Confidence            4333555555555666  89999999999999999999875

>PRK10908 cell division protein FtsE; Provisional

Probab=97.67  E-value=0.00014  Score=67.37  Aligned_cols=36  Identities=33%  Similarity=0.474  Sum_probs=28.2

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        19 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   54 (222)
T PRK10908         19 QGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERP   54 (222)
T ss_pred             eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3343344455  89999999999999999999887653

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.67  E-value=3.4e-05  Score=69.41  Aligned_cols=45  Identities=29%  Similarity=0.378  Sum_probs=36.5

Q ss_pred             cccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          154 SFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+|....++.|...+..+  ++.++.|++|.||||..+.+.+-...
T Consensus        10 K~Fg~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~   54 (300)
T COG4152          10 KSFGDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEP   54 (300)
T ss_pred             hccCceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCc
Confidence            3345556667777767777  89999999999999999999998775

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.67  E-value=8.4e-05  Score=67.26  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++++|+|++|+|||||++.+....
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            899999999999999999998755

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.67  E-value=0.00017  Score=69.52  Aligned_cols=38  Identities=32%  Similarity=0.500  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+..+  .+++|+|++|+|||||++.+++....
T Consensus        22 ~l~~vsl~i~~G--e~~~iiG~NGaGKSTLl~~l~Gl~~p   59 (287)
T PRK13641         22 GLDNISFELEEG--SFVALVGHTGSGKSTLMQHFNALLKP   59 (287)
T ss_pred             ceeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444445566  89999999999999999999987654

>PLN03073 ABC transporter F family; Provisional

Probab=97.66  E-value=8.9e-05  Score=80.10  Aligned_cols=136  Identities=16%  Similarity=0.204  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---CC-eEEEEEEcCCC----ChH-------------
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---FD-EVGIATVSQDP----DII-------------  219 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f~-~~~wv~~~~~~----~~~-------------  219 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++.......   +. .....++++..    +..             
T Consensus       524 il~~vsl~i~~G--e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~  601 (718)
T PLN03073        524 LFKNLNFGIDLD--SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPG  601 (718)
T ss_pred             eEeccEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCC
Confidence            445554444555  89999999999999999999987654210   11 01122333322    110             


Q ss_pred             ---HHHHHHHHHhCCCC-------CCCCHHHH-HHHHHHHHHhccCCeEEEEEecCCCcccccccc------cCCCCcEE
Q 044393          220 ---NVQSELVKWLGWEL-------KEKDEEER-ADRLRLMFSESKGRKILIILDDVWKELDLETVG------IPANCCKI  282 (513)
Q Consensus       220 ---~~~~~i~~~l~~~~-------~~~~~~~~-~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~i  282 (513)
                         .....++..++...       ...+..+. .-.+..  .+.. ++-+|+||++.+.+|.....      ... ++.|
T Consensus       602 ~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAr--aL~~-~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~gtv  677 (718)
T PLN03073        602 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK--ITFK-KPHILLLDEPSNHLDLDAVEALIQGLVLF-QGGV  677 (718)
T ss_pred             CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHH--HHhc-CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CCEE
Confidence               01122333333321       01111111 111121  3333 67799999999998754321      111 3489


Q ss_pred             EEEeCchHHHhhcCCcceeec
Q 044393          283 LLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       283 ivTtr~~~v~~~~~~~~~~~l  303 (513)
                      |++||+......+. ...+.+
T Consensus       678 IivSHd~~~i~~~~-drv~~l  697 (718)
T PLN03073        678 LMVSHDEHLISGSV-DELWVV  697 (718)
T ss_pred             EEEECCHHHHHHhC-CEEEEE
Confidence            99999988776543 234444

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=0.00018  Score=69.28  Aligned_cols=38  Identities=26%  Similarity=0.478  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        22 ~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~L~Gl~~p   59 (286)
T PRK13646         22 AIHDVNTEFEQG--KYYAIVGQTGSGKSTLIQNINALLKP   59 (286)
T ss_pred             ceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444444556  89999999999999999999987654

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.66  E-value=0.00025  Score=76.66  Aligned_cols=155  Identities=15%  Similarity=0.162  Sum_probs=88.8

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-C---CCeEEEEEEcCCCChHHHHHHHH
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-I---FDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      ...+.+||+.++..+...|......-+.++|++|+|||++|+.+++...... .   .++.+|..     +.    ..++
T Consensus       184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~----~~ll  254 (758)
T PRK11034        184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DI----GSLL  254 (758)
T ss_pred             CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cH----HHHh
Confidence            3456789999999999988776556677999999999999999998764321 1   13344421     11    1111


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCc----------ccccccccC---CCCcEEEEEeCchHHHh
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKE----------LDLETVGIP---ANCCKILLTTRLQQVCD  293 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~----------~~~~~l~~~---~~~~~iivTtr~~~v~~  293 (513)
                      .  +....+.........+ .  .+...++.+|++|++...          .+...+..+   .+..++|-+|..++...
T Consensus       255 a--G~~~~Ge~e~rl~~l~-~--~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~  329 (758)
T PRK11034        255 A--GTKYRGDFEKRFKALL-K--QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSN  329 (758)
T ss_pred             c--ccchhhhHHHHHHHHH-H--HHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHH
Confidence            1  1111111111122222 2  222346779999998543          112111111   12456666665443211


Q ss_pred             h-------cCCcceeecCCCChHhHHHHHHHhc
Q 044393          294 R-------MGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       294 ~-------~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      .       ..-...+.+++++.+++..++....
T Consensus       330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~  362 (758)
T PRK11034        330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK  362 (758)
T ss_pred             HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence            1       1123579999999999999998643

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.00019  Score=61.04  Aligned_cols=48  Identities=29%  Similarity=0.478  Sum_probs=37.4

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+.++|-..-+.++...+-.+  .+++|+|.+|+|||||...+..++.+
T Consensus        11 ~lsk~Yg~~~gc~~vsF~l~PG--eVLgiVGESGSGKtTLL~~is~rl~p   58 (258)
T COG4107          11 GLSKLYGPGKGCRDVSFDLYPG--EVLGIVGESGSGKTTLLKCISGRLTP   58 (258)
T ss_pred             hhhhhhCCCcCccccceeecCC--cEEEEEecCCCcHHhHHHHHhcccCC
Confidence            3444555555566777777777  89999999999999999999877654

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.66  E-value=0.00025  Score=66.94  Aligned_cols=37  Identities=27%  Similarity=0.597  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+. .+.++  .+++|+|++|+|||||++.++.....
T Consensus        16 ~l~~i~-~i~~G--e~~~IvG~nGsGKSTLlk~l~Gl~~p   52 (255)
T cd03236          16 KLHRLP-VPREG--QVLGLVGPNGIGKSTALKILAGKLKP   52 (255)
T ss_pred             hhhcCC-CCCCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            445554 34455  89999999999999999999988764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=0.00012  Score=70.25  Aligned_cols=37  Identities=30%  Similarity=0.479  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+.-.+..+  .+++|+|++|+|||||++.+++....
T Consensus        23 l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p   59 (279)
T PRK13635         23 LKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLP   59 (279)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            34444444556  89999999999999999999987654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.66  E-value=5.6e-05  Score=70.41  Aligned_cols=38  Identities=32%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        15 ~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~   52 (230)
T TIGR03410        15 ILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPV   52 (230)
T ss_pred             EecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344455455566  89999999999999999999987653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.66  E-value=9.3e-05  Score=70.42  Aligned_cols=37  Identities=30%  Similarity=0.515  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        19 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~   55 (262)
T PRK09984         19 ALHAVDLNIHHG--EMVALLGPSGSGKSTLLRHLSGLIT   55 (262)
T ss_pred             EEecceEEEcCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence            444555555566  8999999999999999999998765

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.65  E-value=0.0002  Score=69.06  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        23 L~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (290)
T PRK13634         23 LYDVNVSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLQP   59 (290)
T ss_pred             eeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            33343344556  89999999999999999999987653

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=97.65  E-value=0.00022  Score=67.02  Aligned_cols=35  Identities=26%  Similarity=0.456  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        19 ~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~   53 (242)
T TIGR03411        19 NDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTR   53 (242)
T ss_pred             eeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3333344455  8999999999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.65  E-value=0.00018  Score=66.47  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        21 l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        21 LKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             EeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34444444556  8999999999999999999988754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.65  E-value=8.5e-05  Score=69.83  Aligned_cols=37  Identities=27%  Similarity=0.496  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        17 il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        17 ALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            444454445566  8999999999999999999987764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.65  E-value=7.1e-05  Score=78.30  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        19 ~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p   56 (501)
T PRK10762         19 ALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTR   56 (501)
T ss_pred             EeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            445555455566  89999999999999999999987643

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.65  E-value=0.0002  Score=71.51  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=28.1

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        20 ~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p   55 (369)
T PRK11000         20 KDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDI   55 (369)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            3333334455  89999999999999999999987653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=97.65  E-value=0.00026  Score=70.23  Aligned_cols=38  Identities=24%  Similarity=0.497  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ++.+...+..+  .+++|+|++|+|||||.+.++......
T Consensus        21 l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~   58 (362)
T TIGR03258        21 LDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAA   58 (362)
T ss_pred             EeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            33333334455  799999999999999999999876543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.65  E-value=0.00021  Score=68.99  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        27 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p   63 (289)
T PRK13645         27 LNNTSLTFKKN--KVTCVIGTTGSGKSTMIQLTNGLIIS   63 (289)
T ss_pred             eeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34444444556  89999999999999999999887643

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.65  E-value=0.0052  Score=67.13  Aligned_cols=38  Identities=26%  Similarity=0.516  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+..|  ..++|+|++|+|||||++.+.+...+
T Consensus       472 il~~i~l~i~~G--~~vaivG~sGsGKSTL~~ll~g~~~p  509 (694)
T TIGR01846       472 VLSNLNLDIKPG--EFIGIVGPSGSGKSTLTKLLQRLYTP  509 (694)
T ss_pred             ccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            556655555666  89999999999999999999887754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=0.00033  Score=65.70  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        19 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         19 LKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             eeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34444444555  8999999999999999999998764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.65  E-value=0.0003  Score=73.74  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        26 il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p   63 (510)
T PRK15439         26 VLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPP   63 (510)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            445555555566  89999999999999999999987643

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.65  E-value=0.00017  Score=60.57  Aligned_cols=23  Identities=48%  Similarity=0.637  Sum_probs=21.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhHhh
Q 044393          177 VGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       177 i~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      |.|+|++|+||||+|+.+++...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            57999999999999999999985

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.65  E-value=0.00016  Score=69.47  Aligned_cols=36  Identities=25%  Similarity=0.509  Sum_probs=28.1

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        24 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (279)
T PRK13650         24 NDVSFHVKQG--EWLSIIGHNGSGKSTTVRLIDGLLEA   59 (279)
T ss_pred             eeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3333334455  89999999999999999999987653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=97.64  E-value=0.00064  Score=62.13  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        23 ~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          23 VLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             cccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccC
Confidence            344444444555  8999999999999999999988654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.64  E-value=0.00026  Score=67.12  Aligned_cols=37  Identities=32%  Similarity=0.591  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        22 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   58 (258)
T PRK11701         22 CRDVSFDLYPG--EVLGIVGESGSGKTTLLNALSARLAP   58 (258)
T ss_pred             eeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444556  89999999999999999999987643

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.64  E-value=9.8e-05  Score=77.07  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        18 il~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~G~~~p   55 (490)
T PRK10938         18 TLQLPSLTLNAG--DSWAFVGANGSGKSALARALAGELPL   55 (490)
T ss_pred             ecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            455555555666  89999999999999999999987643

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.64  E-value=0.00025  Score=65.93  Aligned_cols=37  Identities=38%  Similarity=0.606  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        20 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          20 ALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             eecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344444445566  8999999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.64  E-value=9.6e-05  Score=66.55  Aligned_cols=43  Identities=21%  Similarity=0.428  Sum_probs=35.5

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      |....++.+.-.+.++  .+++|+|++|+|||||.+.+....+..
T Consensus        19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~   61 (263)
T COG1127          19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPD   61 (263)
T ss_pred             CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCC
Confidence            5556667777666777  899999999999999999998887653

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.64  E-value=0.00018  Score=65.97  Aligned_cols=38  Identities=34%  Similarity=0.537  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+.+|...+..+  .+++++|++|.||||+.+.+.....+
T Consensus        39 AVqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p   76 (325)
T COG4586          39 AVQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLP   76 (325)
T ss_pred             hhheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCcccc
Confidence            344455555556  89999999999999999999877654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.63  E-value=0.00016  Score=68.70  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        28 il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         28 ALKNINLDIAKN--QVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             EeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence            445555555566  8999999999999999999997753

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.63  E-value=0.002  Score=63.33  Aligned_cols=141  Identities=14%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeEEEEEEcCCC
Q 044393          158 TKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEVGIATVSQDP  216 (513)
Q Consensus       158 r~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~  216 (513)
                      .+...+.|...+..++. +...++|+.|+||||+|..+.+..-...                    |.|. .++....  
T Consensus        11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~~~~--   87 (329)
T PRK08058         11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVAPDG--   87 (329)
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEecccc--
Confidence            67788888888887764 5669999999999999999988764321                    1111 1111100  


Q ss_pred             ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCch
Q 044393          217 DIINVQSELVKWLGWELKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQ  289 (513)
Q Consensus       217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~  289 (513)
                                       .....++..+.+..+- .-..+.+-++|+|++.....      +..+..|.+++.+|++|.+.
T Consensus        88 -----------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~  150 (329)
T PRK08058         88 -----------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK  150 (329)
T ss_pred             -----------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence                             0111222222222110 11224666899999865432      23333455577777777653


Q ss_pred             -HHHhhcC-CcceeecCCCChHhHHHHHHHh
Q 044393          290 -QVCDRMG-CDTRIKLDALDQAEGLDLLREH  318 (513)
Q Consensus       290 -~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~  318 (513)
                       .+...+. ....+++.+++.++..+.+.+.
T Consensus       151 ~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~  181 (329)
T PRK08058        151 HQILPTILSRCQVVEFRPLPPESLIQRLQEE  181 (329)
T ss_pred             HhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence             3333322 2368999999999998888753

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.63  E-value=7.1e-05  Score=68.06  Aligned_cols=38  Identities=37%  Similarity=0.516  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        16 il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~   53 (200)
T PRK13540         16 LLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNP   53 (200)
T ss_pred             EEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444444556  89999999999999999999887653

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.63  E-value=0.00018  Score=67.34  Aligned_cols=37  Identities=24%  Similarity=0.437  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p   53 (236)
T TIGR03864        17 LDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVA   53 (236)
T ss_pred             EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            33344444556  89999999999999999999987643

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10536 hypothetical protein; Provisional

Probab=97.63  E-value=0.00061  Score=63.07  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=40.5

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeE
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEV  207 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~  207 (513)
                      ...+..++......+..++.+.  ..+.++|++|+|||+||..+..+.-..+.|..+
T Consensus        53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI  107 (262)
T PRK10536         53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRI  107 (262)
T ss_pred             CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence            3444556777778888888776  699999999999999999988854322334443

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=97.63  E-value=0.00026  Score=69.99  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=28.1

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        22 ~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p   57 (343)
T PRK11153         22 NNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERP   57 (343)
T ss_pred             EeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            3333334455  89999999999999999999887653

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.63  E-value=0.00013  Score=68.27  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        20 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   56 (237)
T PRK11614         20 ALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPR   56 (237)
T ss_pred             eeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            344444445566  8999999999999999999988764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.63  E-value=0.00016  Score=66.89  Aligned_cols=38  Identities=37%  Similarity=0.605  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        17 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   54 (220)
T cd03263          17 AVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRP   54 (220)
T ss_pred             eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444445556  89999999999999999999987653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.63  E-value=0.00051  Score=64.23  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        18 ~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~   53 (236)
T cd03253          18 KDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDV   53 (236)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            3333334455  89999999999999999999987653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.62  E-value=0.00044  Score=63.96  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        19 ~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          19 VLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             cccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            444555555566  8999999999999999999988754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.62  E-value=0.00035  Score=65.06  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=24.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++....
T Consensus        13 e~~~i~G~nGsGKSTLl~~l~Gl~~p   38 (230)
T TIGR02770        13 EVLALVGESGSGKSLTCLAILGLLPP   38 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            89999999999999999999988654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.62  E-value=0.00024  Score=64.89  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        15 ~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   50 (206)
T TIGR03608        15 DDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKF   50 (206)
T ss_pred             eceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3333334455  89999999999999999999987653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.62  E-value=0.00014  Score=68.81  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        20 ~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (255)
T PRK11300         20 AVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKP   57 (255)
T ss_pred             EEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            344444445566  89999999999999999999987653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.62  E-value=0.00032  Score=64.49  Aligned_cols=29  Identities=28%  Similarity=0.587  Sum_probs=25.4

Q ss_pred             hcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          170 KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       170 ~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+  .+++|+|++|+|||||++.++.....
T Consensus        22 ~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   50 (213)
T TIGR01277        22 ADG--EIVAIMGPSGAGKSTLLNLIAGFIEP   50 (213)
T ss_pred             eCC--cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            345  89999999999999999999987654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.61  E-value=0.00012  Score=78.15  Aligned_cols=40  Identities=23%  Similarity=0.420  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...++.+.-.+.++  ..++|+|++|+|||||++.+.+...+
T Consensus       348 ~~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p  387 (588)
T PRK13657        348 RQGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDP  387 (588)
T ss_pred             CceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            33566666666667  89999999999999999999887764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=97.61  E-value=0.00018  Score=69.79  Aligned_cols=34  Identities=32%  Similarity=0.560  Sum_probs=27.1

Q ss_pred             HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +...+.++  .+++|+|++|+|||||++.+.+....
T Consensus        21 is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~   54 (301)
T TIGR03522        21 VSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPP   54 (301)
T ss_pred             eEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            33334455  89999999999999999999987653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=97.61  E-value=0.00011  Score=69.97  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        28 ~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p   65 (267)
T PRK15112         28 AVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEP   65 (267)
T ss_pred             eeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            445555555566  89999999999999999999988754

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.61  E-value=0.00043  Score=64.67  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=28.1

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        19 ~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (234)
T cd03251          19 RDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDV   54 (234)
T ss_pred             eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccC
Confidence            3333334455  89999999999999999999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.61  E-value=0.00037  Score=65.47  Aligned_cols=36  Identities=31%  Similarity=0.495  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        18 ~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   53 (242)
T cd03295          18 NNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEP   53 (242)
T ss_pred             eeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3333334455  89999999999999999999987643

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=0.00049  Score=64.79  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        18 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         18 LFDINMQIEQN--KITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence            34444444455  899999999999999999999864

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.61  E-value=5.5e-05  Score=73.40  Aligned_cols=43  Identities=33%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             cchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          156 ETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       156 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +|....++.+.-.+.++  .++++.||+|+|||||.+.++.-..+
T Consensus        15 yg~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p   57 (352)
T COG3842          15 FGDFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQP   57 (352)
T ss_pred             cCCeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444555566556666  89999999999999999999887655

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.61  E-value=0.0002  Score=67.66  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=28.2

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        17 ~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   52 (252)
T TIGR03005        17 DGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPI   52 (252)
T ss_pred             eeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3344444556  89999999999999999999987643

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.60  E-value=0.0039  Score=59.15  Aligned_cols=57  Identities=28%  Similarity=0.307  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      +..++.+...+..+  ..|.+.|++|+|||+||+.++.....     ....++.....+..+++
T Consensus         8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll   64 (262)
T TIGR02640         8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV   64 (262)
T ss_pred             HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence            45667777777777  67889999999999999999875421     23345555544444443

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.60  E-value=0.00052  Score=63.72  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        29 ~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   66 (226)
T cd03248          29 VLQDVSFTLHPG--EVTALVGPSGSGKSTVVALLENFYQP   66 (226)
T ss_pred             cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            444444444556  89999999999999999999987643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.60  E-value=0.00011  Score=77.83  Aligned_cols=38  Identities=26%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        20 il~~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~~p   57 (552)
T TIGR03719        20 ILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDKE   57 (552)
T ss_pred             eecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            445555555566  89999999999999999999987654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.60  E-value=0.0001  Score=75.02  Aligned_cols=39  Identities=33%  Similarity=0.592  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  .+++|+|.+|+|||||++.+.+-..+
T Consensus       305 ~Av~~VSf~l~~G--E~lglVGeSGsGKSTlar~i~gL~~P  343 (539)
T COG1123         305 KAVDDVSFDLREG--ETLGLVGESGSGKSTLARILAGLLPP  343 (539)
T ss_pred             eeeeeeeeEecCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3455555556666  89999999999999999999988765

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=97.60  E-value=0.00034  Score=68.85  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=29.3

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++...+.
T Consensus        21 L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p   57 (343)
T TIGR02314        21 LNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERP   57 (343)
T ss_pred             EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44444445556  89999999999999999999887654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.60  E-value=0.00015  Score=68.58  Aligned_cols=37  Identities=27%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        22 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         22 ALNNINIKILKN--SITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             eecceeeEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence            455555555666  8999999999999999999998654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.59  E-value=0.00011  Score=70.26  Aligned_cols=37  Identities=38%  Similarity=0.604  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        18 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (274)
T PRK13644         18 LENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRP   54 (274)
T ss_pred             eeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34444444556  89999999999999999999987653

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=97.59  E-value=0.00058  Score=63.96  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=28.1

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        20 ~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~   55 (238)
T cd03249          20 KGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDP   55 (238)
T ss_pred             eceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence            3333334455  89999999999999999999987643

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.59  E-value=0.00043  Score=63.49  Aligned_cols=30  Identities=23%  Similarity=0.474  Sum_probs=25.6

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.+++....
T Consensus        21 i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~   50 (211)
T cd03298          21 FAQG--EITAIVGPSGSGKSTLLNLIAGFETP   50 (211)
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3445  89999999999999999999987653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.59  E-value=0.00022  Score=68.62  Aligned_cols=36  Identities=17%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        23 l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         23 LFDVNLTIEDG--SYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             eeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            33343334455  8999999999999999999988754

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.59  E-value=0.00045  Score=72.78  Aligned_cols=53  Identities=21%  Similarity=0.322  Sum_probs=43.0

Q ss_pred             CccccccccchhHHHHHHHHHHhcC-----CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          148 IPRFFSSFETTKSACNQITEALKKG-----STKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .|.....+++.++.++.+..++...     ..+++.|+|++|+||||+++.+++....
T Consensus        79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602        79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4566677888999999998888643     2357999999999999999999987653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.58  E-value=0.0002  Score=65.70  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=22.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +++|+|++|+|||||++.+++...
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            899999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.58  E-value=0.00035  Score=65.58  Aligned_cols=36  Identities=25%  Similarity=0.504  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          17 LKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             EecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            34444444556  8999999999999999999988764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.58  E-value=0.00014  Score=77.43  Aligned_cols=38  Identities=26%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+.++  ..++|+|++|+|||||++.+.+....
T Consensus       350 ~l~~i~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~  387 (585)
T TIGR01192       350 GVFDVSFEAKAG--QTVAIVGPTGAGKTTLINLLQRVYDP  387 (585)
T ss_pred             cccceeEEEcCC--CEEEEECCCCCCHHHHHHHHccCCCC
Confidence            455555555566  89999999999999999999877654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=97.58  E-value=0.00022  Score=66.78  Aligned_cols=35  Identities=26%  Similarity=0.500  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        17 ~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        17 DDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             eeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3333334455  8999999999999999999998754

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.58  E-value=0.00031  Score=76.70  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+.+|  ..++|+|++|+|||||++.+.+....
T Consensus       495 ~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p  533 (711)
T TIGR00958       495 PVLKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQP  533 (711)
T ss_pred             ccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            3556666656667  89999999999999999999888765

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.57  E-value=0.00023  Score=67.92  Aligned_cols=36  Identities=33%  Similarity=0.703  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        24 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (269)
T PRK11831         24 DNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAP   59 (269)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3333334455  89999999999999999999987643

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.57  E-value=0.00037  Score=71.30  Aligned_cols=37  Identities=32%  Similarity=0.591  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        40 L~nVSfsI~~G--EivgIiGpNGSGKSTLLkiLaGLl~P   76 (549)
T PRK13545         40 LNNISFEVPEG--EIVGIIGLNGSGKSTLSNLIAGVTMP   76 (549)
T ss_pred             EeeeEEEEeCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            33444444555  89999999999999999999988754

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.56  E-value=0.00015  Score=76.76  Aligned_cols=39  Identities=31%  Similarity=0.487  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus       338 ~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p  376 (556)
T PRK11819        338 LLIDDLSFSLPPG--GIVGIIGPNGAGKSTLFKMITGQEQP  376 (556)
T ss_pred             eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3556665555666  89999999999999999999987653

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=97.56  E-value=0.00036  Score=68.63  Aligned_cols=37  Identities=30%  Similarity=0.531  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+.+...
T Consensus        22 ~l~~vsl~i~~G--e~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         22 AVDRVSMTLTEG--EIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             EEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHccCC
Confidence            344444445566  8999999999999999999998764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.56  E-value=0.00053  Score=63.34  Aligned_cols=37  Identities=27%  Similarity=0.492  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+.....
T Consensus        19 ~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          19 ALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            344444444556  8999999999999999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.56  E-value=0.00024  Score=67.86  Aligned_cols=37  Identities=24%  Similarity=0.510  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        25 l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p   61 (271)
T PRK13632         25 LKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKP   61 (271)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44444444555  89999999999999999999987653

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=0.00016  Score=68.46  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        19 ~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         19 VIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence            445555555566  8999999999999999999998754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.55  E-value=0.00041  Score=73.80  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+.++  ..++|+|++|+|||||++.+.+...+
T Consensus       354 ~il~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p  392 (574)
T PRK11160        354 PVLKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDP  392 (574)
T ss_pred             cceecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3566666666667  89999999999999999999987754

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.55  E-value=0.00033  Score=68.46  Aligned_cols=38  Identities=29%  Similarity=0.423  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        41 ~L~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~L~Gl~~p   78 (320)
T PRK13631         41 ALNNISYTFEKN--KIYFIIGNSGSGKSTLVTHFNGLIKS   78 (320)
T ss_pred             ceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            455555555566  89999999999999999999987653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.55  E-value=9.5e-05  Score=78.26  Aligned_cols=39  Identities=28%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus       336 ~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p  374 (552)
T TIGR03719       336 LLIDDLSFKLPPG--GIVGVIGPNGAGKSTLFRMITGQEQP  374 (552)
T ss_pred             eeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            3555555555566  89999999999999999999987653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.55  E-value=0.00014  Score=66.15  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        16 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          16 FSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             eccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34444444556  8999999999999999999988764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.54  E-value=0.00017  Score=66.41  Aligned_cols=27  Identities=26%  Similarity=0.569  Sum_probs=24.2

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .. .+++|+|++|+|||||++.+.+...
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            45 8999999999999999999988765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.54  E-value=0.0017  Score=56.65  Aligned_cols=132  Identities=21%  Similarity=0.276  Sum_probs=72.4

Q ss_pred             chhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCC------------------CeEEEEEEcCC--
Q 044393          157 TTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF------------------DEVGIATVSQD--  215 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f------------------~~~~wv~~~~~--  215 (513)
                      |.+...+.|...+.++.. +.+.++|+.|+||+|+|..+++..-.....                  ....|+.-...  
T Consensus         1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~   80 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK   80 (162)
T ss_dssp             S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred             CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence            456778888888888764 568999999999999999998876433211                  12233322211  


Q ss_pred             -CChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCc
Q 044393          216 -PDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRL  288 (513)
Q Consensus       216 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~  288 (513)
                       ... +..+++...+...                  -..++.-++|+|++.....      +..+..|..++.+|++|++
T Consensus        81 ~i~i-~~ir~i~~~~~~~------------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~  141 (162)
T PF13177_consen   81 SIKI-DQIREIIEFLSLS------------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN  141 (162)
T ss_dssp             SBSH-HHHHHHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred             hhhH-HHHHHHHHHHHHH------------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence             111 2222333332221                  1124677999999976532      3334455568888888887


Q ss_pred             hH-HHhhc-CCcceeecCCCC
Q 044393          289 QQ-VCDRM-GCDTRIKLDALD  307 (513)
Q Consensus       289 ~~-v~~~~-~~~~~~~l~~L~  307 (513)
                      .. +...+ +-...+.+.++|
T Consensus       142 ~~~il~TI~SRc~~i~~~~ls  162 (162)
T PF13177_consen  142 PSKILPTIRSRCQVIRFRPLS  162 (162)
T ss_dssp             GGGS-HHHHTTSEEEEE----
T ss_pred             hHHChHHHHhhceEEecCCCC
Confidence            54 33332 222456666653

...

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.54  E-value=0.00031  Score=63.54  Aligned_cols=26  Identities=19%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++....
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~   52 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGIMQP   52 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            79999999999999999999987653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.54  E-value=0.00032  Score=67.01  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        25 l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~   61 (269)
T PRK13648         25 LKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKV   61 (269)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34444444555  89999999999999999999987653

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.54  E-value=0.00056  Score=65.26  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        28 il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         28 AVKNVFCDIPRG--KVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EEcceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence            445554445566  8999999999999999999988643

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.54  E-value=6.9e-05  Score=74.14  Aligned_cols=30  Identities=27%  Similarity=0.574  Sum_probs=25.9

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.+++....
T Consensus        16 i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p   45 (363)
T TIGR01186        16 IAKG--EIFVIMGLSGSGKSTTVRMLNRLIEP   45 (363)
T ss_pred             EcCC--CEEEEECCCCChHHHHHHHHhCCCCC
Confidence            4455  89999999999999999999987754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=97.53  E-value=0.00083  Score=68.56  Aligned_cols=188  Identities=19%  Similarity=0.220  Sum_probs=110.2

Q ss_pred             ccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      |..+..++|.+.....|...+..+. .+--...|+-|+||||+|+.++..+--...       ........-...+.|..
T Consensus        12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~   84 (515)
T COG2812          12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE   84 (515)
T ss_pred             cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence            4566777899999999999998874 345678999999999999999887643211       00111111112222222


Q ss_pred             HhCCC------CCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCc--cc----ccccccCCCCcEEEEEeCch-HHHh
Q 044393          228 WLGWE------LKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKE--LD----LETVGIPANCCKILLTTRLQ-QVCD  293 (513)
Q Consensus       228 ~l~~~------~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~--~~----~~~l~~~~~~~~iivTtr~~-~v~~  293 (513)
                      .-...      ......++......+.... ..++.-+.|+|++.-.  ..    +..+..|..+...|+.|.+. .+..
T Consensus        85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~  164 (515)
T COG2812          85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN  164 (515)
T ss_pred             CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence            10000      0111233333333332222 2345569999998543  22    33344455566666666553 3333


Q ss_pred             h-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          294 R-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       294 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      . ++....+.++.++.++-...+...+..+.-..+ ++...-|++..+|..-
T Consensus       165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~R  215 (515)
T COG2812         165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLR  215 (515)
T ss_pred             hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChh
Confidence            2 233378999999999999998888865443333 5666777777777443

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.53  E-value=0.00031  Score=67.32  Aligned_cols=36  Identities=36%  Similarity=0.478  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        19 ~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~   54 (275)
T PRK13639         19 KGINFKAEKG--EMVALLGPNGAGKSTLFLHFNGILKP   54 (275)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3333334455  89999999999999999999887643

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.53  E-value=0.00057  Score=67.69  Aligned_cols=30  Identities=40%  Similarity=0.614  Sum_probs=25.7

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.++.....
T Consensus        25 i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p   54 (353)
T PRK10851         25 IPSG--QMVALLGPSGSGKTTLLRIIAGLEHQ   54 (353)
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3455  89999999999999999999987654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.53  E-value=0.00017  Score=75.70  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        20 il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~   56 (510)
T PRK09700         20 ALKSVNLTVYPG--EIHALLGENGAGKSTLMKVLSGIHE   56 (510)
T ss_pred             EeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCcC
Confidence            445555555566  8999999999999999999988764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.53  E-value=0.00011  Score=69.63  Aligned_cols=41  Identities=27%  Similarity=0.457  Sum_probs=31.1

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      |....+..+...+..+  .+++|+|++|+|||||++.+.....
T Consensus        21 ~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~   61 (257)
T PRK14246         21 NDKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIE   61 (257)
T ss_pred             CCceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3333445555555566  8999999999999999999997754

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.016  Score=57.38  Aligned_cols=164  Identities=15%  Similarity=0.196  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHhcCC---------ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHh
Q 044393          159 KSACNQITEALKKGS---------TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWL  229 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~---------~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l  229 (513)
                      +..+++|...+...+         -+--.++||+|.||||++.++++.+.    |+..- ..++...+            
T Consensus       211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~------------  273 (457)
T KOG0743|consen  211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKL------------  273 (457)
T ss_pred             HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccC------------
Confidence            456666766665432         24467999999999999999999987    43211 11111111            


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccc---------------------------cccccCCCCcEE
Q 044393          230 GWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDL---------------------------ETVGIPANCCKI  282 (513)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~---------------------------~~l~~~~~~~~i  282 (513)
                              ..+    |+.++.... .+.+||+.|++...++                           +.+...+++-||
T Consensus       274 --------n~d----Lr~LL~~t~-~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERI  340 (457)
T KOG0743|consen  274 --------DSD----LRHLLLATP-NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERI  340 (457)
T ss_pred             --------cHH----HHHHHHhCC-CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceE
Confidence                    111    222222233 6667777777543221                           111122223354


Q ss_pred             -EEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh-cC
Q 044393          283 -LLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL-TG  355 (513)
Q Consensus       283 -ivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l-~~  355 (513)
                       |+||...+     +.+.-.....+.+.--+.+....|++...+.+..    ..++.+|.+...|.-+.=..++..| .+
T Consensus       341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~lm~~  416 (457)
T KOG0743|consen  341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEELMKN  416 (457)
T ss_pred             EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence             45666432     2221123467889999999999999999875431    3456666666677766666666655 44


Q ss_pred             C
Q 044393          356 R  356 (513)
Q Consensus       356 ~  356 (513)
                      +
T Consensus       417 ~  417 (457)
T KOG0743|consen  417 K  417 (457)
T ss_pred             c
Confidence            4

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.53  E-value=0.00025  Score=68.00  Aligned_cols=37  Identities=27%  Similarity=0.515  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        23 l~~v~l~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (277)
T PRK13642         23 LNGVSFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEE   59 (277)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            33444444556  89999999999999999999877653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.53  E-value=0.00019  Score=71.17  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=28.3

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        21 ~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p   56 (356)
T PRK11650         21 KGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERI   56 (356)
T ss_pred             eeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence            3344444455  89999999999999999999987654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=97.53  E-value=0.00037  Score=69.01  Aligned_cols=30  Identities=47%  Similarity=0.675  Sum_probs=25.8

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||.+.++.....
T Consensus        27 i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p   56 (353)
T TIGR03265        27 VKKG--EFVCLLGPSGCGKTTLLRIIAGLERQ   56 (353)
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence            3445  89999999999999999999987654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.52  E-value=0.00014  Score=68.67  Aligned_cols=118  Identities=17%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             hcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCC--------CCCCCCHHHH
Q 044393          170 KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGW--------ELKEKDEEER  241 (513)
Q Consensus       170 ~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--------~~~~~~~~~~  241 (513)
                      ..++..-++|+|++|+|||||++.++......   ...+++. .+.....+...++......        ..+..+....
T Consensus       107 ~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~-g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k  182 (270)
T TIGR02858       107 RNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLR-GKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK  182 (270)
T ss_pred             hCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEEC-CEEeecchhHHHHHHHhcccccccccccccccccchH
Confidence            34445689999999999999999999887653   1122211 0000000111222222111        0000111111


Q ss_pred             HHHHHHHHHhccCCeEEEEEecCCCcccccccccC-CCCcEEEEEeCchHHHh
Q 044393          242 ADRLRLMFSESKGRKILIILDDVWKELDLETVGIP-ANCCKILLTTRLQQVCD  293 (513)
Q Consensus       242 ~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~-~~~~~iivTtr~~~v~~  293 (513)
                      ...+..  ....-.+-++++|++.....+..+... ..|..||+|||+..+..
T Consensus       183 ~~~~~~--~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~  233 (270)
T TIGR02858       183 AEGMMM--LIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVED  233 (270)
T ss_pred             HHHHHH--HHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHH
Confidence            112222  222237789999999877655544322 23889999999876643

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.52  E-value=0.00052  Score=64.93  Aligned_cols=37  Identities=30%  Similarity=0.585  Sum_probs=29.1

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        19 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   55 (253)
T TIGR02323        19 CRDVSFDLYPG--EVLGIVGESGSGKSTLLGCLAGRLAP   55 (253)
T ss_pred             eecceEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444445566  89999999999999999999887643

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.52  E-value=0.00045  Score=69.35  Aligned_cols=37  Identities=32%  Similarity=0.588  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||.+.+......
T Consensus        19 L~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p   55 (402)
T PRK09536         19 LDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTP   55 (402)
T ss_pred             EEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCC
Confidence            34444444556  89999999999999999999987643

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.52  E-value=0.00018  Score=75.43  Aligned_cols=38  Identities=29%  Similarity=0.507  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        19 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   56 (506)
T PRK13549         19 KALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYP   56 (506)
T ss_pred             EeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3455555555666  8999999999999999999998765

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=97.52  E-value=0.00041  Score=68.85  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++....
T Consensus        25 e~~~l~G~nGsGKSTLl~~iaGl~~p   50 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAISGLTRP   50 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            79999999999999999999987653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.52  E-value=0.00044  Score=69.37  Aligned_cols=26  Identities=23%  Similarity=0.563  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+.+....
T Consensus        55 ei~~LvG~NGsGKSTLLr~I~Gl~~p   80 (400)
T PRK10070         55 EIFVIMGLSGSGKSTMVRLLNRLIEP   80 (400)
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCC
Confidence            89999999999999999999987654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.51  E-value=0.00027  Score=69.82  Aligned_cols=37  Identities=32%  Similarity=0.538  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        22 l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p   58 (351)
T PRK11432         22 IDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKP   58 (351)
T ss_pred             EeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence            34444444555  89999999999999999999987754

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.51  E-value=0.00023  Score=67.53  Aligned_cols=38  Identities=26%  Similarity=0.522  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        17 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p   54 (258)
T PRK13548         17 LLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSP   54 (258)
T ss_pred             eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444445556  89999999999999999999987643

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.51  E-value=0.001  Score=65.79  Aligned_cols=148  Identities=18%  Similarity=0.191  Sum_probs=87.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      ...+.|+|+.|.|||.|++.+++.....  ......++++.    ......++..+..        ...+..++  ..  
T Consensus       113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~s----e~f~~~~v~a~~~--------~~~~~Fk~--~y--  174 (408)
T COG0593         113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTS----EDFTNDFVKALRD--------NEMEKFKE--KY--  174 (408)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccH----HHHHHHHHHHHHh--------hhHHHHHH--hh--
Confidence            5799999999999999999999998765  33223333332    2333333333221        11112222  11  


Q ss_pred             CCeEEEEEecCCCccc---cc-ccccC-----CCCcEEEEEeCc---------hHHHhhcCCcceeecCCCChHhHHHHH
Q 044393          254 GRKILIILDDVWKELD---LE-TVGIP-----ANCCKILLTTRL---------QQVCDRMGCDTRIKLDALDQAEGLDLL  315 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~---~~-~l~~~-----~~~~~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf  315 (513)
                       .-=++++||++....   ++ .+...     ..|..||+|++.         +.+...+...-.+.+.+.+.+....++
T Consensus       175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL  253 (408)
T COG0593         175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL  253 (408)
T ss_pred             -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence             223899999865322   11 11111     126689999975         234455566678999999999999999


Q ss_pred             HHhcCCCCCCCchHHHHHHHHHHhCC
Q 044393          316 REHAGIDVADTTLTDVSKRVADECKG  341 (513)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~~~~G  341 (513)
                      .+++......- .+++..-|++....
T Consensus       254 ~kka~~~~~~i-~~ev~~~la~~~~~  278 (408)
T COG0593         254 RKKAEDRGIEI-PDEVLEFLAKRLDR  278 (408)
T ss_pred             HHHHHhcCCCC-CHHHHHHHHHHhhc
Confidence            98775332211 13445555554443

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.51  E-value=0.00063  Score=61.89  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.+...+.++  .+++|+|++|+|||||++.+.....
T Consensus        24 ~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          24 KDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             eeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence            3333334455  8999999999999999999998865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=97.50  E-value=0.0005  Score=68.53  Aligned_cols=37  Identities=22%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++.....
T Consensus        30 l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p   66 (375)
T PRK09452         30 ISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETP   66 (375)
T ss_pred             EeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            33343344455  89999999999999999999987654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.50  E-value=0.0003  Score=74.29  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+.++  ..++|+|++|+|||||++.+.+...+
T Consensus       336 ~il~~i~l~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~  374 (529)
T TIGR02857       336 PALRPVSFTVPPG--ERVALVGPSGAGKSTLLNLLLGFVDP  374 (529)
T ss_pred             ccccceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3566666556666  89999999999999999999887764

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.50  E-value=0.00044  Score=66.60  Aligned_cols=37  Identities=30%  Similarity=0.569  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        23 l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p   59 (287)
T PRK13637         23 LDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKP   59 (287)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            34444444556  89999999999999999999987653

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.50  E-value=0.0004  Score=64.74  Aligned_cols=30  Identities=30%  Similarity=0.583  Sum_probs=25.3

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.++.....
T Consensus        22 i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~   51 (232)
T PRK10771         22 VERG--ERVAILGPSGAGKSTLLNLIAGFLTP   51 (232)
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3445  89999999999999999999887543

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.50  E-value=0.00019  Score=67.89  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++..
T Consensus        21 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         21 ALHDISLEFEQN--QVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eecceeEEEeCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            445555555566  899999999999999999999753

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.50  E-value=0.00081  Score=64.13  Aligned_cols=36  Identities=14%  Similarity=0.248  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        35 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         35 LFDVDLDIPEK--TVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             EEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            33343344556  8999999999999999999998653

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.49  E-value=0.00076  Score=64.94  Aligned_cols=35  Identities=17%  Similarity=0.358  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++..
T Consensus        54 il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         54 AVKKVNADILSK--YVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcc
Confidence            344444444556  89999999999999999999985

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.49  E-value=0.00044  Score=75.69  Aligned_cols=39  Identities=26%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+..|  ..++|+|++|+|||||++.+.+...+
T Consensus       488 ~iL~~isl~i~~G--~~vaIvG~SGsGKSTLlklL~gl~~p  526 (708)
T TIGR01193       488 NILSDISLTIKMN--SKTTIVGMSGSGKSTLAKLLVGFFQA  526 (708)
T ss_pred             cceeceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            3455555555666  89999999999999999999887654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=97.49  E-value=0.00031  Score=70.12  Aligned_cols=36  Identities=25%  Similarity=0.504  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++.-...
T Consensus        36 ~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p   71 (377)
T PRK11607         36 DDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQP   71 (377)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            3333334455  89999999999999999999987654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.49  E-value=0.00026  Score=77.29  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+.+|  ..++|+|++|+|||||++.+.+...+
T Consensus       479 ~vL~~i~l~i~~G--~~iaIvG~sGsGKSTLlklL~gl~~p  517 (694)
T TIGR03375       479 PALDNVSLTIRPG--EKVAIIGRIGSGKSTLLKLLLGLYQP  517 (694)
T ss_pred             cceeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3556666556667  89999999999999999999887654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.49  E-value=0.00056  Score=71.67  Aligned_cols=36  Identities=28%  Similarity=0.476  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++....
T Consensus       279 l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~Gl~~  314 (510)
T PRK15439        279 FRNISLEVRAG--EILGLAGVVGAGRTELAETLYGLRP  314 (510)
T ss_pred             ccceeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            34444444455  8999999999999999999988754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=97.48  E-value=0.00018  Score=71.51  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.....
T Consensus        24 ei~~l~G~nGsGKSTLl~~iaGl~~p   49 (354)
T TIGR02142        24 GVTAIFGRSGSGKTTLIRLIAGLTRP   49 (354)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            89999999999999999999987653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=97.48  E-value=0.00042  Score=68.00  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        37 l~~vsl~i~~G--e~~~lvG~sGsGKSTLlk~i~Gl~~p   73 (331)
T PRK15079         37 VDGVTLRLYEG--ETLGVVGESGCGKSTFARAIIGLVKA   73 (331)
T ss_pred             EeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence            33444444555  89999999999999999999887643

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.48  E-value=9.6e-05  Score=67.05  Aligned_cols=113  Identities=12%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh--cCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCC----CH-HHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ--EKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEK----DE-EERADRLRL  247 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~-~~~~~~l~~  247 (513)
                      +++.|.|++|.||||+++.++...--  -+.|     +.  .......+...+...++......    .- .+.. .+..
T Consensus        30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vp--a~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~-~~~~  101 (204)
T cd03282          30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VP--AEYATLPIFNRLLSRLSNDDSMERNLSTFASEMS-ETAY  101 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cc--hhhcCccChhheeEecCCccccchhhhHHHHHHH-HHHH
Confidence            89999999999999999988754321  1111     11  00111122233333332221100    00 1112 2333


Q ss_pred             HHHhccCCeEEEEEecCCCccccc---c----cc--cCCCCcEEEEEeCchHHHhhcC
Q 044393          248 MFSESKGRKILIILDDVWKELDLE---T----VG--IPANCCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~~~~~~~~---~----l~--~~~~~~~iivTtr~~~v~~~~~  296 (513)
                      .+.+.. ++-|+++|++....+..   .    +.  ....+..+|++||+.+++..+.
T Consensus       102 il~~~~-~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~  158 (204)
T cd03282         102 ILDYAD-GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG  158 (204)
T ss_pred             HHHhcC-CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence            334444 77899999995543221   1    11  1112889999999988877654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.48  E-value=0.00041  Score=60.47  Aligned_cols=39  Identities=23%  Similarity=0.280  Sum_probs=29.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP  216 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~  216 (513)
                      ++.|+|++|+||||++..++......  -..++|+......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~   39 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI   39 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence            36899999999999999999887652  3456666655443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.48  E-value=0.00028  Score=73.90  Aligned_cols=38  Identities=24%  Similarity=0.513  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus       274 ~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~  311 (500)
T TIGR02633       274 KRVDDVSFSLRRG--EILGVAGLVGAGRTELVQALFGAYP  311 (500)
T ss_pred             cccccceeEEeCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence            3555665555666  8999999999999999999998764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.48  E-value=0.00027  Score=64.98  Aligned_cols=36  Identities=36%  Similarity=0.380  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV  212 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~  212 (513)
                      -.++|+|+.|+|||||+..+.......  |..+.+++-
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~   49 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP   49 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence            478999999999999999998877654  776665543

This is thought to be an ATPase involved in viral DNA packaging [].

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.48  E-value=0.00059  Score=61.68  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+++|+|++|+|||||++.++.-.
T Consensus        23 g~~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          23 GLTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            388999999999999999987543

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.48  E-value=0.0086  Score=54.89  Aligned_cols=52  Identities=21%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             ccccccchhHHHHHHHHH----HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC
Q 044393          151 FFSSFETTKSACNQITEA----LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK  202 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~  202 (513)
                      .....+|-+...+.|...    +......-+.++|..|+|||+|++.+.+....++
T Consensus        25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G   80 (249)
T PF05673_consen   25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG   80 (249)
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence            344556666665555543    3444456788999999999999999999887763

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.48  E-value=0.00018  Score=67.81  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+.....
T Consensus        16 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        16 ALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             eecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence            344444445566  8999999999999999999987764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.48  E-value=0.00093  Score=63.63  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        26 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         26 LLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             EEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            455555555566  8999999999999999999998764

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.47  E-value=0.00024  Score=77.72  Aligned_cols=39  Identities=31%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+..|  ..++|+|++|+|||||++.+.+...+
T Consensus       493 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p  531 (710)
T TIGR03796       493 PLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQP  531 (710)
T ss_pred             CcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3566665555666  89999999999999999999887754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.47  E-value=0.00085  Score=71.39  Aligned_cols=38  Identities=32%  Similarity=0.553  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+.++  ..++|+|++|+|||||++.+.+...+
T Consensus       330 ~l~~i~~~i~~G--~~~~ivG~sGsGKSTLl~ll~g~~~p  367 (569)
T PRK10789        330 ALENVNFTLKPG--QMLGICGPTGSGKSTLLSLIQRHFDV  367 (569)
T ss_pred             cccCeeEEECCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            455555556666  89999999999999999999887654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00024  Score=69.01  Aligned_cols=49  Identities=29%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             CeEEEEEecCCCcccccccccCCC-----CcEEEEEeCchHHHhhcCCcceeecC
Q 044393          255 RKILIILDDVWKELDLETVGIPAN-----CCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~~l~~~~~-----~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                      .+.||.||++.+++|+..+.-..+     ...++|+||+..+.+.+++ .+|+|.
T Consensus       430 EPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCt-dIIHLD  483 (807)
T KOG0066|consen  430 EPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCT-DIIHLD  483 (807)
T ss_pred             CceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHH-HHhhhh
Confidence            345999999999999988754333     5689999999877766533 445553

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.00018  Score=71.56  Aligned_cols=122  Identities=23%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeE----EEEEEcC-CCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHH--
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEV----GIATVSQ-DPDIINVQSELVKWLGWELKEKDEEERADRLRL--  247 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~----~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~--  247 (513)
                      ..++++|++|.||||+.+.+..+..+...+..+    -..+..| ..+..+..-+-+..+....++...++....+..  
T Consensus       391 sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~G  470 (582)
T KOG0062|consen  391 SRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFG  470 (582)
T ss_pred             hhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcC
Confidence            689999999999999999999988743222111    0111111 111112211222222122222222222111111  


Q ss_pred             ---------HHHhccC-------------CeEEEEEecCCCcccccccccCCC-----CcEEEEEeCchHHHhhcC
Q 044393          248 ---------MFSESKG-------------RKILIILDDVWKELDLETVGIPAN-----CCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       248 ---------~~~l~~~-------------~~~LlVLDd~~~~~~~~~l~~~~~-----~~~iivTtr~~~v~~~~~  296 (513)
                               +-.|.+|             ++-|||||+++|++|.+.+.....     ++-||++||+.++.....
T Consensus       471 l~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c  546 (582)
T KOG0062|consen  471 LSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLC  546 (582)
T ss_pred             CCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcC
Confidence                     0012222             556999999999999777643322     777888999988876653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.46  E-value=0.00014  Score=66.05  Aligned_cols=35  Identities=31%  Similarity=0.574  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        17 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        17 EGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             eeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3333344455  8999999999999999999998764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.46  E-value=0.00014  Score=66.13  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVG  195 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~  195 (513)
                      ++++|+|++|+|||||.+.+.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            689999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.45  E-value=0.00027  Score=74.75  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+.++  ..++|+|++|+|||||++.+.+...+
T Consensus       338 ~l~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~~  375 (547)
T PRK10522        338 SVGPINLTIKRG--ELLFLIGGNGSGKSTLAMLLTGLYQP  375 (547)
T ss_pred             EEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            455555555666  89999999999999999999887653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.00025  Score=68.17  Aligned_cols=37  Identities=32%  Similarity=0.477  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        21 ~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~   57 (283)
T PRK13636         21 ALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILK   57 (283)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            444444455566  8999999999999999999998764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00025  Score=74.06  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        13 il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~   49 (491)
T PRK10982         13 ALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQ   49 (491)
T ss_pred             eeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            344454445566  8999999999999999999988764

>PRK13409 putative ATPase RIL; Provisional

Probab=97.45  E-value=0.0004  Score=73.62  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+..+. .+..+  .+++|+|++|+|||||++.+.+...+
T Consensus        89 ~L~~l~-~i~~G--ev~gLvG~NGaGKSTLlkiL~G~l~p  125 (590)
T PRK13409         89 KLYGLP-IPKEG--KVTGILGPNGIGKTTAVKILSGELIP  125 (590)
T ss_pred             eEecCC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCccC
Confidence            455554 44555  89999999999999999999887653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.0003  Score=67.54  Aligned_cols=38  Identities=32%  Similarity=0.490  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        25 vl~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~   62 (280)
T PRK13633         25 ALDDVNLEVKKG--EFLVILGRNGSGKSTIAKHMNALLIP   62 (280)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444444556  89999999999999999999887653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.45  E-value=0.0002  Score=75.35  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        15 ~l~~is~~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269        15 VLKNISFTIEEG--EVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             eeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhcc
Confidence            445555555566  899999999999999999999874

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.00011  Score=65.89  Aligned_cols=42  Identities=24%  Similarity=0.429  Sum_probs=32.7

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +....++.+...+.++  ..|+|+|++|+|||||.+.+......
T Consensus        15 ~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~   56 (258)
T COG3638          15 GGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDP   56 (258)
T ss_pred             CCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCC
Confidence            4444556666666667  89999999999999999999885544

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.44  E-value=0.00039  Score=74.44  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+.-.+.+|  ..++|+|++|+|||||++.+.+..
T Consensus       365 vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        365 LAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC
Confidence            455555445566  899999999999999999998877

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.44  E-value=0.0004  Score=72.88  Aligned_cols=37  Identities=24%  Similarity=0.426  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus       278 ~l~~isl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~  314 (510)
T PRK09700        278 KVRDISFSVCRG--EILGFAGLVGSGRTELMNCLFGVDK  314 (510)
T ss_pred             cccceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCc
Confidence            345554444555  8999999999999999999988654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.44  E-value=0.00077  Score=70.55  Aligned_cols=36  Identities=36%  Similarity=0.643  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus       268 l~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~G~~~  303 (501)
T PRK10762        268 VNDVSFTLRKG--EILGVSGLMGAGRTELMKVLYGALP  303 (501)
T ss_pred             cccceEEEcCC--cEEEEecCCCCCHHHHHHHHhCCCC
Confidence            34444344455  8999999999999999999987754

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.44  E-value=0.001  Score=63.73  Aligned_cols=38  Identities=29%  Similarity=0.498  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        52 vL~~vs~~i~~G--e~~~liG~NGsGKSTLl~~I~Gl~~p   89 (282)
T cd03291          52 VLKNINLKIEKG--EMLAITGSTGSGKTSLLMLILGELEP   89 (282)
T ss_pred             ceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444444555  89999999999999999999987654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=97.44  E-value=0.0004  Score=65.82  Aligned_cols=38  Identities=29%  Similarity=0.532  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        16 il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   53 (256)
T TIGR03873        16 IVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRP   53 (256)
T ss_pred             EEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            344444444556  89999999999999999999987653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.43  E-value=0.00022  Score=74.70  Aligned_cols=37  Identities=35%  Similarity=0.534  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        16 il~~isl~i~~G--e~~~liG~nGsGKSTLl~~i~G~~~   52 (500)
T TIGR02633        16 ALDGIDLEVRPG--ECVGLCGENGAGKSTLMKILSGVYP   52 (500)
T ss_pred             eecceEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            445555555566  8999999999999999999998764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.43  E-value=0.00021  Score=67.54  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        19 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~   55 (252)
T PRK14272         19 AVKNVNLDVQRG--TVNALIGPSGCGKTTFLRAINRMHD   55 (252)
T ss_pred             eeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence            445554445566  8999999999999999999998753

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.00018  Score=63.54  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+..+  .+++|+||+|.|||||.+.+..+...
T Consensus        15 ~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p   53 (259)
T COG4559          15 RLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSP   53 (259)
T ss_pred             eeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCC
Confidence            3455555555666  89999999999999999999998874

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=97.42  E-value=0.00027  Score=67.30  Aligned_cols=38  Identities=21%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        22 ~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   59 (265)
T PRK10253         22 VAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTP   59 (265)
T ss_pred             EeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            455555555566  89999999999999999999987653

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=97.42  E-value=0.00075  Score=72.81  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus       466 ~il~~isl~i~~G--e~~~IvG~nGsGKSTLl~lL~Gl~~~  504 (659)
T TIGR00954       466 VLIESLSFEVPSG--NHLLICGPNGCGKSSLFRILGELWPV  504 (659)
T ss_pred             eeeecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3455555555566  89999999999999999999987654

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.00036  Score=70.95  Aligned_cols=136  Identities=21%  Similarity=0.200  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc-----------------CCCCeEEEEEEcCCCCh----
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE-----------------KIFDEVGIATVSQDPDI----  218 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-----------------~~f~~~~wv~~~~~~~~----  218 (513)
                      ..+..+...+..+  +.++|+|++|+|||||+..+.+-....                 ..+..+.|+  +|.+-+    
T Consensus       335 ~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v--~Q~p~lf~gT  410 (559)
T COG4988         335 PALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV--SQNPYLFAGT  410 (559)
T ss_pred             cccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee--CCCCcccccc
Confidence            4556666666677  899999999999999999998877631                 112224454  333311    


Q ss_pred             -------------HHHHHHHHHHhCC-----C-----------CCCCCHHHHHH-HHHHHHHhccCCeEEEEEecCCCcc
Q 044393          219 -------------INVQSELVKWLGW-----E-----------LKEKDEEERAD-RLRLMFSESKGRKILIILDDVWKEL  268 (513)
Q Consensus       219 -------------~~~~~~i~~~l~~-----~-----------~~~~~~~~~~~-~l~~~~~l~~~~~~LlVLDd~~~~~  268 (513)
                                   .+-..+.+++.+.     .           ....+..+.+. .+.+  .+.. ++-++++|+++.+.
T Consensus       411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR--All~-~~~l~llDEpTA~L  487 (559)
T COG4988         411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR--ALLS-PASLLLLDEPTAHL  487 (559)
T ss_pred             HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH--HhcC-CCCEEEecCCccCC
Confidence                         1112222222211     0           00112222222 2222  4554 78899999999998


Q ss_pred             ccccc-------ccCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393          269 DLETV-------GIPANCCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       269 ~~~~l-------~~~~~~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                      |.+.-       .....+..+|+.||....+..+.  .++.++
T Consensus       488 D~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D--~I~vld  528 (559)
T COG4988         488 DAETEQIILQALQELAKQKTVLVITHRLEDAADAD--RIVVLD  528 (559)
T ss_pred             CHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCC--EEEEec
Confidence            86542       12223788889999877666543  444443

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.42  E-value=0.00077  Score=66.08  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+.+...
T Consensus        22 ~l~~vsl~i~~G--e~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         22 AVDRISYSVKQG--EVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             EEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence            344455555566  8999999999999999999998764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=97.41  E-value=0.00092  Score=63.30  Aligned_cols=37  Identities=35%  Similarity=0.510  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        17 il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   53 (255)
T PRK11231         17 ILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             EEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            344444444555  8999999999999999999988654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=97.41  E-value=0.0011  Score=61.82  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.+++....
T Consensus        15 il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~   52 (232)
T cd03300          15 ALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             eeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444445566  89999999999999999999988754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.41  E-value=0.00093  Score=70.31  Aligned_cols=37  Identities=35%  Similarity=0.671  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus       299 il~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~Gl~~  335 (520)
T TIGR03269       299 AVDNVSLEVKEG--EIFGIVGTSGAGKTTLSKIIAGVLE  335 (520)
T ss_pred             EEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            445555555566  8999999999999999999988754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00074  Score=64.06  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+.....
T Consensus        27 il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~   63 (258)
T PRK14268         27 ALKNVSMQIPKN--SVTALIGPSGCGKSTFIRCLNRMND   63 (258)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            344444444556  8999999999999999999997653

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.0002  Score=62.37  Aligned_cols=44  Identities=25%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             cchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          156 ETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       156 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      +|.+..++.+.-.+.++  .+.+|+||+|.|||||...+.+-.+..
T Consensus        11 y~~~~vl~~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~~d   54 (252)
T COG4604          11 YGTKVVLDDVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLKKD   54 (252)
T ss_pred             hCCEEeeccceeeecCC--ceeEEECCCCccHHHHHHHHHHhcccc
Confidence            34444445554445555  899999999999999999998877654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.0009  Score=63.79  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        35 il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         35 AIKGIDMQFEKN--KITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             eEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhccC
Confidence            344444444555  8999999999999999999998763

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00092  Score=65.00  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        60 iL~~is~~i~~G--e~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         60 ALKGVSMDIPEK--SVTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence            344444444555  899999999999999999999875

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00041  Score=65.51  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+.+..
T Consensus        20 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         20 LNDINLPIYEN--KITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             eeceeEEEcCC--CEEEEECCCCCCHHHHHHHHHhcc
Confidence            34443334455  899999999999999999999864

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00035  Score=73.06  Aligned_cols=36  Identities=33%  Similarity=0.594  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus       269 l~~isl~i~~G--e~~~iiG~NGsGKSTLlk~l~G~~~  304 (501)
T PRK11288        269 REPISFSVRAG--EIVGLFGLVGAGRSELMKLLYGATR  304 (501)
T ss_pred             ccceeEEEeCC--cEEEEEcCCCCCHHHHHHHHcCCCc
Confidence            34444444455  8999999999999999999987754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00023  Score=68.17  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        35 ~l~~vs~~i~~G--e~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         35 ALVDVHLKIPAK--KIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence            455555555666  899999999999999999999654

>PRK07261 topology modulation protein; Provisional

Probab=97.40  E-value=0.00058  Score=60.25  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=25.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEE
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGI  209 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w  209 (513)
                      .|.|+|++|+||||||+.+....... -+.+...|
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence            58999999999999999998775432 23344444

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.40  E-value=0.0004  Score=72.77  Aligned_cols=37  Identities=24%  Similarity=0.548  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus       277 vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~  313 (506)
T PRK13549        277 RVDDVSFSLRRG--EILGIAGLVGAGRTELVQCLFGAYP  313 (506)
T ss_pred             cccceeeEEcCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence            455555555566  8999999999999999999998754

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=97.39  E-value=0.00012  Score=79.62  Aligned_cols=176  Identities=17%  Similarity=0.217  Sum_probs=90.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh--hhcCCCC-----------eEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL--RQEKIFD-----------EVGIATVSQDPDIINVQSELVKWLGWELKEKDEEE  240 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~--~~~~~f~-----------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~  240 (513)
                      .+++.|+||++.||||+++.+.-..  ...+.|-           ..++..++...++...+.++..            .
T Consensus       327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~------------~  394 (782)
T PRK00409        327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSG------------H  394 (782)
T ss_pred             ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHH------------H
Confidence            4789999999999999999886442  1111110           1122223322222211111111            1


Q ss_pred             HHHHHHHHHHhccCCeEEEEEecCCCcccccc---c----c--cCCCCcEEEEEeCchHHHhhcCCccee---ecCCCCh
Q 044393          241 RADRLRLMFSESKGRKILIILDDVWKELDLET---V----G--IPANCCKILLTTRLQQVCDRMGCDTRI---KLDALDQ  308 (513)
Q Consensus       241 ~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~---l----~--~~~~~~~iivTtr~~~v~~~~~~~~~~---~l~~L~~  308 (513)
                      .. .+..++... ..+.|++||++....+...   +    .  ....|+.+|+|||...+.........+   .+. ++.
T Consensus       395 m~-~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~  471 (782)
T PRK00409        395 MT-NIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FDE  471 (782)
T ss_pred             HH-HHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec
Confidence            11 111111222 3778999999977655321   1    1  112288999999998776543322111   111 111


Q ss_pred             HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhh
Q 044393          309 AEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQN  370 (513)
Q Consensus       309 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~  370 (513)
                      +...-.++-..|.  +.   ...|-.|++++ |+|-.+..-|.-+..........++..|..
T Consensus       472 ~~l~~~Ykl~~G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~  527 (782)
T PRK00409        472 ETLRPTYRLLIGI--PG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE  527 (782)
T ss_pred             CcCcEEEEEeeCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            1100001111111  11   34577788777 888888888877765555566666666654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.39  E-value=0.0049  Score=67.55  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      ..-+.++|++|+|||+||+.+++.....  |     +.+...        +++.    ..-+.+...... +..  ....
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~--------~l~~----~~vGese~~i~~-~f~--~A~~  544 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP--------EILS----KWVGESEKAIRE-IFR--KARQ  544 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH--------HHhh----cccCcHHHHHHH-HHH--HHHh
Confidence            3568999999999999999999987532  2     222211        1111    111122222222 222  2333


Q ss_pred             CCeEEEEEecCCCccc--------------ccccc---c---CCCCcEEEEEeCchHHHhh--c---CCcceeecCCCCh
Q 044393          254 GRKILIILDDVWKELD--------------LETVG---I---PANCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQ  308 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~--------------~~~l~---~---~~~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~  308 (513)
                      ..+++|++|+++....              ...+.   .   ...+..||.||......+.  +   .....+.+...+.
T Consensus       545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~  624 (733)
T TIGR01243       545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE  624 (733)
T ss_pred             cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence            4789999999853210              11111   1   1125567777766543321  1   2346788888999


Q ss_pred             HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          309 AEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       309 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ++-.++|+.........+.  .....+++.|.|.--
T Consensus       625 ~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~sg  658 (733)
T TIGR01243       625 EARKEIFKIHTRSMPLAED--VDLEELAEMTEGYTG  658 (733)
T ss_pred             HHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCCH
Confidence            9999999876543221111  124667888887653

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=97.39  E-value=0.00084  Score=64.05  Aligned_cols=37  Identities=35%  Similarity=0.513  Sum_probs=29.1

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        28 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   64 (268)
T PRK10419         28 LNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESP   64 (268)
T ss_pred             EeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444445566  89999999999999999999887543

>TIGR00763 lon ATP-dependent protease La

Probab=97.39  E-value=0.0049  Score=67.82  Aligned_cols=46  Identities=33%  Similarity=0.359  Sum_probs=35.2

Q ss_pred             ccchhHHHHHHHHHHh------cCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          155 FETTKSACNQITEALK------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|.+...+.+..++.      ....+++.++||+|+|||++|+.+++....
T Consensus       322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~  373 (775)
T TIGR00763       322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR  373 (775)
T ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4577777777776552      113368999999999999999999998753

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.39  E-value=0.00097  Score=70.59  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+.++  ..++|+|++|+|||||++.+.+...+
T Consensus       332 ~~l~~~~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~  370 (544)
T TIGR01842       332 PTLRGISFRLQAG--EALAIIGPSGSGKSTLARLIVGIWPP  370 (544)
T ss_pred             cccccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3455555555666  89999999999999999999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.00024  Score=67.66  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        25 il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         25 AVKNVWLDIPKN--QITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             EeecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhhh
Confidence            445555555566  899999999999999999999653

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=97.39  E-value=0.0021  Score=59.23  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.++....
T Consensus        17 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~   52 (218)
T cd03290          17 LSNINIRIPTG--QLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence            33443334455  8999999999999999999998764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.38  E-value=0.00032  Score=66.19  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        18 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         18 ALKSINLPIPAR--QVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             eeecceEEecCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            344444445566  8999999999999999999988654

>PRK08116 hypothetical protein; Validated

Probab=97.38  E-value=0.00034  Score=66.45  Aligned_cols=98  Identities=23%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKG  254 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~  254 (513)
                      .-+.++|++|+|||.||..+++.+..+  ...+++++      ..+++..+...+.... .....+   .+ .  .+.  
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-~~~~~~---~~-~--~l~--  177 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-KEDENE---II-R--SLV--  177 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-cccHHH---HH-H--Hhc--
Confidence            468999999999999999999998754  23445554      3344555544433211 111111   11 1  222  


Q ss_pred             CeEEEEEecCCC--cccccc-----ccc--CCCCcEEEEEeCch
Q 044393          255 RKILIILDDVWK--ELDLET-----VGI--PANCCKILLTTRLQ  289 (513)
Q Consensus       255 ~~~LlVLDd~~~--~~~~~~-----l~~--~~~~~~iivTtr~~  289 (513)
                      .-=||||||+..  ..+|..     +..  ...+..+|+||...
T Consensus       178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        178 NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            223899999943  222221     111  11266788888753

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.38  E-value=0.0022  Score=60.75  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        37 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   72 (257)
T cd03288          37 LKHVKAYIKPG--QKVGICGRTGSGKSSLSLAFFRMVD   72 (257)
T ss_pred             eeEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccC
Confidence            33333334455  8999999999999999999988754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=97.38  E-value=0.00057  Score=66.98  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+.+...
T Consensus        31 l~~vsl~i~~G--e~~~IvG~sGsGKSTLl~~l~gl~~   66 (327)
T PRK11308         31 LDGVSFTLERG--KTLAVVGESGCGKSTLARLLTMIET   66 (327)
T ss_pred             EeeeEEEECCC--CEEEEECCCCCcHHHHHHHHHcCCC
Confidence            44444445556  8999999999999999999988764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.38  E-value=0.00086  Score=70.02  Aligned_cols=37  Identities=22%  Similarity=0.392  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++...+
T Consensus       263 ~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~  299 (491)
T PRK10982        263 SIRDVSFDLHKG--EILGIAGLVGAKRTDIVETLFGIRE  299 (491)
T ss_pred             ccceeeEEEeCC--cEEEEecCCCCCHHHHHHHHcCCCc
Confidence            344444444555  8999999999999999999987654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.38  E-value=0.0011  Score=59.70  Aligned_cols=86  Identities=24%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-CChHHHHHHHHHHhCCCCC----CCCHHHHH-HHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-PDIINVQSELVKWLGWELK----EKDEEERA-DRLRL  247 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~-~~l~~  247 (513)
                      +++|.++|+.|+||||.+.+++.....+  -..+..++.... ....+.++..++.++.+..    ..++.... ..+..
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~   78 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK   78 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence            3789999999999999999998888765  344556665433 2455677888888887632    12233322 22332


Q ss_pred             HHHhccCCeEEEEEecC
Q 044393          248 MFSESKGRKILIILDDV  264 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~  264 (513)
                         ....+.=++++|-+
T Consensus        79 ---~~~~~~D~vlIDT~   92 (196)
T PF00448_consen   79 ---FRKKGYDLVLIDTA   92 (196)
T ss_dssp             ---HHHTTSSEEEEEE-
T ss_pred             ---HhhcCCCEEEEecC
Confidence               22223348888876

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.00065  Score=68.31  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             cccchhH-HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          154 SFETTKS-ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       154 ~~~gr~~-~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      -.+|.++ .++.+...+..|  ..|+|+|.+|+||||+.+.+..-..
T Consensus       359 f~y~~k~~iL~gvsf~I~kG--ekVaIvG~nGsGKSTilr~LlrF~d  403 (591)
T KOG0057|consen  359 FSYGPKRKVLKGVSFTIPKG--EKVAIVGSNGSGKSTILRLLLRFFD  403 (591)
T ss_pred             EEeCCCCceecceeEEecCC--CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3455555 777777777777  8999999999999999999987655

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.37  E-value=0.0013  Score=56.18  Aligned_cols=119  Identities=21%  Similarity=0.259  Sum_probs=68.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC-------------------CC--CeEEEEEEc-----C--------------
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK-------------------IF--DEVGIATVS-----Q--------------  214 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f--~~~~wv~~~-----~--------------  214 (513)
                      ..|+|+|++|+|||||...++.-.....                   .|  ..+-+|.-|     .              
T Consensus        37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~  116 (228)
T COG4181          37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR  116 (228)
T ss_pred             ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence            7899999999999999998876443210                   11  111222111     0              


Q ss_pred             ---CCChHHHHHHHHHHhCCCCC------C-CCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCC
Q 044393          215 ---DPDIINVQSELVKWLGWELK------E-KDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPAN  278 (513)
Q Consensus       215 ---~~~~~~~~~~i~~~l~~~~~------~-~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~  278 (513)
                         ..+.....+..+.+++....      + ..-++..-.+..  .+. ..+-+|+-|+++-.+|      +..+.+..+
T Consensus       117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR--Afa-~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln  193 (228)
T COG4181         117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR--AFA-GRPDVLFADEPTGNLDRATGDKIADLLFALN  193 (228)
T ss_pred             CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHH--Hhc-CCCCEEeccCCCCCcchhHHHHHHHHHHHHh
Confidence               12333444555666554311      1 111222223332  343 4888999999977654      333333333


Q ss_pred             ---CcEEEEEeCchHHHhhcC
Q 044393          279 ---CCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       279 ---~~~iivTtr~~~v~~~~~  296 (513)
                         |...+++||++.++..+.
T Consensus       194 re~G~TlVlVTHD~~LA~Rc~  214 (228)
T COG4181         194 RERGTTLVLVTHDPQLAARCD  214 (228)
T ss_pred             hhcCceEEEEeCCHHHHHhhh
Confidence               999999999999987653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.37  E-value=0.00053  Score=74.77  Aligned_cols=39  Identities=21%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+.+|  ..++|+|++|+|||||++.+.+-..+
T Consensus       467 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p  505 (686)
T TIGR03797       467 LILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETP  505 (686)
T ss_pred             cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3556665556667  89999999999999999999887765

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.00067  Score=59.13  Aligned_cols=38  Identities=26%  Similarity=0.463  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+.++  ..+++.|++|+|||||.+.++.-...
T Consensus        20 ~le~vsL~ia~g--e~vv~lGpSGcGKTTLLnl~AGf~~P   57 (259)
T COG4525          20 ALEDVSLTIASG--ELVVVLGPSGCGKTTLLNLIAGFVTP   57 (259)
T ss_pred             hhhccceeecCC--CEEEEEcCCCccHHHHHHHHhcCcCc
Confidence            455555555666  89999999999999999999887654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.0018  Score=61.40  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        29 ~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         29 KNINLSIPEN--EVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             EeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3333334455  8999999999999999999987653

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=97.36  E-value=0.00078  Score=66.14  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+.+....
T Consensus        31 ~l~~vsl~i~~G--e~~~ivG~sGsGKSTL~~~l~Gl~~p   68 (330)
T PRK09473         31 AVNDLNFSLRAG--ETLGIVGESGSGKSQTAFALMGLLAA   68 (330)
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCC
Confidence            344444445566  89999999999999999999987643

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=97.36  E-value=0.00092  Score=63.76  Aligned_cols=36  Identities=33%  Similarity=0.423  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        20 l~~isl~I~~G--e~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          20 LENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             eeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC
Confidence            44444445566  8999999999999999999988764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=97.36  E-value=0.00064  Score=63.49  Aligned_cols=31  Identities=19%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+..+  .+++|+|++|+|||||++.++.....
T Consensus        21 ~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p   51 (235)
T cd03299          21 EVERG--DYFVILGPTGSGKSVLLETIAGFIKP   51 (235)
T ss_pred             EEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            33455  89999999999999999999887554

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.36  E-value=0.00067  Score=71.51  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        24 ~l~~isl~i~~G--e~~~iiG~nGsGKSTLl~~i~G~~~   60 (529)
T PRK15134         24 VVNDVSLQIEAG--ETLALVGESGSGKSVTALSILRLLP   60 (529)
T ss_pred             eeeceEEEEeCC--CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            455555555666  8999999999999999999998765

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.0026  Score=66.39  Aligned_cols=38  Identities=24%  Similarity=0.416  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..|  .++++|||+|.||||+|..+-+-..+
T Consensus       483 Vlk~lsfti~pG--e~vALVGPSGsGKSTiasLL~rfY~P  520 (716)
T KOG0058|consen  483 VLKNLSFTIRPG--EVVALVGPSGSGKSTIASLLLRFYDP  520 (716)
T ss_pred             hhcCceeeeCCC--CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            778888888888  89999999999999999998776654

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.36  E-value=0.00012  Score=65.60  Aligned_cols=41  Identities=15%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             CeEEEEEecCCCccccc-------ccc--cCC-CCcEEEEEeCchHHHhhc
Q 044393          255 RKILIILDDVWKELDLE-------TVG--IPA-NCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~-------~l~--~~~-~~~~iivTtr~~~v~~~~  295 (513)
                      ++-|+++|++....+..       .+.  ... .++.+|++||..++....
T Consensus        78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~  128 (185)
T smart00534       78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA  128 (185)
T ss_pred             CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence            78899999997765432       111  112 378899999998765543

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00032  Score=67.22  Aligned_cols=39  Identities=23%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ...++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        34 ~~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         34 KTVLDQVSMGFPAR--AVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             EEEeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence            33455555555666  8999999999999999999998754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.0013  Score=62.20  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++.
T Consensus        21 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         21 ALYDITISIPKN--RVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             eeeeeEEEECCC--cEEEEECCCCCCHHHHHHHHhcc
Confidence            344444444555  89999999999999999999864

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.35  E-value=0.00058  Score=63.40  Aligned_cols=36  Identities=25%  Similarity=0.500  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+.+...
T Consensus        23 l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          23 LNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             ccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccC
Confidence            34443344555  8999999999999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.00097  Score=63.15  Aligned_cols=37  Identities=38%  Similarity=0.578  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|.+|+||||+++.+..-+.
T Consensus        20 av~~vs~~i~~G--E~lgiVGESGsGKS~~~~aim~llp   56 (316)
T COG0444          20 AVDGVSFELKKG--EILGIVGESGSGKSVLAKAIMGLLP   56 (316)
T ss_pred             EEeceeEEEcCC--cEEEEEcCCCCCHHHHHHHHHhccC
Confidence            344455555566  8999999999999999999998775

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.35  E-value=0.00062  Score=60.38  Aligned_cols=35  Identities=31%  Similarity=0.311  Sum_probs=26.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT  211 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~  211 (513)
                      .-+.++|+.|+|||.||..+.+..-.. .+ .+.|+.
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~~-g~-~v~f~~   82 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIRK-GY-SVLFIT   82 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhccC-Cc-ceeEee
Confidence            679999999999999999999887653 22 345554

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.00036  Score=66.64  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+++..
T Consensus        35 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         35 RAVNDISMDIEKH--AVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             eeeeceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcc
Confidence            3455555555566  899999999999999999998753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.0012  Score=70.80  Aligned_cols=37  Identities=24%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus        31 ~l~~is~~v~~G--e~~~lvG~nGsGKSTLl~~l~Gll~   67 (623)
T PRK10261         31 AVRNLSFSLQRG--ETLAIVGESGSGKSVTALALMRLLE   67 (623)
T ss_pred             EEEeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence            455555555666  8999999999999999999998764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.34  E-value=0.00031  Score=63.67  Aligned_cols=110  Identities=10%  Similarity=0.093  Sum_probs=59.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII-NVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      ..|.|+|++|+||||++..+.+.....  ....++. +..+.... .....+..+-..   +.........++.  .+..
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~--aLr~   73 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV---GLDTLSFENALKA--ALRQ   73 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc---CCCccCHHHHHHH--HhcC
Confidence            478999999999999999888776533  2222222 22211100 000011111000   1111223344444  4444


Q ss_pred             CCeEEEEEecCCCcccccccc-cCCCCcEEEEEeCchHHHh
Q 044393          254 GRKILIILDDVWKELDLETVG-IPANCCKILLTTRLQQVCD  293 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~~~~l~-~~~~~~~iivTtr~~~v~~  293 (513)
                       .+-++++|++.+........ ....|..++.|+|..+...
T Consensus        74 -~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~  113 (198)
T cd01131          74 -DPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAK  113 (198)
T ss_pred             -CcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHH
Confidence             56699999998766544432 2223777999999776543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.0013  Score=62.12  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        19 ~l~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         19 ALHGISLDFEEK--ELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccc
Confidence            334444444555  8999999999999999999998753

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.00036  Score=66.27  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.++  .+++|+|++|+|||||++.++.....
T Consensus        22 il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (261)
T PRK14258         22 ILEGVSMEIYQS--KVTAIIGPSGCGKSTFLKCLNRMNEL   59 (261)
T ss_pred             EeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCC
Confidence            344454445566  89999999999999999999987653

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.33  E-value=0.0014  Score=62.65  Aligned_cols=37  Identities=22%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        39 il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         39 ALKNINLDIHEN--EVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            344444444555  8999999999999999999998754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.33  E-value=0.00035  Score=73.61  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus       301 il~~isl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~  336 (529)
T PRK15134        301 VVKNISFTLRPG--ETLGLVGESGSGKSTTGLALLRLI  336 (529)
T ss_pred             eeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhCcC
Confidence            456666666666  899999999999999999999865

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.33  E-value=0.00063  Score=59.46  Aligned_cols=105  Identities=20%  Similarity=0.250  Sum_probs=55.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC-----------CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK-----------IFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERAD  243 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~-----------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  243 (513)
                      +++.|+|++|.||||+++.+.-..-...           .+....+.. .  +        +....+.+   ....++. 
T Consensus        22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~--~--------i~~~~~lS---~G~~~~~-   86 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA-E--L--------IFTRLQLS---GGEKELS-   86 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE-E--E--------ehheeecc---ccHHHHH-
Confidence            6999999999999999998754443221           111111110 0  0        11001111   1112222 


Q ss_pred             HHHHHHHh-ccCCeEEEEEecCCCccccccc-------ccC-CCCcEEEEEeCchHHHhh
Q 044393          244 RLRLMFSE-SKGRKILIILDDVWKELDLETV-------GIP-ANCCKILLTTRLQQVCDR  294 (513)
Q Consensus       244 ~l~~~~~l-~~~~~~LlVLDd~~~~~~~~~l-------~~~-~~~~~iivTtr~~~v~~~  294 (513)
                      .+...+.. .-+++-++++|++....+...-       ... ..++.+|+|||+......
T Consensus        87 ~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~  146 (162)
T cd03227          87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL  146 (162)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence            22221111 1136789999999877653321       110 116899999999887654

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00069  Score=63.46  Aligned_cols=36  Identities=28%  Similarity=0.589  Sum_probs=27.4

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+.-.+..+  .+.+|+|.+|.|||||.+.+..-.++
T Consensus        23 ~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~P   58 (339)
T COG1135          23 DDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLERP   58 (339)
T ss_pred             ccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCCC
Confidence            3333334455  89999999999999999998765554

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.33  E-value=0.0013  Score=62.15  Aligned_cols=35  Identities=14%  Similarity=0.347  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        20 l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         20 VKDVSMDFPEN--SVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhcc
Confidence            34444444555  899999999999999999999875

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.33  E-value=0.0011  Score=70.81  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+.++  ..++|+|++|+|||||++.+.+....
T Consensus       347 il~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~~  384 (571)
T TIGR02203       347 ALDSISLVIEPG--ETVALVGRSGSGKSTLVNLIPRFYEP  384 (571)
T ss_pred             cccCeeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            455555555566  89999999999999999999887754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PLN03211 ABC transporter G-25; Provisional

Probab=97.32  E-value=0.0008  Score=72.29  Aligned_cols=38  Identities=24%  Similarity=0.447  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        82 ~iL~~vs~~i~~G--e~~aI~GpnGaGKSTLL~iLaG~~~  119 (659)
T PLN03211         82 TILNGVTGMASPG--EILAVLGPSGSGKSTLLNALAGRIQ  119 (659)
T ss_pred             eeeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3444444445556  8999999999999999999998764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.32  E-value=0.0011  Score=69.44  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        19 il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   55 (501)
T PRK11288         19 ALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQ   55 (501)
T ss_pred             EEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344444445556  8999999999999999999988754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=97.31  E-value=0.001  Score=63.37  Aligned_cols=38  Identities=29%  Similarity=0.522  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++....
T Consensus        26 il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   63 (265)
T TIGR02769        26 VLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKP   63 (265)
T ss_pred             EeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344455555566  89999999999999999999887643

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.31  E-value=0.00028  Score=71.91  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  .+++|+|.+|+||||++..+.+-...
T Consensus        23 ~~v~~vsf~v~~G--E~lgIvGESGsGKSt~a~~i~gll~~   61 (539)
T COG1123          23 PAVRDVSFEVEPG--EILGIVGESGSGKSTLALALMGLLPE   61 (539)
T ss_pred             eeeecceEEecCC--cEEEEEcCCCCCHHHHHHHHhccCCC
Confidence            3455666666677  89999999999999999999887654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.31  E-value=0.0008  Score=57.17  Aligned_cols=38  Identities=29%  Similarity=0.556  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+..+...+..|  ..++|+||+|+|||||.+.++.-...
T Consensus        18 il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp   55 (223)
T COG4619          18 ILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISP   55 (223)
T ss_pred             eecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCC
Confidence            334444445556  79999999999999999999887654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.30  E-value=0.00024  Score=68.31  Aligned_cols=38  Identities=16%  Similarity=0.368  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..++.+...+..+  .+++|+|++|+|||||++.+.....
T Consensus        53 ~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~   90 (285)
T PRK14254         53 QALDDVSMDIPEN--QVTAMIGPSGCGKSTFLRCINRMND   90 (285)
T ss_pred             eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence            3455555555566  8999999999999999999987653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.30  E-value=0.0015  Score=61.78  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+......
T Consensus        20 l~~~s~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~   56 (251)
T PRK14249         20 LKNINMDFPER--QITAIIGPSGCGKSTLLRALNRMNDI   56 (251)
T ss_pred             ecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCc
Confidence            34444444556  89999999999999999999887653

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.30  E-value=0.00039  Score=63.87  Aligned_cols=107  Identities=15%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH-hhhc-CCCC----------eEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ-LRQE-KIFD----------EVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERA  242 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~-~~~~-~~f~----------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  242 (513)
                      +++.|.|++|.||||+.+.+... ...+ +.|.          ..++..+....++..-...             -..-.
T Consensus        32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~St-------------F~~e~   98 (222)
T cd03287          32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMST-------------FMVEL   98 (222)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccch-------------HHHHH
Confidence            78999999999999999999873 3222 1111          0122222222221111111             11112


Q ss_pred             HHHHHHHHhccCCeEEEEEecCCCcc---cccc----cc---cCCCCcEEEEEeCchHHHhhc
Q 044393          243 DRLRLMFSESKGRKILIILDDVWKEL---DLET----VG---IPANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       243 ~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~----l~---~~~~~~~iivTtr~~~v~~~~  295 (513)
                      ..+..++.... ++.|++||++....   +-..    +.   ....++.+|++||+..++...
T Consensus        99 ~~~~~il~~~~-~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~  160 (222)
T cd03287          99 SETSHILSNCT-SRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL  160 (222)
T ss_pred             HHHHHHHHhCC-CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence            22333333333 78999999984332   2111    11   111378999999998876543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.30  E-value=0.0014  Score=61.97  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=26.8

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      +.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        22 ~~is~~i~~G--e~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         22 FDINLDIYKR--EVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            3333334455  899999999999999999998764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.30  E-value=0.00053  Score=64.71  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        19 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         19 LKKINLDIEEN--QVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             eecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence            34444444556  899999999999999999998753

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.30  E-value=0.0004  Score=62.99  Aligned_cols=38  Identities=32%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ++.+...+.++  ..|+|+|.+|+|||||.+.+++-.++.
T Consensus        43 L~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt   80 (249)
T COG1134          43 LKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPT   80 (249)
T ss_pred             ecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCC
Confidence            34444445566  899999999999999999999988765

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.29  E-value=0.00028  Score=64.79  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      ++++|+|++|.||||+.+.+..
T Consensus        31 ~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            7899999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.29  E-value=0.00066  Score=67.60  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+.+....
T Consensus        51 ei~~I~G~nGsGKSTLlr~L~Gl~~p   76 (382)
T TIGR03415        51 EICVLMGLSGSGKSSLLRAVNGLNPV   76 (382)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            89999999999999999999887653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.29  E-value=0.00015  Score=75.74  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++..
T Consensus       275 il~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~G~~  310 (490)
T PRK10938        275 ILHNLSWQVNPG--EHWQIVGPNGAGKSTLLSLITGDH  310 (490)
T ss_pred             EEeeceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCC
Confidence            445555445556  899999999999999999999854

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=97.28  E-value=0.013  Score=57.47  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             CCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCc-hHHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCC
Q 044393          254 GRKILIILDDVWKELD------LETVGIPANCCKILLTTRL-QQVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVAD  325 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~-~~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~  325 (513)
                      ++.-++|+|+++....      +..+..|.+++.+|++|.+ ..+...+. -...+.+.+++.++..+.+... +.   .
T Consensus       131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---~  206 (342)
T PRK06964        131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---A  206 (342)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---C
Confidence            4566889999876532      3444455557766666665 44443332 2368999999999999998765 21   1


Q ss_pred             CchHHHHHHHHHHhCCCchHHHHHH
Q 044393          326 TTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       326 ~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +     ...++..++|.|+....+.
T Consensus       207 ~-----~~~~l~~~~Gsp~~Al~~~  226 (342)
T PRK06964        207 D-----ADALLAEAGGAPLAALALA  226 (342)
T ss_pred             h-----HHHHHHHcCCCHHHHHHHH
Confidence            1     2345788999998554443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.27  E-value=0.00024  Score=58.72  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=22.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +|.|.|++|+||||+|+.+++...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999999863

...

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=97.26  E-value=0.0015  Score=69.95  Aligned_cols=38  Identities=24%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+...+.+|  .+++|.|++|+|||||.+.+.+....
T Consensus        40 iL~~vs~~i~~G--e~~aI~G~sGsGKSTLL~~L~g~~~~   77 (617)
T TIGR00955        40 LLKNVSGVAKPG--ELLAVMGSSGAGKTTLMNALAFRSPK   77 (617)
T ss_pred             cccCCEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            444444445556  89999999999999999999987643

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.001  Score=69.08  Aligned_cols=151  Identities=20%  Similarity=0.241  Sum_probs=81.9

Q ss_pred             ccchhHHHHHHHHHHh------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393          155 FETTKSACNQITEALK------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW  228 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~  228 (513)
                      .+|-++..++|+..|.      +-..++++++||+|+|||+|++.++.....+  |-..   .++.-.+..++-..    
T Consensus       325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fvR~---sLGGvrDEAEIRGH----  395 (782)
T COG0466         325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FVRI---SLGGVRDEAEIRGH----  395 (782)
T ss_pred             ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EEEE---ecCccccHHHhccc----
Confidence            3477777888887772      1234899999999999999999999988755  4322   22222222211100    


Q ss_pred             hCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----c----cccccc--------------CCCCcEEEE-
Q 044393          229 LGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----D----LETVGI--------------PANCCKILL-  284 (513)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----~----~~~l~~--------------~~~~~~iiv-  284 (513)
                       ...+-+.-+......+    ...+.+.=|++||+++...     |    +-.++.              +..=|.|++ 
T Consensus       396 -RRTYIGamPGrIiQ~m----kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi  470 (782)
T COG0466         396 -RRTYIGAMPGKIIQGM----KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI  470 (782)
T ss_pred             -cccccccCChHHHHHH----HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence             0000011111111112    2223366799999985431     1    111111              111244444 


Q ss_pred             -EeCchH-H-HhhcCCcceeecCCCChHhHHHHHHHhc
Q 044393          285 -TTRLQQ-V-CDRMGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       285 -Ttr~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                       |..+-+ + ...+.....|++.+.+++|-.++-+++.
T Consensus       471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L  508 (782)
T COG0466         471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL  508 (782)
T ss_pred             eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence             333322 1 1223334789999999999988887766

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=97.26  E-value=0.0024  Score=58.11  Aligned_cols=48  Identities=17%  Similarity=0.256  Sum_probs=31.5

Q ss_pred             CCeEEEEEecCCCcccccccc-------cC--CC-CcEEEEEeCchHHHhhcCCcceeec
Q 044393          254 GRKILIILDDVWKELDLETVG-------IP--AN-CCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~~~~l~-------~~--~~-~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      .++-+++||++....|.....       ..  .. +..||++||+......  +...+.+
T Consensus       138 ~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l  195 (204)
T cd03240         138 SNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV  195 (204)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence            378899999998877643221       11  11 5689999999876643  3355554

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK09183 transposase/IS protein; Provisional

Probab=97.26  E-value=0.00049  Score=64.99  Aligned_cols=26  Identities=38%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+.|+|++|+|||+||..+++....
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~  128 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVR  128 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            67889999999999999999877544

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.25  E-value=0.001  Score=71.26  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .++.+.-.+.++  ..++|+|++|+|||||++.+.+...+.
T Consensus       356 il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~  394 (592)
T PRK10790        356 VLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLT  394 (592)
T ss_pred             eeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            455555555666  899999999999999999998887653

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=97.25  E-value=0.00074  Score=62.37  Aligned_cols=36  Identities=33%  Similarity=0.464  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.+.....
T Consensus        21 l~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~   56 (220)
T TIGR02982        21 LFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRS   56 (220)
T ss_pred             EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34444444555  8999999999999999999998654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.0028  Score=61.31  Aligned_cols=27  Identities=33%  Similarity=0.439  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+|.|+|.+|+||||+++.+.+-.+++
T Consensus       350 elvFliG~NGsGKST~~~LLtGL~~Pq  376 (546)
T COG4615         350 ELVFLIGGNGSGKSTLAMLLTGLYQPQ  376 (546)
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCCC
Confidence            799999999999999999998887765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.24  E-value=0.0016  Score=61.54  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++...
T Consensus        19 l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         19 VKNVTMKIFKN--QITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             EeeeeEeecCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence            44444445556  899999999999999999999754

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.24  E-value=0.014  Score=59.83  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP-DIINVQSELVKWLGWELKE-KDEEERADRLRLMFSES  252 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~l~  252 (513)
                      .+|+|+|++|+||||++..++.....+.....+..++..... .....+......++..... .+.......+..   + 
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~---l-  426 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER---L-  426 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH---h-
Confidence            899999999999999999998876543222334444433211 1222333333334433222 222333333332   2 


Q ss_pred             cCCeEEEEEecCC
Q 044393          253 KGRKILIILDDVW  265 (513)
Q Consensus       253 ~~~~~LlVLDd~~  265 (513)
                      . ..-+|++|.+-
T Consensus       427 ~-~~DLVLIDTaG  438 (559)
T PRK12727        427 R-DYKLVLIDTAG  438 (559)
T ss_pred             c-cCCEEEecCCC
Confidence            2 45588899874

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.24  E-value=0.00034  Score=66.40  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=30.5

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      |+...++.+...+..+  .+++|+|++|+|||||++.+....
T Consensus        19 ~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263         19 GNFMAVRDSHVPIRKN--EITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHccc
Confidence            4333445555555566  899999999999999999998765

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.23  E-value=0.0018  Score=61.25  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=26.7

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ++.+...+..+  .+++|+|++|+|||||++.++..
T Consensus        21 l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         21 LKGIDLDFNQN--EITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcc
Confidence            34444444555  89999999999999999999875

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0062  Score=61.03  Aligned_cols=154  Identities=23%  Similarity=0.274  Sum_probs=88.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-Hhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SES  252 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~  252 (513)
                      ...+.+.|++|+|||+||..++..-    .|..+-.++...-                  -+.++......+.+.+ ...
T Consensus       538 lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~m------------------iG~sEsaKc~~i~k~F~DAY  595 (744)
T KOG0741|consen  538 LVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDM------------------IGLSESAKCAHIKKIFEDAY  595 (744)
T ss_pred             ceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHc------------------cCccHHHHHHHHHHHHHHhh
Confidence            4567889999999999999988754    3765544421111                  1122222333333322 122


Q ss_pred             cCCeEEEEEecCCCcccccccccCCC-----------------CcE--EEEEeCchHHHhhcCC----cceeecCCCCh-
Q 044393          253 KGRKILIILDDVWKELDLETVGIPAN-----------------CCK--ILLTTRLQQVCDRMGC----DTRIKLDALDQ-  308 (513)
Q Consensus       253 ~~~~~LlVLDd~~~~~~~~~l~~~~~-----------------~~~--iivTtr~~~v~~~~~~----~~~~~l~~L~~-  308 (513)
                      ...-.+||+||+....||-.+++.+.                 |-+  |+-||....+...|+.    ...|.++.++. 
T Consensus       596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~  675 (744)
T KOG0741|consen  596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG  675 (744)
T ss_pred             cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence            23667999999988888766653321                 333  4445556667666543    25788999887 


Q ss_pred             HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          309 AEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       309 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      ++..+.++..--  ..+.....++++...+|  +-..|+.+-.++
T Consensus       676 ~~~~~vl~~~n~--fsd~~~~~~~~~~~~~~--~~vgIKklL~li  716 (744)
T KOG0741|consen  676 EQLLEVLEELNI--FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI  716 (744)
T ss_pred             HHHHHHHHHccC--CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence            667777765421  12333455566666666  333444444443

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.23  E-value=0.0013  Score=62.01  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=26.4

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      +.+...+.++  .+++|+|++|+|||||++.+++..
T Consensus        20 ~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266         20 KNVNLDIPKN--SVTALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhh
Confidence            3333334455  899999999999999999998753

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.22  E-value=0.00096  Score=71.25  Aligned_cols=38  Identities=26%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.+.-.+.+|  ..++|+|++|+|||||++.+.+...+
T Consensus       355 iL~~inl~i~~G--e~i~IvG~sGsGKSTLlklL~gl~~p  392 (576)
T TIGR02204       355 ALDGLNLTVRPG--ETVALVGPSGAGKSTLFQLLLRFYDP  392 (576)
T ss_pred             cccceeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            455555555666  89999999999999999999988765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.21  E-value=0.0029  Score=60.08  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.+...+.++  .+++|+|++|+|||||++.+++...
T Consensus        23 l~~isl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         23 IEGISMDIYRN--KVTAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             ecceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34444444455  8999999999999999999998654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.21  E-value=0.00069  Score=67.36  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=27.6

Q ss_pred             HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.-.+..+  .+-++.|.+|.|||||.+.+|.-+++
T Consensus        23 V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~P   56 (501)
T COG3845          23 VSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQP   56 (501)
T ss_pred             eeeeecCC--cEEEEeccCCCCHHHHHHHHhCcccC
Confidence            33334455  78999999999999999999998765

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.01  Score=56.86  Aligned_cols=194  Identities=24%  Similarity=0.247  Sum_probs=109.8

Q ss_pred             cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +....|-+..+++|...+.-             +.++=|.++||+|.|||-||+.+++.....  |     +-+..    
T Consensus       150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvvg----  218 (406)
T COG1222         150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVG----  218 (406)
T ss_pred             hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEecc----
Confidence            33445667777777776631             135679999999999999999999987654  3     32221    


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh-ccCCeEEEEEecCCCcc----------c----------cccc--cc
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSE-SKGRKILIILDDVWKEL----------D----------LETV--GI  275 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l-~~~~~~LlVLDd~~~~~----------~----------~~~l--~~  275 (513)
                          .++.+..-.        +-...++.+|.+ ....+++|.+|+++..-          |          +.++  ..
T Consensus       219 ----SElVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD  286 (406)
T COG1222         219 ----SELVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD  286 (406)
T ss_pred             ----HHHHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence                122221111        112333443333 23578999999985421          0          1111  02


Q ss_pred             CCCCcEEEEEeCchHHHhh-----cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch----HH
Q 044393          276 PANCCKILLTTRLQQVCDR-----MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL----AI  346 (513)
Q Consensus       276 ~~~~~~iivTtr~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL----ai  346 (513)
                      +.++.+||..|...+..+.     -.-.+.+++..-+.+.-.++|+-+...-....+  -..+.|++.|.|..=    |+
T Consensus       287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d--vd~e~la~~~~g~sGAdlkai  364 (406)
T COG1222         287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD--VDLELLARLTEGFSGADLKAI  364 (406)
T ss_pred             CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC--cCHHHHHHhcCCCchHHHHHH
Confidence            2237899988876544322     123367788766666667777766653221111  124668888888764    56


Q ss_pred             HHHHHHhc--C-C---ChHHHHHHHHHHhh
Q 044393          347 KVVGSALT--G-R---NADEWNVALDKLQN  370 (513)
Q Consensus       347 ~~~~~~l~--~-~---~~~~w~~~l~~l~~  370 (513)
                      .+=|++++  . +   +.+....+.+++..
T Consensus       365 ctEAGm~AiR~~R~~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         365 CTEAGMFAIRERRDEVTMEDFLKAVEKVVK  394 (406)
T ss_pred             HHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence            66677764  1 1   44555555555433

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.19  E-value=0.0009  Score=64.71  Aligned_cols=36  Identities=25%  Similarity=0.467  Sum_probs=28.6

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+.-.+.++  ..++++||+|+|||||.+.++.-..+
T Consensus        20 ~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~   55 (338)
T COG3839          20 KDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEP   55 (338)
T ss_pred             ecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3333344455  89999999999999999999988765

>PRK04132 replication factor C small subunit; Provisional

Probab=97.19  E-value=0.0096  Score=64.84  Aligned_cols=152  Identities=14%  Similarity=0.053  Sum_probs=91.3

Q ss_pred             EEc--CCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCe
Q 044393          179 LHG--LGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRK  256 (513)
Q Consensus       179 I~G--~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~  256 (513)
                      +.|  |.++||||+|..+++..-....-..++-++.+...... ..++++..+....                ...+.+.
T Consensus       569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~----------------~~~~~~~  631 (846)
T PRK04132        569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN-VIREKVKEFARTK----------------PIGGASF  631 (846)
T ss_pred             hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcC----------------CcCCCCC
Confidence            346  88999999999999987443212235556666544433 3344443321100                1112245


Q ss_pred             EEEEEecCCCcc--c---ccc-cccCCCCcEEEEEeCch-HHHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCCch
Q 044393          257 ILIILDDVWKEL--D---LET-VGIPANCCKILLTTRLQ-QVCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADTTL  328 (513)
Q Consensus       257 ~LlVLDd~~~~~--~---~~~-l~~~~~~~~iivTtr~~-~v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~  328 (513)
                      -++|||++....  .   +.. +..+.+.+++|+++.+. .+...+. ....+.+.+++.++-...+...+..+... -.
T Consensus       632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~  710 (846)
T PRK04132        632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LT  710 (846)
T ss_pred             EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CC
Confidence            799999997763  2   222 22334477777777664 2333322 23689999999999988888766432211 12


Q ss_pred             HHHHHHHHHHhCCCchHHHH
Q 044393          329 TDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       329 ~~~~~~i~~~~~G~PLai~~  348 (513)
                      ++....|++.|+|.+..+..
T Consensus       711 ~e~L~~Ia~~s~GDlR~AIn  730 (846)
T PRK04132        711 EEGLQAILYIAEGDMRRAIN  730 (846)
T ss_pred             HHHHHHHHHHcCCCHHHHHH
Confidence            56788999999998864433

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.18  E-value=0.0036  Score=54.07  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=24.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+++|+|++|.|||||...++.-..+.
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~P~   52 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFETPA   52 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccCCC
Confidence            899999999999999999998876543

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.17  E-value=0.0043  Score=60.58  Aligned_cols=82  Identities=21%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             CeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HHhhcC-CcceeecCCCChHhHHHHHHHhcCCCCCCC
Q 044393          255 RKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VCDRMG-CDTRIKLDALDQAEGLDLLREHAGIDVADT  326 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~  326 (513)
                      ++-++|+|++.....      +..+..+..+..+|++|++.. +...+. ....+.+.+++.+++.+.+.+. +.   ..
T Consensus       113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---~~  188 (325)
T PRK08699        113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV---AE  188 (325)
T ss_pred             CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---Cc
Confidence            444555566544321      222233334677888888754 332222 2267899999999999888754 21   11


Q ss_pred             chHHHHHHHHHHhCCCchH
Q 044393          327 TLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       327 ~~~~~~~~i~~~~~G~PLa  345 (513)
                        ..   ..+..++|.|+.
T Consensus       189 --~~---~~l~~~~g~p~~  202 (325)
T PRK08699        189 --PE---ERLAFHSGAPLF  202 (325)
T ss_pred             --HH---HHHHHhCCChhh
Confidence              11   123568899964

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.15  E-value=0.00036  Score=74.25  Aligned_cols=41  Identities=27%  Similarity=0.402  Sum_probs=34.2

Q ss_pred             hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       158 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+..++++...+.++  ..++|+|++|+|||||++.+.+-...
T Consensus       341 ~~~vl~~is~~i~~G--e~vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         341 KKPVLKDISFSIEPG--EKVAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             CCccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            345677777777777  89999999999999999999887765

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0027  Score=64.68  Aligned_cols=93  Identities=22%  Similarity=0.354  Sum_probs=58.3

Q ss_pred             cccccchhHHHHHHHHHHh---cC---------CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393          152 FSSFETTKSACNQITEALK---KG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII  219 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~  219 (513)
                      +..+.|-+..+.+|...+.   ..         .++-|.++||+|+|||.||+.+++....-  |     +.++.+    
T Consensus       189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp----  257 (802)
T KOG0733|consen  189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP----  257 (802)
T ss_pred             hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence            4445677777776666552   11         24678999999999999999999998865  2     333221    


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCC
Q 044393          220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWK  266 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~  266 (513)
                          +|+.    ...+.++..+.+...   ...+.-++++++|+++.
T Consensus       258 ----eivS----GvSGESEkkiRelF~---~A~~~aPcivFiDeIDA  293 (802)
T KOG0733|consen  258 ----EIVS----GVSGESEKKIRELFD---QAKSNAPCIVFIDEIDA  293 (802)
T ss_pred             ----hhhc----ccCcccHHHHHHHHH---HHhccCCeEEEeecccc
Confidence                1221    123334444333333   44445899999999854

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.13  E-value=0.0092  Score=65.43  Aligned_cols=169  Identities=20%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +....|.+..++.+...+.-             ...+-+.++|++|+||||||+.+++.....  |     +.++..   
T Consensus       177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~-----i~i~~~---  246 (733)
T TIGR01243       177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F-----ISINGP---  246 (733)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E-----EEEecH---
Confidence            34456888777777666521             123678999999999999999999876432  1     222211   


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccccCC--CCc
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVGIPA--NCC  280 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~~~~--~~~  280 (513)
                       .+    ..    ...+.........+.   ......+.+|+|||+.....                +..+....  .+.
T Consensus       247 -~i----~~----~~~g~~~~~l~~lf~---~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~  314 (733)
T TIGR01243       247 -EI----MS----KYYGESEERLREIFK---EAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR  314 (733)
T ss_pred             -HH----hc----ccccHHHHHHHHHHH---HHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence             00    00    001111111222222   22234678999999854210                11111111  133


Q ss_pred             EEEE-EeCchH-HHhhc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          281 KILL-TTRLQQ-VCDRM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       281 ~iiv-Ttr~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      .+++ ||+... +-..+    .....+.+...+.++-.++++..........  ......+++.+.|..-
T Consensus       315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g  382 (733)
T TIGR01243       315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG  382 (733)
T ss_pred             EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence            3333 555432 11111    1235677888888888888886553211111  1235678888888754

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.12  E-value=0.0029  Score=62.11  Aligned_cols=37  Identities=19%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.+++...
T Consensus        97 ~L~~is~~I~~G--e~v~IvG~~GsGKSTLl~~L~g~~~  133 (329)
T PRK14257         97 VLHDLNLDIKRN--KVTAFIGPSGCGKSTFLRNLNQLND  133 (329)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence            445555555566  8999999999999999999998753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.11  E-value=0.0028  Score=68.08  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.+...+..+  .+++|+|++|+|||||++.++....
T Consensus       339 ~l~~vs~~i~~G--e~~~lvG~nGsGKSTLlk~i~Gl~~  375 (623)
T PRK10261        339 AVEKVSFDLWPG--ETLSLVGESGSGKSTTGRALLRLVE  375 (623)
T ss_pred             EEeeeEeEEcCC--CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            344454445555  8999999999999999999988754

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.11  E-value=0.00025  Score=65.41  Aligned_cols=167  Identities=14%  Similarity=0.141  Sum_probs=78.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh--hcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC---C-CCHHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR--QEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK---E-KDEEERADRLRL  247 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~~~~~l~~  247 (513)
                      .+++.|+|++|.||||+++.+.-..-  .-+.|...--..+       .....++..++....   . ..-......+..
T Consensus        30 ~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~-------~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~  102 (222)
T cd03285          30 SRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADI-------PIVDCILARVGASDSQLKGVSTFMAEMLETAA  102 (222)
T ss_pred             CeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEE-------eccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence            47999999999999999998764321  1111111100001       112222222222110   0 111111222222


Q ss_pred             HHHhccCCeEEEEEecC---CCccccccc-------ccCCCCcEEEEEeCchHHHhhcCCc---ceeecCCCChH--hHH
Q 044393          248 MFSESKGRKILIILDDV---WKELDLETV-------GIPANCCKILLTTRLQQVCDRMGCD---TRIKLDALDQA--EGL  312 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~---~~~~~~~~l-------~~~~~~~~iivTtr~~~v~~~~~~~---~~~~l~~L~~~--e~~  312 (513)
                      .+.... ++-|++||++   ++..|...+       .....++.+|+|||..++.......   ...++.....+  +..
T Consensus       103 il~~~~-~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~  181 (222)
T cd03285         103 ILKSAT-ENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL  181 (222)
T ss_pred             HHHhCC-CCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence            222233 7889999999   666552221       1112378999999986665433211   11222111111  111


Q ss_pred             HHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          313 DLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       313 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                       .|..........   ...+-.+++.+ |+|-.+..-|.-+
T Consensus       182 -~~~Y~l~~G~~~---~s~a~~~a~~~-g~p~~vi~~A~~~  217 (222)
T cd03285         182 -TMLYKVEKGACD---QSFGIHVAELA-NFPKEVIEMAKQK  217 (222)
T ss_pred             -eEEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHH
Confidence             111111111111   34566677666 8888777666544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0081  Score=61.97  Aligned_cols=147  Identities=20%  Similarity=0.187  Sum_probs=78.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+-|.++||+|+|||++|+.+++.....  |     +++...    +    ++.    .+-+.++..+.+..+   ....
T Consensus       468 pkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----E----L~s----k~vGeSEr~ir~iF~---kAR~  525 (693)
T KOG0730|consen  468 PKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----E----LFS----KYVGESERAIREVFR---KARQ  525 (693)
T ss_pred             CceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----H----HHH----HhcCchHHHHHHHHH---HHhh
Confidence            5789999999999999999999988765  3     333221    0    110    111122222222222   2223


Q ss_pred             CCeEEEEEecCCCccc-------------ccccc---cCCC---CcEEEEEeCchHHHhh--cC---CcceeecCCCChH
Q 044393          254 GRKILIILDDVWKELD-------------LETVG---IPAN---CCKILLTTRLQQVCDR--MG---CDTRIKLDALDQA  309 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~-------------~~~l~---~~~~---~~~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~  309 (513)
                      -.++++.||+++....             +.+++   ....   +.-||-.|..++..+.  +.   ....+.++.-+.+
T Consensus       526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~  605 (693)
T KOG0730|consen  526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE  605 (693)
T ss_pred             cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence            3668999998854311             11111   1111   2233333333322211  22   3467888888888


Q ss_pred             hHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          310 EGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       310 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      .-.++|+.++..-...+.  -...+|++++.|..=
T Consensus       606 aR~~Ilk~~~kkmp~~~~--vdl~~La~~T~g~SG  638 (693)
T KOG0730|consen  606 ARLEILKQCAKKMPFSED--VDLEELAQATEGYSG  638 (693)
T ss_pred             HHHHHHHHHHhcCCCCcc--ccHHHHHHHhccCCh
Confidence            889999988864322221  124567777766553

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.09  E-value=0.0025  Score=61.84  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=25.3

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      +..+.|+||+|+|||.+|+.+++.....
T Consensus       148 PlgllL~GPPGcGKTllAraiA~elg~~  175 (413)
T PLN00020        148 PLILGIWGGKGQGKSFQCELVFKKMGIE  175 (413)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence            5789999999999999999999998754

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.09  E-value=0.0036  Score=58.85  Aligned_cols=82  Identities=30%  Similarity=0.312  Sum_probs=49.9

Q ss_pred             HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHH
Q 044393          164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERAD  243 (513)
Q Consensus       164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  243 (513)
                      .+..++.++  .-+.++|++|+|||.||..+.+..- +.. ..+.+++      ..+++.++......    ..   ...
T Consensus        97 ~~~~~~~~~--~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~~----~~---~~~  159 (254)
T COG1484          97 SLVEFFERG--ENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFDE----GR---LEE  159 (254)
T ss_pred             HHHHHhccC--CcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHhc----Cc---hHH
Confidence            344455533  7899999999999999999999998 422 3344553      34455555554432    11   111


Q ss_pred             HHHHHHHhccCCeEEEEEecCCC
Q 044393          244 RLRLMFSESKGRKILIILDDVWK  266 (513)
Q Consensus       244 ~l~~~~~l~~~~~~LlVLDd~~~  266 (513)
                      .+..   ... +-=||||||+-.
T Consensus       160 ~l~~---~l~-~~dlLIiDDlG~  178 (254)
T COG1484         160 KLLR---ELK-KVDLLIIDDIGY  178 (254)
T ss_pred             HHHH---Hhh-cCCEEEEecccC
Confidence            1221   111 445999999843

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.09  E-value=0.00084  Score=65.01  Aligned_cols=37  Identities=30%  Similarity=0.485  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.+.-.|..+  ..++|+|.+|+|||||.+.+..-...
T Consensus       303 Vd~isl~L~~g--qTlGlVGESGSGKsTlG~allrL~~s  339 (534)
T COG4172         303 VDGISLTLRRG--QTLGLVGESGSGKSTLGLALLRLIPS  339 (534)
T ss_pred             eccceeEecCC--CeEEEEecCCCCcchHHHHHHhhcCc
Confidence            34444455566  89999999999999999999887654

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.06  E-value=0.0032  Score=60.35  Aligned_cols=84  Identities=26%  Similarity=0.290  Sum_probs=47.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQDP-DIINVQSELVKWLGWELKE-KDEEERADRLRLMFSE  251 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~l  251 (513)
                      .+++|+|++|+||||++..++...... +.+ .+..++..... .....+....+.++.+... .+.......+..   +
T Consensus       195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~---~  270 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR---L  270 (282)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH---c
Confidence            799999999999999999999887654 222 34445443211 1223334444445544322 223333333332   2


Q ss_pred             ccCCeEEEEEecC
Q 044393          252 SKGRKILIILDDV  264 (513)
Q Consensus       252 ~~~~~~LlVLDd~  264 (513)
                       . ..=++++|.+
T Consensus       271 -~-~~d~vliDt~  281 (282)
T TIGR03499       271 -R-DKDLILIDTA  281 (282)
T ss_pred             -c-CCCEEEEeCC
Confidence             2 3457888864

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.03  E-value=0.0029  Score=62.41  Aligned_cols=86  Identities=20%  Similarity=0.145  Sum_probs=50.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-CCChHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-DPDIINVQSELVKWLGWELKEK-DEEERADRLRLMFSES  252 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~~~l~  252 (513)
                      .+++++|++|+||||++..++...........+..++... .....+.+....+.++.+.... +..+....+.   .+.
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~---~l~  214 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA---ELR  214 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH---Hhc
Confidence            7999999999999999999998765431123444554332 1234455666666666654322 2222222222   222


Q ss_pred             cCCeEEEEEecCC
Q 044393          253 KGRKILIILDDVW  265 (513)
Q Consensus       253 ~~~~~LlVLDd~~  265 (513)
                        ++-++++|.+-
T Consensus       215 --~~DlVLIDTaG  225 (374)
T PRK14722        215 --NKHMVLIDTIG  225 (374)
T ss_pred             --CCCEEEEcCCC
Confidence              34567799874

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.03  E-value=0.0031  Score=57.74  Aligned_cols=45  Identities=13%  Similarity=0.132  Sum_probs=34.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      .++.|+|++|+|||+|+.+++......  ...++|+.... ++...+.
T Consensus        13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~   57 (209)
T TIGR02237        13 TITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFK   57 (209)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHH
Confidence            799999999999999999988776543  45677887765 4544433

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	513
1z6t_A	591	Structure Of The Apoptotic Protease-activating Fact		1e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-09

>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1 Bound To Adp Length = 591

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 38/251 (15%)
Query: 148 IPRFFSSFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD 205
           +P+    F T K   N I + L K  G    V +HG+ G GK+ LA      +R   + +
Sbjct: 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA---AEAVRDHSLLE 175
Query: 206 EV---GIATVS---QDPD--IINVQSELVKWLGWELKEKDE----------EERADRLRL 247
                G+  VS   QD    ++ +Q+   +       ++DE          EE  DRLR+
Sbjct: 176 GCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL------DQDESFSQRLPLNIEEAKDRLRI 229
Query: 248 MFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDR-MGCDTRIKLD-A 305
           +      R  L+ILDDVW    L+      + C+ILLTTR + V D  MG    + ++ +
Sbjct: 230 LMLRKHPRS-LLILDDVWDSWVLKAFD---SQCQILLTTRDKSVTDSVMGPKYVVPVESS 285
Query: 306 LDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVAL 365
           L + +GL++L     +  AD  L + +  +  ECKG PL + ++G AL     + W   L
Sbjct: 286 LGKEKGLEILSLFVNMKKAD--LPEQAHSIIKECKGSPLVVSLIG-ALLRDFPNRWEYYL 342
Query: 366 DKLQNAKLDKI 376
            +LQN +  +I
Sbjct: 343 KQLQNKQFKRI 353

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 34/249 (13%)
Query: 148 IPRFFSSFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD 205
           +P+    F T K   + I + L K  G    V ++G+ G GK+ LA      +R   + +
Sbjct: 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLA---AEAVRDHSLLE 175
Query: 206 EV---GIATVS---QDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGR---- 255
                G+  VS   QD   +     L+K     ++   EE  + RL L   E+K R    
Sbjct: 176 GCFSGGVHWVSIGKQDKSGL-----LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL 230
Query: 256 ------KILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDR-MGCDTRIKLDA-LD 307
                 + L+ILDDVW    L+      N C+ILLTTR + V D  MG    + +++ L 
Sbjct: 231 MLRKHPRSLLILDDVWDPWVLKAFD---NQCQILLTTRDKSVTDSVMGPKHVVPVESGLG 287
Query: 308 QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDK 367
           + +GL++L     +   D  L   +  +  ECKG PL + ++G AL     + W   L +
Sbjct: 288 REKGLEILSLFVNMKKED--LPAEAHSIIKECKGSPLVVSLIG-ALLRDFPNRWAYYLRQ 344
Query: 368 LQNAKLDKI 376
           LQN +  +I
Sbjct: 345 LQNKQFKRI 353

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 34/249 (13%)
Query: 148 IPRFFSSFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD 205
           +P+    F T K   + I + L K  G    V ++G+ G GK+ LA      +R   + +
Sbjct: 126 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLA---AEAVRDHSLLE 182
Query: 206 EV---GIATVS---QDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGR---- 255
                G+  VS   QD   +     L+K     ++   EE  + RL L   E+K R    
Sbjct: 183 GCFSGGVHWVSIGKQDKSGL-----LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL 237
Query: 256 ------KILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDR-MGCDTRIKLDA-LD 307
                 + L+ILDDVW    L+      N C+ILLTT  + V D  MG    + +++ L 
Sbjct: 238 MLRKHPRSLLILDDVWDPWVLKAFD---NQCQILLTTSDKSVTDSVMGPKHVVPVESGLG 294
Query: 308 QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDK 367
           + +GL++L     +   D  L   +  +  ECKG PL + ++G AL     + W   L +
Sbjct: 295 REKGLEILSLFVNMKKED--LPAEAHSIIKECKGSPLVVSLIG-ALLRDFPNRWAYYLRQ 351
Query: 368 LQNAKLDKI 376
           LQN +  +I
Sbjct: 352 LQNKQFKRI 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	513
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-60
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-60
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	5e-52
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-27
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-05
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	7e-04
2vli_A	183	Antibiotic resistance protein; transferase, tunica	8e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  206 bits (526), Expect = 2e-60
 Identities = 66/461 (14%), Positives = 147/461 (31%), Gaps = 51/461 (11%)

Query: 32  IVKELEDKETNLKEAQDGIHERVEQERQIHRAID-IEKDVEKWLADVVKEMADVQTLKTK 90
             + +    T L+   + +     Q  ++   ID    + +  LAD +++  D       
Sbjct: 40  HSELISKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYID------- 92

Query: 91  IAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPR 150
                             + +          ++    R   +   L   +P     +I  
Sbjct: 93  ------------------FAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIR- 133

Query: 151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ--EKIFDEVG 208
                E       +  + +    +  + LHG  G GK+ +A    ++  Q     +D + 
Sbjct: 134 -----EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIV 188

Query: 209 IATVSQ--DPDIINVQSELVKWLGWELKEKD----EEERADRLRLMFSES--KGRKILII 260
               S        ++ ++++  L  E    +    E   +  L+ M   +       L +
Sbjct: 189 WLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFV 248

Query: 261 LDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTR-IKLDALDQAEGLDLLREHA 319
            DDV +E  +          + L+TTR  ++ +        I++ +L+  E  D L  + 
Sbjct: 249 FDDVVQEETIRWA--QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYG 306

Query: 320 GIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGI 379
                     DV  +  +   G P  + +   +   +  ++     +KL++  L  +E I
Sbjct: 307 MPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECI 366

Query: 380 DKDSL-GVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESI 438
              S   +   L+   + L+ ++ RS      + P    I ++         +   +   
Sbjct: 367 TPYSYKSLAMALQRCVEVLS-DEDRSALAFAVVMPPGVDIPVKLWSCVIPVDI--CSNEE 423

Query: 439 EKARSLLRGTIKGLKDSSLLLDIDDDGF--VKMHDIVRDVA 477
           E+    +   +K L     LL          K+  I+    
Sbjct: 424 EQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFL 464

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  213 bits (544), Expect = 3e-60
 Identities = 82/482 (17%), Positives = 161/482 (33%), Gaps = 100/482 (20%)

Query: 33  VKELEDKETNL--KEAQDGIHERVEQERQIHRAIDI-----EKDVEKWLADVVKEMADVQ 85
            K+++D   ++  KE  D I    +      R         E+ V+K++ +V++   + +
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYK 92

Query: 86  TLKTKIAEKKSCFNGWCPNWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKE 145
            L + I  ++                 R+ S  TR   + +DR  +N   +         
Sbjct: 93  FLMSPIKTEQ-----------------RQPSMMTRMYIEQRDR-LYNDNQVFAK------ 128

Query: 146 MHIPRFFSSFETTKSACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF 204
            ++ R             ++ +AL +    K V + G+ G GKT +A  V    + +   
Sbjct: 129 YNVSR--------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 205 DE----VGIATVSQDPDIINVQSELVKWLGWELKEKDE---------EERADRLRLMFSE 251
           D     + +   +    ++ +  +L+  +      + +               LR +   
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 252 SKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRIKL------DA 305
                 L++L +V          +    CKILLTTR +QV D +   T   +        
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 306 LDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVAL 365
           L   E   LL ++      D        R        P  + ++           W    
Sbjct: 298 LTPDEVKSLLLKYLDCRPQD------LPREV--LTTNPRRLSIIA-ESIRDGLATW---- 344

Query: 366 DKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLG 425
           D  ++   DK+  I          ++ S + L   + R  F   S+FP    I    LL 
Sbjct: 345 DNWKHVNCDKLTTI----------IESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILL- 392

Query: 426 YAVGLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKMHDIVRDVAIWIGKVEK 485
               L+W+     +    +       L   SL+     +  + +  I  ++ +   K+E 
Sbjct: 393 ---SLIWFDVIKSDVMVVV-----NKLHKYSLVEKQPKESTISIPSIYLELKV---KLEN 441

Query: 486 KY 487
           +Y
Sbjct: 442 EY 443

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 61/368 (16%), Positives = 108/368 (29%), Gaps = 95/368 (25%)

Query: 14  LLVDATVKQARYLFCFN---------------SIVKELEDKETNLKEAQDGIHERVEQER 58
           LLV   V+ A+    FN                 +        +L      +    E + 
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKS 305

Query: 59  QIHRAIDIEKDVEKWLADVVKEMADVQTLKTKI--AEKKSCFNGWCPNWGFRYWMGRKAS 116
            + + +D          D+ +E+      +  I     +     W  NW  ++ +     
Sbjct: 306 LLLKYLDCRPQ------DLPREVLTTNPRRLSIIAESIRDGLATW-DNW--KH-VNCDKL 355

Query: 117 KETRKLS-DLQD----RGKFNTVALPKPLPSDKEMHIP-RFFSSF--ETTKSACNQITEA 168
               + S ++ +    R  F+ +++    P     HIP    S    +  KS    +   
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV---FPPS--AHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 169 LKKGS-------TKMVGLHGL------GGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD 215
           L K S          + +  +          +  L + + +     K FD   +     D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 216 PDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGI 275
               +        +G  LK  +  ER    R++F           LD  + E  +     
Sbjct: 471 QYFYS-------HIGHHLKNIEHPERMTLFRMVF-----------LDFRFLEQKIRHDST 512

Query: 276 PANCCKILLTTRLQQ-------VCDRMGCDTRIKLDALD----------QAEGLDLLR-- 316
             N    +L T LQQ       +CD      R+    LD           ++  DLLR  
Sbjct: 513 AWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

Query: 317 ---EHAGI 321
              E   I
Sbjct: 572 LMAEDEAI 579

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  185 bits (471), Expect = 5e-52
 Identities = 81/333 (24%), Positives = 138/333 (41%), Gaps = 37/333 (11%)

Query: 163 NQITEALKKGSTKM--VGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA--TVSQDPDI 218
           N I + L K   +   V +HG+ G GK+ LA          +     G+   +V +    
Sbjct: 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193

Query: 219 --INVQSELVKWLG-----WELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLE 271
             +     L   L       +    + EE  DRLR++    K  + L+ILDDVW    L+
Sbjct: 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML-RKHPRSLLILDDVWDSWVLK 252

Query: 272 TVGIPANCCKILLTTRLQQVCDRMGCDTRI--KLDALDQAEGLDLLREHAGIDVADTTLT 329
                 + C+ILLTTR + V D +     +     +L + +GL++L     +  AD  L 
Sbjct: 253 AF---DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKAD--LP 307

Query: 330 DVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSL-GVYG 388
           + +  +  ECKG PL + ++G+ L     + W   L +LQN +  +I          +  
Sbjct: 308 EQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDE 366

Query: 389 CLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGT 448
            +  S + L  ED +  +   S+  +D K+  + L      ++W   E  E+   +L   
Sbjct: 367 AMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLC-----ILW-DME-TEEVEDIL--- 415

Query: 449 IKGLKDSSLLLDIDDDGFV---KMHDIVRDVAI 478
            +   + SLL   D +G      +HD+  D   
Sbjct: 416 -QEFVNKSLLF-CDRNGKSFRYYLHDLQVDFLT 446

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  116 bits (292), Expect = 1e-27
 Identities = 84/375 (22%), Positives = 141/375 (37%), Gaps = 35/375 (9%)

Query: 117 KETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRFFSSFETTKSACNQITEALKKGST-- 174
           +    L         +            E  +P+    F T K   + I + L K +   
Sbjct: 88  QSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEP 147

Query: 175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS----QDPDIINVQSELVKWLG 230
             V ++G+ G GK+ LA          +     G+  VS        ++     L   L 
Sbjct: 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 207

Query: 231 WELKEKDE-----EERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLT 285
            E           EE  DRLR++      R  L+ILDDVW    L+        C+ILLT
Sbjct: 208 QEESFSQRLPLNIEEAKDRLRVLMLRKHPR-SLLILDDVWDPWVLKAFDNQ---CQILLT 263

Query: 286 TRLQQVCDRMGCDTRIK--LDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP 343
           TR + V D +     +      L + +GL++L     +   D  L   +  +  ECKG P
Sbjct: 264 TRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED--LPAEAHSIIKECKGSP 321

Query: 344 LAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSLG-VYGCLKFSYDYLNGEDS 402
           L + ++G+ L     + W   L +LQN +  +I          +   +  S + L  ED 
Sbjct: 322 LVVSLIGALLR-DFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDI 379

Query: 403 RSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGLKDSSLL-LDI 461
           +  +   S+  +D K+  + L      ++W      E+   +L+       + SLL  + 
Sbjct: 380 KDYYTDLSILQKDVKVPTKVL-----CVLW--DLETEEVEDILQ----EFVNKSLLFCNR 428

Query: 462 DDDGFV-KMHDIVRD 475
           +   F   +HD+  D
Sbjct: 429 NGKSFCYYLHDLQVD 443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 11/216 (5%)

Query: 44  KEAQDGIHERVEQERQIHRAIDIEKDVEKWLADVVKEMADVQTLKTKIAEKKSCFNGWCP 103
              +D     +     +   + +  ++ K      +    V+ +    A+          
Sbjct: 327 NVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQ 386

Query: 104 NWGFRYWMGRKASKETRKLSDLQDRGKFNTVALPKPLPSDKEMHIPRF------FSSFET 157
            W              +K  D+ D  +   V      P+  +            FS    
Sbjct: 387 AWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYG 446

Query: 158 TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFV-GNQLRQEKIFDEVGIATVSQDP 216
            K   N+    LK+      G+ G  G GK+TL + +   Q+      +E     V  D 
Sbjct: 447 AKILLNKTQLRLKRARR--YGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI 504

Query: 217 DIINVQSELVKWLGWELKEKDEEERADRL-RLMFSE 251
           D  +  + ++ ++ +E     +E   D+L    F++
Sbjct: 505 DGTHSDTSVLDFV-FESGVGTKEAIKDKLIEFGFTD 539

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Length = 412

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 126 QDRGKFNTVALPKPLPS-DKEM-HIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLG 183
           +DR  F+   +P  L     E   + R + +   + +  + +          + G  G  
Sbjct: 10  KDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVN--------MIYGSIGRV 61

Query: 184 GVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN----VQSELVKWLGWELKEKDEE 239
           G+GKTTLAKF   ++ +    + + +     +         + S +V+  G+ ++ +   
Sbjct: 62  GIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAP 121

Query: 240 ERADRLRLM-FSESKGRKILIILDDV 264
                  L+     +   +L+ILD+ 
Sbjct: 122 ALDILKALVDNLYVENHYLLVILDEF 147

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 22/177 (12%)

Query: 179 LHGLGGVGKTTLAKFVGNQLRQEKIFD--EVGIATVSQDPDIINVQSELVKWLGWELKEK 236
           ++G  GVGKT  A  +  +L    +F+  E+G A     P       E   W+       
Sbjct: 10  INGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLM---- 65

Query: 237 DEEERADRLRLMFSESKGRKIL---IILDDVWKEL--DLETVGIPANCCKILLTTRLQQV 291
                 D L+    E+ G  I+   I      + L   L+  G+        L   L  V
Sbjct: 66  -----LDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSV--HHFTLIAPLNVV 118

Query: 292 CDRMGCDTRIKLDALDQAEGLDLLREHAG---IDVADTTLTDVSKRVADECKGLPLA 345
            +R+  D + +++     + L+ LR       ID A      V++++A +  GL LA
Sbjct: 119 LERLRRDGQPQVNVGTVEDRLNELRGEQFQTHIDTAGLGTQQVAEQIAAQV-GLTLA 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	100.0
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	100.0
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.73
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.68
2fna_A	357	Conserved hypothetical protein; structural genomic	99.66
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.49
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.48
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.47
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.45
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.42
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.36
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.32
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.1
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.98
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.94
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.87
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.85
3bos_A	242	Putative DNA replication factor; P-loop containing	98.77
3pvs_A	447	Replication-associated recombination protein A; ma	98.72
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.7
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.69
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.67
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.65
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.58
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.57
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.56
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.53
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.52
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.49
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.49
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.49
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.47
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.44
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.43
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.41
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.41
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.36
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.35
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.34
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.33
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.29
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.26
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.23
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.21
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.17
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.13
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.1
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.1
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.1
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.03
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.02
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.01
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.99
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.98
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.95
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.94
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.92
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.92
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.91
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.91
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.9
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.9
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.9
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.9
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.9
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.89
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.88
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.86
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.86
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.86
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.86
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.86
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.85
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.85
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.84
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.84
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.83
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.83
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.82
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.82
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.81
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.81
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.79
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.76
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.75
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.75
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.75
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.74
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.73
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.71
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.7
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.69
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.68
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.67
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.67
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.66
1g6h_A	257	High-affinity branched-chain amino acid transport	97.65
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.65
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.64
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.64
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.63
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.57
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.52
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.52
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.51
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.46
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.44
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.44
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.4
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.37
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.35
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.35
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.34
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.32
2qgz_A	308	Helicase loader, putative primosome component; str	97.32
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.31
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.3
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.3
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.28
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.27
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.26
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.19
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.17
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.15
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.15
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.13
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.13
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.11
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.11
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.08
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.06
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.02
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.99
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.99
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.98
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.91
3io5_A	333	Recombination and repair protein; storage dimer, i	96.87
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.85
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.83
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.83
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.81
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.78
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.76
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.76
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.75
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.74
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.74
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.72
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.7
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.64
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.63
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.62
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.61
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.6
3ice_A	422	Transcription termination factor RHO; transcriptio	96.6
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.6
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.57
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.57
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.57
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.56
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.55
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.54
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.53
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.52
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.51
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.51
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.49
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.49
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.48
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.45
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.44
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.43
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.42
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.41
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.4
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.4
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.4
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.4
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.37
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.36
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.35
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.35
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.34
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.32
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.31
3co5_A	143	Putative two-component system transcriptional RES	96.31
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.29
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.29
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.29
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.29
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.27
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.25
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.23
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.23
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.21
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.2
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.2
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.19
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.19
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.16
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.15
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.13
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.13
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.11
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.09
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.08
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.08
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.08
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.06
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.06
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.03
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.02
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.02
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.01
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.01
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.98
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.98
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.97
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.96
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.93
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.92
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.92
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.92
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.91
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.9
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.9
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.89
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.87
1via_A	175	Shikimate kinase; structural genomics, transferase	95.87
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.86
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.85
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.85
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.82
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.81
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.8
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.79
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.77
2xxa_A	433	Signal recognition particle protein; protein trans	95.76
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.76
2og2_A	359	Putative signal recognition particle receptor; nuc	95.76
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	95.75
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.74
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.74
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.73
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.72
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.69
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.68
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.68
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.68
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.67
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.63
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.63
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.62
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.61
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.6
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.58
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.58
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.58
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.57
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.56
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.55
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.53
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.51
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.51
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.5
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.49
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.47
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.47
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.46
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.45
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.44
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.43
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.42
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.42
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.4
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.4
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.39
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.39
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.38
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.38
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.37
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.37
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.35
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.34
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	95.31
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.3
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.26
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.24
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.23
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.22
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.2
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.18
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.18
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.18
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	95.17
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.16
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.16
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.15
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.13
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.09
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.08
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.03
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.97
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.96
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.94
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.92
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.89
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	94.89
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.87
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.87
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.82
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.78
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.78
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.76
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.76
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	94.76
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.71
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.68
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.62
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.6
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.58
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.58
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.57
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.56
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.56
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.54
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.52
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.5
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.48
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	94.48
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.45
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.44
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	94.44
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.44
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.4
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.4
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.39
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	94.39
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.38
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.36
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.36
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.35
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.3
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	94.26
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.26
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.24
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	94.21
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.21
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.15
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.15
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.14
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	94.1
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.1
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.04
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.0
3end_A	307	Light-independent protochlorophyllide reductase ir	94.0
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.92
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.88
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.82
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.81
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.77
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	93.74
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	93.69
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.68
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.65
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.62
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.6
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.59
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.58
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.55
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.54
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.52
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.51
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.51
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.48
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.47
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.45
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.43
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.4
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.39
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.37
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.36
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.36
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.36
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.34
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.33
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	93.33
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.31
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.3
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	93.3
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.27
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.27
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.26
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.25
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.21
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.18
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.17
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	93.16
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.15
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	93.14
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.13
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	93.12
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.1
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	93.1
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.09
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.08
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	93.03
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.0
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.95
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	92.91
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	92.91
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	92.89
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.88
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.85
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.85
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	92.85
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.83
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	92.83
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.81
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.81
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.8
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.79
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.79
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.77
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.73
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.71
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.69
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	92.69
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.68
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	92.67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	92.63
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.63
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.62
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.61
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.6
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	92.59
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	92.58
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	92.57
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	92.56
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.54
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	92.52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.5
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.5
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	92.47
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	92.46
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.46
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.45
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.43
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.43
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.42
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.41
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.4
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	92.4
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	92.39
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	92.38
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	92.37
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	92.35
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.31
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.29
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	92.28
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.27
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.24
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	92.24
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	92.21
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.19
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	92.18
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	92.17
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.15
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.13
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	92.09
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	92.07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	92.05
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	92.01

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=100.00  E-value=1.1e-47  Score=402.83  Aligned_cols=309  Identities=15%  Similarity=0.135  Sum_probs=240.8

Q ss_pred             cchhHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHh--HhhhcCCCCeEEEEEEcCCC--ChHHHHHHHHHH
Q 044393          156 ETTKSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGN--QLRQEKIFDEVGIATVSQDP--DIINVQSELVKW  228 (513)
Q Consensus       156 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~  228 (513)
                      +||+.++++|..+|..+   ..++|+|+||||+||||||+.+|+  +.....+|++++|+++++.+  +...++..|+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            39999999999999644   568999999999999999999998  45667789999999999885  788999999999


Q ss_pred             hCCCCC--------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhhcC-Ccc
Q 044393          229 LGWELK--------EKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMG-CDT  299 (513)
Q Consensus       229 l~~~~~--------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~~~-~~~  299 (513)
                      ++....        ..+.......+..  .+.+.+|+||||||+|+...+ .+ ...+||+||||||+..++..++ ...
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~--~L~~~kr~LlVLDdv~~~~~~-~~-~~~~gs~ilvTTR~~~v~~~~~~~~~  286 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICN--ALIDRPNTLFVFDDVVQEETI-RW-AQELRLRCLVTTRDVEISNAASQTCE  286 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHH--HHTTSTTEEEEEEEECCHHHH-HH-HHHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred             HhcCcccccccccccccHHHHHHHHHH--HHcCCCcEEEEEECCCCchhh-cc-cccCCCEEEEEcCCHHHHHHcCCCCe
Confidence            986521        1233445666766  555424999999999998755 22 2236999999999999998876 336


Q ss_pred             eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhcccCCcccc
Q 044393          300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGI  379 (513)
Q Consensus       300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~  379 (513)
                      .|+|++|+.++||+||.+.++.....+.+.+++.+|+++|+|+||||+++|+.|+.+.   |..+ +.+.......    
T Consensus       287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~----  358 (549)
T 2a5y_B          287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESR----  358 (549)
T ss_dssp             EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHH----
T ss_pred             EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhcc----
Confidence            7999999999999999999875543467788999999999999999999999998764   4433 3333321100    


Q ss_pred             ccccccccchhhccccCCCCccchHHHh-----------hhcCCCCCCccCHHHHHHHHHhh--ccccccc-HHHHHHHH
Q 044393          380 DKDSLGVYGCLKFSYDYLNGEDSRSCFL-----------LCSLFPEDYKIDLEDLLGYAVGL--VWYQAES-IEKARSLL  445 (513)
Q Consensus       380 ~~~~~~v~~~l~~sy~~L~~~~~k~~~~-----------~~s~fp~~~~i~~~~Li~~w~a~--g~~~~~~-~~~~~~~~  445 (513)
                      .  ...+..+|.+||+.||+ ++|.||+           |||+||+++.|+    +++|+|+  ||+.... .....+.+
T Consensus       359 ~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~  431 (549)
T 2a5y_B          359 G--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA  431 (549)
T ss_dssp             C--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred             c--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence            0  12688899999999998 9999999           999999999999    8899999  9997322 11122333


Q ss_pred             HHHHHHHhHccccceeCC--CCcEEecHHHHHHHHHHhccc
Q 044393          446 RGTIKGLKDSSLLLDIDD--DGFVKMHDIVRDVAIWIGKVE  484 (513)
Q Consensus       446 ~~~l~~L~~~sll~~~~~--~~~~~mH~lv~~~a~~~~~~e  484 (513)
                      . +|++|+++||++....  ..+|+|||+||+||++++.++
T Consensus       432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~  471 (549)
T 2a5y_B          432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ  471 (549)
T ss_dssp             H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred             H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence            3 8999999999997653  357999999999999988654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.3e-39  Score=371.76  Aligned_cols=317  Identities=25%  Similarity=0.355  Sum_probs=251.5

Q ss_pred             CccccccccchhHHHHHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhh-cC-CCCeEEEEEEcCCCC--hHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-EK-IFDEVGIATVSQDPD--IINV  221 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~  221 (513)
                      +|.....|+||+.++++|...|.  .++.++|+|+||||+||||||++++++... .. .++.++|+++++..+  ....
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  198 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK  198 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence            44556679999999999999995  345689999999999999999999988643 23 457788999988543  3445


Q ss_pred             HHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHhcc-CCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhh-
Q 044393          222 QSELVKWLGWELK-----EKDEEERADRLRLMFSESK-GRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDR-  294 (513)
Q Consensus       222 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~~~l~~-~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~-  294 (513)
                      +..++..+.....     ..........++.  .+.+ ++|+||||||+|+...+..+   .+|++||||||++.++.. 
T Consensus       199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~LlvlDd~~~~~~~~~~---~~~~~ilvTtR~~~~~~~~  273 (1249)
T 3sfz_A          199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRV--LMLRKHPRSLLILDDVWDPWVLKAF---DNQCQILLTTRDKSVTDSV  273 (1249)
T ss_dssp             HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHH--HTSSSSCSCEEEEESCCCHHHHTTT---CSSCEEEEEESSTTTTTTC
T ss_pred             HHHHHHHhhhhcccccCCCCCHHHHHHHHHH--HHhccCCCEEEEEecCCCHHHHHhh---cCCCEEEEEcCCHHHHHhh
Confidence            6677777765321     2345666777776  3433 24999999999998777765   459999999999988854 


Q ss_pred             cCCcceeecCC-CChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhccc
Q 044393          295 MGCDTRIKLDA-LDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKL  373 (513)
Q Consensus       295 ~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~  373 (513)
                      ......+++.+ |+.+++++||...++..  .+...+.+++|+++|+|+||||+++|++|+.++ ..|..+++.+.....
T Consensus       274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~  350 (1249)
T 3sfz_A          274 MGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF  350 (1249)
T ss_dssp             CSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred             cCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence            44557899996 99999999999988643  334467799999999999999999999998765 479999999987654


Q ss_pred             CCcccccc-ccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHH
Q 044393          374 DKIEGIDK-DSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGL  452 (513)
Q Consensus       374 ~~~~~~~~-~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L  452 (513)
                      ..+..... ...++..+|.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.+++           +.+..+|++|
T Consensus       351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----------~~~~~~l~~L  418 (1249)
T 3sfz_A          351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----------EEVEDILQEF  418 (1249)
T ss_dssp             CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----------HHHHHHHHHH
T ss_pred             hhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----------HHHHHHHHHH
Confidence            44433222 123689999999999999 9999999999999999999999999997653           4456689999


Q ss_pred             hHccccceeCCCC--cEEecHHHHHHHHHHhccc
Q 044393          453 KDSSLLLDIDDDG--FVKMHDIVRDVAIWIGKVE  484 (513)
Q Consensus       453 ~~~sll~~~~~~~--~~~mH~lv~~~a~~~~~~e  484 (513)
                      +++||++....++  +|+||++||+|++.++.++
T Consensus       419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            9999998665333  5999999999999997654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=100.00  E-value=4e-40  Score=350.57  Aligned_cols=284  Identities=19%  Similarity=0.179  Sum_probs=224.7

Q ss_pred             ccchhHHHHHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe-EEEEEEcCCCChHHHHHHHHHHhCCC
Q 044393          155 FETTKSACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE-VGIATVSQDPDIINVQSELVKWLGWE  232 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~  232 (513)
                      .+||+.+++.|..+|.. +..++|+|+||||+||||||+.++++.+...+|+. ++|+++++.++...++..+++.++..
T Consensus       130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i  209 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI  209 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence            48999999999999875 45689999999999999999999988766667986 99999999998888877777653221


Q ss_pred             ---CC---C------CCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhhcCCcce
Q 044393          233 ---LK---E------KDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCDTR  300 (513)
Q Consensus       233 ---~~---~------~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~~~~~~~  300 (513)
                         ..   .      ...+.....++.++....++++||||||+|+...|..+.   +||+||||||++.++..+.....
T Consensus       210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---pGSRILVTTRd~~Va~~l~g~~v  286 (1221)
T 1vt4_I          210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATT  286 (1221)
T ss_dssp             CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---SSCCEEEECSCSHHHHHHHHHSS
T ss_pred             CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---CCeEEEEeccChHHHHhcCCCeE
Confidence               10   0      012344556666443345699999999999988777653   69999999999988764433335


Q ss_pred             eecC------CCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCC--ChHHHHHHHHHHhhcc
Q 044393          301 IKLD------ALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGR--NADEWNVALDKLQNAK  372 (513)
Q Consensus       301 ~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~--~~~~w~~~l~~l~~~~  372 (513)
                      +.++      +|+.+||++||.+..+..  .   .++..+   .|+|+||||.++|+.|+.+  +...|...        
T Consensus       287 y~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------  350 (1221)
T 1vt4_I          287 THISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV--------  350 (1221)
T ss_dssp             CEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------
T ss_pred             EEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------
Confidence            6666      899999999999986532  1   233333   3999999999999999976  56777642        


Q ss_pred             cCCccccccccccccchhhccccCCCCccc-hHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Q 044393          373 LDKIEGIDKDSLGVYGCLKFSYDYLNGEDS-RSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKG  451 (513)
Q Consensus       373 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~  451 (513)
                        .       ...+..+|.+||+.||+ +. |.||++||+||+++.|+.+.++.+|+++|          .+.+..+|++
T Consensus       351 --~-------~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~e  410 (1221)
T 1vt4_I          351 --N-------CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNK  410 (1221)
T ss_dssp             --S-------CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHH
T ss_pred             --C-------hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHH
Confidence              0       12688999999999999 88 99999999999999999999999999887          1235668999


Q ss_pred             HhHccccceeCCCCcEEecHHHHHHH
Q 044393          452 LKDSSLLLDIDDDGFVKMHDIVRDVA  477 (513)
Q Consensus       452 L~~~sll~~~~~~~~~~mH~lv~~~a  477 (513)
                      |+++||++..+..++|+||||+++++
T Consensus       411 LvdRSLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          411 LHKYSLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             HHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred             HHhhCCEEEeCCCCEEEehHHHHHHh
Confidence            99999999754557899999999965

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=100.00  E-value=8.5e-37  Score=324.42  Aligned_cols=312  Identities=25%  Similarity=0.364  Sum_probs=236.2

Q ss_pred             ccccccccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhhh-cCCC-CeEEEEEEcCCCChHHHH--
Q 044393          149 PRFFSSFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ-EKIF-DEVGIATVSQDPDIINVQ--  222 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~--  222 (513)
                      |.....|+||+.+++.|...+..  ++.++|+|+||||+||||||..++++... ..+| +.++|++++... ...++  
T Consensus       120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~  198 (591)
T 1z6t_A          120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMK  198 (591)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHH
T ss_pred             CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHH
Confidence            34456799999999999999963  45689999999999999999999987654 4568 589999998763 33333  


Q ss_pred             -HHHHHHhCCC-----CCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhhcC
Q 044393          223 -SELVKWLGWE-----LKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       223 -~~i~~~l~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~~~  296 (513)
                       ..++..++..     ....+.......+...+.-. .+++||||||+|+...+..+   .++++||||||+..++..+.
T Consensus       199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~LLVLDdv~~~~~l~~l---~~~~~ilvTsR~~~~~~~~~  274 (591)
T 1z6t_A          199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRK-HPRSLLILDDVWDSWVLKAF---DSQCQILLTTRDKSVTDSVM  274 (591)
T ss_dssp             HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHT-CTTCEEEEEEECCHHHHHTT---CSSCEEEEEESCGGGGTTCC
T ss_pred             HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccC-CCCeEEEEeCCCCHHHHHHh---cCCCeEEEECCCcHHHHhcC
Confidence             3344455521     12234455666666633222 27899999999987666544   34899999999998876543


Q ss_pred             Ccceeec---CCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhccc
Q 044393          297 CDTRIKL---DALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKL  373 (513)
Q Consensus       297 ~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~  373 (513)
                       ...+++   ++|+.+++++||...++..  .....+.+.+|+++|+|+||||.++|++++.+. ..|..+++.+.....
T Consensus       275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~  350 (591)
T 1z6t_A          275 -GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF  350 (591)
T ss_dssp             -SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCC
T ss_pred             -CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHH
Confidence             233443   5899999999999988742  222346789999999999999999999998763 369999998887543


Q ss_pred             CCcccc-ccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcccccccHHHHHHHHHHHHHHH
Q 044393          374 DKIEGI-DKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVWYQAESIEKARSLLRGTIKGL  452 (513)
Q Consensus       374 ~~~~~~-~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L  452 (513)
                      ..+... .....++..++..||+.||+ +.|.||++||+||+++.|+.+.+..+|.+++           +.+..+|++|
T Consensus       351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----------~~~~~~l~~L  418 (591)
T 1z6t_A          351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET-----------EEVEDILQEF  418 (591)
T ss_dssp             CCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----------HHHHHHHHHH
T ss_pred             HHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH-----------HHHHHHHHHH
Confidence            333221 11223688999999999998 8999999999999999999999999996542           2345689999


Q ss_pred             hHccccceeCCC--CcEEecHHHHHHHHHHh
Q 044393          453 KDSSLLLDIDDD--GFVKMHDIVRDVAIWIG  481 (513)
Q Consensus       453 ~~~sll~~~~~~--~~~~mH~lv~~~a~~~~  481 (513)
                      +++||++...++  .+|+||++||+|++...
T Consensus       419 ~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          419 VNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             HhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            999999854322  37999999999999884

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.73  E-value=4.8e-16  Score=153.43  Aligned_cols=284  Identities=14%  Similarity=0.073  Sum_probs=173.1

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC------ChHHHHHH
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP------DIINVQSE  224 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~  224 (513)
                      ....|+||+.+++.|..++..+  +++.|+|++|+|||||++.+++...       .+|+.+....      +...++..
T Consensus        10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   80 (350)
T 2qen_A           10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE   80 (350)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred             ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence            3456889999999999999876  8999999999999999999987751       5566654332      45556666


Q ss_pred             HHHHhCC-----------------CC--CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------cccc---
Q 044393          225 LVKWLGW-----------------EL--KEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETV---  273 (513)
Q Consensus       225 i~~~l~~-----------------~~--~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l---  273 (513)
                      +.+.+..                 ..  ...........+..  .....++.+|||||++....         +..+   
T Consensus        81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~  158 (350)
T 2qen_A           81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELND--LGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA  158 (350)
T ss_dssp             HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHH--HHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHH--HHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence            6655432                 00  01223333344433  22211389999999976432         1111   


Q ss_pred             ccCCCCcEEEEEeCchHHHhh----------c--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCC
Q 044393          274 GIPANCCKILLTTRLQQVCDR----------M--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKG  341 (513)
Q Consensus       274 ~~~~~~~~iivTtr~~~v~~~----------~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G  341 (513)
                      ....++.++|+|++.......          +  .....+++.+|+.+|+.+++...+....... ..+.+..|++.|+|
T Consensus       159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG  237 (350)
T 2qen_A          159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDG  237 (350)
T ss_dssp             HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTT
T ss_pred             HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCC
Confidence            111247899999887643221          1  1124799999999999999987653211111 25678899999999


Q ss_pred             CchHHHHHHHHhcC-CChHHH-HHHHHHHhhcccCCccccccccccccchhhccccCC---CCccchHHHhhhcCCCCCC
Q 044393          342 LPLAIKVVGSALTG-RNADEW-NVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYL---NGEDSRSCFLLCSLFPEDY  416 (513)
Q Consensus       342 ~PLai~~~~~~l~~-~~~~~w-~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L---~~~~~k~~~~~~s~fp~~~  416 (513)
                      +|+++..++..+.. .+...+ ....+...                  ..+...+..+   ++ ..+.++..+|.  .. 
T Consensus       238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~l~~~~~-~~~~~l~~la~--g~-  295 (350)
T 2qen_A          238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAK------------------GLIMGELEELRRRSP-RYVDILRAIAL--GY-  295 (350)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHCH-HHHHHHHHHHT--TC-
T ss_pred             CHHHHHHHHHHHhccccHhHHHHHHHHHHH------------------HHHHHHHHHHHhCCh-hHHHHHHHHHh--CC-
Confidence            99999998876432 222211 11111110                  0011111122   55 78899998887  22 


Q ss_pred             ccCHHHHHHHHHh-hcccccccHHHHHHHHHHHHHHHhHccccceeCCCCcEEe-cHHHHHHHH
Q 044393          417 KIDLEDLLGYAVG-LVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVKM-HDIVRDVAI  478 (513)
Q Consensus       417 ~i~~~~Li~~w~a-~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~m-H~lv~~~a~  478 (513)
                       .....+....-. .|   ..    .......+++.|.+.+||...+  +.|++ |++++++.+
T Consensus       296 -~~~~~l~~~~~~~~~---~~----~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~  349 (350)
T 2qen_A          296 -NRWSLIRDYLAVKGT---KI----PEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR  349 (350)
T ss_dssp             -CSHHHHHHHHHHTTC---CC----CHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence             344444433211 10   00    1233456899999999997653  55654 889988764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.68  E-value=3.6e-15  Score=150.69  Aligned_cols=301  Identities=17%  Similarity=0.133  Sum_probs=179.3

Q ss_pred             ccccchhHHHHHHHHHH-h----c--CCccEEEE--EcCCCChHHHHHHHHHhHhhhc---CCCC-eEEEEEEcCCCChH
Q 044393          153 SSFETTKSACNQITEAL-K----K--GSTKMVGL--HGLGGVGKTTLAKFVGNQLRQE---KIFD-EVGIATVSQDPDII  219 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~G~GKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~  219 (513)
                      ..++||+.+++.|...+ .    .  +....+.|  +|++|+|||||++.+++.....   ..+. .++|+.+....+..
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY  101 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence            56889999999998887 3    2  23467777  9999999999999999887542   1122 35677766777888


Q ss_pred             HHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--------cccc---c--cC--C--CCc
Q 044393          220 NVQSELVKWLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKELD--------LETV---G--IP--A--NCC  280 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--------~~~l---~--~~--~--~~~  280 (513)
                      .++..++..++...+  ..+.......+...+.. .+++++|||||++....        +..+   .  .+  .  .+.
T Consensus       102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v  180 (412)
T 1w5s_A          102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYV-ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI  180 (412)
T ss_dssp             HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH-HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence            999999999876543  22344555555553332 24899999999976321        2111   1  11  1  244


Q ss_pred             EEEEEeCchHHHhhc--------C-CcceeecCCCChHhHHHHHHHhcCCC-CCCCchHHHHHHHHHHhC------CCch
Q 044393          281 KILLTTRLQQVCDRM--------G-CDTRIKLDALDQAEGLDLLREHAGID-VADTTLTDVSKRVADECK------GLPL  344 (513)
Q Consensus       281 ~iivTtr~~~v~~~~--------~-~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~------G~PL  344 (513)
                      .+|+||+...+...+        . ....+.+.+|+.++++++|...+... .......+....|++.|+      |+|.
T Consensus       181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~  260 (412)
T 1w5s_A          181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR  260 (412)
T ss_dssp             EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred             EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence            588888765432111        1 12339999999999999997654310 011122567889999999      9997


Q ss_pred             HHHHHHHHhc------CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCC--
Q 044393          345 AIKVVGSALT------GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFP--  413 (513)
Q Consensus       345 ai~~~~~~l~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp--  413 (513)
                      .+..+.....      +.   +...+..++.....                ...+..++..||+ +.+.++..++.+.  
T Consensus       261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~----------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~  323 (412)
T 1w5s_A          261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA----------------ASIQTHELEALSI-HELIILRLIAEATLG  323 (412)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------------CCSSSSSCH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----------------cchHHHHHHcCCH-HHHHHHHHHHHHHhc
Confidence            6655543221      11   22333333322100                1235567788998 8899988888653  


Q ss_pred             CCCccCHHHHHHHHHhh--cccccccHHHHHHHHHHHHHHHhHccccceeC----CCCcEEecHHH
Q 044393          414 EDYKIDLEDLLGYAVGL--VWYQAESIEKARSLLRGTIKGLKDSSLLLDID----DDGFVKMHDIV  473 (513)
Q Consensus       414 ~~~~i~~~~Li~~w~a~--g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~----~~~~~~mH~lv  473 (513)
                      .+..+....+...+...  ........  ....+..+++.|.+.+||....    ..++|++|.+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~  387 (412)
T 1w5s_A          324 GMEWINAGLLRQRYEDASLTMYNVKPR--GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA  387 (412)
T ss_dssp             TCSSBCHHHHHHHHHHHHHHHSCCCCC--CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred             CCCCccHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence            23356555555443211  11110000  1233456799999999997543    23445555443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.66  E-value=5.2e-15  Score=146.34  Aligned_cols=281  Identities=13%  Similarity=0.069  Sum_probs=166.3

Q ss_pred             cccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-----CChHHHHHHHH
Q 044393          152 FSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-----PDIINVQSELV  226 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~  226 (513)
                      ...|+||+.+++.|.. +..   +++.|+|++|+|||||++.+++....     ..+|+.+...     .+....+..+.
T Consensus        12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~   82 (357)
T 2fna_A           12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQ   82 (357)
T ss_dssp             GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred             HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHH
Confidence            4568899999999999 765   69999999999999999999987642     2467776542     23344444443


Q ss_pred             HHhC--------------C----CCC------------CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----ccc
Q 044393          227 KWLG--------------W----ELK------------EKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----DLE  271 (513)
Q Consensus       227 ~~l~--------------~----~~~------------~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----~~~  271 (513)
                      +.+.              .    ..+            ..........+.   .... ++++|||||++...     ++.
T Consensus        83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~-~~~vlvlDe~~~~~~~~~~~~~  158 (357)
T 2fna_A           83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFE---QASK-DNVIIVLDEAQELVKLRGVNLL  158 (357)
T ss_dssp             HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHH---HTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred             HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHH---hcCC-CCeEEEEECHHHhhccCchhHH
Confidence            3321              0    000            111222222222   2222 48999999997643     221


Q ss_pred             cc----ccCCCCcEEEEEeCchHHHhh----------cC-C-cceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHH
Q 044393          272 TV----GIPANCCKILLTTRLQQVCDR----------MG-C-DTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKR  334 (513)
Q Consensus       272 ~l----~~~~~~~~iivTtr~~~v~~~----------~~-~-~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~  334 (513)
                      .+    ....++.++|+|++.......          +. . ...+.+.+|+.+++.+++...+.. ......   . ..
T Consensus       159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~  234 (357)
T 2fna_A          159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EV  234 (357)
T ss_dssp             HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HH
T ss_pred             HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HH
Confidence            11    111237899999997653221          11 1 257899999999999999876531 111122   1 78


Q ss_pred             HHHHhCCCchHHHHHHHHhcC-CChHHHHH-HHHHHhhcccCCccccccccccccchhh-ccc--cCCCCccchHHHhhh
Q 044393          335 VADECKGLPLAIKVVGSALTG-RNADEWNV-ALDKLQNAKLDKIEGIDKDSLGVYGCLK-FSY--DYLNGEDSRSCFLLC  409 (513)
Q Consensus       335 i~~~~~G~PLai~~~~~~l~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~~~~v~~~l~-~sy--~~L~~~~~k~~~~~~  409 (513)
                      |++.|+|+|+++..++..+.. .+...|.. +.+....              .+...+. +.+  ..||+ ..+..+..+
T Consensus       235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~l~~-~~~~~l~~l  299 (357)
T 2fna_A          235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK--------------LILKEFENFLHGREIARK-RYLNIMRTL  299 (357)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------HHHHHHHHHHTTCGGGHH-HHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH--------------HHHHHHHHHhhccccccH-HHHHHHHHH
Confidence            999999999999999877642 23222211 1111100              0111111 111  15777 889999999


Q ss_pred             cCCCCCCccCHHHHHHHHH-hhcccccccHHHHHHHHHHHHHHHhHccccceeCCCCcEE-ecHHHHHHH
Q 044393          410 SLFPEDYKIDLEDLLGYAV-GLVWYQAESIEKARSLLRGTIKGLKDSSLLLDIDDDGFVK-MHDIVRDVA  477 (513)
Q Consensus       410 s~fp~~~~i~~~~Li~~w~-a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~-mH~lv~~~a  477 (513)
                      |.   +.  +...+....- ..|.  ..    .......+++.|.+.+||...+  +.|+ .|++++++.
T Consensus       300 a~---g~--~~~~l~~~~~~~~g~--~~----~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l  356 (357)
T 2fna_A          300 SK---CG--KWSDVKRALELEEGI--EI----SDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF  356 (357)
T ss_dssp             TT---CB--CHHHHHHHHHHHHCS--CC----CHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred             Hc---CC--CHHHHHHHHHHhcCC--CC----CHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence            98   21  4444432110 1110  00    1234456899999999997653  5676 589999874

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.49  E-value=1.9e-13  Score=110.38  Aligned_cols=80  Identities=14%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHH
Q 044393            3 ILAGIASKLGELLVDATVKQARYLFCFNSIVKELEDKETNLKEAQDGIHERVEQERQIHRA-IDIEKDVEKWLADVVKEM   81 (513)
Q Consensus         3 v~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~l~~a~~~~~~-~~~~~~v~~Wl~~v~~~~   81 (513)
                      +++++++|+++++.+++..           +.++++++++|+++|..|+++|.+|+  .+. ...+++++.|+++||+++
T Consensus         2 ~v~~ll~KL~~ll~~E~~l-----------~~gv~~~i~~Lk~eL~~m~a~L~da~--~~~~~~~d~~vk~W~~~vrdla   68 (115)
T 3qfl_A            2 AISNLIPKLGELLTEEFKL-----------HKGVKKNIEDLGKELESMNAALIKIG--EVPREQLDSQDKLWADEVRELS   68 (115)
T ss_dssp             TTCSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHH-----------HhchHHHHHHHHHHHHHHHHHHHHHH--HhccccCCHHHHHHHHHHHHHH
Confidence            6788999999999999865           47899999999999999999999998  432 357899999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 044393           82 ADVQTLKTKIAEKK   95 (513)
Q Consensus        82 ~d~ed~~d~~~~~~   95 (513)
                      ||+|||+|+|.+..
T Consensus        69 YD~ED~iD~f~~~~   82 (115)
T 3qfl_A           69 YVIEDVVDKFLVQV   82 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999997653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.48  E-value=1.2e-12  Score=130.77  Aligned_cols=286  Identities=15%  Similarity=0.101  Sum_probs=170.7

Q ss_pred             ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCC-CCeEEEEEEcCCCChHHHHHHHHH
Q 044393          153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI-FDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      ..++||+.+++.|..++..    +....+.|+|++|+|||||++.+++....... -...+|+++....+...++..++.
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~   99 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE   99 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999988863    44578999999999999999999998765421 234567776666677778888877


Q ss_pred             HhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccc--c---CCCCcEEEEEeCchHHHhh
Q 044393          228 WLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVG--I---PANCCKILLTTRLQQVCDR  294 (513)
Q Consensus       228 ~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~--~---~~~~~~iivTtr~~~v~~~  294 (513)
                      .++....  ..+.......+...+.. .+++.+|||||++...+      +..+.  .   ...+..+|+||+.......
T Consensus       100 ~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~  178 (386)
T 2qby_A          100 SLDVKVPFTGLSIAELYRRLVKAVRD-YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL  178 (386)
T ss_dssp             TTSCCCCSSSCCHHHHHHHHHHHHHT-CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred             HhCCCCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence            7765432  22344445555553332 23689999999966421      22221  1   2226778888887643222


Q ss_pred             cC-------CcceeecCCCChHhHHHHHHHhcCCC-CCCCchHHHHHHHHHHhC---CCchHHHHHHHHh-c-----CC-
Q 044393          295 MG-------CDTRIKLDALDQAEGLDLLREHAGID-VADTTLTDVSKRVADECK---GLPLAIKVVGSAL-T-----GR-  356 (513)
Q Consensus       295 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~---G~PLai~~~~~~l-~-----~~-  356 (513)
                      +.       ....+.+.+++.++..+++...+... ....-..+....+++.++   |.|..+..+.... .     +. 
T Consensus       179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~  258 (386)
T 2qby_A          179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT  258 (386)
T ss_dssp             CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence            21       11579999999999999998765310 011223567788888888   9998444333222 1     11 


Q ss_pred             --ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcC-CCCC-CccCHHHHHHHH--Hhh
Q 044393          357 --NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSL-FPED-YKIDLEDLLGYA--VGL  430 (513)
Q Consensus       357 --~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~-fp~~-~~i~~~~Li~~w--~a~  430 (513)
                        +.+.+..++..+..                 ..+.-++..||+ ..+..+..++. +-.+ ..+....+.+..  +++
T Consensus       259 ~i~~~~v~~a~~~~~~-----------------~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~  320 (386)
T 2qby_A          259 KVKEEYVYMAKEEIER-----------------DRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICK  320 (386)
T ss_dssp             SCCHHHHHHHHHHHHH-----------------HHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHhh-----------------chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence              44555555544321                 124555677887 66666665552 2111 223343333221  111


Q ss_pred             cc-cccccHHHHHHHHHHHHHHHhHcccccee
Q 044393          431 VW-YQAESIEKARSLLRGTIKGLKDSSLLLDI  461 (513)
Q Consensus       431 g~-~~~~~~~~~~~~~~~~l~~L~~~sll~~~  461 (513)
                      .. +...    ....+..+++.|...|++...
T Consensus       321 ~~g~~~~----~~~~~~~~l~~L~~~gli~~~  348 (386)
T 2qby_A          321 KLGVEAV----TQRRVSDIINELDMVGILTAK  348 (386)
T ss_dssp             HHTCCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             hcCCCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence            10 1111    123455689999999999753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.47  E-value=1.1e-11  Score=123.98  Aligned_cols=284  Identities=13%  Similarity=0.078  Sum_probs=177.1

Q ss_pred             ccccchhHHHHHHHHHHhc----CCcc--EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          153 SSFETTKSACNQITEALKK----GSTK--MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      ..++||+.+++.+..++..    +...  .+.|+|++|+|||||++.+++...... -...++++++...+...++..++
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~   95 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA   95 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence            4578999999999888854    2334  899999999999999999998876532 12456677677777888999999


Q ss_pred             HHhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccc---c--CC---CCcEEEEEeCchHHHhh
Q 044393          227 KWLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVG---I--PA---NCCKILLTTRLQQVCDR  294 (513)
Q Consensus       227 ~~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~---~--~~---~~~~iivTtr~~~v~~~  294 (513)
                      ..++....  ..+.......+...+.. .+++.+|+|||++...  .+..+.   .  ..   .+..+|+||+...+...
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~  174 (389)
T 1fnn_A           96 RSLNIPFPRRGLSRDEFLALLVEHLRE-RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN  174 (389)
T ss_dssp             HHTTCCCCSSCCCHHHHHHHHHHHHHH-TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred             HHhCccCCCCCCCHHHHHHHHHHHHhh-cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence            88876433  22345555555553333 2478999999997652  122221   1  11   36788888887644332


Q ss_pred             cC-------CcceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHHHHHHh---------CCCchHHHHHHHHhc---
Q 044393          295 MG-------CDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADEC---------KGLPLAIKVVGSALT---  354 (513)
Q Consensus       295 ~~-------~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~G~PLai~~~~~~l~---  354 (513)
                      +.       ....+.+.+++.++..+++...+.. .....-.++....+++.+         +|.|..+..+.....   
T Consensus       175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a  254 (389)
T 1fnn_A          175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA  254 (389)
T ss_dssp             SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred             hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence            21       1136999999999999999887642 001122357788999999         798865544433221   


Q ss_pred             ---CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCC---CCCccCHHHHHH
Q 044393          355 ---GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFP---EDYKIDLEDLLG  425 (513)
Q Consensus       355 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp---~~~~i~~~~Li~  425 (513)
                         +.   +.+....+.....                 ...+.-.+..||+ +.+.++..++.+.   .+..+....+..
T Consensus       255 ~~~~~~~i~~~~v~~~~~~~~-----------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~  316 (389)
T 1fnn_A          255 QQNGRKHIAPEDVRKSSKEVL-----------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEE  316 (389)
T ss_dssp             HHTTCSSCCHHHHHHHHHHHS-----------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred             HHhCCCCcCHHHHHHHHHHHh-----------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence               11   2233333332211                 1123445667887 7788777776543   221455566655


Q ss_pred             HHHh----hcccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393          426 YAVG----LVWYQAESIEKARSLLRGTIKGLKDSSLLLDI  461 (513)
Q Consensus       426 ~w~a----~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~  461 (513)
                      .+-.    .|. ..-    ......++++.|...++|...
T Consensus       317 ~~~~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~  351 (389)
T 1fnn_A          317 SYKIVCEEYGE-RPR----VHSQLWSYLNDLREKGIVETR  351 (389)
T ss_dssp             HHHHHHHHTTC-CCC----CHHHHHHHHHHHHHTTSSEEE
T ss_pred             HHHHHHHHcCC-CCC----CHHHHHHHHHHHHhCCCeEEe
Confidence            4422    111 111    123456689999999999864

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.45  E-value=8.2e-12  Score=124.70  Aligned_cols=280  Identities=13%  Similarity=0.068  Sum_probs=170.2

Q ss_pred             ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhcC-----C-CCeEEEEEEcCCC-ChHHH
Q 044393          153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-----I-FDEVGIATVSQDP-DIINV  221 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-----~-f~~~~wv~~~~~~-~~~~~  221 (513)
                      ..++||+.+++.+..++..    +..+.+.|+|++|+||||||+.+++......     . ....+|+++.... +...+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   99 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV   99 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence            5578999999988877643    3457899999999999999999998874421     1 2345677776666 78888


Q ss_pred             HHHHHHHh-CCCC--CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------ccccccCCCCcEEEEEeCchHH
Q 044393          222 QSELVKWL-GWEL--KEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------LETVGIPANCCKILLTTRLQQV  291 (513)
Q Consensus       222 ~~~i~~~l-~~~~--~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------~~~l~~~~~~~~iivTtr~~~v  291 (513)
                      +..++..+ +...  ...+.......+..  .+.. ++.+|||||++....       +..+.....+..+|+||+....
T Consensus       100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~  176 (384)
T 2qby_B          100 LSSLAGKLTGFSVPKHGINLGEYIDKIKN--GTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV  176 (384)
T ss_dssp             HHHHHHHHHCSCCCSSSSCTHHHHHHHHH--HHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHH--Hhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence            88888877 3222  12223444555554  4444 444999999965421       2222211257889999987532


Q ss_pred             --------HhhcCCcceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHHHHHHhC---CCch-HHHHHHHHh--c-C
Q 044393          292 --------CDRMGCDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADECK---GLPL-AIKVVGSAL--T-G  355 (513)
Q Consensus       292 --------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---G~PL-ai~~~~~~l--~-~  355 (513)
                              ...+  ...+.+.+++.++..++|...+.. -....-.++..+.+++.|+   |.|. ++..+-...  . +
T Consensus       177 ~~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~  254 (384)
T 2qby_B          177 RDYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG  254 (384)
T ss_dssp             TTTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred             HhhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence                    1211  238999999999999999987531 0011122466788889998   9887 333333322  1 1


Q ss_pred             ---CChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhcCCCCCCccCHHHHHHHHHhhcc
Q 044393          356 ---RNADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCSLFPEDYKIDLEDLLGYAVGLVW  432 (513)
Q Consensus       356 ---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s~fp~~~~i~~~~Li~~w~a~g~  432 (513)
                         -+.+.+..++.....                 ..+..++..|++ +.+..+..++....+..+. .......-..| 
T Consensus       255 ~~~i~~~~v~~~~~~~~~-----------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-  314 (384)
T 2qby_B          255 GGIIRKEHVDKAIVDYEQ-----------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-  314 (384)
T ss_dssp             SSCCCHHHHHHHHHHHHH-----------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-
T ss_pred             CCccCHHHHHHHHHHHhc-----------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-
Confidence               256667766665422                 125566778887 7777776666511100111 01111111112 


Q ss_pred             cccccHHHHHHHHHHHHHHHhHcccccee
Q 044393          433 YQAESIEKARSLLRGTIKGLKDSSLLLDI  461 (513)
Q Consensus       433 ~~~~~~~~~~~~~~~~l~~L~~~sll~~~  461 (513)
                      ....    ......++++.|...|++...
T Consensus       315 ~~~~----~~~~~~~~l~~L~~~gli~~~  339 (384)
T 2qby_B          315 QKPL----SYRRFSDIISELDMFGIVKIR  339 (384)
T ss_dssp             CCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence            1111    124456689999999999853

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.42  E-value=1.1e-11  Score=123.78  Aligned_cols=284  Identities=15%  Similarity=0.084  Sum_probs=174.5

Q ss_pred             ccccchhHHHHHHHHHHhc----CCccEEEEEcCCCChHHHHHHHHHhHhhhc----CCCCeEEEEEEcCCCChHHHHHH
Q 044393          153 SSFETTKSACNQITEALKK----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQE----KIFDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      ..++||+.+++.+..++..    +....+.|+|++|+||||||+.+++.....    ..-...+|+++....+...++..
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   98 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA   98 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence            5578999999999998843    345789999999999999999999887542    11123567777777788889999


Q ss_pred             HHHHhCCCCCC--CCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------ccccc-cC-----CCCcEEEEEeCch
Q 044393          225 LVKWLGWELKE--KDEEERADRLRLMFSESKGRKILIILDDVWKELD-------LETVG-IP-----ANCCKILLTTRLQ  289 (513)
Q Consensus       225 i~~~l~~~~~~--~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------~~~l~-~~-----~~~~~iivTtr~~  289 (513)
                      ++..++...+.  .+.......+...+. ..+++.+|+|||++....       +..+. ..     ..+..+|+||+..
T Consensus        99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~  177 (387)
T 2v1u_A           99 IAEAVGVRVPFTGLSVGEVYERLVKRLS-RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL  177 (387)
T ss_dssp             HHHHHSCCCCSSCCCHHHHHHHHHHHHT-TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence            99998764332  234454555555222 234789999999976432       11111 11     2366888888765


Q ss_pred             HH--------HhhcCCcceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHHHHHHhC---CCchHH-HHHHHHhc--
Q 044393          290 QV--------CDRMGCDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADECK---GLPLAI-KVVGSALT--  354 (513)
Q Consensus       290 ~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---G~PLai-~~~~~~l~--  354 (513)
                      ..        ...+. ...+.+.+++.++..+++...+.. .....-.++..+.+++.++   |.|..+ ..+.....  
T Consensus       178 ~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a  256 (387)
T 2v1u_A          178 GFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA  256 (387)
T ss_dssp             TTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred             chHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            22        22221 147999999999999999887531 0011112356778888888   999433 33222221  


Q ss_pred             ---CC---ChHHHHHHHHHHhhcccCCccccccccccccchhhccccCCCCccchHHHhhhc-CCCCCCccCHHHHHHHH
Q 044393          355 ---GR---NADEWNVALDKLQNAKLDKIEGIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLCS-LFPEDYKIDLEDLLGYA  427 (513)
Q Consensus       355 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~s-~fp~~~~i~~~~Li~~w  427 (513)
                         +.   +.+.+..++.....                 ..+.-++..||+ +.+..+..++ ++.+...+....+.+..
T Consensus       257 ~~~~~~~i~~~~v~~a~~~~~~-----------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~  318 (387)
T 2v1u_A          257 ERRREERVRREHVYSARAEIER-----------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERY  318 (387)
T ss_dssp             HHTTCSCBCHHHHHHHHHHHHH-----------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred             HHcCCCCcCHHHHHHHHHHHhh-----------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence               11   45566666554322                 124556778887 6666666554 44332345555444432


Q ss_pred             Hh----hcccccccHHHHHHHHHHHHHHHhHcccccee
Q 044393          428 VG----LVWYQAESIEKARSLLRGTIKGLKDSSLLLDI  461 (513)
Q Consensus       428 ~a----~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~  461 (513)
                      ..    .| ....    ....+..+++.|...|++...
T Consensus       319 ~~~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~  351 (387)
T 2v1u_A          319 KELTSTLG-LEHV----TLRRVSGIISELDMLGIVKSR  351 (387)
T ss_dssp             HHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEE
Confidence            11    12 1111    124456689999999999863

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.36  E-value=1.6e-11  Score=114.05  Aligned_cols=197  Identities=18%  Similarity=0.155  Sum_probs=115.5

Q ss_pred             ccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      |..+..++|++..++.|..++..+. .+.+.|+|++|+|||||++.+++.......+...      ....... ...+..
T Consensus        19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~   91 (250)
T 1njg_A           19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIEQ   91 (250)
T ss_dssp             CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHHT
T ss_pred             CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHhc
Confidence            4455678999999999999997764 3589999999999999999999877543211000      0000000 000000


Q ss_pred             HhCC-----CCCC-CCHHHHHHHHHHHH-HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCchHH-Hh
Q 044393          228 WLGW-----ELKE-KDEEERADRLRLMF-SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRLQQV-CD  293 (513)
Q Consensus       228 ~l~~-----~~~~-~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~~~v-~~  293 (513)
                      ....     .... .........+..+. ....+++.+||+||++...  .+..+    .....+..+|+||+.... ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~  171 (250)
T 1njg_A           92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV  171 (250)
T ss_dssp             TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred             cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence            0000     0000 01111111111100 0123478999999996632  22222    122337888888876432 11


Q ss_pred             h-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          294 R-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       294 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      . ......+.+.+++.++..+++...+..... ...++....|++.|+|+|..+..+...+
T Consensus       172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~  231 (250)
T 1njg_A          172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA  231 (250)
T ss_dssp             HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            1 122368999999999999999987743211 2225678899999999999888776543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.32  E-value=5.7e-11  Score=108.68  Aligned_cols=185  Identities=12%  Similarity=0.063  Sum_probs=114.9

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .|..+..++|++..++.+..++..+..+.+.|+|++|+|||+||+.+++.......-...+.+..+.......+...+..
T Consensus        12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (226)
T 2chg_A           12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE   91 (226)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred             CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHH
Confidence            34556678899999999999998776556999999999999999999987643311122233333332222221111111


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--cccc---c-cCCCCcEEEEEeCchHH-Hh-hcCCcc
Q 044393          228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LETV---G-IPANCCKILLTTRLQQV-CD-RMGCDT  299 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~~l---~-~~~~~~~iivTtr~~~v-~~-~~~~~~  299 (513)
                      .....                 ....+++.+||+||++....  ...+   . ....+..+|+||+.... .. ......
T Consensus        92 ~~~~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~  154 (226)
T 2chg_A           92 FARTA-----------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA  154 (226)
T ss_dssp             HHTSC-----------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             Hhccc-----------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence            10000                 11125789999999976421  1111   1 22337788888876431 11 112234


Q ss_pred             eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      .+.+.+++.++..+++.+.+...... -..+....|++.++|+|..+..+.
T Consensus       155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l  204 (226)
T 2chg_A          155 VFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL  204 (226)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             eeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            79999999999999998876421111 225677889999999999655443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.10  E-value=9.1e-10  Score=106.93  Aligned_cols=187  Identities=17%  Similarity=0.219  Sum_probs=114.5

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .|..+..++|++..++.|..++..+..+.+.|+|++|+||||+|+.+++...........++++.+..... ....+++.
T Consensus        16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~   94 (323)
T 1sxj_B           16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI-DVVRNQIK   94 (323)
T ss_dssp             CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred             CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh-HHHHHHHH
Confidence            34556778899999999999998876555999999999999999999988643211111233332222121 11122221


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCchH-HHhh-cCCcc
Q 044393          228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRLQQ-VCDR-MGCDT  299 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~~~-v~~~-~~~~~  299 (513)
                      .+....             .  ....+++.++|+||++...  ....+    ..+.+++.+|+||+... +... .....
T Consensus        95 ~~~~~~-------------~--~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~  159 (323)
T 1sxj_B           95 HFAQKK-------------L--HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA  159 (323)
T ss_dssp             HHHHBC-------------C--CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             HHHhcc-------------c--cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence            110000             0  1113468999999997642  12222    12334778888887642 1111 12235


Q ss_pred             eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH-HHHHHH
Q 044393          300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA-IKVVGS  351 (513)
Q Consensus       300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-i~~~~~  351 (513)
                      .+.+.+++.++..+++...+...... -.++....|++.|+|.|.. +..+..
T Consensus       160 ~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~  211 (323)
T 1sxj_B          160 ILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQS  211 (323)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             EEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            89999999999999998866421111 2256778999999999954 444433

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.98  E-value=3.7e-09  Score=102.82  Aligned_cols=182  Identities=15%  Similarity=0.121  Sum_probs=112.3

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW  228 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~  228 (513)
                      |..+..++|++..++.|..++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+.... .....     
T Consensus        21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-----   94 (327)
T 1iqp_A           21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-INVIR-----   94 (327)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-HHTTH-----
T ss_pred             CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-hHHHH-----
Confidence            445566889999999999999888666799999999999999999998864321101122222221100 00001     


Q ss_pred             hCCCCCCCCHHHHHHHHHHHH---HhccCCeEEEEEecCCCcc--ccccc----ccCCCCcEEEEEeCchHH-Hhhc-CC
Q 044393          229 LGWELKEKDEEERADRLRLMF---SESKGRKILIILDDVWKEL--DLETV----GIPANCCKILLTTRLQQV-CDRM-GC  297 (513)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~~~---~l~~~~~~LlVLDd~~~~~--~~~~l----~~~~~~~~iivTtr~~~v-~~~~-~~  297 (513)
                                    ..+..+.   ....+++.++|+||++...  ....+    ..+..++++|+||....- ...+ ..
T Consensus        95 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr  160 (327)
T 1iqp_A           95 --------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR  160 (327)
T ss_dssp             --------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred             --------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence                          1111110   1222478899999997642  12222    122347788888876421 1111 11


Q ss_pred             cceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393          298 DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS  351 (513)
Q Consensus       298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~  351 (513)
                      ...+.+.+++.++...++...+...... -..+....|++.++|.|..+..+..
T Consensus       161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~  213 (327)
T 1iqp_A          161 CAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQ  213 (327)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcEEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence            2478999999999999998876432211 2256778899999999986554443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.94  E-value=4.5e-09  Score=102.11  Aligned_cols=175  Identities=13%  Similarity=0.128  Sum_probs=106.3

Q ss_pred             ccccccccchhHHHHHHHHHHhc-----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKK-----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQS  223 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~  223 (513)
                      |..+..++|++..+..+...+..     .....+.|+|++|+|||+||+.+++.....     ..+++.+......++  
T Consensus         8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~~~~l--   80 (324)
T 1hqc_A            8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-----LRVTSGPAIEKPGDL--   80 (324)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC-----EEEECTTTCCSHHHH--
T ss_pred             cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEeccccCChHHH--
Confidence            44566788999888888777742     233678999999999999999999876421     223332222111111  


Q ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccccc---------------cCCCC
Q 044393          224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETVG---------------IPANC  279 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l~---------------~~~~~  279 (513)
                                        ...+.   ... .+..+|+|||+.....         ++...               ...++
T Consensus        81 ------------------~~~l~---~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~  138 (324)
T 1hqc_A           81 ------------------AAILA---NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR  138 (324)
T ss_dssp             ------------------HHHHT---TTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred             ------------------HHHHH---Hhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence                              11111   101 2556888998865421         01000               01124


Q ss_pred             cEEEEEeCchH-HHhhc--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHh
Q 044393          280 CKILLTTRLQQ-VCDRM--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSAL  353 (513)
Q Consensus       280 ~~iivTtr~~~-v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l  353 (513)
                      ..+|.||.... +...+  .....+.+.+++.++...++...+...... -..+....+++.|+|+|..+..+...+
T Consensus       139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~  214 (324)
T 1hqc_A          139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV  214 (324)
T ss_dssp             CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            56777776432 11111  112578999999999999998877532222 225678899999999998877665554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.87  E-value=1.5e-08  Score=98.17  Aligned_cols=184  Identities=13%  Similarity=0.073  Sum_probs=111.2

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .|..+..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+......        
T Consensus        12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------   83 (319)
T 2chq_A           12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID--------   83 (319)
T ss_dssp             SCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT--------
T ss_pred             CCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH--------
Confidence            344566788999999999999987765569999999999999999999886322100111223322211100        


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----cccccc-cCCCCcEEEEEeCchH-HHhh-cCCcc
Q 044393          228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----DLETVG-IPANCCKILLTTRLQQ-VCDR-MGCDT  299 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----~~~~l~-~~~~~~~iivTtr~~~-v~~~-~~~~~  299 (513)
                               .................+++.++|+||+....     .+..+. .+.++..+|+||.... +... .....
T Consensus        84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~  154 (319)
T 2chq_A           84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA  154 (319)
T ss_dssp             ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred             ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence                     00000001100001223478899999986542     122222 2223778888877643 1111 12235


Q ss_pred             eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      .+.+.+++.++..+++...+...... -.++....|++.++|.+..+...
T Consensus       155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~  203 (319)
T 2chq_A          155 VFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINA  203 (319)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred             EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence            79999999999999998876432222 22567788999999998865443

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.85  E-value=2.8e-08  Score=98.49  Aligned_cols=194  Identities=18%  Similarity=0.176  Sum_probs=110.2

Q ss_pred             ccccccccchhHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      |..+..++|++..++.|...+..+. .+.+.|+|++|+||||+|+.+++.......+..       ...........+..
T Consensus        12 p~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~   84 (373)
T 1jr3_A           12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQ   84 (373)
T ss_dssp             CCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHT
T ss_pred             CCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhc
Confidence            3445668899999999999997764 357899999999999999999987754321100       00000000111110


Q ss_pred             HhCC-----CCC-CCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEEEeCchH-HHh
Q 044393          228 WLGW-----ELK-EKDEEERADRLRLMF-SESKGRKILIILDDVWKELD--LETV----GIPANCCKILLTTRLQQ-VCD  293 (513)
Q Consensus       228 ~l~~-----~~~-~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iivTtr~~~-v~~  293 (513)
                      ....     ... ..........+..+. ....+++.++|+||+.....  ...+    ..+.++..+|++|.... +..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~  164 (373)
T 1jr3_A           85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV  164 (373)
T ss_dssp             SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred             cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence            0000     000 000011111111100 11234678999999865421  1111    22333677777776532 111


Q ss_pred             h-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          294 R-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       294 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      . ......+.+.+++.++..+++...+..... .-..+....|++.++|.|..+..+.
T Consensus       165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l  221 (373)
T 1jr3_A          165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLT  221 (373)
T ss_dssp             HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred             HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence            1 122367999999999999999876632111 1125667889999999999776554

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.77  E-value=2.9e-08  Score=91.78  Aligned_cols=171  Identities=15%  Similarity=0.091  Sum_probs=104.0

Q ss_pred             ccccccc---hhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          151 FFSSFET---TKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       151 ~~~~~~g---r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .+..|++   .+..++.+..+...+..+.+.|+|++|+||||||+.+++.....  ...+.++..+.....      +. 
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~-   96 (242)
T 3bos_A           26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST-   96 (242)
T ss_dssp             STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred             ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence            3444554   24667777777766556899999999999999999999887654  233455554331110      00 


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----ccccccC----CC-Cc-EEEEEeCchH-------
Q 044393          228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----LETVGIP----AN-CC-KILLTTRLQQ-------  290 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----~~~l~~~----~~-~~-~iivTtr~~~-------  290 (513)
                                         ..+... .++.+||+||+.....    ...+...    .. +. ++|+||+...       
T Consensus        97 -------------------~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~  156 (242)
T 3bos_A           97 -------------------ALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL  156 (242)
T ss_dssp             -------------------GGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred             -------------------HHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence                               000111 2567999999865422    1111111    11 33 4788777421       


Q ss_pred             --HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHH
Q 044393          291 --VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGS  351 (513)
Q Consensus       291 --v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~  351 (513)
                        +...+.....+.+.+++.++..+++...+..... .-..+....|++.++|.+-.+..+..
T Consensus       157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~  218 (242)
T 3bos_A          157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD  218 (242)
T ss_dssp             HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence              2222212267999999999999999887642211 12256778899999998876655443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.72  E-value=2.9e-07  Score=92.90  Aligned_cols=180  Identities=15%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             cCCccccccccchhHHH---HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          146 MHIPRFFSSFETTKSAC---NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       146 ~~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      ...|..+..++|.+..+   ..|...+..+..+.+.|+|++|+||||||+.+++.....       ++.++........+
T Consensus        19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i   91 (447)
T 3pvs_A           19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI   91 (447)
T ss_dssp             HTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH
T ss_pred             HhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH
Confidence            34456677888999888   788888888877889999999999999999999887532       23333222211222


Q ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--cccccccC--CCCcEEEE-EeCchH--H-Hhh
Q 044393          223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLETVGIP--ANCCKILL-TTRLQQ--V-CDR  294 (513)
Q Consensus       223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~~l~~~--~~~~~iiv-Ttr~~~--v-~~~  294 (513)
                      ..++.                ....  ....+++.+|+||++....  ....+...  .+...+|. ||.+..  + ...
T Consensus        92 r~~~~----------------~a~~--~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL  153 (447)
T 3pvs_A           92 REAIE----------------RARQ--NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSAL  153 (447)
T ss_dssp             HHHHH----------------HHHH--HHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHH
T ss_pred             HHHHH----------------HHHH--hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHH
Confidence            22221                1111  1123578999999996542  12222211  12344444 444432  1 111


Q ss_pred             cCCcceeecCCCChHhHHHHHHHhcCCC------CCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          295 MGCDTRIKLDALDQAEGLDLLREHAGID------VADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      ......+.+.+++.++...++.+.+...      ....-.++....|++.++|.+-.+..+.
T Consensus       154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L  215 (447)
T 3pvs_A          154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL  215 (447)
T ss_dssp             HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence            2223578899999999999998876421      1111235677889999999887554433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.70  E-value=1e-07  Score=84.48  Aligned_cols=150  Identities=13%  Similarity=0.154  Sum_probs=87.0

Q ss_pred             cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC-----CCeEEEEEEcCCCChHHHHHH
Q 044393          150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI-----FDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      ..+..++||+..++.+...+..+....+.|+|++|+|||+||+.+++.......     ....+++.++.      .   
T Consensus        19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---   89 (195)
T 1jbk_A           19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L---   89 (195)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H---
T ss_pred             ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H---
Confidence            445668899999999999998776678999999999999999999988754210     12233332211      1   


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHH--hccCCeEEEEEecCCCcc---------cccccc---cCCCCcEEEEEeCchH
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFS--ESKGRKILIILDDVWKEL---------DLETVG---IPANCCKILLTTRLQQ  290 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~--l~~~~~~LlVLDd~~~~~---------~~~~l~---~~~~~~~iivTtr~~~  290 (513)
                       .   ..   ..........+..++.  ...+++.+|+|||+....         ++..+.   ....+..+|+||....
T Consensus        90 -~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~  162 (195)
T 1jbk_A           90 -V---AG---AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE  162 (195)
T ss_dssp             -H---TT---TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred             -h---cc---CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence             0   00   0011111112222111  123478899999996642         111111   1122567777777654


Q ss_pred             HHhh-------cCCcceeecCCCChHhHHHHH
Q 044393          291 VCDR-------MGCDTRIKLDALDQAEGLDLL  315 (513)
Q Consensus       291 v~~~-------~~~~~~~~l~~L~~~e~~~lf  315 (513)
                      ....       ......+.+.+++.++..+++
T Consensus       163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence            2211       122236888888888876553

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.69  E-value=1.9e-07  Score=91.69  Aligned_cols=192  Identities=17%  Similarity=0.134  Sum_probs=111.2

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc--CCCCeEEEEEEcCCCChHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE--KIFDEVGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i  225 (513)
                      .|..+..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++.....  ..+. ...++.+...... .+.+.
T Consensus        32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~  109 (353)
T 1sxj_D           32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR-ILELNASDERGIS-IVREK  109 (353)
T ss_dssp             CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS-EEEECSSSCCCHH-HHTTH
T ss_pred             CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc-eEEEccccccchH-HHHHH
Confidence            345566788999999999999988755559999999999999999999886431  1111 2223333222222 22222


Q ss_pred             HHHhCCC-CCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccc-cccCCCCcEEEEEeCchH-HHhhc-C
Q 044393          226 VKWLGWE-LKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LET-VGIPANCCKILLTTRLQQ-VCDRM-G  296 (513)
Q Consensus       226 ~~~l~~~-~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~-l~~~~~~~~iivTtr~~~-v~~~~-~  296 (513)
                      +..+... .......     ...  ....++.-+|++|++.....     +.. +..+....++|++|.... +...+ .
T Consensus       110 ~~~~~~~~~~~~~~~-----~~~--~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s  182 (353)
T 1sxj_D          110 VKNFARLTVSKPSKH-----DLE--NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS  182 (353)
T ss_dssp             HHHHHHSCCCCCCTT-----HHH--HSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred             HHHHhhhcccccchh-----hcc--cCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence            2211100 0000000     000  11223667999999865421     111 112223667777776432 11111 1


Q ss_pred             CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      ....+.+.+++.++....+...+...... -.++....|++.++|.|..+..+
T Consensus       183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~  234 (353)
T 1sxj_D          183 QCSKFRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITL  234 (353)
T ss_dssp             HSEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cCceEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence            12478999999999999998876432211 22567899999999999865443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.67  E-value=6.8e-07  Score=85.35  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=101.8

Q ss_pred             ccchhHHHHHHHHHHh----cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---C--CeEEEEEEcCCCChHHHHHHH
Q 044393          155 FETTKSACNQITEALK----KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---F--DEVGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i  225 (513)
                      ..+|+.+++.|...|.    .+....+.|+|++|+|||++++.+++.+.....   .  -..+.++.....+...++..|
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I  101 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI  101 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence            4578988888876663    456689999999999999999999999864321   1  134566666777888899999


Q ss_pred             HHHhCCCCCC-CCHHHHHHHHHHHH-Hh--ccCCeEEEEEecCCCccc---ccccc--cCCC--CcEEEEEeCchH----
Q 044393          226 VKWLGWELKE-KDEEERADRLRLMF-SE--SKGRKILIILDDVWKELD---LETVG--IPAN--CCKILLTTRLQQ----  290 (513)
Q Consensus       226 ~~~l~~~~~~-~~~~~~~~~l~~~~-~l--~~~~~~LlVLDd~~~~~~---~~~l~--~~~~--~~~iivTtr~~~----  290 (513)
                      ++++...... ....   ..+..++ .+  ..+++++++||++....+   +-.+.  ....  ...||.++...+    
T Consensus       102 ~~~L~g~~~~~~~~~---~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~  178 (318)
T 3te6_A          102 WFAISKENLCGDISL---EALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE  178 (318)
T ss_dssp             HHHHSCCC--CCCCH---HHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred             HHHhcCCCCCchHHH---HHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence            9998543211 1111   2222222 22  245789999999976532   11111  1112  345555565421    


Q ss_pred             -H----HhhcCCcceeecCCCChHhHHHHHHHhcC
Q 044393          291 -V----CDRMGCDTRIKLDALDQAEGLDLLREHAG  320 (513)
Q Consensus       291 -v----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~  320 (513)
                       +    ...+. ...+.+.+++.++-.+++..++.
T Consensus       179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~  212 (318)
T 3te6_A          179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK  212 (318)
T ss_dssp             HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred             hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence             1    11221 25799999999999999988764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.65  E-value=2.3e-07  Score=91.25  Aligned_cols=193  Identities=13%  Similarity=0.073  Sum_probs=106.8

Q ss_pred             ccccccccchhHHHHHHHHHH-hcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEE---------------
Q 044393          149 PRFFSSFETTKSACNQITEAL-KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVG---------------  208 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~---------------  208 (513)
                      |..+..++|++...+.+..++ ..+..+.+.|+|++|+||||+++.+++.......    ++...               
T Consensus        10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   89 (354)
T 1sxj_E           10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS   89 (354)
T ss_dssp             CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred             CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence            455667889999999999988 6665445999999999999999999985422110    00000               


Q ss_pred             ---EEEEcCCC-C--hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----c-cccccC
Q 044393          209 ---IATVSQDP-D--IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----L-ETVGIP  276 (513)
Q Consensus       209 ---wv~~~~~~-~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~-~~l~~~  276 (513)
                         ++.+.... .  .....++++..+.....-.   ... .+.   .+ .+++-++|||++.....     + ..+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~-~ls---~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~  161 (354)
T 1sxj_E           90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD---FQD-SKD---GL-AHRYKCVIINEANSLTKDAQAALRRTMEKY  161 (354)
T ss_dssp             CSSEEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred             ccceEEecHhhcCCcchHHHHHHHHHHHHhcccc---ccc-ccc---cc-CCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence               01111000 0  0001222222221110000   000 000   01 13677999999987321     1 112223


Q ss_pred             CCCcEEEEEeCchH-HHhh-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCch-HHHHHHHHHHhCCCchHHHHHH
Q 044393          277 ANCCKILLTTRLQQ-VCDR-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTL-TDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       277 ~~~~~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      ..+..+|++|++.. +... ......+.+.+++.++...++...+..... .-. ++.+..|++.++|.+-.+..+.
T Consensus       162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~l  237 (354)
T 1sxj_E          162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLML  237 (354)
T ss_dssp             TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            34788999988742 2111 122267999999999999999877642111 111 3567889999999887554443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.58  E-value=4.3e-06  Score=81.42  Aligned_cols=170  Identities=15%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             CccccccccchhHHHHHHHHHHhc-----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKK-----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      .|..+..++|++..++.+..++..     .....+.|+|++|+|||+||+.+++.....  |   +.++.+....     
T Consensus        24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~--~---~~~~~~~~~~-----   93 (338)
T 3pfi_A           24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN--I---KTTAAPMIEK-----   93 (338)
T ss_dssp             CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC--E---EEEEGGGCCS-----
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--e---EEecchhccc-----
Confidence            344667789999998888888753     334578999999999999999998876432  1   2222221111     


Q ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccccc---------------cCCC
Q 044393          223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LETVG---------------IPAN  278 (513)
Q Consensus       223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~l~---------------~~~~  278 (513)
                                     .......+    ... .+..+|+||++.....         ++...               ...+
T Consensus        94 ---------------~~~~~~~~----~~~-~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T 3pfi_A           94 ---------------SGDLAAIL----TNL-SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP  153 (338)
T ss_dssp             ---------------HHHHHHHH----HTC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred             ---------------hhHHHHHH----Hhc-cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence                           11111111    112 3567899999865421         11100               0111


Q ss_pred             CcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          279 CCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       279 ~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +..+|.+|....     +..  .....+.+.+++.++...++...+.... .....+....|++.+.|+|-.+..+.
T Consensus       154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l  227 (338)
T 3pfi_A          154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL  227 (338)
T ss_dssp             CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence            356777766532     222  2236799999999999999988764221 11225677889999999996555443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.57  E-value=1.3e-06  Score=82.93  Aligned_cols=175  Identities=17%  Similarity=0.116  Sum_probs=100.0

Q ss_pred             cccccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393          150 RFFSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP  216 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~  216 (513)
                      ..+..++|.+..++.|...+..             .....+.|+|++|+|||+||+.+++.....     .+.+..+.-.
T Consensus        14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~   88 (285)
T 3h4m_A           14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV   88 (285)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence            3455677888888888776632             234679999999999999999999876432     2222222111


Q ss_pred             ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------------cccccc------
Q 044393          217 DIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------------DLETVG------  274 (513)
Q Consensus       217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------------~~~~l~------  274 (513)
                      .              ...... ......+..  ......+.+|+|||+....                .+..+.      
T Consensus        89 ~--------------~~~~~~-~~~~~~~~~--~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  151 (285)
T 3h4m_A           89 K--------------KFIGEG-ASLVKDIFK--LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF  151 (285)
T ss_dssp             C--------------CSTTHH-HHHHHHHHH--HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred             H--------------hccchH-HHHHHHHHH--HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence            0              011111 111111111  2223467899999995431                011111      


Q ss_pred             cCCCCcEEEEEeCchHHH-----hhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHH
Q 044393          275 IPANCCKILLTTRLQQVC-----DRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKV  348 (513)
Q Consensus       275 ~~~~~~~iivTtr~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~  348 (513)
                      ....+..||.||......     ........+.+.+.+.++..+++...+.......  ......++..+.|. |-.+..
T Consensus       152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~i~~  229 (285)
T 3h4m_A          152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE--DVNLEEIAKMTEGCVGAELKA  229 (285)
T ss_dssp             CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT--TCCHHHHHHHCTTCCHHHHHH
T ss_pred             CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC--cCCHHHHHHHcCCCCHHHHHH
Confidence            112266788888754321     1111224789999999999999998875322111  11246788888874 434443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.56  E-value=5e-07  Score=91.24  Aligned_cols=180  Identities=18%  Similarity=0.151  Sum_probs=103.4

Q ss_pred             cccccc-ch--hHHHHHHHHHHhcCC-ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          151 FFSSFE-TT--KSACNQITEALKKGS-TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       151 ~~~~~~-gr--~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .+..|+ |.  ......+........ ...+.|+|++|+||||||+.+++.......-..+++++..      .....+.
T Consensus       103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~  176 (440)
T 2z4s_A          103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLV  176 (440)
T ss_dssp             SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred             ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHH
Confidence            445555 43  233444444444432 5789999999999999999999987554111223444322      2333333


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----cccccc-----CCCCcEEEEEeCch--------
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----LETVGI-----PANCCKILLTTRLQ--------  289 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----~~~l~~-----~~~~~~iivTtr~~--------  289 (513)
                      ..+...    ..    ..+..  ... .+..+|+|||+.....    ...+..     ...|..||+||+..        
T Consensus       177 ~~~~~~----~~----~~~~~--~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~  245 (440)
T 2z4s_A          177 DSMKEG----KL----NEFRE--KYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ  245 (440)
T ss_dssp             HHHHTT----CH----HHHHH--HHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred             HHHHcc----cH----HHHHH--Hhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence            333211    11    11111  222 2567999999965432    111111     22377899998863        


Q ss_pred             -HHHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393          290 -QVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       290 -~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~  348 (513)
                       .+...+.....+.+.+++.++-.+++.+.+...... -.++....|++.++|.+-.+.-
T Consensus       246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~  304 (440)
T 2z4s_A          246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRG  304 (440)
T ss_dssp             HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHH
T ss_pred             HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHH
Confidence             223333333578999999999999998876411111 1134577899999999875543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.53  E-value=4.6e-07  Score=93.58  Aligned_cols=192  Identities=16%  Similarity=0.114  Sum_probs=108.4

Q ss_pred             CccccccccchhHHHHHHHHHHhc-----------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEE
Q 044393          148 IPRFFSSFETTKSACNQITEALKK-----------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIA  210 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv  210 (513)
                      .|..+..++|++..++.|..++..                 +..+.+.|+|++|+||||+|+.+++...    + ..+.+
T Consensus        34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~i  108 (516)
T 1sxj_A           34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQ  108 (516)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEE
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEE
Confidence            345667788999999999999864                 1247899999999999999999998873    2 12334


Q ss_pred             EEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----cccccc--CCCCcEEE
Q 044393          211 TVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LETVGI--PANCCKIL  283 (513)
Q Consensus       211 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~l~~--~~~~~~ii  283 (513)
                      +.+..... ......+..........   ......... ....+++.+|++||+.....     +..+..  ...+..||
T Consensus       109 n~s~~~~~-~~~~~~i~~~~~~~~~~---~~~~~~~~~-~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iI  183 (516)
T 1sxj_A          109 NASDVRSK-TLLNAGVKNALDNMSVV---GYFKHNEEA-QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLI  183 (516)
T ss_dssp             CTTSCCCH-HHHHHTGGGGTTBCCST---TTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEE
T ss_pred             eCCCcchH-HHHHHHHHHHhccccHH---HHHhhhhhh-hhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEE
Confidence            44433332 22222222111100000   000000000 11235788999999965422     111111  11245566


Q ss_pred             EEeCchH---HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHH
Q 044393          284 LTTRLQQ---VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVG  350 (513)
Q Consensus       284 vTtr~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~  350 (513)
                      +++....   +.........+.+.+++.++..+++...+......- .++....|++.++|.+- ++..+.
T Consensus       184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i-~~~~l~~la~~s~GdiR~~i~~L~  253 (516)
T 1sxj_A          184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL-DPNVIDRLIQTTRGDIRQVINLLS  253 (516)
T ss_dssp             EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC-CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred             EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHH
Confidence            6665432   222122235789999999999999887664211111 13457889999999554 454443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.52  E-value=1.2e-06  Score=85.46  Aligned_cols=178  Identities=13%  Similarity=0.102  Sum_probs=105.6

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .|..+..++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++.......-.....++.+.....         
T Consensus        20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~---------   90 (340)
T 1sxj_C           20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI---------   90 (340)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH---------
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH---------
Confidence            34556667788999999999998886555999999999999999999998753210011112222221111         


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHH---hccCCeEEEEEecCCCcc--c---ccc-cccCCCCcEEEEEeCchH-HHhh-cC
Q 044393          228 WLGWELKEKDEEERADRLRLMFS---ESKGRKILIILDDVWKEL--D---LET-VGIPANCCKILLTTRLQQ-VCDR-MG  296 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~---l~~~~~~LlVLDd~~~~~--~---~~~-l~~~~~~~~iivTtr~~~-v~~~-~~  296 (513)
                                 ......+..+..   ...+.+-++|+|++....  .   +.. +..+.....+|++|.... +... ..
T Consensus        91 -----------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s  159 (340)
T 1sxj_C           91 -----------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS  159 (340)
T ss_dssp             -----------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred             -----------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence                       111112221111   112357899999985432  1   111 112233667777776532 1111 11


Q ss_pred             CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          297 CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ....+.+.+++.++..+.+...+...... -.++..+.|++.++|.+--+
T Consensus       160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~  208 (340)
T 1sxj_C          160 QCTRFRFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRRV  208 (340)
T ss_dssp             TSEEEECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHH
T ss_pred             hceeEeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence            22478899999999998888766322111 12456788999999987744

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.49  E-value=5.5e-06  Score=77.41  Aligned_cols=176  Identities=17%  Similarity=0.148  Sum_probs=93.4

Q ss_pred             cccccchhHHHHHHHHHH---hc---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393          152 FSSFETTKSACNQITEAL---KK---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII  219 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~  219 (513)
                      +..++|.+...+.|...+   ..         .....+.|+|++|+|||+||+.+++.....     .+.+..+.-.+  
T Consensus         5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~--   77 (262)
T 2qz4_A            5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVE--   77 (262)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSS--
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHh--
Confidence            344566666665554443   22         123568899999999999999999876432     22333322111  


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-------------c----ccccc---c---C
Q 044393          220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-------------D----LETVG---I---P  276 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-------------~----~~~l~---~---~  276 (513)
                                  .............+.   ......+.+|+|||+....             .    +..+.   .   .
T Consensus        78 ------------~~~~~~~~~~~~~~~---~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~  142 (262)
T 2qz4_A           78 ------------VIGGLGAARVRSLFK---EARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT  142 (262)
T ss_dssp             ------------SSTTHHHHHHHHHHH---HHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred             ------------hccChhHHHHHHHHH---HHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence                        001111111111222   2222367899999997541             0    11111   0   1


Q ss_pred             CCCcEEEEEeCchHHHh-hc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          277 ANCCKILLTTRLQQVCD-RM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       277 ~~~~~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                      ..+..||.||....... .+    .....+.+...+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus       143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l  221 (262)
T 2qz4_A          143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI  221 (262)
T ss_dssp             TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred             CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence            12567777776543211 11    1235788999999999999987764222222222234778888888754 44433

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.49  E-value=7.1e-06  Score=77.26  Aligned_cols=173  Identities=17%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-
Q 044393          171 KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-  249 (513)
Q Consensus       171 ~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-  249 (513)
                      ......+.|+|++|+|||+||+.+++....    .. +.++.+...                 ...........+...+ 
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~~-~~i~~~~~~-----------------~g~~~~~~~~~~~~~~~  118 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----PF-IKICSPDKM-----------------IGFSETAKCQAMKKIFD  118 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----SE-EEEECGGGC-----------------TTCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----CE-EEEeCHHHh-----------------cCCchHHHHHHHHHHHH
Confidence            334578999999999999999999987532    21 122222100                 0111111111222211 


Q ss_pred             HhccCCeEEEEEecCCCcc---------------cccccccC---CC-CcEEEEEeCchHHHhh---cCC-cceeecCCC
Q 044393          250 SESKGRKILIILDDVWKEL---------------DLETVGIP---AN-CCKILLTTRLQQVCDR---MGC-DTRIKLDAL  306 (513)
Q Consensus       250 ~l~~~~~~LlVLDd~~~~~---------------~~~~l~~~---~~-~~~iivTtr~~~v~~~---~~~-~~~~~l~~L  306 (513)
                      .....+..+|+|||+....               .+..+...   .+ ...||.||........   .+. ...+.++++
T Consensus       119 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l  198 (272)
T 1d2n_A          119 DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI  198 (272)
T ss_dssp             HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred             HHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence            2222478899999985420               01111111   11 3456777877654433   111 356889999


Q ss_pred             Ch-HhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC------chHHHHHHHHhcCCChHHHHHHHHHHhhc
Q 044393          307 DQ-AEGLDLLREHAGIDVADTTLTDVSKRVADECKGL------PLAIKVVGSALTGRNADEWNVALDKLQNA  371 (513)
Q Consensus       307 ~~-~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~------PLai~~~~~~l~~~~~~~w~~~l~~l~~~  371 (513)
                      +. ++...++.+...      -..+....|++.+.|.      +-++..+-......+...+..+++.+...
T Consensus       199 ~~r~~i~~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~  264 (272)
T 1d2n_A          199 ATGEQLLEALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE  264 (272)
T ss_dssp             EEHHHHHHHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence            88 666666665321      1256678899999884      33344433333333456677777766554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.49  E-value=3.9e-06  Score=82.78  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=103.0

Q ss_pred             cccccchhHHHHH---HHHHHhcCCc--cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE----cCCCChHHHH
Q 044393          152 FSSFETTKSACNQ---ITEALKKGST--KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV----SQDPDIINVQ  222 (513)
Q Consensus       152 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~~~~~~~~  222 (513)
                      +..++|++...+.   +...+..+..  +.+.|+|++|+|||+||+.+++.......|   +.+..    +........+
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~  119 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL  119 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence            6778898887665   4555555543  589999999999999999999988643222   11221    1122233333


Q ss_pred             HHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHHH--hccCC----eEEEEEecCC
Q 044393          223 SELVKWLGW-------------------------------ELKEKDEEERADRLRLMFS--ESKGR----KILIILDDVW  265 (513)
Q Consensus       223 ~~i~~~l~~-------------------------------~~~~~~~~~~~~~l~~~~~--l~~~~----~~LlVLDd~~  265 (513)
                      ...+.....                               .............+.....  ...++    +.+|+|||+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~  199 (368)
T 3uk6_A          120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH  199 (368)
T ss_dssp             HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred             HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence            333322100                               0000001222222222111  11223    4599999997


Q ss_pred             Cccc-----ccccccCCCCcEEEEEeCc-----------------hHHHhhcCCcceeecCCCChHhHHHHHHHhcCCCC
Q 044393          266 KELD-----LETVGIPANCCKILLTTRL-----------------QQVCDRMGCDTRIKLDALDQAEGLDLLREHAGIDV  323 (513)
Q Consensus       266 ~~~~-----~~~l~~~~~~~~iivTtr~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~  323 (513)
                      ....     +..+........++++|..                 +.+...   ...+.+.+++.++..+++...+....
T Consensus       200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~  276 (368)
T 3uk6_A          200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEED  276 (368)
T ss_dssp             GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred             ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcC
Confidence            6421     1111111112234444431                 122222   24589999999999999997765322


Q ss_pred             CCCchHHHHHHHHHHhC-CCchHHHHHH
Q 044393          324 ADTTLTDVSKRVADECK-GLPLAIKVVG  350 (513)
Q Consensus       324 ~~~~~~~~~~~i~~~~~-G~PLai~~~~  350 (513)
                      . .-..+....|++.+. |.|-.+..+.
T Consensus       277 ~-~~~~~~l~~l~~~~~~G~~r~~~~ll  303 (368)
T 3uk6_A          277 V-EMSEDAYTVLTRIGLETSLRYAIQLI  303 (368)
T ss_dssp             C-CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence            1 223567888999998 8776555443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.47  E-value=9.7e-06  Score=78.24  Aligned_cols=177  Identities=15%  Similarity=0.148  Sum_probs=101.4

Q ss_pred             ccccccchhHHHHHHHHHHh------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          151 FFSSFETTKSACNQITEALK------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      .+..+.|.+...+.|...+.            ....+-|.|+|++|+|||+||+.+++.....    ..+.+..+.-.  
T Consensus        10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~--   83 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLV--   83 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSC--
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHH--
Confidence            34456677777776666552            1123679999999999999999999986221    12223322211  


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------cccc-------ccCCC
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETV-------GIPAN  278 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l-------~~~~~  278 (513)
                                  ....+.......... .  .....++.+|+|||+.....             ...+       .....
T Consensus        84 ------------~~~~g~~~~~~~~lf-~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~  148 (322)
T 1xwi_A           84 ------------SKWLGESEKLVKNLF-Q--LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND  148 (322)
T ss_dssp             ------------CSSCCSCHHHHHHHH-H--HHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred             ------------hhhhhHHHHHHHHHH-H--HHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence                        111122222222222 2  22234789999999965411             0111       01122


Q ss_pred             CcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHHH
Q 044393          279 CCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVGS  351 (513)
Q Consensus       279 ~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~~  351 (513)
                      +..||.||....     +..  .....+.+...+.++-.+++...+....... .......|++.+.|..- .|..+..
T Consensus       149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~  224 (322)
T 1xwi_A          149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR  224 (322)
T ss_dssp             TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            556666776432     222  3336788899999999999988775332111 24567889999998744 4555544

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.44  E-value=5.6e-06  Score=80.46  Aligned_cols=169  Identities=14%  Similarity=0.083  Sum_probs=102.7

Q ss_pred             chhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcC--------------------CCCeEEEEEEcCC
Q 044393          157 TTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEK--------------------IFDEVGIATVSQD  215 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~  215 (513)
                      -.+...+.+...+.++.. +.+.++|+.|+||||+|+.+++......                    +++ ..++.... 
T Consensus         6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-   83 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-   83 (334)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT-
T ss_pred             chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc-
Confidence            345667788888877753 5799999999999999999998765321                    122 12221110 


Q ss_pred             CChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh--ccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeC
Q 044393          216 PDIINVQSELVKWLGWELKEKDEEERADRLRLMFSE--SKGRKILIILDDVWKELD------LETVGIPANCCKILLTTR  287 (513)
Q Consensus       216 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l--~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr  287 (513)
                                      .......++....+.. +..  ..+++-++|+|++.....      +..+..+.++..+|++|.
T Consensus        84 ----------------~~~~~~i~~ir~l~~~-~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~  146 (334)
T 1a5t_A           84 ----------------GKNTLGVDAVREVTEK-LNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR  146 (334)
T ss_dssp             ----------------TCSSBCHHHHHHHHHH-TTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred             ----------------cCCCCCHHHHHHHHHH-HhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence                            0011112222222211 111  124678999999876421      222233444677777777


Q ss_pred             chH-HHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          288 LQQ-VCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       288 ~~~-v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +.. +...+ +....+.+.+++.++..+++.+...     . .++.+..+++.++|.|..+..+.
T Consensus       147 ~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~-~~~~~~~l~~~s~G~~r~a~~~l  205 (334)
T 1a5t_A          147 EPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M-SQDALLAALRLSAGSPGAALALF  205 (334)
T ss_dssp             CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C-CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred             ChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C-CHHHHHHHHHHcCCCHHHHHHHh
Confidence            643 22222 2236799999999999999988761     1 14566889999999998665443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.43  E-value=2.8e-06  Score=82.28  Aligned_cols=173  Identities=13%  Similarity=0.119  Sum_probs=101.8

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|++..++.+..++..+.. +.+.+.|++|+|||++|+.+++.....     .+.++.+. .. ...+...+
T Consensus        21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~-----~~~i~~~~-~~-~~~i~~~~   93 (324)
T 3u61_B           21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD-----MMFVNGSD-CK-IDFVRGPL   93 (324)
T ss_dssp             CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE-----EEEEETTT-CC-HHHHHTHH
T ss_pred             CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC-----EEEEcccc-cC-HHHHHHHH
Confidence            355667788999999999999987654 577788889999999999999887422     23333322 11 22222222


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---cccccc----cCCCCcEEEEEeCchH-----HHhh
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---DLETVG----IPANCCKILLTTRLQQ-----VCDR  294 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~l~----~~~~~~~iivTtr~~~-----v~~~  294 (513)
                      ..+..               .  .-..+++.+|++||+....   ....+.    .+..+..+|+||....     +...
T Consensus        94 ~~~~~---------------~--~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR  156 (324)
T 3u61_B           94 TNFAS---------------A--ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR  156 (324)
T ss_dssp             HHHHH---------------B--CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred             HHHHh---------------h--cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence            11100               0  0112378899999997653   111111    1223678888887643     2222


Q ss_pred             cCCcceeecCCCChHhHHHHH-------HHhcCCCCCCCchHHHHHHHHHHhCCCchHHH
Q 044393          295 MGCDTRIKLDALDQAEGLDLL-------REHAGIDVADTTLTDVSKRVADECKGLPLAIK  347 (513)
Q Consensus       295 ~~~~~~~~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~  347 (513)
                      +   ..+.+.+++.++-.+++       .+.+......-...+....|++.++|.+-.+.
T Consensus       157 ~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~  213 (324)
T 3u61_B          157 C---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI  213 (324)
T ss_dssp             S---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred             C---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence            2   47899999988744332       22222111111112677888888988876443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.41  E-value=1.8e-05  Score=76.49  Aligned_cols=178  Identities=19%  Similarity=0.159  Sum_probs=103.5

Q ss_pred             ccccccccchhHHHHHHHHHHh----------cC--CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393          149 PRFFSSFETTKSACNQITEALK----------KG--STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP  216 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~----------~~--~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~  216 (513)
                      +..+..++|.+..++.|...+.          ..  ..+-+.|+|++|+|||+||+.+++.....     .+.++.+   
T Consensus        14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---   85 (322)
T 3eie_A           14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---   85 (322)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH---
T ss_pred             CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH---
Confidence            3445667788888888877762          11  13579999999999999999999876432     1222211   


Q ss_pred             ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------cccc-------ccC
Q 044393          217 DIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETV-------GIP  276 (513)
Q Consensus       217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l-------~~~  276 (513)
                         .    +..    ...+.. ......+..  .....++.+|+|||+.....             ...+       ...
T Consensus        86 ---~----l~~----~~~g~~-~~~~~~~f~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~  151 (322)
T 3eie_A           86 ---D----LVS----KWMGES-EKLVKQLFA--MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND  151 (322)
T ss_dssp             ---H----HHT----TTGGGH-HHHHHHHHH--HHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred             ---H----Hhh----cccchH-HHHHHHHHH--HHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence               1    110    011111 111222222  22234778999999964321             1111       112


Q ss_pred             CCCcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHH
Q 044393          277 ANCCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVG  350 (513)
Q Consensus       277 ~~~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~  350 (513)
                      ..+..||.||....     +..  .....+.+...+.++-.+++...+....... .......|++.+.|. +-.|..+.
T Consensus       152 ~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~  228 (322)
T 3eie_A          152 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVV  228 (322)
T ss_dssp             CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred             CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence            22566776777532     222  2235688889999999999998886432221 245678899999884 44454444


Q ss_pred             H
Q 044393          351 S  351 (513)
Q Consensus       351 ~  351 (513)
                      .
T Consensus       229 ~  229 (322)
T 3eie_A          229 K  229 (322)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.41  E-value=1.3e-05  Score=76.46  Aligned_cols=176  Identities=18%  Similarity=0.140  Sum_probs=101.1

Q ss_pred             cccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          150 RFFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      ..+..++|.+..++.|...+..            .....+.|+|++|+||||||+.+++.....     .+.++.+.-..
T Consensus        18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~   92 (297)
T 3b9p_A           18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS   92 (297)
T ss_dssp             CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS
T ss_pred             CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh
Confidence            3455677888888888776632            124689999999999999999999876422     22233222111


Q ss_pred             hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccc-----------------cccc-cCC--
Q 044393          218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDL-----------------ETVG-IPA--  277 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~-----------------~~l~-~~~--  277 (513)
                                    ..... .......+..  .....++.+|+|||+.....-                 ..+. .+.  
T Consensus        93 --------------~~~~~-~~~~~~~~~~--~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~  155 (297)
T 3b9p_A           93 --------------KYVGD-GEKLVRALFA--VARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP  155 (297)
T ss_dssp             --------------SSCSC-HHHHHHHHHH--HHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred             --------------cccch-HHHHHHHHHH--HHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence                          11111 1122222222  222247789999999654210                 0000 111  


Q ss_pred             --CCcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          278 --NCCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       278 --~~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                        .+..||.||....     +...  ....+.+...+.++-..++...+..... .-.......|++.+.|.+- .+..+
T Consensus       156 ~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l  232 (297)
T 3b9p_A          156 DGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTAL  232 (297)
T ss_dssp             ---CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence              1456777777542     2222  2356777888888888888776642211 1124567889999999886 55444


Q ss_pred             H
Q 044393          350 G  350 (513)
Q Consensus       350 ~  350 (513)
                      .
T Consensus       233 ~  233 (297)
T 3b9p_A          233 A  233 (297)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.36  E-value=1.8e-06  Score=83.69  Aligned_cols=163  Identities=17%  Similarity=0.134  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcC--CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCC
Q 044393          160 SACNQITEALKKG--STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKD  237 (513)
Q Consensus       160 ~~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~  237 (513)
                      .....+...+..+  ....+.|+|++|+||||||+.+++..... .+ .+++++..      .....+...+..    ..
T Consensus        21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~~~~~~----~~   88 (324)
T 1l8q_A           21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMVEHLKK----GT   88 (324)
T ss_dssp             HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHHHHHHH----TC
T ss_pred             HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHHHHHHc----Cc
Confidence            3444455555443  24689999999999999999999987543 12 23344322      223333322211    00


Q ss_pred             HHHHHHHHHHHHHhccCCeEEEEEecCCCccc---c-ccccc-----CCCCcEEEEEeCch---------HHHhhcCCcc
Q 044393          238 EEERADRLRLMFSESKGRKILIILDDVWKELD---L-ETVGI-----PANCCKILLTTRLQ---------QVCDRMGCDT  299 (513)
Q Consensus       238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---~-~~l~~-----~~~~~~iivTtr~~---------~v~~~~~~~~  299 (513)
                      ..    .+..   ... +..+|+|||+.....   . ..+..     ...+..+|+||...         .+...+....
T Consensus        89 ~~----~~~~---~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~  160 (324)
T 1l8q_A           89 IN----EFRN---MYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI  160 (324)
T ss_dssp             HH----HHHH---HHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred             HH----HHHH---Hhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce
Confidence            11    1111   112 466999999965431   1 11111     11266788887642         2222333335


Q ss_pred             eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      .+.+.+ +.++..+++...+..... .-.++....|++.+ |.+-.
T Consensus       161 ~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~  203 (324)
T 1l8q_A          161 LVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVRE  203 (324)
T ss_dssp             EEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHH
T ss_pred             EEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHH
Confidence            689999 999999999887642211 12256678888888 77654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.35  E-value=1.6e-05  Score=77.97  Aligned_cols=178  Identities=12%  Similarity=0.078  Sum_probs=100.8

Q ss_pred             ccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          151 FFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      .+..++|.+..++.|...+..            .....|.|+|++|+|||+||+.+++.....     .+.++.+.-.. 
T Consensus        82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~i~~~~l~~-  155 (357)
T 3d8b_A           82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT-----FFSISASSLTS-  155 (357)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC-
T ss_pred             CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe-----EEEEehHHhhc-
Confidence            445577888888888776631            234789999999999999999999876421     23333332111 


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cC-C
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IP-A  277 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~-~  277 (513)
                                   ..... .......+..  .....++.+|+|||+.....             ...+.       .. .
T Consensus       156 -------------~~~g~-~~~~~~~~~~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~  219 (357)
T 3d8b_A          156 -------------KWVGE-GEKMVRALFA--VARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE  219 (357)
T ss_dssp             -------------SSTTH-HHHHHHHHHH--HHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred             -------------cccch-HHHHHHHHHH--HHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence                         00010 1111111111  22224678999999843210             11111       01 1


Q ss_pred             CCcEEEEEeCchHHH-hh--cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHHH
Q 044393          278 NCCKILLTTRLQQVC-DR--MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVGS  351 (513)
Q Consensus       278 ~~~~iivTtr~~~v~-~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~  351 (513)
                      .+..||.||...... ..  -.....+.+...+.++..+++...+...... -..+....|++.+.|. +-.|..+..
T Consensus       220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~  296 (357)
T 3d8b_A          220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR  296 (357)
T ss_dssp             CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            245666677653211 11  1223577888899999999988776432111 1246678899999984 455655544

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.34  E-value=1.9e-05  Score=77.36  Aligned_cols=176  Identities=18%  Similarity=0.130  Sum_probs=100.7

Q ss_pred             ccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          151 FFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      .+..++|.+..++.|...+..            ...+-|.|+|++|+|||+||+.+++.....     .+.+..+     
T Consensus        49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~-----  118 (355)
T 2qp9_X           49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS-----  118 (355)
T ss_dssp             CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence            445577888888777776621            112458899999999999999999987432     1222211     


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cCCC
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IPAN  278 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~~~  278 (513)
                       .+    ..    ...+........ +..  .....++.+|+|||+.....             ...+.       ....
T Consensus       119 -~l----~~----~~~g~~~~~~~~-~f~--~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~  186 (355)
T 2qp9_X          119 -DL----VS----KWMGESEKLVKQ-LFA--MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ  186 (355)
T ss_dssp             -HH----HS----CC---CHHHHHH-HHH--HHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred             -HH----hh----hhcchHHHHHHH-HHH--HHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence             11    10    111112222222 222  22234789999999965321             11111       1122


Q ss_pred             CcEEEEEeCchH-----HHhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC-chHHHHHHH
Q 044393          279 CCKILLTTRLQQ-----VCDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL-PLAIKVVGS  351 (513)
Q Consensus       279 ~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~  351 (513)
                      +..||.||....     +..  .....+.+...+.++-.+++...+....... .......|++.+.|. +-.|..+..
T Consensus       187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~  262 (355)
T 2qp9_X          187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVK  262 (355)
T ss_dssp             CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            566776776542     222  3346788899999999999998875432111 245678899999985 444555443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.33  E-value=3.5e-06  Score=80.94  Aligned_cols=146  Identities=15%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             ccchhHHHHHHHHHHh---------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393          155 FETTKSACNQITEALK---------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII  219 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~  219 (513)
                      ++|.+...+.|...+.               ......+.|+|++|+|||+||+.+++...........-++.++..    
T Consensus        33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~----  108 (309)
T 3syl_A           33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD----  108 (309)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG----
T ss_pred             ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH----
Confidence            4566666666654442               233457999999999999999999988765432222123333311    


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-----------ccccc---c-cCCCCcEEEE
Q 044393          220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-----------DLETV---G-IPANCCKILL  284 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-----------~~~~l---~-~~~~~~~iiv  284 (513)
                              .+.....+.........+..    .  +..+|+|||+....           ....+   . ....+..+|+
T Consensus       109 --------~l~~~~~g~~~~~~~~~~~~----~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~  174 (309)
T 3syl_A          109 --------DLVGQYIGHTAPKTKEVLKR----A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL  174 (309)
T ss_dssp             --------GTCCSSTTCHHHHHHHHHHH----H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred             --------HhhhhcccccHHHHHHHHHh----c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence                    01111111111222222221    1  34599999997431           11111   1 1122667888


Q ss_pred             EeCchH----------HHhhcCCcceeecCCCChHhHHHHHHHhcC
Q 044393          285 TTRLQQ----------VCDRMGCDTRIKLDALDQAEGLDLLREHAG  320 (513)
Q Consensus       285 Ttr~~~----------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~  320 (513)
                      ||....          +...+  ...+.+.+++.++-.+++...+.
T Consensus       175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~  218 (309)
T 3syl_A          175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD  218 (309)
T ss_dssp             EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred             eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence            886532          12221  26789999999999999987764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.29  E-value=3.7e-05  Score=77.60  Aligned_cols=180  Identities=19%  Similarity=0.217  Sum_probs=100.8

Q ss_pred             cccccccchhHHHHHHHHHHh------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          150 RFFSSFETTKSACNQITEALK------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      ..+..++|.+...+.|...+.            ....+-|.|+|++|+|||+||+.+++.....      .++.++... 
T Consensus       131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~------~~~~v~~~~-  203 (444)
T 2zan_A          131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS------TFFSISSSD-  203 (444)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS------EEEEECCC--
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC------CEEEEeHHH-
Confidence            345567788888887777662            1223689999999999999999999986211      123333221 


Q ss_pred             hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cCC
Q 044393          218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IPA  277 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~~  277 (513)
                      +   ...   ..+.  ........    ..  .....++.+|+|||+.....             ...+.       ...
T Consensus       204 l---~~~---~~g~--~~~~~~~~----f~--~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~  269 (444)
T 2zan_A          204 L---VSK---WLGE--SEKLVKNL----FQ--LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN  269 (444)
T ss_dssp             ----------------CCCTHHHH----HH--HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred             H---Hhh---hcch--HHHHHHHH----HH--HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence            1   100   0111  01111111    11  12224788999999975410             01111       112


Q ss_pred             CCcEEEEEeCchHHHh---hcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc-hHHHHHHH
Q 044393          278 NCCKILLTTRLQQVCD---RMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP-LAIKVVGS  351 (513)
Q Consensus       278 ~~~~iivTtr~~~v~~---~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~  351 (513)
                      .+..||.||.......   .-.....+.+...+.++-..+|...+....... .......|++.+.|.. -.|..+..
T Consensus       270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~  346 (444)
T 2zan_A          270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVR  346 (444)
T ss_dssp             SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            2667777777542211   112335788888889999999988875322111 2456788999999954 45555443

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.26  E-value=3.7e-05  Score=76.37  Aligned_cols=179  Identities=16%  Similarity=0.066  Sum_probs=101.2

Q ss_pred             ccccccccchhHHHHHHHHHHhc------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC
Q 044393          149 PRFFSSFETTKSACNQITEALKK------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP  216 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~  216 (513)
                      +..+..++|.+..++.|...+..            ....-+.|+|++|+|||+||+.+++.....     .+.++.+.-.
T Consensus       111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~-----~~~v~~~~l~  185 (389)
T 3vfd_A          111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT-----FFNISAASLT  185 (389)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE-----EEEECSCCC-
T ss_pred             CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc-----EEEeeHHHhh
Confidence            34566788999888888877721            123689999999999999999998875422     2222222211


Q ss_pred             ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-------------ccccc-------cC
Q 044393          217 DIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-------------LETVG-------IP  276 (513)
Q Consensus       217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-------------~~~l~-------~~  276 (513)
                      .  .            .......... .+..  ......+.+|+|||+.....             ...+.       ..
T Consensus       186 ~--~------------~~g~~~~~~~-~~~~--~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~  248 (389)
T 3vfd_A          186 S--K------------YVGEGEKLVR-ALFA--VARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA  248 (389)
T ss_dssp             --------------------CHHHHH-HHHH--HHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred             c--c------------ccchHHHHHH-HHHH--HHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence            1  0            0011111111 1111  22223668999999964310             00110       01


Q ss_pred             -CCCcEEEEEeCchHHHh-h--cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHHH
Q 044393          277 -ANCCKILLTTRLQQVCD-R--MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVVG  350 (513)
Q Consensus       277 -~~~~~iivTtr~~~v~~-~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~  350 (513)
                       .....||.||....... .  -.....+.+...+.++..+++...+...... ...+....|++.+.|..- +|..+.
T Consensus       249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~  326 (389)
T 3vfd_A          249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALA  326 (389)
T ss_dssp             ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence             11456666776532111 1  1223568889999999999998877543222 224567889999988655 554544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.23  E-value=1.2e-05  Score=76.75  Aligned_cols=171  Identities=15%  Similarity=0.157  Sum_probs=95.8

Q ss_pred             ccccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          151 FFSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      .+..++|.+..++.|...+..             .....+.|+|++|+|||+||+.+++.....       ++.++    
T Consensus        13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-------~i~v~----   81 (301)
T 3cf0_A           13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----   81 (301)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-------EEEEC----
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-------EEEEE----
Confidence            344566777777766665531             234689999999999999999999876422       22222    


Q ss_pred             hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393          218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------I  275 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~  275 (513)
                      ...+....   ++..     .......+.   ......+.+|+||++.....                ...+.      .
T Consensus        82 ~~~l~~~~---~g~~-----~~~~~~~f~---~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~  150 (301)
T 3cf0_A           82 GPELLTMW---FGES-----EANVREIFD---KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS  150 (301)
T ss_dssp             HHHHHHHH---HTTC-----TTHHHHHHH---HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred             hHHHHhhh---cCch-----HHHHHHHHH---HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence            12222211   1211     111122222   22224679999999864210                01111      1


Q ss_pred             CCCCcEEEEEeCchHHHh-h-c---CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          276 PANCCKILLTTRLQQVCD-R-M---GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       276 ~~~~~~iivTtr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      ...+..||.||....... . +   .....+.+...+.++-.+++...+........  .....+++.+.|.|-+
T Consensus       151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~--~~~~~la~~~~g~sg~  223 (301)
T 3cf0_A          151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD--VDLEFLAKMTNGFSGA  223 (301)
T ss_dssp             TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS--CCHHHHHHTCSSCCHH
T ss_pred             CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc--chHHHHHHHcCCCCHH
Confidence            112667888887653221 1 1   12357889999999999999887753221111  1134566778887754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.21  E-value=4.1e-06  Score=73.55  Aligned_cols=113  Identities=19%  Similarity=0.119  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHhc---CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC
Q 044393          158 TKSACNQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK  234 (513)
Q Consensus       158 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~  234 (513)
                      .+..++.+..++.+   .....+.|+|++|+|||||++.+++.......+. +.+++      ..++...+...+.....
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~   91 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD   91 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence            44556666655533   2237899999999999999999999886432222 22332      33344444333221111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCeEEEEEecCCC-ccc-c-----cccccC--CCCcEEEEEeCch
Q 044393          235 EKDEEERADRLRLMFSESKGRKILIILDDVWK-ELD-L-----ETVGIP--ANCCKILLTTRLQ  289 (513)
Q Consensus       235 ~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~-~~~-~-----~~l~~~--~~~~~iivTtr~~  289 (513)
                      .    .   .+.   .+ . +.-+|||||++. ..+ +     ..+...  ..+..+|+||+..
T Consensus        92 ~----~---~~~---~~-~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           92 T----K---FLK---TV-L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             S----H---HHH---HH-H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             H----H---HHH---Hh-c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            1    1   111   11 1 556999999974 222 1     111111  1378899999853

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.17  E-value=4.8e-06  Score=73.17  Aligned_cols=51  Identities=18%  Similarity=0.172  Sum_probs=43.9

Q ss_pred             cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+..++|++.+++.+...+.......+.|+|++|+||||||+.+++....
T Consensus        19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            445668899999999999998766678899999999999999999988744

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.13  E-value=1.1e-05  Score=88.56  Aligned_cols=157  Identities=12%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC---C-C-eEEEEEEcCCCChHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI---F-D-EVGIATVSQDPDIINVQS  223 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~  223 (513)
                      +..+.+++||+.++..+...+.....+-+.|+|++|+||||||+.+++.......   . . .++++.++.-..      
T Consensus       166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------  239 (854)
T 1qvr_A          166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------  239 (854)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred             cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence            4556778999999999999998766667899999999999999999998744211   1 1 222332211100      


Q ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc---------cccc-cc--cCCCCcEEEEEeCchHH
Q 044393          224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL---------DLET-VG--IPANCCKILLTTRLQQV  291 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---------~~~~-l~--~~~~~~~iivTtr~~~v  291 (513)
                            +....+.........+..  ....+++.+|++||+....         +... +.  ...++..+|.+|.....
T Consensus       240 ------g~~~~g~~~~~l~~~~~~--~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~  311 (854)
T 1qvr_A          240 ------GAKYRGEFEERLKAVIQE--VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY  311 (854)
T ss_dssp             ------------CHHHHHHHHHHH--HHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred             ------cCccchHHHHHHHHHHHH--HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence                  001111111122222222  1122378999999996542         1111 11  11124566666654432


Q ss_pred             H-----hhc-CCcceeecCCCChHhHHHHHHHhc
Q 044393          292 C-----DRM-GCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       292 ~-----~~~-~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      .     ..+ .....+.+.+++.++..+++....
T Consensus       312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~  345 (854)
T 1qvr_A          312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK  345 (854)
T ss_dssp             HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred             hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence            1     111 122458899999999999987543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00011  Score=71.88  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=94.7

Q ss_pred             cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +....|-+...+.|...+.    .         ..++-|.++||+|+|||.||+.+++.....  |   +.+..+.-.  
T Consensus       147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~--  219 (405)
T 4b4t_J          147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAELV--  219 (405)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGGGS--
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHHhh--
Confidence            3444566666665555442    1         124678999999999999999999987653  2   223222211  


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------cC
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------IP  276 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~~  276 (513)
                                  ...-+.+.... ..+..  ......+++|++|+++....                +..++      ..
T Consensus       220 ------------sk~vGese~~v-r~lF~--~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~  284 (405)
T 4b4t_J          220 ------------QKYIGEGSRMV-RELFV--MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET  284 (405)
T ss_dssp             ------------CSSTTHHHHHH-HHHHH--HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred             ------------ccccchHHHHH-HHHHH--HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence                        11111111111 11111  22234789999999864310                11111      11


Q ss_pred             CCCcEEEEEeCchHH-----HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          277 ANCCKILLTTRLQQV-----CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       277 ~~~~~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ..+..||.||...+.     ...-.....+.+...+.++-.++|+.+...-....+.  ....|++.|.|.--
T Consensus       285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~SG  355 (405)
T 4b4t_J          285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCSG  355 (405)
T ss_dssp             CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCCH
T ss_pred             CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCCH
Confidence            125567777775432     2211334688999999999999998777532222211  14678888988654

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.10  E-value=1.7e-05  Score=75.66  Aligned_cols=143  Identities=14%  Similarity=0.092  Sum_probs=87.9

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc--CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE--KIFDEVGIATVSQDPDIINVQSELVKWLGWELK  234 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~  234 (513)
                      |.+..++.|...+.+++.+...++|++|+||||+|+.+++.....  .+.+ ...+..+......+..+++.+.+...  
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~ir~li~~~~~~--   77 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIRTIKDFLNYS--   77 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHHHHHHHHTSC--
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHHHHHHHHHhhc--
Confidence            345677888888887777799999999999999999998753211  1233 23333222111122233344333211  


Q ss_pred             CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--c----ccccccCCCCcEEEEEeCch-HHHhhcCCcceeecCCCC
Q 044393          235 EKDEEERADRLRLMFSESKGRKILIILDDVWKEL--D----LETVGIPANCCKILLTTRLQ-QVCDRMGCDTRIKLDALD  307 (513)
Q Consensus       235 ~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~----~~~l~~~~~~~~iivTtr~~-~v~~~~~~~~~~~l~~L~  307 (513)
                                      -..+++-++|+|++....  .    +..+..|.+.+.+|++|.+. .+...+... .+++.+++
T Consensus        78 ----------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~  140 (305)
T 2gno_A           78 ----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV  140 (305)
T ss_dssp             ----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred             ----------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence                            112467899999986642  1    22233444577777777654 344444444 89999999


Q ss_pred             hHhHHHHHHHhc
Q 044393          308 QAEGLDLLREHA  319 (513)
Q Consensus       308 ~~e~~~lf~~~~  319 (513)
                      .++..+.+.+..
T Consensus       141 ~~~i~~~L~~~~  152 (305)
T 2gno_A          141 PKEFRDLVKEKI  152 (305)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.10  E-value=3.8e-05  Score=78.10  Aligned_cols=149  Identities=15%  Similarity=0.175  Sum_probs=84.2

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCC----Ce-EEEEEEcCCCChHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF----DE-VGIATVSQDPDIINVQS  223 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f----~~-~~wv~~~~~~~~~~~~~  223 (513)
                      +..+.+++|++.++..+...+......-+.|+|++|+|||+||+.+++........    .. .+.++.+          
T Consensus       176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------  245 (468)
T 3pxg_A          176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------  245 (468)
T ss_dssp             SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred             cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence            34566789999999999999977655778899999999999999999987432100    11 1112211          


Q ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccc-cccCC--CCcEEEEEeCchHHHhh------
Q 044393          224 ELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLET-VGIPA--NCCKILLTTRLQQVCDR------  294 (513)
Q Consensus       224 ~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~-l~~~~--~~~~iivTtr~~~v~~~------  294 (513)
                         ..    ..+.........+.   .....++.+|++|   ...+... +....  +..++|.+|........      
T Consensus       246 ---~~----~~g~~e~~~~~~~~---~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~a  312 (468)
T 3pxg_A          246 ---TK----YRGEFEDRLKKVMD---EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAA  312 (468)
T ss_dssp             --------------CTTHHHHHH---HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSH
T ss_pred             ---cc----ccchHHHHHHHHHH---HHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHH
Confidence               00    00000011111222   2222467899999   1122211 22111  24667766665431110      


Q ss_pred             -cCCcceeecCCCChHhHHHHHHHhcC
Q 044393          295 -MGCDTRIKLDALDQAEGLDLLREHAG  320 (513)
Q Consensus       295 -~~~~~~~~l~~L~~~e~~~lf~~~~~  320 (513)
                       ......+.+.+.+.++..+++.....
T Consensus       313 l~~Rf~~i~v~~p~~e~~~~iL~~~~~  339 (468)
T 3pxg_A          313 LERRFQPIQVDQPSVDESIQILQGLRD  339 (468)
T ss_dssp             HHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred             HHHhCccceeCCCCHHHHHHHHHHHHH
Confidence             11124689999999999999987664

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.03  E-value=1.4e-05  Score=71.56  Aligned_cols=53  Identities=28%  Similarity=0.180  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHHHhcCC----ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEE
Q 044393          158 TKSACNQITEALKKGS----TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATV  212 (513)
Q Consensus       158 r~~~~~~l~~~l~~~~----~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~  212 (513)
                      +...++.+..++....    ...+.|+|++|+||||||+.+++.....  ...+.++++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~   90 (202)
T 2w58_A           34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV   90 (202)
T ss_dssp             HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH
T ss_pred             HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh
Confidence            3345566666665431    2689999999999999999999988654  234455543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.02  E-value=4e-05  Score=69.90  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=23.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++....+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGELEP   60 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            89999999999999999999987754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=0.00017  Score=71.67  Aligned_cols=166  Identities=15%  Similarity=0.141  Sum_probs=92.6

Q ss_pred             cccchhHHHHHHHHHHh-------------cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH
Q 044393          154 SFETTKSACNQITEALK-------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN  220 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~  220 (513)
                      ...|-+...+.|...+.             -...+-|.++||+|+|||+||+.+++.....  |   +.+..+.-     
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--f---i~vs~s~L-----  279 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--F---IRVIGSEL-----  279 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGG-----
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--e---EEEEhHHh-----
Confidence            34566666666654431             1235789999999999999999999987643  2   22222211     


Q ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--------------------ccccc--cCCC
Q 044393          221 VQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--------------------LETVG--IPAN  278 (513)
Q Consensus       221 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--------------------~~~l~--~~~~  278 (513)
                               ....-+.+..... .+..  ......+++|++|++.....                    +..+-  ....
T Consensus       280 ---------~sk~vGesek~ir-~lF~--~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~  347 (467)
T 4b4t_H          280 ---------VQKYVGEGARMVR-ELFE--MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG  347 (467)
T ss_dssp             ---------CCCSSSHHHHHHH-HHHH--HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred             ---------hcccCCHHHHHHH-HHHH--HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence                     1111111111111 1111  22334789999999864311                    11110  1111


Q ss_pred             CcEEEEEeCchHH-----HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          279 CCKILLTTRLQQV-----CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       279 ~~~iivTtr~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      +..||.||.....     .+.-.....+.+...+.++-.++|+.++..-......  ....|++.|.|.-
T Consensus       348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS  415 (467)
T 4b4t_H          348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST  415 (467)
T ss_dssp             TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred             cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence            5566777765432     2111234688898889999999998877532222211  1466888888865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.99  E-value=2.2e-05  Score=73.26  Aligned_cols=30  Identities=33%  Similarity=0.609  Sum_probs=25.4

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.+++-...
T Consensus        34 i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p   63 (266)
T 4g1u_C           34 IASG--EMVAIIGPNGAGKSTLLRLLTGYLSP   63 (266)
T ss_dssp             EETT--CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred             EcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            3455  89999999999999999999886643

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.98  E-value=0.00044  Score=64.17  Aligned_cols=174  Identities=17%  Similarity=0.152  Sum_probs=90.3

Q ss_pred             cccccccchhHHHHHHHHHH---hc---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          150 RFFSSFETTKSACNQITEAL---KK---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      ..+..++|.+...+.+...+   ..         ....-+.|+|++|+||||||+.+++.....  |     +.++... 
T Consensus         9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~-----~~i~~~~-   80 (257)
T 1lv7_A            9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F-----FTISGSD-   80 (257)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E-----EEECSCS-
T ss_pred             CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E-----EEEeHHH-
Confidence            34555667766665554433   21         113468999999999999999999876422  1     2222111 


Q ss_pred             hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393          218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------I  275 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~  275 (513)
                      ..           ..............+.   ......+.++++|++.....                +..+.      .
T Consensus        81 ~~-----------~~~~~~~~~~~~~~~~---~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~  146 (257)
T 1lv7_A           81 FV-----------EMFVGVGASRVRDMFE---QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE  146 (257)
T ss_dssp             ST-----------TSCCCCCHHHHHHHHH---HHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HH-----------HHhhhhhHHHHHHHHH---HHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence            00           0011122222222222   22234678999999832110                01110      1


Q ss_pred             CCCCcEEEEEeCchHHH-hhc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCC-CchHHH
Q 044393          276 PANCCKILLTTRLQQVC-DRM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKG-LPLAIK  347 (513)
Q Consensus       276 ~~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~  347 (513)
                      ...+..||.||...... ..+    .....+.+...+.++-.+++..........++  .....++..+.| .+--|.
T Consensus       147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~  222 (257)
T 1lv7_A          147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLA  222 (257)
T ss_dssp             SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred             cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHH
Confidence            11256677777764321 111    12356778888888888888776643211111  113456677777 554443

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.95  E-value=0.00013  Score=74.30  Aligned_cols=167  Identities=18%  Similarity=0.189  Sum_probs=93.5

Q ss_pred             cccccchhHHHHHHHHHHhc-------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALKK-------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +..++|.+..++.|...+..             ....-|.|+|++|+|||+||+.+++.....     .+.++.+     
T Consensus       203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~-----fv~vn~~-----  272 (489)
T 3hu3_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP-----  272 (489)
T ss_dssp             GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE-----EEEEEHH-----
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC-----EEEEEch-----
Confidence            44577888888887776632             234679999999999999999998876321     2223211     


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc---cCCCC
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG---IPANC  279 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~---~~~~~  279 (513)
                           .+.    ....+.........+.   ....+++.+|+|||+.....                +-.+.   ....+
T Consensus       273 -----~l~----~~~~g~~~~~~~~~f~---~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~  340 (489)
T 3hu3_A          273 -----EIM----SKLAGESESNLRKAFE---EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH  340 (489)
T ss_dssp             -----HHH----TSCTTHHHHHHHHHHH---HHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred             -----Hhh----hhhcchhHHHHHHHHH---HHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence                 111    1111111111122222   23335788999999832110                11111   11125


Q ss_pred             cEEEEEeCchHH-Hhhc----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCC
Q 044393          280 CKILLTTRLQQV-CDRM----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGL  342 (513)
Q Consensus       280 ~~iivTtr~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~  342 (513)
                      ..||.||..... ...+    .....+.+...+.++-.++|..++.......  ......+++.+.|.
T Consensus       341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~--~~~l~~la~~t~g~  406 (489)
T 3hu3_A          341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD--DVDLEQVANETHGH  406 (489)
T ss_dssp             EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT--TCCHHHHHHTCTTC
T ss_pred             eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc--hhhHHHHHHHccCC
Confidence            677777776532 1111    2235688999999999999998875322111  11235577777775

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.94  E-value=0.00019  Score=77.87  Aligned_cols=155  Identities=14%  Similarity=0.161  Sum_probs=91.3

Q ss_pred             cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEE-EEcCCCChHHHHHH
Q 044393          150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIA-TVSQDPDIINVQSE  224 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv-~~~~~~~~~~~~~~  224 (513)
                      ..+..++||+.++..+...+......-+.|+|++|+||||+|+.+++......    .....++. ..+.-         
T Consensus       183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------  253 (758)
T 1r6b_X          183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------  253 (758)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred             CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence            45567899999999999999876667889999999999999999998874321    11223321 11100         


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------cccc-cccC--CCCcEEEEEeCchHH
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------DLET-VGIP--ANCCKILLTTRLQQV  291 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~~~~-l~~~--~~~~~iivTtr~~~v  291 (513)
                       .  .+....+ ........+..  .+...++.+|++||+....          +... +...  .++..+|.+|.....
T Consensus       254 -~--~~~~~~g-~~e~~l~~~~~--~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~  327 (758)
T 1r6b_X          254 -L--AGTKYRG-DFEKRFKALLK--QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF  327 (758)
T ss_dssp             ----CCCCCSS-CHHHHHHHHHH--HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHH
T ss_pred             -h--ccccccc-hHHHHHHHHHH--HHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHH
Confidence             0  0011111 11222222222  3333467999999996541          1111 1111  225677777765443


Q ss_pred             Hhhc-------CCcceeecCCCChHhHHHHHHHhc
Q 044393          292 CDRM-------GCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       292 ~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      ....       .....+.+...+.++..+++....
T Consensus       328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~  362 (758)
T 1r6b_X          328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  362 (758)
T ss_dssp             HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence            2111       111368899999999998887654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.94  E-value=2.3e-05  Score=72.57  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++....
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~p   57 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHRP   57 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            79999999999999999999987654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.0002  Score=71.26  Aligned_cols=169  Identities=17%  Similarity=0.167  Sum_probs=93.3

Q ss_pred             cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +....|-+..++.|...+.    .         ..++-|.++||+|+|||+||+.+++.....     .+.+..+.-.+ 
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s-  253 (437)
T 4b4t_L          180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD-  253 (437)
T ss_dssp             SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred             hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence            3344566666655555442    1         124789999999999999999999987643     22233222111 


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------cC
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------IP  276 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~~  276 (513)
                                   ...+.+.. ....+..  ......+++|++|+++....                +..++      ..
T Consensus       254 -------------k~~Gese~-~ir~~F~--~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~  317 (437)
T 4b4t_L          254 -------------KYIGESAR-IIREMFA--YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN  317 (437)
T ss_dssp             -------------SSSSHHHH-HHHHHHH--HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred             -------------ccchHHHH-HHHHHHH--HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence                         11111111 1111111  22334889999999964310                11111      11


Q ss_pred             CCCcEEEEEeCchHHHhh-c-C---CcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          277 ANCCKILLTTRLQQVCDR-M-G---CDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       277 ~~~~~iivTtr~~~v~~~-~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ..+..||.||......+. + .   -...+.+...+.++-.++|+.+...-....+.  ....|++.+.|.--
T Consensus       318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~sG  388 (437)
T 4b4t_L          318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFNG  388 (437)
T ss_dssp             TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCCH
T ss_pred             CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCCH
Confidence            125678888876543221 1 1   23568888888888888888776432211111  14667888888654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.92  E-value=3.2e-05  Score=70.33  Aligned_cols=26  Identities=31%  Similarity=0.426  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~p   56 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDAP   56 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            79999999999999999999887653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.92  E-value=1.9e-05  Score=71.09  Aligned_cols=26  Identities=42%  Similarity=0.718  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.....
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~p   61 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLKP   61 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            79999999999999999999887653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.92  E-value=3.5e-05  Score=71.47  Aligned_cols=26  Identities=31%  Similarity=0.607  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~p   67 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIKP   67 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            89999999999999999999887653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.91  E-value=2.2e-05  Score=71.89  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+..-..+
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~~p   57 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLDKP   57 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            89999999999999999999887654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.91  E-value=0.00035  Score=67.66  Aligned_cols=173  Identities=20%  Similarity=0.244  Sum_probs=96.5

Q ss_pred             CCccccccccchhHHHHHHHHHHhcC-----CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHH
Q 044393          147 HIPRFFSSFETTKSACNQITEALKKG-----STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINV  221 (513)
Q Consensus       147 ~~~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~  221 (513)
                      ..+..+..++|.+..++.+...+..+     ....+.|+|++|+||||||+.+++.....  |.     ..+.....   
T Consensus        19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~-----~~sg~~~~---   88 (334)
T 1in4_A           19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH-----VTSGPVLV---   88 (334)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE-----EEETTTCC---
T ss_pred             cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE-----EEechHhc---
Confidence            34556677888888888888777542     34679999999999999999999987432  11     11111000   


Q ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----c----cccc---------------cCC
Q 044393          222 QSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----L----ETVG---------------IPA  277 (513)
Q Consensus       222 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~----~~l~---------------~~~  277 (513)
                                     ...+....+.   .+ . ++.++++|++.....     +    +...               ...
T Consensus        89 ---------------~~~~l~~~~~---~~-~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l  148 (334)
T 1in4_A           89 ---------------KQGDMAAILT---SL-E-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI  148 (334)
T ss_dssp             ---------------SHHHHHHHHH---HC-C-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred             ---------------CHHHHHHHHH---Hc-c-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence                           0011111111   11 1 344667777643210     0    0000               000


Q ss_pred             CCcEEE-EEeCchHHHhhc--CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHH
Q 044393          278 NCCKIL-LTTRLQQVCDRM--GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVG  350 (513)
Q Consensus       278 ~~~~ii-vTtr~~~v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~  350 (513)
                      +...++ .|++...+...+  .....+.+++.+.++-.+++.+.+.... .....+.+..|++.+.|.|-.+..+.
T Consensus       149 ~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll  223 (334)
T 1in4_A          149 QPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLT  223 (334)
T ss_dssp             CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             CCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence            112333 344433222111  1223578999999999999988764211 12235778999999999997554433

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.00034  Score=68.84  Aligned_cols=170  Identities=18%  Similarity=0.130  Sum_probs=93.3

Q ss_pred             ccccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          151 FFSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      .+....|-+...+.|...+.    .         ...+-|.++||+|+|||.||+.+++.....  |   +.+..+.-  
T Consensus       180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l--  252 (437)
T 4b4t_I          180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSEL--  252 (437)
T ss_dssp             CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGG--
T ss_pred             cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHh--
Confidence            34444566666555554442    1         124679999999999999999999987653  2   12222211  


Q ss_pred             hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------ccccc------c
Q 044393          218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVG------I  275 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~------~  275 (513)
                                  .....+.+. .....+..  ......+++|++|+++....                +..++      .
T Consensus       253 ------------~sk~vGese-k~ir~lF~--~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~  317 (437)
T 4b4t_I          253 ------------IQKYLGDGP-RLCRQIFK--VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD  317 (437)
T ss_dssp             ------------CCSSSSHHH-HHHHHHHH--HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred             ------------hhccCchHH-HHHHHHHH--HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence                        111111111 11112222  22334789999999864310                11111      1


Q ss_pred             CCCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          276 PANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       276 ~~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ...+..||.||...+..+. +    .....+.+...+.++-.++|+.+...-....+.  ....|++.+.|.--
T Consensus       318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfSG  389 (437)
T 4b4t_I          318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLSG  389 (437)
T ss_dssp             CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCCH
T ss_pred             CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCCH
Confidence            1125567777776543221 1    123568888888888889998877532212111  14667888888653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.90  E-value=5.2e-05  Score=70.84  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=23.9

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      +..+  .+++|+|++|+|||||++.++.-
T Consensus        43 i~~G--e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPG--EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTT--CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            3445  89999999999999999999986

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.90  E-value=8.7e-05  Score=73.77  Aligned_cols=169  Identities=16%  Similarity=0.124  Sum_probs=91.8

Q ss_pred             ccccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          151 FFSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      .+....|-+...+.|...+.    .         ..++-|.++||+|+|||+||+.+++.....  |   +.+..+.-  
T Consensus       179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l--  251 (434)
T 4b4t_M          179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--F---LKLAAPQL--  251 (434)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E---EEEEGGGG--
T ss_pred             ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--E---EEEehhhh--
Confidence            34455676766666665431    1         124689999999999999999999987643  1   22222211  


Q ss_pred             hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc-------c---------ccccc---cC--
Q 044393          218 IINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL-------D---------LETVG---IP--  276 (513)
Q Consensus       218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~-------~---------~~~l~---~~--  276 (513)
                                  .....+.+.. ....+..  ......+++|++|+++...       .         +..++   ..  
T Consensus       252 ------------~~~~vGese~-~ir~lF~--~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~  316 (434)
T 4b4t_M          252 ------------VQMYIGEGAK-LVRDAFA--LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS  316 (434)
T ss_dssp             ------------CSSCSSHHHH-HHHHHHH--HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred             ------------hhcccchHHH-HHHHHHH--HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence                        1111111111 1111111  2222378999999984320       0         11111   11  


Q ss_pred             -CCCcEEEEEeCchHHHhh-c----CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          277 -ANCCKILLTTRLQQVCDR-M----GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       277 -~~~~~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                       ..+..||.||......+. +    .....+.+...+.++-.++|+.+...-....+.  ....|++.+.|.-
T Consensus       317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~s  387 (434)
T 4b4t_M          317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEFN  387 (434)
T ss_dssp             SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSCC
T ss_pred             CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence             114567777776433221 1    123578888888888888887665421111111  1466888888865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.90  E-value=2e-05  Score=73.85  Aligned_cols=30  Identities=33%  Similarity=0.573  Sum_probs=25.3

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.++.-...
T Consensus        31 i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           31 IKRG--EVTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             EETT--SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            3445  89999999999999999999886643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.90  E-value=3.8e-05  Score=70.43  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++....+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~p   57 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMDK   57 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            89999999999999999999987754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.90  E-value=5.1e-05  Score=73.62  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=25.9

Q ss_pred             HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+..+  .+++|+|++|+|||||++.+..-.+.
T Consensus        50 ~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           50 HVPAG--QIYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             EECTT--CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEcCC--CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence            34455  89999999999999999999887653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.89  E-value=4.5e-05  Score=69.63  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC--------------------
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK--------------------  234 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------------  234 (513)
                      .+++|+|++|+|||||++.++.......  ..+.|+..  ......+...+ ..++....                    
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTT--EESRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ   98 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEES--SSCHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEc--ccCHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence            7999999999999999999997765432  23444443  33333333332 23332111                    


Q ss_pred             ----CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc--ccc---cc----cc--CCCCcEEEEEeCch
Q 044393          235 ----EKDEEERADRLRLMFSESKGRKILIILDDVWKEL--DLE---TV----GI--PANCCKILLTTRLQ  289 (513)
Q Consensus       235 ----~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~--~~~---~l----~~--~~~~~~iivTtr~~  289 (513)
                          ..+..+....+.......+.+..+||+|++....  +..   .+    ..  ...|..||+|||..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence                1133444444444222222234599999997543  221   11    11  11278999999975

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.86  E-value=6.8e-06  Score=78.19  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=25.3

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.+.+-...
T Consensus        77 i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           77 VMPG--QTLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             ECTT--CEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             EcCC--CEEEEECCCCchHHHHHHHHHcCCCC
Confidence            3445  89999999999999999999886653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.86  E-value=5.6e-05  Score=69.63  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.++.-..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            8999999999999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.86  E-value=2.5e-05  Score=81.85  Aligned_cols=39  Identities=28%  Similarity=0.438  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+.-.+.++  .+++|+|++|+|||||++.+.+-..+
T Consensus       357 ~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          357 PALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             cccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3555555555666  89999999999999999999887654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.86  E-value=3.2e-05  Score=71.98  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~~p   76 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLEDF   76 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence            89999999999999999999887653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.86  E-value=6e-05  Score=70.15  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=64.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeE---------EEE-EEcCCCC----hHH--------------HHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEV---------GIA-TVSQDPD----IIN--------------VQS  223 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~---------~wv-~~~~~~~----~~~--------------~~~  223 (513)
                      .+++|+|++|+|||||++.++... +..   .++..         ... ++.+.+.    +.+              ...
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~  109 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL  109 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHH
Confidence            799999999999999999999876 420   01100         012 3444432    111              123


Q ss_pred             HHHHHhCCC-CC------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccCCCCcEEEEEeCch
Q 044393          224 ELVKWLGWE-LK------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIPANCCKILLTTRLQ  289 (513)
Q Consensus       224 ~i~~~l~~~-~~------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~~iivTtr~~  289 (513)
                      ++++.++.. ..      ..+..+ ..-.+..  .+.. ++-+|+||++.+..|....      ...... .||++||+.
T Consensus       110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAr--aL~~-~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~  185 (263)
T 2pjz_A          110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSL--ALAS-QPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHEL  185 (263)
T ss_dssp             HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHH--HHHT-CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCG
T ss_pred             HHHHHcCCChhHhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCH
Confidence            444555543 11      111111 1112222  4444 6779999999998774321      111123 899999997


Q ss_pred             HHHhhc
Q 044393          290 QVCDRM  295 (513)
Q Consensus       290 ~v~~~~  295 (513)
                      ..+..+
T Consensus       186 ~~~~~~  191 (263)
T 2pjz_A          186 DMLNLY  191 (263)
T ss_dssp             GGGGGC
T ss_pred             HHHHHh
Confidence            665544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.85  E-value=3.6e-05  Score=70.76  Aligned_cols=26  Identities=35%  Similarity=0.506  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~p   58 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            79999999999999999999887653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.85  E-value=3.3e-05  Score=75.44  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCC
Confidence            89999999999999999999887653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.84  E-value=2.6e-05  Score=65.95  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=24.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...+.|+|++|+|||||++.+++....
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            379999999999999999999998765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.84  E-value=0.00012  Score=79.34  Aligned_cols=150  Identities=16%  Similarity=0.189  Sum_probs=85.1

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCC----CCeEEEEEEcCCCChHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKI----FDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      +..+.+++|++.+++.+...+......-+.++|++|+|||++|+.+++.......    ..+.+ +.++-          
T Consensus       176 ~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~----------  244 (758)
T 3pxi_A          176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM----------  244 (758)
T ss_dssp             SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC------------
T ss_pred             hCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc----------
Confidence            3456678999999999999997766577899999999999999999988733110    11111 11111          


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccccc-cccC--CCCcEEEEEeCchHHHhh-------
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDLET-VGIP--ANCCKILLTTRLQQVCDR-------  294 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~-l~~~--~~~~~iivTtr~~~v~~~-------  294 (513)
                           +....+.........+.   .....++.+|++|.   ..+... +...  .+..++|.+|........       
T Consensus       245 -----g~~~~G~~e~~l~~~~~---~~~~~~~~iLfiD~---~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al  313 (758)
T 3pxi_A          245 -----GTKYRGEFEDRLKKVMD---EIRQAGNIILFIDA---AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAAL  313 (758)
T ss_dssp             -------------CTTHHHHHH---HHHTCCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred             -----cccccchHHHHHHHHHH---HHHhcCCEEEEEcC---chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHH
Confidence                 11111111111222222   22224778999992   122222 2211  225677777765431110       


Q ss_pred             cCCcceeecCCCChHhHHHHHHHhcC
Q 044393          295 MGCDTRIKLDALDQAEGLDLLREHAG  320 (513)
Q Consensus       295 ~~~~~~~~l~~L~~~e~~~lf~~~~~  320 (513)
                      ......+.+...+.++..+++.....
T Consensus       314 ~rRf~~i~v~~p~~~~~~~il~~~~~  339 (758)
T 3pxi_A          314 ERRFQPIQVDQPSVDESIQILQGLRD  339 (758)
T ss_dssp             HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred             HhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence            01125689999999999999987654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.84  E-value=3.3e-05  Score=71.35  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.++....
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            7999999999999999999988764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.83  E-value=4.4e-05  Score=71.34  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~~p   59 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLIEP   59 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            89999999999999999999887653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.00046  Score=68.51  Aligned_cols=168  Identities=17%  Similarity=0.121  Sum_probs=87.2

Q ss_pred             cccccchhHHHHHHHHHHh----c---------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          152 FSSFETTKSACNQITEALK----K---------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      +....|-+...+.|...+.    .         ...+-|.++||+|+|||+||+.+++.....     .+.+..+.-.+ 
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~-  244 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH-  244 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc-
Confidence            3344566666666555442    1         124679999999999999999999987643     22233222111 


Q ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------c------ccccc------cC
Q 044393          219 INVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------D------LETVG------IP  276 (513)
Q Consensus       219 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~------~~~l~------~~  276 (513)
                                   ...+.+...... +..  ......++++++|++....          +      +..+.      ..
T Consensus       245 -------------~~~Ge~e~~ir~-lF~--~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~  308 (428)
T 4b4t_K          245 -------------KYLGEGPRMVRD-VFR--LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ  308 (428)
T ss_dssp             -------------SSCSHHHHHHHH-HHH--HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred             -------------cccchhHHHHHH-HHH--HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence                         111111111111 111  2223478999999984321          0      11111      11


Q ss_pred             CCCcEEEEEeCchH-----HHhhcCCcceeecCCCC-hHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          277 ANCCKILLTTRLQQ-----VCDRMGCDTRIKLDALD-QAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       277 ~~~~~iivTtr~~~-----v~~~~~~~~~~~l~~L~-~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      ..+..||.||....     +.+.-.....+.+.+++ .++-..+|+.+.......++  -....|++.+.|.-
T Consensus       309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~--~dl~~lA~~t~G~s  379 (428)
T 4b4t_K          309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE--ADLDSLIIRNDSLS  379 (428)
T ss_dssp             SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT--CCHHHHHHHTTTCC
T ss_pred             CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc--cCHHHHHHHCCCCC
Confidence            22566777887543     22211223567786664 45555666665532211111  11466788888865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.82  E-value=4.6e-05  Score=73.86  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCC
Confidence            89999999999999999999987654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.82  E-value=5.9e-05  Score=73.00  Aligned_cols=125  Identities=20%  Similarity=0.183  Sum_probs=68.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeE----------EEEEEcCCC------ChHH---------------
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEV----------GIATVSQDP------DIIN---------------  220 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~----------~wv~~~~~~------~~~~---------------  220 (513)
                      .+++|+|++|+|||||++.++.-.....   .++..          -..++.|.+      ++.+               
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  106 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            7999999999999999999998765420   01110          012334432      2211               


Q ss_pred             HHHHHHHHhCCCCC------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccc-------cccC--CCCcEEEE
Q 044393          221 VQSELVKWLGWELK------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLET-------VGIP--ANCCKILL  284 (513)
Q Consensus       221 ~~~~i~~~l~~~~~------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~-------l~~~--~~~~~iiv  284 (513)
                      ...++++.++....      ..+..+ ..-.+..  .+.. ++-+|+||++.+.+|...       +...  ..|..||+
T Consensus       107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAr--aL~~-~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~  183 (348)
T 3d31_A          107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALAR--ALVT-NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH  183 (348)
T ss_dssp             HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHH--HTTS-CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH--HHHc-CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            12233444443211      111111 1222222  4444 677999999998876322       1111  12789999


Q ss_pred             EeCchHHHhhcCCcceeec
Q 044393          285 TTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       285 Ttr~~~v~~~~~~~~~~~l  303 (513)
                      +||+...+..+. .+.+.+
T Consensus       184 vTHd~~~~~~~a-dri~vl  201 (348)
T 3d31_A          184 ITHDQTEARIMA-DRIAVV  201 (348)
T ss_dssp             EESCHHHHHHHC-SEEEEE
T ss_pred             EeCCHHHHHHhC-CEEEEE
Confidence            999977665543 244444

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.81  E-value=0.00034  Score=70.63  Aligned_cols=168  Identities=18%  Similarity=0.195  Sum_probs=92.2

Q ss_pred             cccccchhHHHHHHHHH---HhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH
Q 044393          152 FSSFETTKSACNQITEA---LKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII  219 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~  219 (513)
                      +..+.|.+..++.+...   +...         -.+-|.|+|++|+|||+||+.+++.....  |   +.++.+.-... 
T Consensus        15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f---~~is~~~~~~~-   88 (476)
T 2ce7_A           15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--F---FHISGSDFVEL-   88 (476)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC-
T ss_pred             HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH-
Confidence            44456666655555443   3221         12458899999999999999999876432  2   22333222111 


Q ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc----------------cccccc------CC
Q 044393          220 NVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD----------------LETVGI------PA  277 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~----------------~~~l~~------~~  277 (513)
                                   ..+.........+.   ....+.+.+|+||++.....                +..+..      ..
T Consensus        89 -------------~~g~~~~~~r~lf~---~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~  152 (476)
T 2ce7_A           89 -------------FVGVGAARVRDLFA---QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK  152 (476)
T ss_dssp             -------------CTTHHHHHHHHHHH---HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred             -------------HhcccHHHHHHHHH---HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence                         00111111222222   22234789999999954310                111110      11


Q ss_pred             CCcEEEEEeCchHHHhh--c---CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          278 NCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       278 ~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      .+..||.||+.....+.  .   .....+.+...+.++-.++++.++......+..  ....|++.+.|+.
T Consensus       153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s  221 (476)
T 2ce7_A          153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV  221 (476)
T ss_dssp             GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred             CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence            26678888887643221  1   122478888888888888888776532211111  1355888888887

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.81  E-value=7.5e-05  Score=68.92  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~~p   61 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFYIP   61 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            89999999999999999999887653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.80  E-value=9.4e-05  Score=69.25  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~~p   71 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLYQP   71 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            89999999999999999999887653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.79  E-value=4.2e-05  Score=70.79  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .+++|+|++|+|||||++.++..
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            79999999999999999999985

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.76  E-value=6.1e-05  Score=68.09  Aligned_cols=86  Identities=16%  Similarity=0.139  Sum_probs=50.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCC----------CCCCCH---HHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWE----------LKEKDE---EER  241 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----------~~~~~~---~~~  241 (513)
                      .++.|+|++|+|||||+..++.  ..   -..++|+......+...+. .+.+.++..          ......   ...
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRRV   94 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence            7999999999999999999998  21   2456677665544544433 333332221          001111   122


Q ss_pred             HHHHHHHHHhccCCeEEEEEecCCCccc
Q 044393          242 ADRLRLMFSESKGRKILIILDDVWKELD  269 (513)
Q Consensus       242 ~~~l~~~~~l~~~~~~LlVLDd~~~~~~  269 (513)
                      ...++   .+...+.-+||+|++....+
T Consensus        95 ~~~~~---~l~~~~~~lliiD~~~~~l~  119 (220)
T 2cvh_A           95 IGSLK---KTVDSNFALVVVDSITAHYR  119 (220)
T ss_dssp             HHHHH---HHCCTTEEEEEEECCCCCTT
T ss_pred             HHHHH---HHhhcCCCEEEEcCcHHHhh
Confidence            33333   33332578999999976643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.75  E-value=0.00012  Score=67.40  Aligned_cols=92  Identities=10%  Similarity=0.037  Sum_probs=53.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCChHHHHHHHHHHhCCCC----------CCCCHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDIINVQSELVKWLGWEL----------KEKDEEE  240 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~  240 (513)
                      .++.|+|++|+|||||+..++.......    .-..++|+.....+....+ ..+++.++...          ...+..+
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~  103 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDH  103 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence            7999999999999999999988532211    1245677766554444333 33444444321          1122222


Q ss_pred             HHH---HHHHHHHhccCCeEEEEEecCCCccc
Q 044393          241 RAD---RLRLMFSESKGRKILIILDDVWKELD  269 (513)
Q Consensus       241 ~~~---~l~~~~~l~~~~~~LlVLDd~~~~~~  269 (513)
                      ...   .+..  .+...+.-+||+|++....+
T Consensus       104 ~~~~~~~~~~--~~~~~~~~lliiD~~~~~~~  133 (243)
T 1n0w_A          104 QTQLLYQASA--MMVESRYALLIVDSATALYR  133 (243)
T ss_dssp             HHHHHHHHHH--HHHHSCEEEEEEETSSGGGC
T ss_pred             HHHHHHHHHH--HHhcCCceEEEEeCchHHHH
Confidence            222   2333  22234778999999976543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.75  E-value=4.9e-05  Score=69.77  Aligned_cols=26  Identities=19%  Similarity=0.395  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p   50 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            79999999999999999999887653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.75  E-value=4.8e-05  Score=70.90  Aligned_cols=26  Identities=19%  Similarity=0.408  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~p   58 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEKP   58 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            89999999999999999999887653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.74  E-value=7.3e-05  Score=72.47  Aligned_cols=29  Identities=41%  Similarity=0.731  Sum_probs=25.1

Q ss_pred             hcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          170 KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       170 ~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+  .+++|+|++|+|||||++.++.-...
T Consensus        39 ~~G--e~~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           39 REG--EMVGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             ETT--CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            445  89999999999999999999987653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.73  E-value=8.7e-05  Score=70.08  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++-...
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~p   90 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELEP   90 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            79999999999999999999987654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.71  E-value=7.6e-05  Score=64.73  Aligned_cols=21  Identities=43%  Similarity=0.417  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVG  195 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~  195 (513)
                      .+++|+|++|+|||||++.++
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            799999999999999999643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.71  E-value=0.00011  Score=71.37  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p   55 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYKP   55 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCC
Confidence            89999999999999999999987653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.70  E-value=5.8e-05  Score=73.73  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence            89999999999999999999987654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.69  E-value=0.00053  Score=65.40  Aligned_cols=45  Identities=24%  Similarity=0.277  Sum_probs=35.6

Q ss_pred             ccchhHHHHHHHHHHhc--------------CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          155 FETTKSACNQITEALKK--------------GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++|.+..++.+...+..              .....+.|+|++|+|||++|+.+++...
T Consensus        17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            56888888877776643              1236788999999999999999998874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.68  E-value=0.00012  Score=71.18  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p   55 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYKP   55 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCCC
Confidence            89999999999999999999987653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.68  E-value=6.3e-05  Score=68.55  Aligned_cols=92  Identities=14%  Similarity=0.057  Sum_probs=50.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc---C-CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHH-
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE---K-IFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEE-  239 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~-  239 (513)
                      .+++|+|++|+|||||++.++......   . .....+|+.-....... -...+.+.++....          ..... 
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNSNH  104 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTSCHHHHHHTEEEEECCSHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhhcEEEEecCChHH
Confidence            899999999999999999998854431   1 12345666544333322 23344444433210          11111 


Q ss_pred             --HHHHHHHHHHH-hc--cCCeEEEEEecCCCc
Q 044393          240 --ERADRLRLMFS-ES--KGRKILIILDDVWKE  267 (513)
Q Consensus       240 --~~~~~l~~~~~-l~--~~~~~LlVLDd~~~~  267 (513)
                        .....+...+. ..  ..+.-+||||++...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~  137 (231)
T 4a74_A          105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH  137 (231)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred             HHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence              11222333111 11  347789999999765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.67  E-value=5.2e-05  Score=78.29  Aligned_cols=124  Identities=21%  Similarity=0.209  Sum_probs=69.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHHHHH--------------HHHhCC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQSEL--------------VKWLGW  231 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~~~i--------------~~~l~~  231 (513)
                      .+++|+|++|+|||||++.++.......   .+.. ...++.+..      ++.+.+...              ++.++.
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~-~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l  391 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL-TVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI  391 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECc-eEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            7999999999999999999999775421   1111 123344432      222222211              111121


Q ss_pred             CC------CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccC---CCCcEEEEEeCchHHHhhc
Q 044393          232 EL------KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------GIP---ANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       232 ~~------~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~---~~~~~iivTtr~~~v~~~~  295 (513)
                      ..      ...+- +...-.+..  .+.. ++-+|+||++.+..|....      ...   ..|..||++||+...+..+
T Consensus       392 ~~~~~~~~~~LSGGe~qrv~lAr--aL~~-~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~  468 (538)
T 1yqt_A          392 IDLYDREVNELSGGELQRVAIAA--TLLR-DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  468 (538)
T ss_dssp             GGGTTSBGGGCCHHHHHHHHHHH--HHTS-CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             hhhhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            10      01111 222222333  4444 7779999999999875432      111   1278999999998777655


Q ss_pred             CCcceeec
Q 044393          296 GCDTRIKL  303 (513)
Q Consensus       296 ~~~~~~~l  303 (513)
                      . .+.+.+
T Consensus       469 ~-drv~vl  475 (538)
T 1yqt_A          469 S-DRLMVF  475 (538)
T ss_dssp             C-SEEEEE
T ss_pred             C-CEEEEE
Confidence            3 344444

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.67  E-value=8.4e-05  Score=77.65  Aligned_cols=124  Identities=22%  Similarity=0.216  Sum_probs=71.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHH--------------HHHHHHhCC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQ--------------SELVKWLGW  231 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~--------------~~i~~~l~~  231 (513)
                      .+++|+|++|+|||||++.++.......   .+.. ...++.|..      ++.+.+              .++++.++.
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~-~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l  461 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL-TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI  461 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCC-CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEee-EEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            7999999999999999999999765421   1111 123344432      222221              223334443


Q ss_pred             CCC------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccC---CCCcEEEEEeCchHHHhhc
Q 044393          232 ELK------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIP---ANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       232 ~~~------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~---~~~~~iivTtr~~~v~~~~  295 (513)
                      ...      ..+..+ ..-.+..  .+.. ++-+|+||++.+.+|....      ...   ..|..||++||+...+..+
T Consensus       462 ~~~~~~~~~~LSGGe~QRv~iAr--aL~~-~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~  538 (607)
T 3bk7_A          462 IDLYDRNVEDLSGGELQRVAIAA--TLLR-DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  538 (607)
T ss_dssp             TTTTTSBGGGCCHHHHHHHHHHH--HHTS-CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             chHhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            211      112212 2222222  4444 6779999999999875432      111   1378999999998777655


Q ss_pred             CCcceeec
Q 044393          296 GCDTRIKL  303 (513)
Q Consensus       296 ~~~~~~~l  303 (513)
                      . .+.+.+
T Consensus       539 a-drv~vl  545 (607)
T 3bk7_A          539 S-DRLIVF  545 (607)
T ss_dssp             C-SEEEEE
T ss_pred             C-CEEEEE
Confidence            3 344444

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.66  E-value=0.00016  Score=67.15  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.++.-..
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            8999999999999999999987654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.65  E-value=4.2e-05  Score=71.10  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=25.4

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.++.-...
T Consensus        30 i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p   59 (257)
T 1g6h_A           30 VNKG--DVTLIIGPNGSGKSTLINVITGFLKA   59 (257)
T ss_dssp             EETT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3445  89999999999999999999887653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.65  E-value=0.00018  Score=62.79  Aligned_cols=25  Identities=40%  Similarity=0.499  Sum_probs=22.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++|+|++|+|||||++.+++....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999988753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.64  E-value=8.5e-05  Score=72.15  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~p   57 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDVP   57 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            89999999999999999999987653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.64  E-value=0.00015  Score=70.87  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p   55 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEEP   55 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCCC
Confidence            79999999999999999999987653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.63  E-value=5.4e-05  Score=70.90  Aligned_cols=26  Identities=46%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .-+.|+|++|+|||+||+.+++....
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~   70 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHV   70 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            44789999999999999999987653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.57  E-value=0.00049  Score=65.77  Aligned_cols=46  Identities=26%  Similarity=0.337  Sum_probs=35.9

Q ss_pred             ccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          155 FETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++|.+..++.+...+...         ....+.|+|++|+||||+|+.+++....
T Consensus        19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence            457777777777777542         1257999999999999999999998754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.52  E-value=0.0022  Score=68.66  Aligned_cols=148  Identities=18%  Similarity=0.162  Sum_probs=83.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      ++-|.++||+|+|||+||+.+++.....     .+.++.+          ++.    ....+.+.........   ....
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~----------~l~----sk~~gese~~lr~lF~---~A~~  295 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP----------EIM----SKLAGESESNLRKAFE---EAEK  295 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHH----------HHH----SSCTTHHHHHHHHHHH---HHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhH----------Hhh----cccchHHHHHHHHHHH---HHHH
Confidence            4679999999999999999999887542     2223211          111    1111111122222222   3334


Q ss_pred             CCeEEEEEecCCCccc-------------ccccc---cC---CCCcEEEEEeCchHHH-hhc----CCcceeecCCCChH
Q 044393          254 GRKILIILDDVWKELD-------------LETVG---IP---ANCCKILLTTRLQQVC-DRM----GCDTRIKLDALDQA  309 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~-------------~~~l~---~~---~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~  309 (513)
                      ..+++|+||+++....             ...+.   ..   .++..||.||...+.. ..+    .-...+.+...+.+
T Consensus       296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~  375 (806)
T 3cf2_A          296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT  375 (806)
T ss_dssp             SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred             cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence            5789999999864311             11111   11   1145566666654322 111    12357889999999


Q ss_pred             hHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          310 EGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       310 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      +-.++|+.+........+  -....|++++.|..-|
T Consensus       376 ~R~~IL~~~l~~~~~~~d--vdl~~lA~~T~Gfsga  409 (806)
T 3cf2_A          376 GRLEILQIHTKNMKLADD--VDLEQVANETHGHVGA  409 (806)
T ss_dssp             HHHHHHHHTCSSSEECTT--CCHHHHHHHCCSCCHH
T ss_pred             HHHHHHHHHhcCCCCCcc--cCHHHHHHhcCCCCHH
Confidence            999999887653221111  1246688889887643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.52  E-value=7.1e-05  Score=77.11  Aligned_cols=125  Identities=18%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCeEEEEEEcCCC------ChHHHHHH---------------HHHHhC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDEVGIATVSQDP------DIINVQSE---------------LVKWLG  230 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~------~~~~~~~~---------------i~~~l~  230 (513)
                      .+++|+|++|+|||||++.++...+...   .+......++++..      ++.+.+..               +++.++
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~  374 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN  374 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence            7999999999999999999998775431   11111122333322      22222211               111111


Q ss_pred             CCC------CCCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------cc---CCCCcEEEEEeCchHHHhh
Q 044393          231 WEL------KEKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------GI---PANCCKILLTTRLQQVCDR  294 (513)
Q Consensus       231 ~~~------~~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~---~~~~~~iivTtr~~~v~~~  294 (513)
                      ...      ...+- +...-.+..  .+.. ++-+|+||++.+.+|....      ..   ...|..||++||+...+..
T Consensus       375 l~~~~~~~~~~LSGGq~QRv~iAr--aL~~-~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~  451 (538)
T 3ozx_A          375 LHRLLESNVNDLSGGELQKLYIAA--TLAK-EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY  451 (538)
T ss_dssp             GGGCTTSBGGGCCHHHHHHHHHHH--HHHS-CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CHHHhcCChhhCCHHHHHHHHHHH--HHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            110      01111 112222222  4444 6779999999999875432      11   1137899999999887766


Q ss_pred             cCCcceeec
Q 044393          295 MGCDTRIKL  303 (513)
Q Consensus       295 ~~~~~~~~l  303 (513)
                      +. .+.+.+
T Consensus       452 ~a-Dri~vl  459 (538)
T 3ozx_A          452 IA-DRIIVF  459 (538)
T ss_dssp             HC-SEEEEE
T ss_pred             hC-CEEEEE
Confidence            53 344444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.51  E-value=8.5e-05  Score=76.68  Aligned_cols=122  Identities=22%  Similarity=0.214  Sum_probs=68.9

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-C-----------CCe--------------EEEEEEcCCC------
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-I-----------FDE--------------VGIATVSQDP------  216 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~-----------f~~--------------~~wv~~~~~~------  216 (513)
                      +..+  .+++|+|++|+|||||++.++....... .           +..              .....+.+..      
T Consensus        44 i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~  121 (538)
T 1yqt_A           44 VKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKA  121 (538)
T ss_dssp             CCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGG
T ss_pred             CCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchh
Confidence            3445  8999999999999999999988654311 0           100              0001112211      


Q ss_pred             ---ChHH---------HHHHHHHHhCCCCCC------CCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc----
Q 044393          217 ---DIIN---------VQSELVKWLGWELKE------KDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV----  273 (513)
Q Consensus       217 ---~~~~---------~~~~i~~~l~~~~~~------~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l----  273 (513)
                         +..+         ...++++.++.....      .+. +...-.+..  .+.. ++-+|+||++.+.+|....    
T Consensus       122 ~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAr--aL~~-~P~lLlLDEPTs~LD~~~~~~l~  198 (538)
T 1yqt_A          122 VKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAA--ALLR-NATFYFFDEPSSYLDIRQRLNAA  198 (538)
T ss_dssp             CCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHH--HHHS-CCSEEEEESTTTTCCHHHHHHHH
T ss_pred             hhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHH--HHhc-CCCEEEEECCcccCCHHHHHHHH
Confidence               1111         123556666653211      122 222222333  4444 7779999999999874421    


Q ss_pred             --cc--CCCCcEEEEEeCchHHHhhc
Q 044393          274 --GI--PANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       274 --~~--~~~~~~iivTtr~~~v~~~~  295 (513)
                        ..  ...|..||++||+......+
T Consensus       199 ~~L~~l~~~g~tvi~vsHd~~~~~~~  224 (538)
T 1yqt_A          199 RAIRRLSEEGKSVLVVEHDLAVLDYL  224 (538)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence              11  11388999999998776554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.51  E-value=0.00024  Score=77.46  Aligned_cols=122  Identities=17%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             HHhcCCccEEEEEcCCCChHHHHHHHHHhH-hhhcCCCCeEEEEEEcCCC-------ChH-----------HHHHHHHHH
Q 044393          168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ-LRQEKIFDEVGIATVSQDP-------DII-----------NVQSELVKW  228 (513)
Q Consensus       168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~-~~~~~~f~~~~wv~~~~~~-------~~~-----------~~~~~i~~~  228 (513)
                      .+..|  .+++|+|++|+|||||++.+++- ............+++.+..       +..           ....++++.
T Consensus       457 ~I~~G--e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~  534 (986)
T 2iw3_A          457 RLKRA--RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE  534 (986)
T ss_dssp             EEETT--CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred             EEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence            34455  89999999999999999999842 1000000000123333321       111           223445555


Q ss_pred             hCCCC-------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccCCCCcEEEEEeCchHHHhh
Q 044393          229 LGWEL-------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIPANCCKILLTTRLQQVCDR  294 (513)
Q Consensus       229 l~~~~-------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~~~~~~iivTtr~~~v~~~  294 (513)
                      ++...       ...+..+ ..-.+..  .+.. ++-+|+||++.+.+|....      ... .|..||++||+......
T Consensus       535 lgL~~~~~~~~~~~LSGGqkQRvaLAr--AL~~-~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~  610 (986)
T 2iw3_A          535 FGFTDEMIAMPISALSGGWKMKLALAR--AVLR-NADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDN  610 (986)
T ss_dssp             TTCCHHHHHSBGGGCCHHHHHHHHHHH--HHHT-TCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHH
T ss_pred             cCCChhhhcCCcccCCHHHHHHHHHHH--HHhc-CCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHH
Confidence            55521       1112211 2222222  3443 6779999999998874321      222 48899999999877655


Q ss_pred             c
Q 044393          295 M  295 (513)
Q Consensus       295 ~  295 (513)
                      +
T Consensus       611 ~  611 (986)
T 2iw3_A          611 V  611 (986)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.00027  Score=73.70  Aligned_cols=126  Identities=18%  Similarity=0.190  Sum_probs=70.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCC--CeEEEEEEcCCC------ChHH--------------HHHHHHHHhCCC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF--DEVGIATVSQDP------DIIN--------------VQSELVKWLGWE  232 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~------~~~~--------------~~~~i~~~l~~~  232 (513)
                      .+++|+|++|+|||||++.++...+....-  ...-..++.+..      ++.+              ....+++.++..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            689999999999999999999877653211  000112222221      1111              122334444432


Q ss_pred             C------CCCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccC---CCCcEEEEEeCchHHHhhcC
Q 044393          233 L------KEKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETV------GIP---ANCCKILLTTRLQQVCDRMG  296 (513)
Q Consensus       233 ~------~~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~---~~~~~iivTtr~~~v~~~~~  296 (513)
                      .      ...+-.+ ..-.+..  .+.. ++-+|+||++.+.+|....      ...   ..|..||++||+...+..+.
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAr--aL~~-~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a  535 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVL--ALGI-PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA  535 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHH--HTTS-CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred             hhhcCChhhCCHHHHHHHHHHH--HHHh-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            1      1112222 2222232  4444 7779999999998874322      111   12889999999987776653


Q ss_pred             CcceeecC
Q 044393          297 CDTRIKLD  304 (513)
Q Consensus       297 ~~~~~~l~  304 (513)
                       .+.+.+.
T Consensus       536 -Drvivl~  542 (608)
T 3j16_B          536 -DKVIVFE  542 (608)
T ss_dssp             -SEEEECE
T ss_pred             -CEEEEEe
Confidence             3455443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.00026  Score=73.89  Aligned_cols=26  Identities=31%  Similarity=0.636  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+......
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            89999999999999999999886643

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.44  E-value=5.6e-05  Score=79.04  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+.+...+
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~~p  393 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFYDV  393 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            89999999999999999999877654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.44  E-value=0.0013  Score=62.36  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=23.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..+.++||+|+|||+||+.+++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46788999999999999999999884

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.40  E-value=0.00022  Score=73.43  Aligned_cols=25  Identities=36%  Similarity=0.670  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.++....
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            8999999999999999999988654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.37  E-value=0.00045  Score=65.61  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ++.+..-+..+  .+++|+|++|+|||||++.++......
T Consensus        25 Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           25 INDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             HHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            45555445556  899999999999999999999887754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.35  E-value=0.0024  Score=66.02  Aligned_cols=46  Identities=30%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             ccchhHHHHHHHHHHh------cCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          155 FETTKSACNQITEALK------KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|-+...+.+...+.      ......+.++|++|+||||||+.+++....
T Consensus        83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A           83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4455555555433321      123478999999999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.35  E-value=0.00016  Score=71.12  Aligned_cols=29  Identities=38%  Similarity=0.493  Sum_probs=24.5

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..+  .+++|+|++|+|||||++.++.-..
T Consensus        44 i~~G--e~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           44 ISPG--QRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             ECTT--CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             EcCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence            3445  8999999999999999999987543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.34  E-value=7.1e-05  Score=78.37  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+.+-..+
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~~p  395 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFYDI  395 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccCC
Confidence            89999999999999999999887654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.32  E-value=0.00027  Score=67.52  Aligned_cols=53  Identities=19%  Similarity=0.190  Sum_probs=36.4

Q ss_pred             hhHHHHHHHHHHhcC---CccEEEEEcCCCChHHHHHHHHHhHhh-hcCCCCeEEEEEE
Q 044393          158 TKSACNQITEALKKG---STKMVGLHGLGGVGKTTLAKFVGNQLR-QEKIFDEVGIATV  212 (513)
Q Consensus       158 r~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~  212 (513)
                      +...+..+..++...   ....+.|+|++|+|||+||..+++... .. .+ .+.++++
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~  189 (308)
T 2qgz_A          133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF  189 (308)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence            444555566666542   137899999999999999999999876 43 22 3444543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.31  E-value=0.0023  Score=64.69  Aligned_cols=49  Identities=29%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             ccccccchhHHHHHHH---HHHhcCC--ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          151 FFSSFETTKSACNQIT---EALKKGS--TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~---~~l~~~~--~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+..++|.+..++.+.   ..+..+.  .+-+.++||+|+|||+||+.+++...
T Consensus        35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            3466778887766544   3444442  25789999999999999999998875

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.31  E-value=0.0004  Score=68.59  Aligned_cols=91  Identities=14%  Similarity=0.090  Sum_probs=52.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc----CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE----KIFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEEE  240 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~  240 (513)
                      .++.|+|++|+|||||+..++-.....    ..-..++|+.....+.... +..+++.++....          ......
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~~~  257 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNADH  257 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCChHH
Confidence            799999999999999999776332211    1234577776655554443 3345555554211          111222


Q ss_pred             ---HHHHHHHHHHhccCCeEEEEEecCCCcc
Q 044393          241 ---RADRLRLMFSESKGRKILIILDDVWKEL  268 (513)
Q Consensus       241 ---~~~~l~~~~~l~~~~~~LlVLDd~~~~~  268 (513)
                         ....+..  .+...+.-+||+|.+....
T Consensus       258 ~~~~l~~~~~--~l~~~~~~llVIDs~t~~~  286 (400)
T 3lda_A          258 QLRLLDAAAQ--MMSESRFSLIVVDSVMALY  286 (400)
T ss_dssp             HHHHHHHHHH--HHHHSCEEEEEEETGGGGC
T ss_pred             HHHHHHHHHH--HHHhcCCceEEecchhhhC
Confidence               2222222  2223367899999986543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.30  E-value=0.00017  Score=75.38  Aligned_cols=29  Identities=45%  Similarity=0.682  Sum_probs=24.8

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..+  .+++|+|++|+|||||++.++....
T Consensus       114 i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          114 VKDG--MVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             CCTT--SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence            3445  8999999999999999999987654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.30  E-value=0.00014  Score=76.38  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+.+-..+
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~p  407 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYDV  407 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            89999999999999999999887654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.28  E-value=6.2e-05  Score=73.24  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHH-HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIIN-VQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+++|+|++|+|||||++.+.+......  ...+ +++.+...... -....+.+...   ..........+..  .+..
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i-~t~ed~~e~~~~~~~~~v~q~~~---~~~~~~~~~~La~--aL~~  195 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHI-LTIEDPIEFVHESKKCLVNQREV---HRDTLGFSEALRS--ALRE  195 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEE-EEEESSCCSCCCCSSSEEEEEEB---TTTBSCHHHHHHH--HTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCC--CcEE-EEccCcHHhhhhccccceeeeee---ccccCCHHHHHHH--Hhhh
Confidence            6999999999999999999988776531  1111 22222111000 00000000000   0000112234444  4554


Q ss_pred             CCeEEEEEecCCCcccccccc-cCCCCcEEEEEeCchHHH
Q 044393          254 GRKILIILDDVWKELDLETVG-IPANCCKILLTTRLQQVC  292 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~~~~l~-~~~~~~~iivTtr~~~v~  292 (513)
                       .+=+|++|++.+......+. ....|..||+|||..+..
T Consensus       196 -~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          196 -DPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA  234 (356)
T ss_dssp             -CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred             -CcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence             77899999998765544422 222377899999987654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.27  E-value=0.0025  Score=59.68  Aligned_cols=122  Identities=20%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-hccC
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFS-ESKG  254 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~-l~~~  254 (513)
                      -+.|+|++|+|||||++.+++.....     .+.+....-.+                  ....+....+..++. ....
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~~~-----~i~i~g~~l~~------------------~~~~~~~~~i~~vf~~a~~~  102 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESGLN-----FISVKGPELLN------------------MYVGESERAVRQVFQRAKNS  102 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTCE-----EEEEETTTTCS------------------STTHHHHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcCCC-----EEEEEcHHHHh------------------hhhhHHHHHHHHHHHHHHhc
Confidence            39999999999999999999876532     22332211110                  000111112222222 1123


Q ss_pred             CeEEEEEecCCCccc---------ccc----cc---cCC---CCcEEEEEeCchHHHhh--c---CCcceeecCCCChHh
Q 044393          255 RKILIILDDVWKELD---------LET----VG---IPA---NCCKILLTTRLQQVCDR--M---GCDTRIKLDALDQAE  310 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~---------~~~----l~---~~~---~~~~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~e  310 (513)
                      .++++++|++.....         ...    +.   ...   ...-++.+|..+.+.+.  .   .-...+.+...+.++
T Consensus       103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~  182 (274)
T 2x8a_A          103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD  182 (274)
T ss_dssp             CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred             CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence            678999999864311         000    00   000   13446667766544322  1   234678888889999


Q ss_pred             HHHHHHHhcC
Q 044393          311 GLDLLREHAG  320 (513)
Q Consensus       311 ~~~lf~~~~~  320 (513)
                      -.++|+....
T Consensus       183 r~~il~~~~~  192 (274)
T 2x8a_A          183 RLAILKTITK  192 (274)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999987764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.26  E-value=0.00036  Score=73.00  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+.+-..+
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~~~  395 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLIDP  395 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccC
Confidence            89999999999999999999876653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.19  E-value=0.00042  Score=66.84  Aligned_cols=116  Identities=19%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEE  240 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~  240 (513)
                      .++.+...+..+  ..++|+|++|+|||||++.+.+.....   ...+.+.-........ ..   +.++. ..+ ....
T Consensus       160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~-~~---~~i~~-~~g-gg~~  228 (330)
T 2pt7_A          160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKH-HK---NYTQL-FFG-GNIT  228 (330)
T ss_dssp             HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSS-CS---SEEEE-ECB-TTBC
T ss_pred             HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeecccccc-ch---hEEEE-EeC-CChh
Confidence            456666667777  799999999999999999999887643   2233332111110000 00   00000 000 1112


Q ss_pred             HHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCC-cEEEEEeCchH
Q 044393          241 RADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANC-CKILLTTRLQQ  290 (513)
Q Consensus       241 ~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~-~~iivTtr~~~  290 (513)
                      ....+..  .+.. ++-+|++|++.....++.+.....| ..+|+|||...
T Consensus       229 ~r~~la~--aL~~-~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~  276 (330)
T 2pt7_A          229 SADCLKS--CLRM-RPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS  276 (330)
T ss_dssp             HHHHHHH--HTTS-CCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             HHHHHHH--Hhhh-CCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH
Confidence            2333333  4444 7778999999875443333222223 35888998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.17  E-value=0.00052  Score=74.80  Aligned_cols=51  Identities=18%  Similarity=0.242  Sum_probs=34.1

Q ss_pred             HhccCCeEEEEEecCCCcccccccc------cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393          250 SESKGRKILIILDDVWKELDLETVG------IPANCCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       250 ~l~~~~~~LlVLDd~~~~~~~~~l~------~~~~~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      .+.. ++-+||||++.+.+|.....      ... +..||++||+.+....+. .+.+.+
T Consensus       915 AL~~-~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-g~tVIiISHD~e~v~~l~-DrVivL  971 (986)
T 2iw3_A          915 GTWQ-RPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIIITHSAEFTKNLT-EEVWAV  971 (986)
T ss_dssp             HHTT-CCSEEEEECGGGTCCHHHHHHHHHHHHSC-SSEEEEECSCHHHHTTTC-CEEECC
T ss_pred             HHHh-CCCEEEEECCccCCCHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhC-CEEEEE
Confidence            3444 77799999999988754331      111 568999999987766542 344444

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.15  E-value=0.0015  Score=62.20  Aligned_cols=45  Identities=20%  Similarity=0.236  Sum_probs=33.5

Q ss_pred             ccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          155 FETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++|+...+..+...+..  .....|.|+|++|+|||++|+.+++...
T Consensus         4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A            4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            45777777766666533  2236788999999999999999998653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.15  E-value=0.0009  Score=72.42  Aligned_cols=141  Identities=16%  Similarity=0.220  Sum_probs=77.3

Q ss_pred             cccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH
Q 044393          154 SFETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE  224 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~  224 (513)
                      .++|.+..++.+...+...         ....+.++|++|+|||+||+.+++.....  -...+.++++......     
T Consensus       492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~-----  564 (758)
T 3pxi_A          492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH-----  564 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC-----
T ss_pred             cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc-----
Confidence            4668888887777776421         11269999999999999999999987432  1223444444322110     


Q ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccc--ccc------CCCCcEEEEEeC
Q 044393          225 LVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LET--VGI------PANCCKILLTTR  287 (513)
Q Consensus       225 i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~--l~~------~~~~~~iivTtr  287 (513)
                               .. ........++      .....+|+||++.....         ++.  +..      ...+..||+||.
T Consensus       565 ---------~~-~~~~l~~~~~------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn  628 (758)
T 3pxi_A          565 ---------ST-SGGQLTEKVR------RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN  628 (758)
T ss_dssp             ---------CC-C---CHHHHH------HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred             ---------cc-ccchhhHHHH------hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence                     00 0001111111      12445999999965421         111  101      122678899988


Q ss_pred             ch-----------------HHHhhcCCcceeecCCCChHhHHHHHHHhc
Q 044393          288 LQ-----------------QVCDRMGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       288 ~~-----------------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      ..                 .+...+  ...+.+.+++.++-..++...+
T Consensus       629 ~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          629 VGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             SSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence            31                 111222  2578888998888777776543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.13  E-value=0.0003  Score=59.89  Aligned_cols=40  Identities=33%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      |....+..+...+..+  .+++|+|++|+|||||++.++...
T Consensus        18 g~~~~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           18 GKKFAEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHHHHHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC
Confidence            3333444444444555  899999999999999999999987

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.11  E-value=0.00078  Score=71.75  Aligned_cols=45  Identities=13%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             EEEEEecCCCcccccccc--------cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393          257 ILIILDDVWKELDLETVG--------IPANCCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       257 ~LlVLDd~~~~~~~~~l~--------~~~~~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      -+|+||++.+.+|.....        ....|..||++||+..++..  +.+.+.+
T Consensus       224 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~ii~l  276 (670)
T 3ux8_A          224 VLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA--ADYLIDI  276 (670)
T ss_dssp             CEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence            499999999988744321        11127899999999887653  4455555

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.11  E-value=0.0016  Score=63.10  Aligned_cols=84  Identities=24%  Similarity=0.264  Sum_probs=53.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~  248 (513)
                      .++.|+|++|+|||||+..++.......  ..++|+.....++..     .++.++....      ..+.++....+..+
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l  134 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL  134 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence            7999999999999999999998876432  346677665555543     4555554322      23344444555542


Q ss_pred             HHhccCCeEEEEEecCCCc
Q 044393          249 FSESKGRKILIILDDVWKE  267 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~~  267 (513)
                        ....+.-++|+|.+...
T Consensus       135 --~~~~~~dlvVIDSi~~l  151 (356)
T 3hr8_A          135 --VRSGVVDLIVVDSVAAL  151 (356)
T ss_dssp             --HHTSCCSEEEEECTTTC
T ss_pred             --hhhcCCCeEEehHhhhh
Confidence              22235568999987543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.08  E-value=0.00066  Score=65.99  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh--hcC-CC-CeEEEEEEcCCCChHHHHHHHHHHhCCCC----------CCCCH--
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR--QEK-IF-DEVGIATVSQDPDIINVQSELVKWLGWEL----------KEKDE--  238 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~--~~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~--  238 (513)
                      .++.|+|++|+|||||+..++....  ... .. ..++|++....+.... +..+++.++...          .....  
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~  210 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNH  210 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence            8999999999999999999998762  211 11 2346776554433222 333444333211          01111  


Q ss_pred             -HHHHHHHHHHHHhc-c--CCeEEEEEecCCCccc
Q 044393          239 -EERADRLRLMFSES-K--GRKILIILDDVWKELD  269 (513)
Q Consensus       239 -~~~~~~l~~~~~l~-~--~~~~LlVLDd~~~~~~  269 (513)
                       .+....+..++.-. +  .+.-+||+|.+....+
T Consensus       211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld  245 (349)
T 1pzn_A          211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR  245 (349)
T ss_dssp             HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred             HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence             12233333321111 0  3678999999987653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.06  E-value=0.0022  Score=61.13  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=25.1

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...+|+|+|++|+|||||++.+......
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            3479999999999999999999998765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.02  E-value=0.0021  Score=62.40  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=53.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~  248 (513)
                      .++.|+|++|+|||||+.+++......  -..++|+.....++..     .++.++....      ..+.++....+.. 
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~-  133 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM-  133 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH-
Confidence            799999999999999999998776543  2356778776655543     2455554321      1233444444443 


Q ss_pred             HHhccCCeEEEEEecCCCc
Q 044393          249 FSESKGRKILIILDDVWKE  267 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~~  267 (513)
                       .....+.-+||+|.+...
T Consensus       134 -l~~~~~~~lIVIDsl~~l  151 (349)
T 2zr9_A          134 -LVRSGALDIIVIDSVAAL  151 (349)
T ss_dssp             -HHTTTCCSEEEEECGGGC
T ss_pred             -HHhcCCCCEEEEcChHhh
Confidence             222335679999998654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.99  E-value=0.0074  Score=61.27  Aligned_cols=144  Identities=24%  Similarity=0.209  Sum_probs=77.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhc-c
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSES-K  253 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~-~  253 (513)
                      +-+.|+|++|+||||||+.+++.....     .+.++.+.-..              ..    .......++.++... .
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~~~-----~i~i~g~~~~~--------------~~----~g~~~~~v~~lfq~a~~  121 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEARVP-----FITASGSDFVE--------------MF----VGVGAARVRDLFETAKR  121 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTTCC-----EEEEEGGGGTS--------------SC----TTHHHHHHHHHTTTSSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEehhHHHH--------------hh----hhhHHHHHHHHHHHHHh
Confidence            348999999999999999999876421     22333221100              00    001122233322222 1


Q ss_pred             CCeEEEEEecCCCccc----------------ccccc---cCC--C-CcEEEEEeCchHHHhh-c----CCcceeecCCC
Q 044393          254 GRKILIILDDVWKELD----------------LETVG---IPA--N-CCKILLTTRLQQVCDR-M----GCDTRIKLDAL  306 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~----------------~~~l~---~~~--~-~~~iivTtr~~~v~~~-~----~~~~~~~l~~L  306 (513)
                      ..+.++++||+.....                +..+.   ...  . +..|+.+|..+...+. +    .....+.+...
T Consensus       122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P  201 (499)
T 2dhr_A          122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP  201 (499)
T ss_dssp             SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred             cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence            2458999999853210                11111   111  1 4456666766554221 1    12357888888


Q ss_pred             ChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          307 DQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      +.++-.++++.++......++  .....|++.+.|+.
T Consensus       202 d~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~  236 (499)
T 2dhr_A          202 DVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV  236 (499)
T ss_dssp             CHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred             CHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence            988888888876642111111  12455777888876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.99  E-value=0.00064  Score=60.86  Aligned_cols=41  Identities=29%  Similarity=0.498  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.|...+..  ....+|+|+|++|+|||||++.+......
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            455566665542  34589999999999999999999998874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.98  E-value=0.0012  Score=61.97  Aligned_cols=25  Identities=32%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.|+|++|+|||||+..++....
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            8999999999999999999987654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.91  E-value=0.00049  Score=63.41  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=24.4

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      |....++.+...+..+  .+|+|.|++|+|||||++.+....
T Consensus        10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -------------CCS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445666776666666  899999999999999999998865

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.87  E-value=0.007  Score=57.04  Aligned_cols=87  Identities=10%  Similarity=0.056  Sum_probs=55.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHH-HHHHHHH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEER-ADRLRLM  248 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~-~~~l~~~  248 (513)
                      ++-|.|++|+|||||+.+++........-..++|++....++..     .++.++...+      ..+.++. ...+..+
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l  104 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL  104 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence            78999999999999999887766543112456787776666643     3667776432      2233444 3333321


Q ss_pred             HHhccCCeEEEEEecCCCc
Q 044393          249 FSESKGRKILIILDDVWKE  267 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~~  267 (513)
                      -....++.-|+|+|-+...
T Consensus       105 ~~i~~~~~~lvVIDSI~aL  123 (333)
T 3io5_A          105 DAIERGEKVVVFIDSLGNL  123 (333)
T ss_dssp             HTCCTTCCEEEEEECSTTC
T ss_pred             HHhhccCceEEEEeccccc
Confidence            1134567889999988654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.85  E-value=0.0013  Score=58.48  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHHhc---CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          158 TKSACNQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       158 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      |.+.++.|...+..   ....+|+|+|++|+|||||++.+......
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45566777776653   33479999999999999999999987754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.83  E-value=0.001  Score=72.68  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVG  195 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~  195 (513)
                      ..+++|+||+|+||||+++.+.
T Consensus       662 g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4899999999999999999983

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.0028  Score=58.10  Aligned_cols=37  Identities=19%  Similarity=0.030  Sum_probs=27.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS  213 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~  213 (513)
                      .++.|.|++|+|||||+.+++......  -..++|+...
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e   60 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALE   60 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence            799999999999999998887665433  2345555543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.83  E-value=0.00077  Score=69.57  Aligned_cols=48  Identities=19%  Similarity=0.273  Sum_probs=33.4

Q ss_pred             HHHHHHHH-HHhcCCccEEEEEcCCCChHHHHHHHH--HhHhhhcCCCCeEEEEEE
Q 044393          160 SACNQITE-ALKKGSTKMVGLHGLGGVGKTTLAKFV--GNQLRQEKIFDEVGIATV  212 (513)
Q Consensus       160 ~~~~~l~~-~l~~~~~~vi~I~G~~G~GKTtLa~~~--~~~~~~~~~f~~~~wv~~  212 (513)
                      ..++.+.. .+..+  .+++|+|++|+|||||++.+  ..-....   ...+++..
T Consensus        26 ~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g   76 (525)
T 1tf7_A           26 EGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTF   76 (525)
T ss_dssp             TTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEES
T ss_pred             hhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEE
Confidence            35666665 56666  89999999999999999994  4444422   23555543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.81  E-value=0.0041  Score=67.26  Aligned_cols=45  Identities=27%  Similarity=0.276  Sum_probs=34.6

Q ss_pred             cccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          154 SFETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++|.+..++.+...+...         ....+.++|++|+|||++|+.+++..
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            3567777777777666421         12379999999999999999999887

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.79  E-value=0.00057  Score=61.72  Aligned_cols=36  Identities=25%  Similarity=0.200  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -++.+...+..+  .+++|+|++|+|||||++.+....
T Consensus        12 ~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           12 SGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            345566666666  899999999999999999999876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.78  E-value=0.0045  Score=58.50  Aligned_cols=85  Identities=19%  Similarity=0.115  Sum_probs=46.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-CCChHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-DPDIINVQSELVKWLGWELK-EKDEEERADRLRLMFSE  251 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~~~l  251 (513)
                      ..+++|+|++|+||||++..++......... .+..+.... .....+.+....+..+.+.. ..+.......+.    .
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~----~  179 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE----L  179 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH----H
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH----H
Confidence            3799999999999999999999888753222 234444322 22233334443333443321 122233322222    2


Q ss_pred             ccCCeEEEEEecC
Q 044393          252 SKGRKILIILDDV  264 (513)
Q Consensus       252 ~~~~~~LlVLDd~  264 (513)
                      .. +.-++|+|-.
T Consensus       180 ~~-~~dlvIiDT~  191 (296)
T 2px0_A          180 FS-EYDHVFVDTA  191 (296)
T ss_dssp             GG-GSSEEEEECC
T ss_pred             hc-CCCEEEEeCC
Confidence            23 4558899944

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.76  E-value=0.0057  Score=59.21  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHH-
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEE-  239 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~-  239 (513)
                      .++.|+|++|+|||||+..++.......    .-..++|++....++...+. .++..++....          ..+.. 
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e~  201 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSEH  201 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHHH
Confidence            7999999999999999999987642211    12457788777766655443 34445543210          11111 


Q ss_pred             --HHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          240 --ERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       240 --~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                        .....+..++.-...+.-+||+|.+...
T Consensus       202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l  231 (343)
T 1v5w_A          202 QMELLDYVAAKFHEEAGIFKLLIIDSIMAL  231 (343)
T ss_dssp             HHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred             HHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence              2233333322211146779999988543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.76  E-value=0.0011  Score=55.42  Aligned_cols=45  Identities=24%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             ccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          155 FETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++|+...+..+...+..  ....-|.|+|++|+|||++|+.+++...
T Consensus         3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A            3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            46777777777766632  2225678999999999999999988654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.75  E-value=0.0048  Score=60.07  Aligned_cols=83  Identities=19%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~  248 (513)
                      .++.|.|++|+||||||..++......  -..++|++....++..     .++.++....      ..+.++....+.. 
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~-  146 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL-  146 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH-
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH-
Confidence            799999999999999999988776543  2357788877666543     2445554321      2334455555554 


Q ss_pred             HHhccCCeEEEEEecCCC
Q 044393          249 FSESKGRKILIILDDVWK  266 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~  266 (513)
                       ....+..-+||+|.+..
T Consensus       147 -l~~~~~~~lVVIDsl~~  163 (366)
T 1xp8_A          147 -LVRSGAIDVVVVDSVAA  163 (366)
T ss_dssp             -HHTTTCCSEEEEECTTT
T ss_pred             -HHhcCCCCEEEEeChHH
Confidence             22233556999998854

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.74  E-value=0.00097  Score=63.08  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      +++.|+|++|+||||||.+++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            67889999999999999999886

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.74  E-value=0.031  Score=53.98  Aligned_cols=158  Identities=12%  Similarity=0.011  Sum_probs=94.4

Q ss_pred             HHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Q 044393          167 EALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLR  246 (513)
Q Consensus       167 ~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~  246 (513)
                      ..+.+.-.++..++|+.|.||++.+..+....... .|+....+.+....++.++...                    +.
T Consensus        11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~--------------------~~   69 (343)
T 1jr3_D           11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSL--------------------CQ   69 (343)
T ss_dssp             HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHH--------------------HH
T ss_pred             HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHH--------------------hc
Confidence            33433345799999999999999999998876543 2432222223333333332222                    11


Q ss_pred             HHHHhccCCeEEEEEecCCC-c--cccccc----ccCCCCcEEEEEeCc-------hHHHhhcC-CcceeecCCCChHhH
Q 044393          247 LMFSESKGRKILIILDDVWK-E--LDLETV----GIPANCCKILLTTRL-------QQVCDRMG-CDTRIKLDALDQAEG  311 (513)
Q Consensus       247 ~~~~l~~~~~~LlVLDd~~~-~--~~~~~l----~~~~~~~~iivTtr~-------~~v~~~~~-~~~~~~l~~L~~~e~  311 (513)
                      . ..+. +++-++|+|++.. .  .....+    ..+.+++.+|+++..       ..+...+. ....++..+++.++.
T Consensus        70 ~-~plf-~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l  147 (343)
T 1jr3_D           70 A-MSLF-ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL  147 (343)
T ss_dssp             H-HHHC-CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred             C-cCCc-cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence            1 0333 3677889999865 2  222222    233346777766643       23444432 336789999999999


Q ss_pred             HHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHH
Q 044393          312 LDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKV  348 (513)
Q Consensus       312 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~  348 (513)
                      ...+.+.+...... -..+.+..+++.++|.+..+..
T Consensus       148 ~~~l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~  183 (343)
T 1jr3_D          148 PRWVAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQ  183 (343)
T ss_dssp             HHHHHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHH
Confidence            98888776422211 1256788899999998887654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.72  E-value=0.0018  Score=64.72  Aligned_cols=45  Identities=20%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             EEEEEecCCCccccccc------c-cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393          257 ILIILDDVWKELDLETV------G-IPANCCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       257 ~LlVLDd~~~~~~~~~l------~-~~~~~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      -+||||++.+..|....      . ....|..||++||+..++..  +..++.+
T Consensus       317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l  368 (415)
T 4aby_A          317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV  368 (415)
T ss_dssp             SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence            79999999998773322      1 11137899999999988753  4455555

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.70  E-value=0.014  Score=55.71  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW  228 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~  228 (513)
                      .++.+..-+..+  .++.|.|.+|+|||||+..++.....+.  ..++|++..  .+...+...++..
T Consensus        57 ~LD~~lgGl~~G--~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           57 ELDRMTYGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             HHHHHHSSBCTT--CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence            344444334445  8999999999999999999987765442  456665543  4555555555543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.64  E-value=0.0011  Score=59.16  Aligned_cols=29  Identities=31%  Similarity=0.219  Sum_probs=25.4

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.++.. ..
T Consensus        19 i~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p   47 (208)
T 3b85_A           19 IDTN--TIVFGLGPAGSGKTYLAMAKAVQ-AL   47 (208)
T ss_dssp             HHHC--SEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred             ccCC--CEEEEECCCCCCHHHHHHHHhcC-CC
Confidence            4566  89999999999999999999987 54

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.63  E-value=0.0011  Score=59.37  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=24.4

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..+  .+++|+|++|+|||||++.+.....
T Consensus        17 i~~G--ei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVG--RVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CC--CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4455  8999999999999999999998764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.62  E-value=0.0012  Score=58.65  Aligned_cols=36  Identities=28%  Similarity=0.257  Sum_probs=24.3

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+.+...+..+  .+|+|+|++|+||||+++.++....
T Consensus        15 ~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           15 TENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             ---------CC--CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34455445455  7999999999999999999998774

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.61  E-value=0.0018  Score=73.94  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=25.3

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.+.+...+
T Consensus       413 i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~  442 (1284)
T 3g5u_A          413 VKSG--QTVALVGNSGCGKSTTVQLMQRLYDP  442 (1284)
T ss_dssp             ECTT--CEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3445  89999999999999999999877654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.60  E-value=0.00096  Score=58.66  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .+++|+|++|+|||||++.+...
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            79999999999999999999876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.60  E-value=0.0034  Score=60.69  Aligned_cols=90  Identities=11%  Similarity=0.139  Sum_probs=50.7

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCCCChHHHHHHHHHHhCC----CCCCCCHHHH------
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQDPDIINVQSELVKWLGW----ELKEKDEEER------  241 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~------  241 (513)
                      ..+.++|+|++|+|||||++.+.+..... ..+.++ ++-+++.....   .++.+.+..    .....+....      
T Consensus       173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev---~~~~~~~~~~vV~atadep~~~r~~~a~~  248 (422)
T 3ice_A          173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEM  248 (422)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHH---HHHHTTCSSEEEEECTTSCHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHH---HHHHHHhCeEEEEeCCCCCHHHHHHHHHH
Confidence            34899999999999999999998876543 223333 56666544221   222222211    1111222111      


Q ss_pred             HHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          242 ADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       242 ~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      .-...+.+.- .|+.+||++||+...
T Consensus       249 alt~AEyfrd-~G~dVLil~DslTR~  273 (422)
T 3ice_A          249 VIEKAKRLVE-HKKDVIILLDSITRL  273 (422)
T ss_dssp             HHHHHHHHHH-TSCEEEEEEECHHHH
T ss_pred             HHHHHHHHHh-cCCCEEEEEeCchHH
Confidence            1112232332 469999999998554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.60  E-value=0.0057  Score=59.37  Aligned_cols=83  Identities=22%  Similarity=0.244  Sum_probs=52.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~  248 (513)
                      .++.|.|++|+||||||.+++......  -..++|++....++..     .++.++....      ..+.++....+..+
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l  136 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL  136 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence            799999999999999999998776543  2357788776666543     2445544321      12334444444432


Q ss_pred             HHhccCCeEEEEEecCCC
Q 044393          249 FSESKGRKILIILDDVWK  266 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~  266 (513)
                      .  ...+.-+||+|.+..
T Consensus       137 ~--~~~~~~lVVIDsl~~  152 (356)
T 1u94_A          137 A--RSGAVDVIVVDSVAA  152 (356)
T ss_dssp             H--HHTCCSEEEEECGGG
T ss_pred             H--hccCCCEEEEcCHHH
Confidence            1  123556999998754

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.58  E-value=0.0035  Score=54.79  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=56.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCC---------CCCCCCH-------
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGW---------ELKEKDE-------  238 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---------~~~~~~~-------  238 (513)
                      ..|.|++.+|.||||.|--++-+.-..+  ..+.++.+.... ...--..+++.++.         .......       
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a  105 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC  105 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence            5677777777999999988877766542  234444433321 11112223333321         0111111       


Q ss_pred             HHHHHHHHHHHHhccCCeEEEEEecCCCc-----cc---ccccc-cCCCCcEEEEEeCch
Q 044393          239 EERADRLRLMFSESKGRKILIILDDVWKE-----LD---LETVG-IPANCCKILLTTRLQ  289 (513)
Q Consensus       239 ~~~~~~l~~~~~l~~~~~~LlVLDd~~~~-----~~---~~~l~-~~~~~~~iivTtr~~  289 (513)
                      ......+.+  .+..++--|||||++...     .+   +-.+. .......||+|+|..
T Consensus       106 ~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a  163 (196)
T 1g5t_A          106 MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC  163 (196)
T ss_dssp             HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred             HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence            111222232  344445569999998442     22   22222 223388999999984

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.57  E-value=0.0032  Score=66.96  Aligned_cols=47  Identities=23%  Similarity=0.270  Sum_probs=32.4

Q ss_pred             CeEEEEEecCCCccccccc------c--cCCCCcEEEEEeCchHHHhhcCCcceeec
Q 044393          255 RKILIILDDVWKELDLETV------G--IPANCCKILLTTRLQQVCDRMGCDTRIKL  303 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~~l------~--~~~~~~~iivTtr~~~v~~~~~~~~~~~l  303 (513)
                      ++-+|+||++...+|....      .  ....|..||++||+..++..  +.+.+.|
T Consensus       564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~i~~l  618 (670)
T 3ux8_A          564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT--ADYIIDL  618 (670)
T ss_dssp             SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--CCEEEEe
Confidence            3579999999998763321      1  11128899999999887643  5566666

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.57  E-value=0.0028  Score=69.47  Aligned_cols=47  Identities=26%  Similarity=0.328  Sum_probs=36.4

Q ss_pred             cccchhHHHHHHHHHHhcC---------CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          154 SFETTKSACNQITEALKKG---------STKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++|.+..+..+...+...         ....+.|+|++|+|||++|+.+++....
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4578888888877776431         1247899999999999999999988743

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.56  E-value=0.011  Score=56.72  Aligned_cols=90  Identities=20%  Similarity=0.221  Sum_probs=54.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC----------CCCHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDIINVQSELVKWLGWELK----------EKDEEE  240 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~  240 (513)
                      .++.|+|++|+|||||+.+++.......    .-..++|++....++...+. ++++.++....          ..+.++
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~  186 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDH  186 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHH
Confidence            7999999999999999999987643210    12357788777666555544 34555544221          112222


Q ss_pred             ---HHHHHHHHHHhcc-CCeEEEEEecCCCc
Q 044393          241 ---RADRLRLMFSESK-GRKILIILDDVWKE  267 (513)
Q Consensus       241 ---~~~~l~~~~~l~~-~~~~LlVLDd~~~~  267 (513)
                         ....+..  .+.. .+.-+||+|.+...
T Consensus       187 ~~~~l~~l~~--~~~~~~~~~lvVIDsl~~l  215 (324)
T 2z43_A          187 QIAIVDDLQE--LVSKDPSIKLIVVDSVTSH  215 (324)
T ss_dssp             HHHHHHHHHH--HHHHCTTEEEEEETTTTHH
T ss_pred             HHHHHHHHHH--HHHhccCCCEEEEeCcHHH
Confidence               2333333  2222 46779999988543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.55  E-value=0.0014  Score=57.21  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.+.....
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            7999999999999999999988754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.54  E-value=0.0013  Score=58.52  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+++|+|++|+|||||++.+....
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            799999999999999999998875

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.53  E-value=0.0033  Score=68.41  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..+++|+||+|+|||||.+.+...
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHHHH
Confidence            479999999999999999988643

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.52  E-value=0.0008  Score=71.98  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+++|+|++|+|||||++.++.-.
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhhh
Confidence            799999999999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.51  E-value=0.0018  Score=61.26  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=31.7

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...++.+...+.++  .+++|+|++|+|||||++.+.+-.
T Consensus       113 ~~vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          113 INALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence            34566666666667  899999999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.51  E-value=0.0015  Score=58.03  Aligned_cols=25  Identities=40%  Similarity=0.545  Sum_probs=23.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+|+|+|++|+|||||++.+....
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4899999999999999999998876

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.49  E-value=0.0069  Score=60.44  Aligned_cols=91  Identities=20%  Similarity=0.225  Sum_probs=52.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCC-------CCCCCCHH-HH----
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGW-------ELKEKDEE-ER----  241 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~-~~----  241 (513)
                      +.++|+|++|+|||||++.+......+.. ...+++-+.+..+ ..+++.++...-..       .....++. ..    
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~  230 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL  230 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence            68999999999999999999887765422 3335555665543 23344444322000       01111111 11    


Q ss_pred             -HHHHHHHHHhccCCeEEEEEecCCC
Q 044393          242 -ADRLRLMFSESKGRKILIILDDVWK  266 (513)
Q Consensus       242 -~~~l~~~~~l~~~~~~LlVLDd~~~  266 (513)
                       .-.+.+.+.-..+++.||++||+..
T Consensus       231 ~~ltiAEyFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          231 TGLTMAEYFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred             HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence             1233443333246999999999954

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.49  E-value=0.027  Score=53.86  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=26.0

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ...+++|+|++|+||||+++.++......
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~  156 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH  156 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999988764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.48  E-value=0.0082  Score=57.56  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=52.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh-----------c-CCC--CeEEEEEEcCCCChHHHHHHHHHHhCCCC-------
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ-----------E-KIF--DEVGIATVSQDPDIINVQSELVKWLGWEL-------  233 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~-----------~-~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------  233 (513)
                      .++.|.|++|+||||||.+++.....           . +..  ..++|++....++...+. ++++.++...       
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l  177 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDNT  177 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHTE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcCE
Confidence            79999999999999999998875321           1 101  456777776666565544 3445554431       


Q ss_pred             ---CCCCHHH---HHHHHHHHHHhcc-CCeEEEEEecCCC
Q 044393          234 ---KEKDEEE---RADRLRLMFSESK-GRKILIILDDVWK  266 (513)
Q Consensus       234 ---~~~~~~~---~~~~l~~~~~l~~-~~~~LlVLDd~~~  266 (513)
                         ...+.+.   ....+..  .+.. .+.-+||+|.+..
T Consensus       178 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~lvVIDsl~~  215 (322)
T 2i1q_A          178 FVARAYNSDMQMLFAEKIED--LIQEGNNIKLVVIDSLTS  215 (322)
T ss_dssp             EEEECSSHHHHHHHHHTHHH--HHHTTCEEEEEEEECSSH
T ss_pred             EEEeCCCHHHHHHHHHHHHH--HHhhccCccEEEEECcHH
Confidence               1122222   2223333  2222 3567999998753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.45  E-value=0.013  Score=62.68  Aligned_cols=146  Identities=16%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+-|.++||+|+|||.||+.+++.....       ++.++.        .+++    ...-+.+.........   ....
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~--------~~l~----s~~vGese~~vr~lF~---~Ar~  568 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG--------PELL----TMWFGESEANVREIFD---KARQ  568 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH--------HHHH----TTTCSSCHHHHHHHHH---HHHT
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc--------chhh----ccccchHHHHHHHHHH---HHHH
Confidence            3568899999999999999999987643       222221        1111    1222333333222222   3334


Q ss_pred             CCeEEEEEecCCCccc----------------ccccc---cCC-C--CcEEEEEeCchH-----HHhhcCCcceeecCCC
Q 044393          254 GRKILIILDDVWKELD----------------LETVG---IPA-N--CCKILLTTRLQQ-----VCDRMGCDTRIKLDAL  306 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~----------------~~~l~---~~~-~--~~~iivTtr~~~-----v~~~~~~~~~~~l~~L  306 (513)
                      ..+++|++|+++....                +.+++   ... .  +.-||.||..+.     +...-.-...+.+...
T Consensus       569 ~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP  648 (806)
T 3cf2_A          569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP  648 (806)
T ss_dssp             TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred             cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence            4789999999864311                11111   111 1  334444555432     2221123467778777


Q ss_pred             ChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          307 DQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      +.++-.++|+.+........+  -....|++.+.|.-
T Consensus       649 d~~~R~~il~~~l~~~~~~~~--~dl~~la~~t~g~S  683 (806)
T 3cf2_A          649 DEKSRVAILKANLRKSPVAKD--VDLEFLAKMTNGFS  683 (806)
T ss_dssp             --CHHHHTTTTTSSCC--CCC----------------
T ss_pred             CHHHHHHHHHHHhcCCCCCCC--CCHHHHHHhCCCCC
Confidence            777777888776643221221  12356777777754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.44  E-value=0.0023  Score=56.77  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+|+|+|++|+|||||++.+......
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~~   51 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLYQ   51 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            389999999999999999999998863

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.43  E-value=0.0019  Score=67.88  Aligned_cols=52  Identities=21%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             CCccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          147 HIPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       147 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|..+..++|.+..++.+...+..+  ..+.|+|++|+||||||+.+++....
T Consensus        35 ~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           35 VPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            44566777889999999999999888  79999999999999999999997754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.42  E-value=0.003  Score=69.86  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+++|+||+|.|||||++.+ .-.
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHH
Confidence            379999999999999999998 543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.41  E-value=0.011  Score=56.06  Aligned_cols=87  Identities=18%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh--HHHHHHHHHHhCCCC----CCCCHHHH-HHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI--INVQSELVKWLGWEL----KEKDEEER-ADRLR  246 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~----~~~~~~~~-~~~l~  246 (513)
                      ..+|+|+|++|+||||++..++......+  ..+.++... .+..  .+.+...++..+.+.    ........ ...+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~  180 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA  180 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            37999999999999999999999887542  234444433 2222  222344455554332    11122221 12232


Q ss_pred             HHHHhccCCeEEEEEecCCC
Q 044393          247 LMFSESKGRKILIILDDVWK  266 (513)
Q Consensus       247 ~~~~l~~~~~~LlVLDd~~~  266 (513)
                      .  .+.. +.-++|+|.+-.
T Consensus       181 ~--a~~~-~~dvvIiDtpg~  197 (306)
T 1vma_A          181 H--ALAR-NKDVVIIDTAGR  197 (306)
T ss_dssp             H--HHHT-TCSEEEEEECCC
T ss_pred             H--HHhc-CCCEEEEECCCc
Confidence            2  2333 445889998743

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.40  E-value=0.0025  Score=65.69  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+++|.|++|+|||||++.++......
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            799999999999999999999877653

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.40  E-value=0.0018  Score=62.49  Aligned_cols=45  Identities=18%  Similarity=0.224  Sum_probs=37.9

Q ss_pred             ccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          153 SSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..++|++..++.+...+..+  .-+.++|++|+|||+||+.+++...
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            34568888888888888776  6789999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.40  E-value=0.002  Score=57.68  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=23.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|+|+|++|+|||||++.+.....
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            37999999999999999999998765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.40  E-value=0.0015  Score=56.32  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|+|++|+|||||++.+.....
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.37  E-value=0.0031  Score=60.17  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             ccchhHHHHHHHHHHhcC----CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          155 FETTKSACNQITEALKKG----STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +++....+..+...+...    ...+|+|.|++|+|||||++.+.....
T Consensus        69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345555555555554333    234899999999999999999988765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.36  E-value=0.0016  Score=57.74  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++++|+||+|+|||||++.+.....
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            6899999999999999999988764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.35  E-value=0.002  Score=55.36  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||+++.+.....
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999988764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.35  E-value=0.002  Score=58.00  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+||+|+|||||++.+.....
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            8999999999999999999998765

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.34  E-value=0.0066  Score=65.36  Aligned_cols=25  Identities=20%  Similarity=0.163  Sum_probs=22.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+++|+|++|+|||||++.++.-.
T Consensus       607 g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          607 RRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHH
Confidence            4799999999999999999988753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.32  E-value=0.0052  Score=56.67  Aligned_cols=24  Identities=50%  Similarity=0.535  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      -+.|+|++|+|||||++.+++...
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998765

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.31  E-value=0.0056  Score=65.99  Aligned_cols=47  Identities=15%  Similarity=0.156  Sum_probs=33.7

Q ss_pred             eEEEEEecCCCcccccccc--------cCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393          256 KILIILDDVWKELDLETVG--------IPANCCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       256 ~~LlVLDd~~~~~~~~~l~--------~~~~~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                      +-|+|||++.+.+|.....        ....|..||++||+.++. .. +.+.+.|.
T Consensus       752 p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~-aDrii~L~  806 (842)
T 2vf7_A          752 GTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AA-SDWVLDIG  806 (842)
T ss_dssp             CEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TT-CSEEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-Hh-CCEEEEEC
Confidence            6899999999987643321        112388999999998887 33 56777773

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.31  E-value=0.0012  Score=55.04  Aligned_cols=46  Identities=17%  Similarity=0.151  Sum_probs=31.5

Q ss_pred             cccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          154 SFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++|+...+..+...+..  ....-|.|+|++|+|||++|+.+++...
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            355777777666666532  2225688999999999999999887643

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.29  E-value=0.0023  Score=62.18  Aligned_cols=52  Identities=17%  Similarity=0.053  Sum_probs=37.4

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++..+..++|.+.....+..........-+.|+|++|+|||+||+.+++...
T Consensus        19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            3445666788887666554444322224599999999999999999998765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.29  E-value=0.0021  Score=57.45  Aligned_cols=26  Identities=31%  Similarity=0.350  Sum_probs=23.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|+|+||+|+|||||++.+.....
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            37999999999999999999988765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.29  E-value=0.0064  Score=69.40  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+.+-..+
T Consensus      1050 ~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A         1050 QGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp             SSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred             cceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            3333334455  89999999999999999999886643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.29  E-value=0.0022  Score=55.50  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||+++.+.....
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6899999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.27  E-value=0.0039  Score=71.33  Aligned_cols=36  Identities=19%  Similarity=0.395  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  ..|+|+|++|+|||||++.+.+-..+
T Consensus      1096 ~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A         1096 KGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp             EEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred             cceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccC
Confidence            3333334455  89999999999999999999876654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.25  E-value=0.0029  Score=60.00  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=25.3

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+++|+|++|+|||||++.++......
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~  129 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL  129 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            4799999999999999999999888754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.25  E-value=0.026  Score=55.96  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=25.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|.++|++|+||||++..++..+...
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~  124 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR  124 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999888754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.23  E-value=0.0024  Score=56.02  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .+++|+|++|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5899999999999999999976

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.23  E-value=0.0025  Score=56.66  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+|+|+|++|+||||+++.+....
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            799999999999999999998876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.21  E-value=0.003  Score=58.56  Aligned_cols=116  Identities=16%  Similarity=0.120  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh-HHHHHHHHH--HhCCCCCCCC
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI-INVQSELVK--WLGWELKEKD  237 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~--~l~~~~~~~~  237 (513)
                      .++.+.  +..+  .+++|+|++|+|||||++.+.+.....  +...+++. ..+... ..-...++.  .++.  ..  
T Consensus        16 vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl--~~--   84 (261)
T 2eyu_A           16 KVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITI-EDPIEYVFKHKKSIVNQREVGE--DT--   84 (261)
T ss_dssp             HHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEE-ESSCCSCCCCSSSEEEEEEBTT--TB--
T ss_pred             HHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEc-CCcceeecCCcceeeeHHHhCC--CH--
Confidence            455554  4455  899999999999999999999877543  12222221 111000 000000000  0000  00  


Q ss_pred             HHHHHHHHHHHHHhccCCeEEEEEecCCCccccccc-ccCCCCcEEEEEeCchHH
Q 044393          238 EEERADRLRLMFSESKGRKILIILDDVWKELDLETV-GIPANCCKILLTTRLQQV  291 (513)
Q Consensus       238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l-~~~~~~~~iivTtr~~~v  291 (513)
                       ......+..  .+.. ++-+|++|++.+......+ .....|..|++|||+.+.
T Consensus        85 -~~l~~~la~--aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~  135 (261)
T 2eyu_A           85 -KSFADALRA--ALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA  135 (261)
T ss_dssp             -SCHHHHHHH--HHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSH
T ss_pred             -HHHHHHHHH--HHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchH
Confidence             112333443  3333 5668999999854433222 111237789999998654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.20  E-value=0.0027  Score=58.38  Aligned_cols=41  Identities=29%  Similarity=0.439  Sum_probs=32.9

Q ss_pred             chhHHHHHHHHHHhc---CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          157 TTKSACNQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       157 gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +....++.+...+..   +  .+|+|+|++|+||||+++.+...+.
T Consensus        30 ~~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CcchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHhcC
Confidence            344577777777766   6  7999999999999999999998765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.20  E-value=0.0023  Score=56.21  Aligned_cols=25  Identities=44%  Similarity=0.506  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.++....
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            5789999999999999999998875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.19  E-value=0.005  Score=58.02  Aligned_cols=29  Identities=21%  Similarity=0.226  Sum_probs=25.4

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +...+|+|+|++|+|||||++.+...+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            34579999999999999999999888765

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.19  E-value=0.0033  Score=63.90  Aligned_cols=44  Identities=20%  Similarity=0.170  Sum_probs=37.8

Q ss_pred             ccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          155 FETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++|++..++.+...+..+  .-|.|+|++|+|||+||+.+++....
T Consensus        24 ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~   67 (500)
T 3nbx_X           24 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN   67 (500)
T ss_dssp             CSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred             hHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh
Confidence            568888888888888777  68999999999999999999987743

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.16  E-value=0.0029  Score=54.60  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+|+|+|++|+||||+++.+....
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh
Confidence            789999999999999999998765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.15  E-value=0.0028  Score=54.56  Aligned_cols=20  Identities=35%  Similarity=0.700  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCChHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFV  194 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~  194 (513)
                      .+|+|.|++|+||||+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999999

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.13  E-value=0.0034  Score=55.22  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=23.3

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++|+|+||+|+|||||++.+.....
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            47999999999999999999987754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.13  E-value=0.032  Score=55.44  Aligned_cols=28  Identities=21%  Similarity=0.371  Sum_probs=24.9

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      +.+|.++|++|+||||++..++..+..+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~  127 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKR  127 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence            4799999999999999999999887654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.12  E-value=0.003  Score=58.03  Aligned_cols=26  Identities=19%  Similarity=0.242  Sum_probs=23.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|+|+|++|+|||||++.++..+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            37999999999999999999996653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.11  E-value=0.002  Score=60.40  Aligned_cols=31  Identities=35%  Similarity=0.423  Sum_probs=25.9

Q ss_pred             HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+..+  .+++|+|++|+|||||++.++.....
T Consensus        43 ~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           43 QIAKG--DKWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             EEETT--CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            34455  89999999999999999999887653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.09  E-value=0.0027  Score=56.37  Aligned_cols=25  Identities=16%  Similarity=0.375  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||+++.+.....
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999988763

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.08  E-value=0.032  Score=55.90  Aligned_cols=60  Identities=17%  Similarity=0.192  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .++.+..-+..+  .++.|.|.+|+|||||+.+++.....+  -..++|++..  .+...+...++
T Consensus       186 ~LD~~lgGl~~G--~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~  245 (444)
T 3bgw_A          186 ELDRMTYGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLI  245 (444)
T ss_dssp             HHHHHHSSBCSS--CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHH
T ss_pred             HHHhhcCCCCCC--cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHH
Confidence            344444334445  799999999999999999998877654  2345555433  33444444443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.08  E-value=0.0052  Score=58.99  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=28.9

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+....|.|+|++|+||||+++.++.....
T Consensus        13 ~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           13 QLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             HHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            33333444565567999999999999999999887754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.08  E-value=0.0097  Score=68.09  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++|+|+.|+|||||++.+.+...+
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~~~~  470 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRYYDV  470 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred             cEEEEEecCCCcHHHHHHHhcccccc
Confidence            89999999999999999999887654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.06  E-value=0.0035  Score=54.65  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|+|++|+||||+++.+.....
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.06  E-value=0.0036  Score=54.67  Aligned_cols=28  Identities=43%  Similarity=0.554  Sum_probs=25.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|.|.|++|+||||+++.++......
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999999988654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.03  E-value=0.0066  Score=54.74  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...+.+...+.......|+|+|.+|+|||||+..+......
T Consensus        24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            33445555555556689999999999999999999887643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.02  E-value=0.0036  Score=56.62  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|+|++|+||||+++.+...+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999988664

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.02  E-value=0.0038  Score=59.21  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+++|+|++|+||||+++.++......
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~~  127 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKNE  127 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            799999999999999999999887653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.01  E-value=0.004  Score=56.04  Aligned_cols=108  Identities=14%  Similarity=-0.013  Sum_probs=60.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKE---KDEEERADRLRLMFSE  251 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~~~l  251 (513)
                      .++.|+|+.|+||||++..+..+....+  ..+..+....+.  . ....+++.++.....   ....+....+..  ..
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~--~~   85 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMS--NS   85 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS--TT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHH--Hh
Confidence            7899999999999999999988886542  223333333221  1 222344444443222   122333444443  23


Q ss_pred             ccCCeEEEEEecCCCcc--ccccccc-CCCCcEEEEEeCch
Q 044393          252 SKGRKILIILDDVWKEL--DLETVGI-PANCCKILLTTRLQ  289 (513)
Q Consensus       252 ~~~~~~LlVLDd~~~~~--~~~~l~~-~~~~~~iivTtr~~  289 (513)
                      ..++.-+||+|++....  .++.+.. ...+..||+|.+..
T Consensus        86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~  126 (223)
T 2b8t_A           86 FNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDK  126 (223)
T ss_dssp             SCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSB
T ss_pred             hCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccc
Confidence            33345699999986431  1222211 11278899998854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.01  E-value=0.0036  Score=54.19  Aligned_cols=22  Identities=32%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .+|.|.|++|+||||+++.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999987

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.98  E-value=0.0068  Score=57.73  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=24.1

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ...+|+|+|++|+|||||++.+.....
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            347999999999999999999998765

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.98  E-value=0.004  Score=54.58  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|.|.|++|+||||+++.+...+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999998764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.97  E-value=0.032  Score=53.45  Aligned_cols=61  Identities=15%  Similarity=0.133  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .++.+..-+..+  .++.|.|.+|+|||||+..++......  -..++|++  -..+...+...++.
T Consensus        35 ~LD~~~gGl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fS--lEms~~ql~~Rlls   95 (338)
T 4a1f_A           35 QLDNYTSGFNKG--SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFS--LEMSAEQLALRALS   95 (338)
T ss_dssp             HHHHHHCSBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEE--SSSCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe--CCCCHHHHHHHHHH
Confidence            445554444455  799999999999999999998877652  23455544  44555666665544

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.96  E-value=0.028  Score=61.15  Aligned_cols=48  Identities=23%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             CeEEEEEecCCCcccccccc--------cCCCCcEEEEEeCchHHHhhcCCcceeecC
Q 044393          255 RKILIILDDVWKELDLETVG--------IPANCCKILLTTRLQQVCDRMGCDTRIKLD  304 (513)
Q Consensus       255 ~~~LlVLDd~~~~~~~~~l~--------~~~~~~~iivTtr~~~v~~~~~~~~~~~l~  304 (513)
                      .+-|+|||++.+.+|.....        ....|..||++||+.++...  ++..+.|.
T Consensus       826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~--ADrIivLg  881 (916)
T 3pih_A          826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN--ADHIIDLG  881 (916)
T ss_dssp             SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh--CCEEEEec
Confidence            45899999999987743321        11227899999999887653  55677663

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.93  E-value=0.0035  Score=55.75  Aligned_cols=25  Identities=36%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|+|++|+|||||++.+.....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCc
Confidence            7899999999999999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.93  E-value=0.0039  Score=55.34  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .+|+|+|++|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999988

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.92  E-value=0.0024  Score=58.06  Aligned_cols=24  Identities=33%  Similarity=0.328  Sum_probs=16.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHH-hHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVG-NQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~-~~~  198 (513)
                      .+++|+|++|+|||||++.+. ...
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            799999999999999999998 664

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.92  E-value=0.0035  Score=54.68  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.|+|+||+|+|||||++.+......
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~   27 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            56899999999999999999877543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.92  E-value=0.0042  Score=57.36  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||||+.++....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            4789999999999999999988764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.91  E-value=0.0045  Score=54.16  Aligned_cols=26  Identities=38%  Similarity=0.604  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|.|.|++|+||||+++.+...+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            68999999999999999999987763

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.90  E-value=0.0055  Score=56.95  Aligned_cols=48  Identities=17%  Similarity=0.106  Sum_probs=32.4

Q ss_pred             cccccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          152 FSSFETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..++|....+..+...+..  .....|.|+|++|+|||+||+.+++...
T Consensus         5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            34466777777766655432  1226788999999999999999998764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.90  E-value=0.0033  Score=54.11  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ++++|+|++|+|||||++.+.......
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            689999999999999999999988765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.89  E-value=0.0049  Score=54.02  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||+++.+...+.
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999988763

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.87  E-value=0.038  Score=55.66  Aligned_cols=60  Identities=13%  Similarity=0.267  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i  225 (513)
                      .++.+..-+..+  .++.|.|++|+|||||+..++....... -..++|++.  ..+...+...+
T Consensus       192 ~LD~~~gGl~~G--~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~--E~s~~~l~~r~  251 (454)
T 2r6a_A          192 ELDRMTSGFQRS--DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSL--EMSAQQLVMRM  251 (454)
T ss_dssp             HHHHHHSSBCTT--CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEES--SSCHHHHHHHH
T ss_pred             HHHhhcCCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEEC--CCCHHHHHHHH
Confidence            455555444555  7999999999999999999998876531 124555543  33444544444

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.87  E-value=0.004  Score=53.83  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|++|+||||+++.++....
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3689999999999999999998764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.86  E-value=0.0047  Score=54.71  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|+|.|+.|+||||+++.+...+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998775

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.85  E-value=0.0042  Score=55.23  Aligned_cols=22  Identities=45%  Similarity=0.628  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .+|+|+|++|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999977

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.85  E-value=0.0066  Score=54.53  Aligned_cols=41  Identities=29%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ....+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus        15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34445555555555568999999999999999999988764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.82  E-value=0.0051  Score=60.03  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  ..++|+|++|+|||||++.+.+....
T Consensus       166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            5566666677  79999999999999999999987754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.81  E-value=0.0075  Score=52.98  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||+++.+.....
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            7999999999999999999988764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.80  E-value=0.0051  Score=56.76  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|+|++|+||||+++.++..+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            7999999999999999999997664

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.79  E-value=0.0057  Score=53.31  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|+|.|++|+||||+++.+.....
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999987653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.77  E-value=0.026  Score=53.21  Aligned_cols=85  Identities=18%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCCCCC----CCCHHHHHH-HHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGWELK----EKDEEERAD-RLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~-~l~~~  248 (513)
                      .+++|+|++|+||||++..++......+  ..+.++....... ....+.......+.+.-    ...+..... .+.  
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~--  174 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE--  174 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH--
Confidence            7999999999999999999999887542  2344444322111 11223344444444321    123333322 222  


Q ss_pred             HHhccCCeEEEEEecC
Q 044393          249 FSESKGRKILIILDDV  264 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~  264 (513)
                       .....+.=++|+|.+
T Consensus       175 -~~~~~~~D~viiDtp  189 (295)
T 1ls1_A          175 -KARLEARDLILVDTA  189 (295)
T ss_dssp             -HHHHHTCCEEEEECC
T ss_pred             -HHHhCCCCEEEEeCC
Confidence             221124458899988

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.76  E-value=0.083  Score=52.59  Aligned_cols=28  Identities=39%  Similarity=0.539  Sum_probs=25.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|.++|.+|+||||++..++..+..+
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            5799999999999999999999888764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.76  E-value=0.0059  Score=52.30  Aligned_cols=26  Identities=35%  Similarity=0.505  Sum_probs=23.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++|+|.|+.|+||||+++.+...+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.76  E-value=0.0055  Score=59.37  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=24.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+++|+|++|+||||+++.++......
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~~~  184 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLKNE  184 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhcccc
Confidence            799999999999999999999887653

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=95.75  E-value=0.078  Score=52.78  Aligned_cols=94  Identities=18%  Similarity=0.209  Sum_probs=58.5

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCCC-------------CCCCCH
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGWE-------------LKEKDE  238 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------------~~~~~~  238 (513)
                      ..+.++|.|.+|+|||+|+..+.+..... +-+..+++-+.+... ..++.+++...-...             ....+.
T Consensus       152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~  230 (482)
T 2ck3_D          152 KGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP  230 (482)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred             cCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence            34899999999999999999998876432 235566777776543 445666666542221             011121


Q ss_pred             H------HHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          239 E------ERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       239 ~------~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      .      ...-.+.+++.-..|+.+||++||+...
T Consensus       231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~  265 (482)
T 2ck3_D          231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF  265 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence            1      1223344444443469999999998543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.74  E-value=0.012  Score=54.97  Aligned_cols=24  Identities=50%  Similarity=0.535  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      -+.|+|++|+|||||++.+++...
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCcChHHHHHHHHHHHcC
Confidence            389999999999999999998775

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.74  E-value=0.0048  Score=53.52  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|+|++|+||||+++.+.....
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            6789999999999999999987764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.73  E-value=0.0081  Score=59.37  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.+.+...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3999999999999999999998543

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.72  E-value=0.019  Score=52.19  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=24.5

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      +.+...+..+  +.+.|.|+.|+||||++..+.-.
T Consensus        67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhc
Confidence            4445555566  79999999999999877665443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.69  E-value=0.0064  Score=58.69  Aligned_cols=40  Identities=25%  Similarity=0.409  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..++.+...+..  ..+++|+|++|+|||||++.+.......
T Consensus        43 ~~l~~i~~~~~~--g~~v~i~G~~GaGKSTLl~~l~g~~~~~   82 (337)
T 2qm8_A           43 DLIDAVLPQTGR--AIRVGITGVPGVGKSTTIDALGSLLTAA   82 (337)
T ss_dssp             HHHHHHGGGCCC--SEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCcccCC--CeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence            344444433333  4899999999999999999999877653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.68  E-value=0.007  Score=52.77  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ...|+|+|++|+||||+++.+...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            378999999999999999999887

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.68  E-value=0.0074  Score=58.35  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...++.+ ..+..+  .+++|+|++|+|||||++.+++....
T Consensus        59 ~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           59 VRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3456665 445566  89999999999999999999998764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.68  E-value=0.0062  Score=54.22  Aligned_cols=24  Identities=42%  Similarity=0.643  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+|+|+|++|+||||+++.+....
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            789999999999999999998764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.67  E-value=0.0064  Score=53.30  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||+++.+.....
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999987653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.63  E-value=0.01  Score=58.00  Aligned_cols=45  Identities=24%  Similarity=0.184  Sum_probs=34.1

Q ss_pred             ccchhHHHHHHHHHHh-------------cC--CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          155 FETTKSACNQITEALK-------------KG--STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~-------------~~--~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.+..++.+...+.             ..  ....+.++|++|+|||++|+.+++...
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3577777777776662             10  235789999999999999999998874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.63  E-value=0.0067  Score=53.43  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||+++.+...+.
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            7899999999999999999988764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.63  E-value=0.0062  Score=56.72  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++|+|++|+|||||++.+++....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5899999999999999999987643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.62  E-value=0.011  Score=50.64  Aligned_cols=28  Identities=25%  Similarity=0.152  Sum_probs=24.9

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+++|+|+.|+|||||+..+...+..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            4789999999999999999999987654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.61  E-value=0.0053  Score=53.47  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|+|++|+||||+++.+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4699999999999999999988764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.60  E-value=0.0074  Score=53.74  Aligned_cols=27  Identities=19%  Similarity=0.506  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+|+|.|++|+||||+++.+...+...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            689999999999999999999887643

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.58  E-value=0.013  Score=55.22  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+|.|.|++|+||||+++.+....
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.58  E-value=0.11  Score=52.68  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=24.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|+|+|.+|+||||++..++..+...
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~  128 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK  128 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            4689999999999999999999877653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.58  E-value=0.0078  Score=53.30  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|+|.|+.|+||||+++.+.....
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999987653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.57  E-value=0.071  Score=50.24  Aligned_cols=88  Identities=24%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC-CChHHHHHHHHHHhCCCC----CCCCHHHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD-PDIINVQSELVKWLGWEL----KEKDEEERADRLRLM  248 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~  248 (513)
                      ..+++++|++|+||||++..++......+  ..+.++..... ......+.......+.+.    ...+.......... 
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~-  174 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE-  174 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH-
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH-
Confidence            37999999999999999999998887542  23444444322 223333444455554432    11233333222222 


Q ss_pred             HHhccCCeEEEEEecCC
Q 044393          249 FSESKGRKILIILDDVW  265 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~  265 (513)
                       .+.....-++|+|-+-
T Consensus       175 -~~~~~~~D~ViIDTpg  190 (297)
T 1j8m_F          175 -KFLSEKMEIIIVDTAG  190 (297)
T ss_dssp             -HHHHTTCSEEEEECCC
T ss_pred             -HHHhCCCCEEEEeCCC
Confidence             2221233488889763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.56  E-value=0.0077  Score=53.96  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++|.|.|++|+||||.|+.++..+.
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            48999999999999999999998764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.55  E-value=0.0057  Score=60.46  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCccE--EEEEcCCCChHHHHHHHHHhH
Q 044393          162 CNQITEALKKGSTKM--VGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       162 ~~~l~~~l~~~~~~v--i~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ++.+...+..|  .+  ++|+|++|+|||||++.+++.
T Consensus        30 L~~vsl~i~~G--ei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQG--FCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-C--CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCC--CeeEEEEECCCCCCHHHHHHHHhCc
Confidence            77777777777  56  999999999999999999875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.53  E-value=0.0064  Score=52.22  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||+++.+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.51  E-value=0.008  Score=53.10  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..+|+|+|+.|+||||+++.+...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            478999999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.51  E-value=0.0088  Score=60.09  Aligned_cols=28  Identities=32%  Similarity=0.443  Sum_probs=25.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+++|+|++|+|||||++.+++.+...
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~  320 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQ  320 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence            4799999999999999999999988754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.50  E-value=0.048  Score=54.74  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=40.1

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      ++.+..-+..+  .++.|.|++|+|||||+..++....... -..++|++.  ..+...+...++.
T Consensus       190 LD~~lgGl~~G--~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~sl--E~~~~~l~~R~~~  250 (444)
T 2q6t_A          190 LDQLIGTLGPG--SLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSL--EMPAAQLTLRMMC  250 (444)
T ss_dssp             HHHHHCCCCTT--CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEES--SSCHHHHHHHHHH
T ss_pred             hhhhcCCcCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEC--CCCHHHHHHHHHH
Confidence            44444334444  7999999999999999999988775431 123555544  4455566666554

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.49  E-value=0.0093  Score=58.23  Aligned_cols=24  Identities=29%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+++|+|++|+|||||++.+++..
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            799999999999999999999764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.47  E-value=0.0088  Score=53.28  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=26.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCe
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDE  206 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~  206 (513)
                      .+|+|.|+.|+||||+++.+...+... +++.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~   41 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV   41 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence            789999999999999999999887643 3444

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.47  E-value=0.0084  Score=52.42  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||+++.+.....
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999988754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.46  E-value=0.0061  Score=52.90  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||+++.+...+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6899999999999999999987764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.45  E-value=0.0096  Score=52.65  Aligned_cols=26  Identities=35%  Similarity=0.281  Sum_probs=23.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|.|.|++|+||||+++.+.....
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.44  E-value=0.0088  Score=51.06  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|.|.|++|+||||+++.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999988764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.43  E-value=0.017  Score=52.88  Aligned_cols=27  Identities=19%  Similarity=0.059  Sum_probs=23.6

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ...+|+|.|++|+||||+++.+...+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            347899999999999999999987763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.42  E-value=0.0087  Score=53.58  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|+|.|++|+||||+++.+.....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999987763

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.42  E-value=0.0088  Score=52.38  Aligned_cols=25  Identities=40%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +|+|.|+.|+||||+++.+...+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~   26 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ   26 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999988753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.40  E-value=0.013  Score=54.10  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=23.3

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|.|+|++|+||||+++.+.....
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999988764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.40  E-value=0.0098  Score=51.50  Aligned_cols=26  Identities=38%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|+|+|++|+||||+++.+...+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            78999999999999999999987754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.39  E-value=0.0097  Score=53.10  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=24.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+|+|.|+.|+||||+++.+...+...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            789999999999999999999887643

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.38  E-value=0.0096  Score=53.52  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|++|+||||+++.++..+.
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.38  E-value=0.005  Score=55.02  Aligned_cols=25  Identities=28%  Similarity=0.638  Sum_probs=22.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +|+|.|+.|+||||+++.+...+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999988754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.37  E-value=0.0087  Score=52.45  Aligned_cols=25  Identities=32%  Similarity=0.211  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      -.|+|+|++|+|||||++.+.+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            5799999999999999999987653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.37  E-value=0.0097  Score=54.82  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=23.7

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ...+|+|.|+.|+||||+++.+...+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            346899999999999999999988654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.35  E-value=0.017  Score=49.71  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++++|+|++|+|||||+..+......
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            478999999999999999999988654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.34  E-value=0.013  Score=58.61  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ...++.+ ..+..+  .+++|+|++|+|||||++.+++....
T Consensus       145 ~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          145 VRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             CHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             ceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            3466666 445556  89999999999999999999998754

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=95.31  E-value=0.053  Score=54.23  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=59.5

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCCC-------C-------CCC
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGWE-------L-------KEK  236 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~-------~~~  236 (513)
                      +..+.++|.|.+|+|||+|+..+.+..... +-+..+++-+.+... ..++..++...-...       .       ...
T Consensus       163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~  241 (498)
T 1fx0_B          163 RRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE  241 (498)
T ss_dssp             CTTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred             ccCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence            334899999999999999999998876432 245667777776654 445666665432111       0       111


Q ss_pred             CH------HHHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          237 DE------EERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       237 ~~------~~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      +.      ....-.+.+++.-..|+.+||++||+...
T Consensus       242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~  278 (498)
T 1fx0_B          242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF  278 (498)
T ss_dssp             CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence            11      12233344444442469999999998543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.30  E-value=0.0096  Score=53.33  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|+|.|++|+||||+++.+.....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999987653

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.26  E-value=0.029  Score=65.64  Aligned_cols=82  Identities=22%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~  248 (513)
                      +.|.|+||+|+|||+||.++.......  -..++|+.+...++...     ++.++.+..      ..+.+.....+.. 
T Consensus      1428 ~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~- 1499 (2050)
T 3cmu_A         1428 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA- 1499 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH-
Confidence            899999999999999999998765543  23466777666665554     455553221      1223344444443 


Q ss_pred             HHhccCCeEEEEEecCC
Q 044393          249 FSESKGRKILIILDDVW  265 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~  265 (513)
                       .....+..+||+|++.
T Consensus      1500 -lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1500 -LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             -HHHHTCCSEEEESCGG
T ss_pred             -HHhcCCCCEEEEcChh
Confidence             2233477899999984

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.24  E-value=0.01  Score=53.69  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|++|+||||+++.+.....
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999988653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.24  E-value=0.01  Score=52.47  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|+|.|+.|+||||+++.+...+
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.23  E-value=0.015  Score=51.91  Aligned_cols=25  Identities=40%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||+++.+...+.
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            8999999999999999999998876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.01  Score=59.71  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +...+..+  .+++|+|++|+|||||++.+++....
T Consensus       131 vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p  164 (460)
T 2npi_A          131 IRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALK  164 (460)
T ss_dssp             HHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred             CceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccc
Confidence            33344455  89999999999999999999987643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.20  E-value=0.011  Score=51.82  Aligned_cols=25  Identities=28%  Similarity=0.561  Sum_probs=22.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+|+|+|+.|+||||+++.+....
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.18  E-value=0.12  Score=51.09  Aligned_cols=28  Identities=32%  Similarity=0.305  Sum_probs=25.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+++++|++|+||||++..++......
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3789999999999999999999888754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.18  E-value=0.012  Score=53.37  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||+++.+...+.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999988764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.18  E-value=0.012  Score=54.59  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=23.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|.|.|++|+||||+++.+...+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~   30 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSK   30 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            68999999999999999999987643

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=95.17  E-value=0.03  Score=55.44  Aligned_cols=94  Identities=16%  Similarity=0.092  Sum_probs=54.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcC-CCC-eEEEEEEcCCC-ChHHHHHHHHHHhCC-------CCCCCCHHH---
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IFD-EVGIATVSQDP-DIINVQSELVKWLGW-------ELKEKDEEE---  240 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~---  240 (513)
                      .+.++|.|.+|+|||+|+.++++...... +-+ ..+++-+.+.. ...++..++...-..       .....+...   
T Consensus       151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~  230 (465)
T 3vr4_D          151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA  230 (465)
T ss_dssp             TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred             CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence            37899999999999999999988765421 111 34555566543 344555655443111       111222211   


Q ss_pred             ---HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          241 ---RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       241 ---~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                         ....+.+++.-..|+.+||++||+...
T Consensus       231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr~  260 (465)
T 3vr4_D          231 TPRMALTAAEYLAYEKGMHVLVIMTDMTNY  260 (465)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence               123344433433469999999998643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.16  E-value=0.01  Score=53.43  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|++|+||||+++.++..+.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6799999999999999999998765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.16  E-value=0.011  Score=52.08  Aligned_cols=24  Identities=33%  Similarity=0.264  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|++|+|||||++.+.+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            478999999999999999998764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.15  E-value=0.021  Score=50.12  Aligned_cols=40  Identities=13%  Similarity=0.101  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcC-CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          161 ACNQITEALKKG-STKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       161 ~~~~l~~~l~~~-~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      -+..+..++..- ....+.|+||+|+||||+|..+++....
T Consensus        44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345555555432 1247999999999999999999988753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.13  E-value=0.012  Score=52.21  Aligned_cols=24  Identities=29%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +|.|.|++|+||||.|+.++..+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            688999999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.09  E-value=0.017  Score=58.82  Aligned_cols=39  Identities=15%  Similarity=-0.001  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..++.+...+..+  ..++|+|++|+|||||++.+.+....
T Consensus       248 ~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          248 GVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             HHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            3455666666666  67999999999999999999887754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.08  E-value=0.012  Score=51.14  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+.+|+|++|+|||||+..++.-+.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            4899999999999999999987654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.03  E-value=0.012  Score=57.39  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..++|+|++|+|||||++.+++.....
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            789999999999999999999887643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.97  E-value=0.015  Score=51.60  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++|+|.|+.|+||||+++.+...+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4899999999999999999988764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.96  E-value=0.023  Score=55.66  Aligned_cols=25  Identities=32%  Similarity=0.411  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+.++|++|+|||++|+.+++...
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            5689999999999999999998773

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.94  E-value=0.0096  Score=54.00  Aligned_cols=24  Identities=29%  Similarity=0.221  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..+|+|.|++|+|||||++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            379999999999999999999876

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.92  E-value=0.015  Score=56.20  Aligned_cols=50  Identities=16%  Similarity=0.126  Sum_probs=33.4

Q ss_pred             HHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCC
Q 044393          165 ITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQD  215 (513)
Q Consensus       165 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~  215 (513)
                      .++.+.. +..+.++|+|++|+|||+|+..+++..... ..+.+ +++-+.+.
T Consensus       165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER  216 (427)
T 3l0o_A          165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER  216 (427)
T ss_dssp             HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred             hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence            3444433 444899999999999999999998876542 12333 34555543

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.89  E-value=0.016  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|.|++|+||||+++.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998876

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=94.89  E-value=0.18  Score=54.30  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=24.9

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      +.+...+..+  ..+.|+|+.|+||||++..+...
T Consensus       100 ~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          100 DEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHH
Confidence            4455555566  78999999999999977766544

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.87  E-value=0.015  Score=52.33  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|.|.|++|+||||+++.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988763

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.87  E-value=0.015  Score=52.21  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .+|+|.|+.|+||||+++.+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999976

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.86  E-value=0.048  Score=62.97  Aligned_cols=84  Identities=21%  Similarity=0.236  Sum_probs=54.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCC------CCCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWEL------KEKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~  248 (513)
                      .++.|.|++|+||||||.+++......  -..++|++........  .   ++.++...      ...+..+....++.+
T Consensus       733 ~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~l  805 (1706)
T 3cmw_A          733 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDAL  805 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence            799999999999999999998877643  2246666655554432  1   55555431      223445555555542


Q ss_pred             HHhccCCeEEEEEecCCCc
Q 044393          249 FSESKGRKILIILDDVWKE  267 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~~  267 (513)
                        ....+.-+||+|.+...
T Consensus       806 --v~~~~~~lVVIDsLq~l  822 (1706)
T 3cmw_A          806 --ARSGAVDVIVVDSVAAL  822 (1706)
T ss_dssp             --HHHTCCSEEEESCSTTC
T ss_pred             --HHccCCCEEEEechhhh
Confidence              22235669999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.82  E-value=0.014  Score=49.56  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..|+|+|++|+|||||++.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.78  E-value=0.017  Score=51.79  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|++|+||||+++.+...+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.78  E-value=0.029  Score=50.72  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..|+|.|++|+||||+++.+...+..
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            79999999999999999999998875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.76  E-value=0.019  Score=56.19  Aligned_cols=104  Identities=18%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHH---HHH--HhCCCCCCCCHHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSE---LVK--WLGWELKEKDEEERADRLRLMF  249 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---i~~--~l~~~~~~~~~~~~~~~l~~~~  249 (513)
                      .+++|+|++|+|||||++.+.+.....  ....+.. ...+...  ....   ++.  .++.     ........+..  
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~-~e~~~e~--~~~~~~~~v~Q~~~g~-----~~~~~~~~l~~--  204 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQT--KSYHIIT-IEDPIEY--VFKHKKSIVNQREVGE-----DTKSFADALRA--  204 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEE-EESSCCS--CCCCSSSEEEEEEBTT-----TBSCSHHHHHH--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEE-ecccHhh--hhccCceEEEeeecCC-----CHHHHHHHHHH--
Confidence            799999999999999999999877643  1122211 1111110  0000   000  0000     00111234444  


Q ss_pred             HhccCCeEEEEEecCCCcccccc-cccCCCCcEEEEEeCchHH
Q 044393          250 SESKGRKILIILDDVWKELDLET-VGIPANCCKILLTTRLQQV  291 (513)
Q Consensus       250 ~l~~~~~~LlVLDd~~~~~~~~~-l~~~~~~~~iivTtr~~~v  291 (513)
                      .+.. .+-+|++|++.+...+.. +.....|..|+.|+|..+.
T Consensus       205 ~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~  246 (372)
T 2ewv_A          205 ALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA  246 (372)
T ss_dssp             HTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSH
T ss_pred             Hhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchH
Confidence            4444 566899999986554433 2222237778899997553

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.76  E-value=0.017  Score=55.31  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|++|+||||||..++..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999998764

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=94.76  E-value=0.035  Score=54.96  Aligned_cols=95  Identities=14%  Similarity=0.090  Sum_probs=54.4

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhc--------CCCC-eEEEEEEcCCC-ChHHHHHHHHHHhCC-------CCCC
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQE--------KIFD-EVGIATVSQDP-DIINVQSELVKWLGW-------ELKE  235 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~  235 (513)
                      ..+.++|.|.+|+|||+|+.++++.....        .+-+ ..+++-+.+.. ...++..++...-..       ....
T Consensus       146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d  225 (464)
T 3gqb_B          146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD  225 (464)
T ss_dssp             TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred             cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence            34889999999999999999998876541        1112 34555566544 344455554332100       0111


Q ss_pred             CC-HHH-----HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          236 KD-EEE-----RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       236 ~~-~~~-----~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      .+ ...     ..-.+.+++.-..|+.+||++||+...
T Consensus       226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~  263 (464)
T 3gqb_B          226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY  263 (464)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence            11 111     223344433433469999999998643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.71  E-value=0.021  Score=54.44  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=24.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+|+|+|++|+||||++..++......
T Consensus       106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~  132 (320)
T 1zu4_A          106 NIFMLVGVNGTGKTTSLAKMANYYAEL  132 (320)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            799999999999999999999888754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.68  E-value=0.014  Score=55.71  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .++++|+|++|+|||||++.+....
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            5799999999999999999998764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.62  E-value=0.019  Score=54.06  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.||.|+|||||+..++....
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            6899999999999999999987653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.60  E-value=0.018  Score=54.62  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|+|+.|+|||||++.++....
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5899999999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.60  E-value=0.027  Score=54.44  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.+.....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            6899999999999999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.58  E-value=0.015  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+|+|.+|+|||||++.+.+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.58  E-value=0.03  Score=55.48  Aligned_cols=27  Identities=22%  Similarity=0.202  Sum_probs=24.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..+++|+|++|+|||||++.+.+....
T Consensus       167 ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            379999999999999999999987754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.57  E-value=0.057  Score=48.96  Aligned_cols=30  Identities=37%  Similarity=0.545  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFD  205 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~  205 (513)
                      ..|+|.|+.|+||||+++.+...+... .+.
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~   57 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQN-GID   57 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHHT-TCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc-CCC
Confidence            799999999999999999999988764 355

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.56  E-value=0.02  Score=53.63  Aligned_cols=23  Identities=35%  Similarity=0.660  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      ..+|+|.|+.|+||||+++.+..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999983

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.56  E-value=0.013  Score=55.24  Aligned_cols=26  Identities=19%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|+|.|+.|+||||+++.+...+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            36899999999999999999988665

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.54  E-value=0.021  Score=51.82  Aligned_cols=25  Identities=28%  Similarity=0.223  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|+.|+||||+++.+...+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998864

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.52  E-value=0.065  Score=54.05  Aligned_cols=44  Identities=34%  Similarity=0.477  Sum_probs=35.0

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      +....+..+...+..++ ..+.|.|++|+||||++..+...+...
T Consensus        29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            34556677777776654 499999999999999999999888665

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.52  E-value=0.03  Score=53.07  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=25.5

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.|...+. +  .+++|+|++|+|||||++.+. ...
T Consensus       157 ~~L~~~l~-G--~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          157 DELVDYLE-G--FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HHHHHHTT-T--CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             HHHHhhcc-C--cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            34444433 4  799999999999999999998 544

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.50  E-value=0.05  Score=51.73  Aligned_cols=41  Identities=20%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ  214 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~  214 (513)
                      ++.++|+|.|-||+||||.+..++.-+...+  ..+.-+.+..
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp   86 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP   86 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence            3458999999999999999999988877642  2355566553

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.48  E-value=0.019  Score=54.69  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|+||.|+|||||+..++..+.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            6899999999999999999998764

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=94.48  E-value=0.035  Score=55.23  Aligned_cols=94  Identities=16%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhcCC--CCeEEEEEEcCCC-ChHHHHHHHHHHhCCC-------CCCCCHH---
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKI--FDEVGIATVSQDP-DIINVQSELVKWLGWE-------LKEKDEE---  239 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---  239 (513)
                      ..+.++|.|.+|+|||+|+.++++.......  -+..+++-+.+.. ...++..++...-...       ....+..   
T Consensus       151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~  230 (469)
T 2c61_A          151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI  230 (469)
T ss_dssp             TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence            3488999999999999999999988764221  1244555566544 3455666665431111       1112221   


Q ss_pred             ---HHHHHHHHHHHhccCCeEEEEEecCCC
Q 044393          240 ---ERADRLRLMFSESKGRKILIILDDVWK  266 (513)
Q Consensus       240 ---~~~~~l~~~~~l~~~~~~LlVLDd~~~  266 (513)
                         .....+.+++.-..|+.+||++||+..
T Consensus       231 ~~~~~a~tiAEyfrdd~G~dVLl~~DsltR  260 (469)
T 2c61_A          231 VTPRMALTAAEYLAYEHGMHVLVILTDITN  260 (469)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence               122334443332246999999999844

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.45  E-value=0.11  Score=52.90  Aligned_cols=50  Identities=14%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .++.|.|++|+|||||+.+++.....+. -..++|++.  ..+...+...++.
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~--E~s~~~l~~r~~~  292 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAML--EESVEETAEDLIG  292 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEES--SSCHHHHHHHHHH
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEec--cCCHHHHHHHHHH
Confidence            7999999999999999999988765431 123555544  4455566665543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.44  E-value=0.063  Score=52.10  Aligned_cols=39  Identities=33%  Similarity=0.527  Sum_probs=29.1

Q ss_pred             HHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          163 NQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       163 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+...+.  .+...+|+|+|.+|+|||||+..+.......
T Consensus        66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~  106 (355)
T 3p32_A           66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER  106 (355)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            34444443  3456799999999999999999998876543

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=94.44  E-value=0.1  Score=52.27  Aligned_cols=91  Identities=22%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             CCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCCe-EEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCCHHH-
Q 044393          172 GSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFDE-VGIATVSQDPD-IINVQSELVKWLGWE-------LKEKDEEE-  240 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~-  240 (513)
                      +..+.++|.|.+|+|||+|| ..+.+...    -+. .+++-+.+... ..++.+++...-...       ....+... 
T Consensus       160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r  235 (502)
T 2qe7_A          160 GRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL  235 (502)
T ss_dssp             BTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred             ccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence            33489999999999999995 57777652    342 35666666543 445555555422111       11122211 


Q ss_pred             -----HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          241 -----RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       241 -----~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                           ....+.+++.- .|+..||++||+...
T Consensus       236 ~~a~~~a~tiAEyfrd-~G~dVLl~~Dsltr~  266 (502)
T 2qe7_A          236 YLAPYAGCAMGEYFMY-KGKHALVVYDDLSKQ  266 (502)
T ss_dssp             HHHHHHHHHHHHHHHT-TTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHHH-cCCcEEEEEecHHHH
Confidence                 12234444444 469999999998543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.44  E-value=0.022  Score=53.54  Aligned_cols=26  Identities=35%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|+|.||.|+|||||+..++....
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC
Confidence            36899999999999999999988754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.40  E-value=0.025  Score=51.38  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=23.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+|+|+|++|+||||+++.+...+.
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999988654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.40  E-value=0.037  Score=56.90  Aligned_cols=27  Identities=37%  Similarity=0.492  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+|+|+|++|+|||||++.++......
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~~  396 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLMEM  396 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhccc
Confidence            799999999999999999999988653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.39  E-value=0.023  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+.+|+|++|+|||||+..++--+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            688999999999999999887644

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=94.39  E-value=0.15  Score=51.23  Aligned_cols=95  Identities=19%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             CCccEEEEEcCCCChHHHH-HHHHHhHhhh----cCCCC-eEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCC
Q 044393          172 GSTKMVGLHGLGGVGKTTL-AKFVGNQLRQ----EKIFD-EVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKD  237 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtL-a~~~~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~  237 (513)
                      +..+.++|.|.+|+|||+| +..+.+....    ..+-+ ..+++-+.+... ..++.+++...-...       ....+
T Consensus       160 grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p  239 (510)
T 2ck3_A          160 GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA  239 (510)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred             ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence            3448999999999999999 4566666652    11233 355666776543 445555554421111       11122


Q ss_pred             HHH------HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          238 EEE------RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       238 ~~~------~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ...      ....+.+++.- .|+..||++||+...
T Consensus       240 ~~~r~~a~~~a~tiAEyfrd-~G~dVLli~Dsltr~  274 (510)
T 2ck3_A          240 APLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLSKQ  274 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcCHHHH
Confidence            111      12233444444 469999999998543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.38  E-value=0.022  Score=49.40  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..|+|+|++|+|||||+..+.+.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999874

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.36  E-value=0.073  Score=47.43  Aligned_cols=27  Identities=41%  Similarity=0.516  Sum_probs=24.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..|+|.|+.|+||||+++.+...+...
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~   30 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQL   30 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            689999999999999999999988765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.36  E-value=0.055  Score=48.54  Aligned_cols=29  Identities=24%  Similarity=0.505  Sum_probs=25.8

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .....|+|.|+.|+||||+++.+.+.+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34579999999999999999999998876

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.35  E-value=0.032  Score=53.87  Aligned_cols=30  Identities=37%  Similarity=0.552  Sum_probs=25.4

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ++..+|+|+|++|+|||||+..+.......
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~   83 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   83 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            345899999999999999999998876543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.30  E-value=0.023  Score=57.14  Aligned_cols=26  Identities=27%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-...
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            79999999999999999999987765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=94.26  E-value=0.053  Score=52.49  Aligned_cols=28  Identities=36%  Similarity=0.625  Sum_probs=24.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|+|+|++|+|||||...+.......
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~  101 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTER  101 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence            5799999999999999999999876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.26  E-value=0.027  Score=47.29  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|+|+|.+|+|||||+..+.+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999998653

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.24  E-value=0.032  Score=55.50  Aligned_cols=46  Identities=24%  Similarity=0.270  Sum_probs=33.2

Q ss_pred             ccchhHHHHHHHHHHhc--------------CCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          155 FETTKSACNQITEALKK--------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|.+...+.|...+..              ...+-|.++|++|+||||+|+.++.....
T Consensus        17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            35666666666555421              12356899999999999999999998754

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=94.21  E-value=0.095  Score=52.53  Aligned_cols=91  Identities=20%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             CCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCCe-EEEEEEcCCCC-hHHHHHHHHHHhCC-------CCCCCCHHH-
Q 044393          172 GSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFDE-VGIATVSQDPD-IINVQSELVKWLGW-------ELKEKDEEE-  240 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~-  240 (513)
                      +..+.++|.|.+|+|||+|| ..+.+...    .+. .+++-+.+... ..++.+++...-..       .....+... 
T Consensus       173 grGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r  248 (515)
T 2r9v_A          173 GRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ  248 (515)
T ss_dssp             ETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred             ccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence            33489999999999999995 57777653    342 35666666543 44455555432111       111122111 


Q ss_pred             -----HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          241 -----RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       241 -----~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                           ....+.+++.- .|+..||++||+...
T Consensus       249 ~~a~~~a~tiAEyfrd-~G~dVLli~DslTr~  279 (515)
T 2r9v_A          249 YIAPYAGCAMGEYFAY-SGRDALVVYDDLSKH  279 (515)
T ss_dssp             HHHHHHHHHHHHHHHT-TTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHHHHHHHH-cCCcEEEEeccHHHH
Confidence                 12233444444 469999999998543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.21  E-value=0.026  Score=49.85  Aligned_cols=38  Identities=21%  Similarity=0.184  Sum_probs=21.8

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+.+.........-.|+|+|.+|+|||||+..+.+..
T Consensus        17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~   54 (204)
T 4gzl_A           17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
T ss_dssp             -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence            33444444434444689999999999999999888643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.15  E-value=0.032  Score=52.78  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=23.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+......
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccc
Confidence            69999999999999999999876654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.15  E-value=0.1  Score=61.10  Aligned_cols=83  Identities=22%  Similarity=0.257  Sum_probs=54.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCC------CCCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWEL------KEKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~  248 (513)
                      .++.|.|++|+||||||.+++......  -..++|++.....+..     .++.++...      ...+.++....+..+
T Consensus       384 ~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~l  456 (2050)
T 3cmu_A          384 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL  456 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence            899999999999999999998877643  2356777666665543     155565532      123445555555542


Q ss_pred             HHhccCCeEEEEEecCCC
Q 044393          249 FSESKGRKILIILDDVWK  266 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~  266 (513)
                        ....+.-+||+|.+..
T Consensus       457 --v~~~~~~lIVIDSL~a  472 (2050)
T 3cmu_A          457 --ARSGAVDVIVVDSVAA  472 (2050)
T ss_dssp             --HHHTCCSEEEESCGGG
T ss_pred             --HHhcCCcEEEECCHHH
Confidence              2233566999998754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.14  E-value=0.084  Score=47.05  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..|+|.|+.|+||||+++.+...+...
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~   33 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRER   33 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            789999999999999999999988754

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=94.10  E-value=0.3  Score=48.83  Aligned_cols=91  Identities=24%  Similarity=0.238  Sum_probs=53.1

Q ss_pred             CCccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCC-eEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCCHH--
Q 044393          172 GSTKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFD-EVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKDEE--  239 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~--  239 (513)
                      +..+.++|.|..|+|||+|+ ..+.+...    -+ ..+++-+.+... ..++..++...-...       ....+..  
T Consensus       160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~~----~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r  235 (513)
T 3oaa_A          160 GRGQRELIIGDRQTGKTALAIDAIINQRD----SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ  235 (513)
T ss_dssp             BTTCBCEEEESSSSSHHHHHHHHHHTTSS----SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred             ccCCEEEeecCCCCCcchHHHHHHHhhcc----CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence            34489999999999999996 56666422    23 345677776543 445555544431111       1112221  


Q ss_pred             ----HHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          240 ----ERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       240 ----~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                          .....+.+++.- .|+..||++||+...
T Consensus       236 ~~a~~~a~tiAEyfrd-~G~dVLli~Dsltr~  266 (513)
T 3oaa_A          236 YLAPYAGCAMGEYFRD-RGEDALIIYDDLSKQ  266 (513)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHHHHHHHh-cCCCEEEEecChHHH
Confidence                112233444443 469999999998653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.10  E-value=0.028  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|+|+|.+|+|||||+..+.+..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.04  E-value=0.026  Score=49.29  Aligned_cols=25  Identities=28%  Similarity=0.163  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|++|+||||||..+.....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC
Confidence            6799999999999999999987653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.00  E-value=0.029  Score=53.06  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .+|.|.|++|+||||+++.+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.92  E-value=0.028  Score=55.87  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...+|.|+|++|+||||+|+.+....
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            45799999999999999999998765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.88  E-value=0.014  Score=51.77  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...|+|+|++|+|||||++.+.+..
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3789999999999999999887654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.82  E-value=0.036  Score=46.56  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||+..+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.81  E-value=0.024  Score=53.72  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+|+|++|+|||||++.++..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4699999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.77  E-value=0.037  Score=46.71  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.74  E-value=0.068  Score=46.25  Aligned_cols=33  Identities=27%  Similarity=0.238  Sum_probs=25.0

Q ss_pred             HHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          164 QITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       164 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .+.. +.....-.|+|+|.+|+|||||+..+.+.
T Consensus         7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A            7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            3444 33344478999999999999999999854

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=93.69  E-value=0.22  Score=50.41  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=53.7

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh-HHHHHHHHH----HhCC----------CCCCCC
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI-INVQSELVK----WLGW----------ELKEKD  237 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~----~l~~----------~~~~~~  237 (513)
                      ..+.++|.|+.|+|||+|+..+++...    -+..+++-+.+..+. .+++.++-+    ..+.          .....+
T Consensus       226 kGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p  301 (588)
T 3mfy_A          226 KGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMP  301 (588)
T ss_dssp             TTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSC
T ss_pred             cCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCC
Confidence            348999999999999999999877532    346677777766543 344444321    0110          011122


Q ss_pred             HHH------HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          238 EEE------RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       238 ~~~------~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ...      ..-.+.+++.- .|+.+||++|++...
T Consensus       302 ~~~r~~~~~~a~tiAEyfrd-~G~dVLl~~DsltR~  336 (588)
T 3mfy_A          302 VAAREASIYTGITIAEYFRD-MGYDVALMADSTSRW  336 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCEEEeecchHHH
Confidence            211      12223343333 469999999999654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.68  E-value=0.038  Score=48.11  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...|+|+|.+|+|||||+..+.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3689999999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.65  E-value=0.04  Score=50.19  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|+|.|+.|+||||+++.+...+.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999998874

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.62  E-value=0.11  Score=46.46  Aligned_cols=38  Identities=24%  Similarity=0.105  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ  214 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~  214 (513)
                      -.|.+.|+||+||||++..++.....++ ++ +.++.+..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~   44 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET   44 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence            3588999999999999999988876552 33 44455544

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.60  E-value=0.039  Score=53.92  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.||.|+|||||+..++....
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            6899999999999999999998764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.59  E-value=0.059  Score=49.59  Aligned_cols=26  Identities=38%  Similarity=0.491  Sum_probs=23.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..++.+.|.+|+|||||+..++....
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            37889999999999999999998776

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.58  E-value=0.2  Score=57.86  Aligned_cols=84  Identities=21%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~  248 (513)
                      +++.|.|++|+||||||.+++......  -..++|++.....+..     .++.++....      ..+.++....+..+
T Consensus       384 ~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~l  456 (1706)
T 3cmw_A          384 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL  456 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence            799999999999999999998776543  2357777766666543     2555654322      22344555555442


Q ss_pred             HHhccCCeEEEEEecCCCc
Q 044393          249 FSESKGRKILIILDDVWKE  267 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~~  267 (513)
                        ....+.-++|+|-+...
T Consensus       457 --v~~~~~~lVVIDSL~al  473 (1706)
T 3cmw_A          457 --ARSGAVDVIVVDSVAAL  473 (1706)
T ss_dssp             --HHHTCCSEEEESCSTTC
T ss_pred             --HHhcCCCEEEECCHHHh
Confidence              22335669999998654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.55  E-value=0.037  Score=47.12  Aligned_cols=24  Identities=42%  Similarity=0.454  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEECCCCccHHHHHHHHhcCC
Confidence            579999999999999999987653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.54  E-value=0.04  Score=47.55  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhH
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ....|+|+|.+|+|||||+..+.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999998765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.52  E-value=0.019  Score=54.35  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+++|+|++|+|||||++.+.....
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CEEEEECCCCCCHHHHHHHhccccc
Confidence            7999999999999999999987654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.51  E-value=0.04  Score=46.39  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.51  E-value=0.13  Score=45.18  Aligned_cols=26  Identities=23%  Similarity=0.560  Sum_probs=23.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .|+|-|.-|+||||.++.+++.+...
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~   27 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKR   27 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            57899999999999999999998765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.48  E-value=0.04  Score=46.31  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.47  E-value=0.049  Score=46.53  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...|+|+|.+|+|||||+..+.+..
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4789999999999999999987643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.45  E-value=0.044  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999997654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.43  E-value=0.044  Score=47.12  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHh
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .....|+|+|.+|+|||||+..+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3447899999999999999988864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.40  E-value=0.043  Score=46.25  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.39  E-value=0.04  Score=46.65  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.37  E-value=0.047  Score=46.22  Aligned_cols=24  Identities=38%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            478999999999999999988653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.37  E-value=0.046  Score=47.39  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+++|.+|+|||||+..+.+..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            478999999999999999998654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.36  E-value=0.058  Score=46.87  Aligned_cols=27  Identities=22%  Similarity=0.039  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .++.|+|+.|+||||++..++.+....
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~   30 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLG   30 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            688999999999999997777666543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.36  E-value=0.051  Score=48.38  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ....|.|+|++|+|||||+..+.+..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34789999999999999999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.36  E-value=0.044  Score=46.30  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999988654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.34  E-value=0.039  Score=46.70  Aligned_cols=22  Identities=50%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      -.|+|+|.+|+|||||+..+.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.33  E-value=0.047  Score=47.30  Aligned_cols=24  Identities=25%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            579999999999999998887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=93.33  E-value=0.044  Score=46.33  Aligned_cols=24  Identities=29%  Similarity=0.227  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.31  E-value=0.048  Score=47.52  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..|+|+|.+|+|||||+..+.+.
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999998864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.30  E-value=0.045  Score=47.64  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ....|+|+|.+|+|||||+..+.+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34789999999999999999998653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=93.30  E-value=0.38  Score=58.35  Aligned_cols=141  Identities=13%  Similarity=0.085  Sum_probs=75.4

Q ss_pred             HHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 044393          165 ITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADR  244 (513)
Q Consensus       165 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  244 (513)
                      +..++..+  +-+.++||+|+|||++|+.+.....   .+ ....++.+...+...+...+-..+.........      
T Consensus      1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~------ 1327 (2695)
T 4akg_A         1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL------ 1327 (2695)
T ss_dssp             HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE------
T ss_pred             HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc------
Confidence            34444555  7889999999999999977765532   12 344566676666665555554443321100000      


Q ss_pred             HHHHHHhccCCeEEEEEecCCCcc--c---------ccccc------cCCC-------CcEEEEEeCchH------HH-h
Q 044393          245 LRLMFSESKGRKILIILDDVWKEL--D---------LETVG------IPAN-------CCKILLTTRLQQ------VC-D  293 (513)
Q Consensus       245 l~~~~~l~~~~~~LlVLDd~~~~~--~---------~~~l~------~~~~-------~~~iivTtr~~~------v~-~  293 (513)
                      +..  -...++++++.+||+.-..  .         +.++.      ....       +..+|.++....      +. .
T Consensus      1328 ~~~--P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A         1328 TLL--PKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp             EEE--EBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred             ccc--CCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Confidence            000  0014688999999963321  0         11111      0000       234555553321      11 1


Q ss_pred             hcCCcceeecCCCChHhHHHHHHHhc
Q 044393          294 RMGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       294 ~~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      .......+.+...+.++-..+|....
T Consensus      1406 llRrf~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A         1406 FTRHAAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp             HHTTEEEEECCCCTTTHHHHHHHHHH
T ss_pred             hhheeeEEEeCCCCHHHHHHHHHHHH
Confidence            11223568888888888888887654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.27  E-value=0.046  Score=46.22  Aligned_cols=24  Identities=29%  Similarity=0.223  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999988643

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.27  E-value=0.11  Score=47.70  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhcC-C-ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          160 SACNQITEALKKG-S-TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       160 ~~~~~l~~~l~~~-~-~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .....+..++... . ...|.++||+|+|||++|..+++..
T Consensus        88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3445566777653 2 3579999999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.26  E-value=0.049  Score=47.03  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            568999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.25  E-value=0.046  Score=46.68  Aligned_cols=24  Identities=38%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999997653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.21  E-value=0.051  Score=46.55  Aligned_cols=25  Identities=36%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .-.|+|+|.+|+|||||+..+.+..
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            3579999999999999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.18  E-value=0.049  Score=46.56  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCc
Confidence            468999999999999999987653

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.17  E-value=0.088  Score=53.39  Aligned_cols=44  Identities=11%  Similarity=-0.015  Sum_probs=32.2

Q ss_pred             chhHHHHHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          157 TTKSACNQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       157 gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+.+..+.+.....  .....+|.+.|++|+||||+++.+...+..
T Consensus       376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            34445555555442  223478999999999999999999999874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.16  E-value=0.055  Score=48.62  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..++|.|++|+||||+++.+...+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999988764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.15  E-value=0.038  Score=55.07  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=24.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|+|+|++|+||||++..++.....+
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~  126 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKR  126 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3689999999999999999999887644

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.14  E-value=0.038  Score=54.74  Aligned_cols=24  Identities=25%  Similarity=0.175  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|+|+|++|+|||||++.+++...
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            369999999999999999987653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.13  E-value=0.049  Score=45.91  Aligned_cols=23  Identities=43%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+|+|.+|+|||||++.+.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            36899999999999999988653

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=93.12  E-value=0.12  Score=49.81  Aligned_cols=44  Identities=32%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhh--hcCCCCeEEEEEEcC
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR--QEKIFDEVGIATVSQ  214 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~  214 (513)
                      +.+...+++.+.|.||+||||+|..++....  ..  -..+..+....
T Consensus        13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~   58 (348)
T 3io3_A           13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDP   58 (348)
T ss_dssp             HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCS
T ss_pred             hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCC
Confidence            3455558999999999999999999988876  33  23344555543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.10  E-value=0.054  Score=46.34  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...|+|+|..|+|||||+..+.+..
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCc
Confidence            3579999999999999999998763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=93.10  E-value=0.054  Score=47.31  Aligned_cols=23  Identities=43%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.09  E-value=0.057  Score=46.88  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|+|+|.+|+|||||+..+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            689999999999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.08  E-value=0.051  Score=45.87  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=93.03  E-value=0.13  Score=49.20  Aligned_cols=45  Identities=29%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD  215 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~  215 (513)
                      +.+....++.+.|.||+||||+|..++......  -..+..+.....
T Consensus        11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~   55 (334)
T 3iqw_A           11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPA   55 (334)
T ss_dssp             HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSS
T ss_pred             hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCC
Confidence            344445788999999999999999999887654  234555555533

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.00  E-value=0.058  Score=45.66  Aligned_cols=24  Identities=29%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|+|+|.+|+|||||+..+.+..
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            579999999999999999997643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.95  E-value=0.05  Score=47.03  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            58999999999999999988653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=92.91  E-value=0.052  Score=51.33  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...|+|+|.+|+|||||+..+.+..
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            3689999999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=92.91  E-value=0.055  Score=46.97  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCC
Confidence            579999999999999999887654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=92.89  E-value=0.057  Score=47.75  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+.+|+|++|+||||+...++.-+.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            6899999999999999998876554

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.88  E-value=0.051  Score=48.55  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|.|+.|+||||+++.+.....
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5799999999999999999987653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.85  E-value=0.056  Score=46.63  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999998654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.85  E-value=0.062  Score=45.81  Aligned_cols=24  Identities=25%  Similarity=0.145  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            579999999999999999998754

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=92.85  E-value=0.092  Score=52.64  Aligned_cols=89  Identities=21%  Similarity=0.190  Sum_probs=50.6

Q ss_pred             ccEEEEEcCCCChHHHHH-HHHHhHhhhcCCCC-eEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCC------
Q 044393          174 TKMVGLHGLGGVGKTTLA-KFVGNQLRQEKIFD-EVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKD------  237 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~------  237 (513)
                      .+.++|.|.+|+|||+|| ..+.+...    .+ ..+++-+.+... ..++.+++...-...       ....+      
T Consensus       163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~  238 (507)
T 1fx0_A          163 GQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL  238 (507)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred             CCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence            488999999999999995 57777653    23 345666665543 334444443211000       01111      


Q ss_pred             HHHHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          238 EEERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      .......+.+++.- .|+..||++||+...
T Consensus       239 a~~~a~tiAEyfrd-~G~dVLli~Dsltr~  267 (507)
T 1fx0_A          239 APYTGAALAEYFMY-RERHTLIIYDDLSKQ  267 (507)
T ss_dssp             HHHHHHHHHHHHHH-TTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHH-cCCcEEEEEecHHHH
Confidence            12223334444444 469999999998543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.83  E-value=0.057  Score=46.98  Aligned_cols=24  Identities=38%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            579999999999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=92.83  E-value=0.044  Score=46.94  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+++|.+|+|||||+..+.+..
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.81  E-value=0.058  Score=46.75  Aligned_cols=24  Identities=25%  Similarity=0.123  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999998643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.81  E-value=0.056  Score=48.66  Aligned_cols=27  Identities=30%  Similarity=0.637  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..|+|.|+.|+||||+++.+...+...
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            799999999999999999999988654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.80  E-value=0.064  Score=45.75  Aligned_cols=24  Identities=25%  Similarity=0.119  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|..|+|||||+..+.+..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.79  E-value=0.06  Score=46.81  Aligned_cols=25  Identities=28%  Similarity=0.244  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      -.|+|+|.+|+|||||++.+.+...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4789999999999999977766543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.79  E-value=0.041  Score=48.31  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      ..|+|+|.+|+|||||+..+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999998875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.77  E-value=0.064  Score=46.20  Aligned_cols=24  Identities=21%  Similarity=0.124  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            578999999999999999998654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.73  E-value=0.037  Score=51.20  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=23.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ...|+|.|+.|+||||+++.+...+.
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            37999999999999999999988763

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.71  E-value=0.066  Score=45.99  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            578999999999999999998653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.69  E-value=0.07  Score=46.38  Aligned_cols=24  Identities=21%  Similarity=0.146  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            579999999999999999998765

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=92.69  E-value=0.46  Score=48.24  Aligned_cols=39  Identities=18%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCC
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQD  215 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~  215 (513)
                      ..+.++|.|..|+|||+|+.++++...    -+..+++-+.+.
T Consensus       231 rGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER  269 (600)
T 3vr4_A          231 KGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGER  269 (600)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred             CCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence            348999999999999999999987643    345667767665

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.68  E-value=0.046  Score=46.78  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .-.|+|+|.+|+|||||+..+.+..
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999987643

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=92.67  E-value=0.085  Score=47.98  Aligned_cols=48  Identities=25%  Similarity=0.160  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i  225 (513)
                      .++.|.|++|+|||+||.+++.....+. -..+++++  -..+...+...+
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s--~E~~~~~~~~~~   78 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVT--LEERARDLRREM   78 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEE--SSSCHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeec--ccCCHHHHHHHH
Confidence            7999999999999999998765432221 12344443  334444444443

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=92.63  E-value=0.052  Score=47.55  Aligned_cols=23  Identities=48%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .-.|+|+|.+|+|||||+..+.+
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            35799999999999999999853

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.63  E-value=0.064  Score=46.15  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            579999999999999999998654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.63  E-value=0.064  Score=46.14  Aligned_cols=24  Identities=29%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999887643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.62  E-value=0.069  Score=45.79  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...|+|+|.+|+|||||+..+.+..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~   30 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQ   30 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            3579999999999999999998543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.61  E-value=0.064  Score=45.86  Aligned_cols=24  Identities=38%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            478999999999999999987654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.60  E-value=0.063  Score=48.74  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ....|+|+|.+|+|||||+..+.+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence            346899999999999999999987543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=92.59  E-value=0.012  Score=52.97  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+++|+|++|+|||||++.++.-....
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~   54 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPD   54 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccC
Confidence            356799999999999999999887654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=92.58  E-value=0.065  Score=45.91  Aligned_cols=23  Identities=30%  Similarity=0.177  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999988764

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=92.57  E-value=0.075  Score=46.90  Aligned_cols=26  Identities=15%  Similarity=0.166  Sum_probs=23.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+|+|.|+.|+||||+++.++..+..
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~   32 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNI   32 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            68999999999999999999998763

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.56  E-value=0.07  Score=47.00  Aligned_cols=24  Identities=38%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            578999999999999999987653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.54  E-value=0.072  Score=45.61  Aligned_cols=24  Identities=25%  Similarity=0.187  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999988654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=92.52  E-value=0.11  Score=51.88  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             chhHHHHHHHHHHhc-----------CCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          157 TTKSACNQITEALKK-----------GSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       157 gr~~~~~~l~~~l~~-----------~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      |-+..++.+...+..           .+...|+|+|++|+|||||++.+.+..
T Consensus       152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            556667777666631           113489999999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.50  E-value=0.066  Score=46.99  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ...|+|+|.+|+|||||+..+.+..
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3579999999999999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.50  E-value=0.066  Score=46.73  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .-.|+|+|.+|+|||||+..+.+..
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3679999999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=92.47  E-value=0.073  Score=47.04  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            579999999999999999998753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=92.46  E-value=0.069  Score=51.45  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+.+|+|++|+|||||+..++.-.
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            688999999999999999886543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.46  E-value=0.073  Score=46.80  Aligned_cols=25  Identities=36%  Similarity=0.296  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .-.|+|+|.+|+|||||+..+.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3579999999999999999987754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.45  E-value=0.065  Score=49.77  Aligned_cols=24  Identities=38%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|+|+|.+|+|||||...+.+..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.43  E-value=0.07  Score=46.27  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            578999999999999999998654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.43  E-value=0.075  Score=46.26  Aligned_cols=24  Identities=29%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|..|+|||||+..+.+..
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            579999999999999999998654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.42  E-value=0.074  Score=47.14  Aligned_cols=24  Identities=29%  Similarity=0.166  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|+|+|.+|+|||||+..+.+..
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.41  E-value=0.075  Score=46.41  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            579999999999999999998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.40  E-value=0.075  Score=46.62  Aligned_cols=25  Identities=32%  Similarity=0.262  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .-.|+|+|.+|+|||||+..+.+..
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3679999999999999999998754

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=92.40  E-value=0.16  Score=46.14  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=30.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~  218 (513)
                      .|+|.|.||+||||++..++..+...+  ..+..+......+.
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l   42 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCL   42 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcCh
Confidence            467799999999999999999887653  34666666554443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=92.39  E-value=1.1  Score=44.81  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||...+.+..
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            469999999999999999998764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=92.38  E-value=0.071  Score=46.18  Aligned_cols=24  Identities=25%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            579999999999999999988654

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=92.37  E-value=0.16  Score=46.92  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ  214 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~  214 (513)
                      ++|+|.|.||+||||++..++..+...+  ..+..+....
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~   39 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECT
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCC
Confidence            5788899999999999999998887542  2455565553

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=92.35  E-value=0.074  Score=45.23  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .-|.|.|++|+||||||..+..+
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            67899999999999999998774

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.31  E-value=0.073  Score=46.24  Aligned_cols=24  Identities=25%  Similarity=0.158  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            478999999999999999988653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.29  E-value=0.074  Score=46.31  Aligned_cols=24  Identities=29%  Similarity=0.236  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            579999999999999999998754

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=92.28  E-value=0.21  Score=52.76  Aligned_cols=61  Identities=21%  Similarity=0.176  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHH
Q 044393          160 SACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSEL  225 (513)
Q Consensus       160 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i  225 (513)
                      ...+.+...+...  .+..|.||+|+|||+.+..+....-..   ...+.++...+..+..+...+
T Consensus       193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL  253 (646)
T 4b3f_X          193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERL  253 (646)
T ss_dssp             HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHH
Confidence            3445566666655  688999999999997665555444332   124555555544444554444

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.27  E-value=0.073  Score=46.40  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            57999999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.24  E-value=0.071  Score=46.79  Aligned_cols=24  Identities=21%  Similarity=0.153  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999988654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=92.24  E-value=0.072  Score=51.56  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+.+|+|++|+|||||...++.-.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHhc
Confidence            589999999999999999998643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=92.21  E-value=0.079  Score=47.16  Aligned_cols=22  Identities=45%  Similarity=0.515  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      -.|+|+|.+|+|||||+..+.+
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999874

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.19  E-value=0.084  Score=45.89  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|..|+|||||+..+.+..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            479999999999999999998754

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=92.18  E-value=0.093  Score=46.79  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ..|++.|+.|+||||+++.+...+..
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            78999999999999999999998864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=92.17  E-value=0.069  Score=46.90  Aligned_cols=24  Identities=21%  Similarity=0.126  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC--
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            578999999999999999987543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.15  E-value=0.073  Score=45.92  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..-.|+|+|.+|+|||||+..+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.13  E-value=0.086  Score=45.65  Aligned_cols=24  Identities=25%  Similarity=0.086  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|..|+|||||+..+.+..
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            679999999999999999987653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=92.09  E-value=0.079  Score=46.62  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999987654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=92.07  E-value=0.077  Score=51.66  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+.+|+|++|+|||||...++.-.
T Consensus        24 g~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999887554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=92.05  E-value=0.08  Score=46.27  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||++.+.+..
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            689999999999999999776643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.04  E-value=0.089  Score=46.05  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .-.|+|+|.+|+|||||+..+.+..
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCC
Confidence            3689999999999999999997653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=92.01  E-value=0.074  Score=46.58  Aligned_cols=24  Identities=33%  Similarity=0.234  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            578999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	513
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	7e-35
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.001

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  129 bits (326), Expect = 7e-35
 Identities = 38/262 (14%), Positives = 83/262 (31%), Gaps = 27/262 (10%)

Query: 159 KSACNQITEALKKGS---TKMVGLHGLGGVGKTTLAKFVGNQLRQ--EKIFDEVGIATVS 213
           +   +++ + L +     +  + LHG  G GK+ +A    ++  Q     +D +     S
Sbjct: 26  EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 85

Query: 214 QDPDIINVQSELVK--------WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVW 265
                                  L      +       +  +  +       L + DDV 
Sbjct: 86  GTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV 145

Query: 266 KELDLETVGIPANCCKILLTTRLQQVCDRMGCDTRI-KLDALDQAEGLDLLREHAGIDVA 324
           +E  +          + L+TTR  ++ +         ++ +L+  E  D L  +      
Sbjct: 146 QEETIRW--AQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV 203

Query: 325 DTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIEGIDKDSL 384
                DV  +  +   G P  + +   +   +  ++     +KL++  L  +E I     
Sbjct: 204 GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECI----- 258

Query: 385 GVYGCLKFSYDYLNGEDSRSCF 406
                  +SY  L     + C 
Sbjct: 259 -----TPYSYKSL-AMALQRCV 274

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 8/173 (4%)

Query: 173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII--NVQSELVKWLG 230
           +T+M+ L+G    GK+ + + + + L +  +   V     +    +       E     G
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 231 WELKEKDEEERADRLRLMFSESKGRKILIILDDV----WKELDLETVGIPANCCKILLTT 286
             +  +           + + ++    +II D        +    +     +   + +  
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121

Query: 287 RLQQVCDRM-GCDTRIKLDALDQAEGLDLLREHA-GIDVADTTLTDVSKRVAD 337
                  R      R+   A  QA  +    E+   +D       + +  +A 
Sbjct: 122 DGAVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHKESIECAWAIAA 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	100.0
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.25
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.99
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.98
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.86
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.85
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.85
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.82
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.68
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.67
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.57
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.56
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.54
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.52
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.5
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.32
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.32
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.29
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.28
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.27
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.25
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.21
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.19
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.18
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.17
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.14
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.13
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.08
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.03
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.02
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.01
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.99
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.98
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.88
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.87
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.83
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.82
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.82
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.78
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.76
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.75
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.53
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.27
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.16
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.09
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.05
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.05
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.02
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.01
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.01
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.97
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.97
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.96
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.95
d1okkd2	207	GTPase domain of the signal recognition particle r	96.95
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.93
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.89
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.84
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.81
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.77
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.76
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.76
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.74
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.71
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.71
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.69
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.67
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.63
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.62
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.61
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.58
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.55
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.54
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.49
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.47
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.46
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.46
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.4
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.38
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.37
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.36
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.32
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.31
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.29
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.25
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.23
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.2
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.15
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.14
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.11
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.11
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.08
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.03
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.03
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.02
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.01
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.96
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.91
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.85
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.82
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.75
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.5
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.44
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.41
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.39
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.39
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.38
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.36
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.34
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.34
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.25
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.24
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.19
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.16
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.13
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.02
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.89
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.82
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.76
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.76
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.74
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.66
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.59
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.56
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.55
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.37
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	94.34
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.34
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.33
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.29
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.23
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.21
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.2
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.19
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.18
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.16
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.11
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.09
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.07
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.01
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.01
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.99
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.92
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.87
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.84
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.79
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.76
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.75
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.73
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.72
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.72
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.71
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.7
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.67
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.63
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.56
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.5
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.47
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.47
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.46
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.44
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.44
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.39
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.36
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	93.35
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.32
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.3
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.27
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.25
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.24
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.23
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.13
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.09
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.07
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.07
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.02
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.97
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	92.96
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.92
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.89
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.72
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.69
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.67
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.63
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.57
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.54
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	92.41
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.32
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.27
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.02
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.01
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.97
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.89
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.82
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.69
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.56
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	91.56
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.44
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.39
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.25
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.11
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.6
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.03
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.88
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.88
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	89.61
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.02
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	88.84
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.67
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.29
d1tuea_	205	Replication protein E1 helicase domain {Human papi	88.07
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.98
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.16
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.55
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.44
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.08
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	85.85
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.25
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.08
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	83.55
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.43
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	81.55
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	80.33
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	80.28

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.4e-38  Score=301.14  Aligned_cols=239  Identities=15%  Similarity=0.105  Sum_probs=189.9

Q ss_pred             ccchhHHHHHHHHHHhc---CCccEEEEEcCCCChHHHHHHHHHhHhh--hcCCCCeEEEEEEcCCCChHHHHHHHHH--
Q 044393          155 FETTKSACNQITEALKK---GSTKMVGLHGLGGVGKTTLAKFVGNQLR--QEKIFDEVGIATVSQDPDIINVQSELVK--  227 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~--  227 (513)
                      ++||+.++++|..+|.+   .+..+|+|+||||+||||||+.++++..  ...+|++++|+++++.++...+...+..  
T Consensus        22 ~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~  101 (277)
T d2a5yb3          22 CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL  101 (277)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred             eeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHH
Confidence            55999999999998843   3468999999999999999999998865  5667999999999998887766655543  


Q ss_pred             -HhCCCCC-------CCCHHH-HHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCcEEEEEeCchHHHhhcCCc
Q 044393          228 -WLGWELK-------EKDEEE-RADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCCKILLTTRLQQVCDRMGCD  298 (513)
Q Consensus       228 -~l~~~~~-------~~~~~~-~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~~iivTtr~~~v~~~~~~~  298 (513)
                       .++....       ...... ....+.   ....++++|+||||+|+..++..+.  ..+++||||||+..++..+...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~kr~LlVLDDv~~~~~~~~~~--~~~srilvTTR~~~v~~~~~~~  176 (277)
T d2a5yb3         102 MLKSEDDLLNFPSVEHVTSVVLKRMICN---ALIDRPNTLFVFDDVVQEETIRWAQ--ELRLRCLVTTRDVEISNAASQT  176 (277)
T ss_dssp             HHTTTSCCTTCCCCTTCCHHHHHHHHHH---HHTTSTTEEEEEEEECCHHHHHHHH--HTTCEEEEEESBGGGGGGCCSC
T ss_pred             HHhcchhhcCCccchhhhhHHHHHHHHH---HHhccCCeeEecchhhHHhhhhhhc--ccCceEEEEeehHHHHHhcCCC
Confidence             3332211       111122 222233   4445599999999999988876542  2489999999999999887654


Q ss_pred             -ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHHhhcccCCcc
Q 044393          299 -TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVVGSALTGRNADEWNVALDKLQNAKLDKIE  377 (513)
Q Consensus       299 -~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~  377 (513)
                       +.|++++|+.++|++||.++++.....+..++++++|+++|+|+||||+++|+.|+.++.+.|.+..+.|.+....   
T Consensus       177 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~---  253 (277)
T d2a5yb3         177 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLV---  253 (277)
T ss_dssp             EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSS---
T ss_pred             CceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHH---
Confidence             6799999999999999999887655556678899999999999999999999999999999999998888654221   


Q ss_pred             ccccccccccchhhccccCCCCccchHHHhhh
Q 044393          378 GIDKDSLGVYGCLKFSYDYLNGEDSRSCFLLC  409 (513)
Q Consensus       378 ~~~~~~~~v~~~l~~sy~~L~~~~~k~~~~~~  409 (513)
                             ++..++.+||++||+ ++|.||.++
T Consensus       254 -------~v~~il~~sY~~L~~-~lk~c~~~l  277 (277)
T d2a5yb3         254 -------GVECITPYSYKSLAM-ALQRCVEVL  277 (277)
T ss_dssp             -------TTCCCSSSSSSSHHH-HHHHHHHTS
T ss_pred             -------HHHHHHHHHHhcccH-HHHHHHHhC
Confidence                   577889999999999 999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.25  E-value=1e-11  Score=115.80  Aligned_cols=192  Identities=15%  Similarity=0.129  Sum_probs=111.3

Q ss_pred             cccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-----CCChHHHHHH
Q 044393          150 RFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-----DPDIINVQSE  224 (513)
Q Consensus       150 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~  224 (513)
                      .....|+||+.+++.|...    ..+.+.|+|++|+|||||++.+++.....     ..|+.+..     ......+...
T Consensus         9 ~~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~   79 (283)
T d2fnaa2           9 DNRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELNLP-----YIYLDLRKFEERNYISYKDFLLE   79 (283)
T ss_dssp             CSGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEEEGGGGTTCSCCCHHHHHHH
T ss_pred             CChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCCCC-----eEEEEeccccccccccHHHHHHH
Confidence            3457799999999998763    33789999999999999999998876432     23443321     1122333333


Q ss_pred             HHHHhC--------------CCC-------------CCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccc--ccc--
Q 044393          225 LVKWLG--------------WEL-------------KEKDEEERADRLRLMFSESKGRKILIILDDVWKELDL--ETV--  273 (513)
Q Consensus       225 i~~~l~--------------~~~-------------~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~--~~l--  273 (513)
                      +.....              ...             ...........+..+ ....+++.++++|++....+.  ..+  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~i~id~~~~~~~~~~~~~~~  158 (283)
T d2fnaa2          80 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESF-EQASKDNVIIVLDEAQELVKLRGVNLLP  158 (283)
T ss_dssp             HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHH-HHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred             HHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHH-HhhcccccccccchhhhhcccchHHHHH
Confidence            322210              000             000011122223222 223358999999988543221  111  


Q ss_pred             -----ccCCCCcEEEEEeCchHHHhhc------------CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHH
Q 044393          274 -----GIPANCCKILLTTRLQQVCDRM------------GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVA  336 (513)
Q Consensus       274 -----~~~~~~~~iivTtr~~~v~~~~------------~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~  336 (513)
                           .........+++++.......+            .....+.|.+|+.+++.+++.+.+.......+   ....|+
T Consensus       159 ~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~---~~~~i~  235 (283)
T d2fnaa2         159 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK---DYEVVY  235 (283)
T ss_dssp             HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC---CHHHHH
T ss_pred             HHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHH---HHHHHH
Confidence                 1112245556665554332211            11256889999999999999876542111111   246899


Q ss_pred             HHhCCCchHHHHHHHHhc
Q 044393          337 DECKGLPLAIKVVGSALT  354 (513)
Q Consensus       337 ~~~~G~PLai~~~~~~l~  354 (513)
                      +.++|+|..+..++..+.
T Consensus       236 ~~~~G~P~~L~~~~~~~~  253 (283)
T d2fnaa2         236 EKIGGIPGWLTYFGFIYL  253 (283)
T ss_dssp             HHHCSCHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHH
Confidence            999999999999887664

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=2.1e-09  Score=96.32  Aligned_cols=182  Identities=17%  Similarity=0.216  Sum_probs=114.6

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .|..+..++|.+..++.|..++.++..+-+.++||+|+||||+|+.+++....+..-....-.+.+.......+...+..
T Consensus        10 rP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~   89 (224)
T d1sxjb2          10 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKH   89 (224)
T ss_dssp             CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHH
Confidence            35667788999999999999999888777889999999999999999988764321112333444443333332222221


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----c-cccccCCCCcEEEEEeCch-HHHhh-cCCcc
Q 044393          228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----L-ETVGIPANCCKILLTTRLQ-QVCDR-MGCDT  299 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~-~~l~~~~~~~~iivTtr~~-~v~~~-~~~~~  299 (513)
                      ......                ....++.-++|+|++.....     + ..+..+...+.++++|.+. .+... .+...
T Consensus        90 ~~~~~~----------------~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~  153 (224)
T d1sxjb2          90 FAQKKL----------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA  153 (224)
T ss_dssp             HHHBCC----------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             HHHhhc----------------cCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHH
Confidence            111000                12234667999999866532     1 1112223366777777653 22222 22336


Q ss_pred             eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      .+++.+++.++-..++.+.+..+...- ..+....|++.|+|.+--+
T Consensus       154 ~i~~~~~~~~~i~~~l~~i~~~e~~~i-~~~~l~~I~~~s~Gd~R~a  199 (224)
T d1sxjb2         154 ILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQA  199 (224)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHH
T ss_pred             HhhhcccchhhhHHHHHHHHHhcccCC-CHHHHHHHHHHcCCcHHHH
Confidence            799999999999999987664322222 2567899999999987643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=2.7e-09  Score=95.88  Aligned_cols=177  Identities=13%  Similarity=0.090  Sum_probs=110.3

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKW  228 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~  228 (513)
                      |..+..++|.+..++.|..++..+..+.+.++||+|+||||+|+.+++............-.+.+...............
T Consensus        10 P~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~   89 (227)
T d1sxjc2          10 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDF   89 (227)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHH
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhc
Confidence            55677788999999999999998877668899999999999999999987543222222223333332222111111110


Q ss_pred             hCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HHhh-cCCcce
Q 044393          229 LGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VCDR-MGCDTR  300 (513)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~~~-~~~~~~  300 (513)
                      .                 .......++.-++|+|++.....      +..+......+.++++|.... +... ......
T Consensus        90 ~-----------------~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~  152 (227)
T d1sxjc2          90 A-----------------STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR  152 (227)
T ss_dssp             H-----------------HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred             c-----------------ccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhh
Confidence            0                 00022234556899999865421      111222233777777777532 2221 223367


Q ss_pred             eecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCc
Q 044393          301 IKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLP  343 (513)
Q Consensus       301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~P  343 (513)
                      +.+.+++.++-..++.+.+..+...- ..+....|++.++|..
T Consensus       153 i~~~~~~~~~i~~~l~~I~~~e~i~i-~~~~l~~i~~~s~Gd~  194 (227)
T d1sxjc2         153 FRFQPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDM  194 (227)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCH
T ss_pred             hccccccccccccccccccccccccC-CHHHHHHHHHHcCCcH
Confidence            89999999999999988765432222 2566788999999864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.5e-08  Score=90.08  Aligned_cols=193  Identities=19%  Similarity=0.201  Sum_probs=112.3

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      |..+..++|.+...+.|..++.++.. +.+.|+|++|+||||+|+.+++..........       ...........+..
T Consensus         8 P~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~-------~~~~~~~~~~~i~~   80 (239)
T d1njfa_           8 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQ   80 (239)
T ss_dssp             CSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCS-------SCCSCSHHHHHHHH
T ss_pred             CCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCcccccc-------CccccchHHHHHHc
Confidence            45677888999999999999988764 56889999999999999999887654321110       00111111112211


Q ss_pred             HhCCC------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc-----c-cccccCCCCcEEEEEeCchH-HHh
Q 044393          228 WLGWE------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD-----L-ETVGIPANCCKILLTTRLQQ-VCD  293 (513)
Q Consensus       228 ~l~~~------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~-----~-~~l~~~~~~~~iivTtr~~~-v~~  293 (513)
                      .-...      ......+.....+.... ....++..++|||++.....     + ..+..+.+++.+|++|.+.. +..
T Consensus        81 ~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~  160 (239)
T d1njfa_          81 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV  160 (239)
T ss_dssp             TCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred             CCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccCh
Confidence            10000      00111122222111100 11224667999999976521     1 11223344778888877642 222


Q ss_pred             hc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch-HHHHH
Q 044393          294 RM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL-AIKVV  349 (513)
Q Consensus       294 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~  349 (513)
                      .+ .....+.+.+++.++-...+...+..+... -.++.+..|++.++|.+- |+..+
T Consensus       161 ~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~-~~~~~l~~i~~~s~Gd~R~ain~l  217 (239)
T d1njfa_         161 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLT  217 (239)
T ss_dssp             HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             hHhhhhcccccccCcHHHhhhHHHHHHhhhccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            22 223679999999999988888776422222 225678899999999885 44433

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.85  E-value=1.2e-08  Score=91.81  Aligned_cols=177  Identities=17%  Similarity=0.144  Sum_probs=107.1

Q ss_pred             ccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-CCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          149 PRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      |..+..++|.+...+.|..++..+..+.+.++||+|+||||+|+.+++...... .++ ..-++.+...+. ........
T Consensus        20 P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~-~~e~n~s~~~~~-~~~~~~~~   97 (231)
T d1iqpa2          20 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHN-FLELNASDERGI-NVIREKVK   97 (231)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH-EEEEETTCHHHH-HTTHHHHH
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCC-eeEEecCcccch-hHHHHHHH
Confidence            455677889999999999999988888899999999999999999998765321 011 122222211110 00011111


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc--cccc----ccCCCCcEEEEEeCch-HHHhhc-CCcc
Q 044393          228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD--LETV----GIPANCCKILLTTRLQ-QVCDRM-GCDT  299 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~--~~~l----~~~~~~~~iivTtr~~-~v~~~~-~~~~  299 (513)
                      .                ..........+..++++||+.....  ...+    ........+|+||... .+...+ ....
T Consensus        98 ~----------------~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~  161 (231)
T d1iqpa2          98 E----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA  161 (231)
T ss_dssp             H----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred             H----------------HHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccc
Confidence            0                0000022234778999999865421  1111    1222255666666543 222221 1236


Q ss_pred             eeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          300 RIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      .+.+.+.+.++....+.+.+...... -..+..+.|++.|+|..-
T Consensus       162 ~i~~~~~~~~~~~~~l~~~~~~e~i~-i~~~~l~~I~~~~~gdiR  205 (231)
T d1iqpa2         162 IFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMR  205 (231)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHH
T ss_pred             cccccccchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHH
Confidence            79999999999999998877543321 225677899999998654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.6e-08  Score=91.28  Aligned_cols=189  Identities=16%  Similarity=0.182  Sum_probs=112.4

Q ss_pred             CccccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC-CCCeEEEEEEcCCCChHHHHHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-IFDEVGIATVSQDPDIINVQSELV  226 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~  226 (513)
                      .|..+..++|++...+.|..++..+..+.+.++||+|+||||+++.+++...... ........+.+...........+-
T Consensus         7 ~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (237)
T d1sxjd2           7 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVK   86 (237)
T ss_dssp             CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHH
Confidence            3556677889998999999999888777789999999999999999998864321 122233344444444433332222


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----cccc-ccCCCCcEEEEEeCch-HHHhhc-CCc
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LETV-GIPANCCKILLTTRLQ-QVCDRM-GCD  298 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~l-~~~~~~~~iivTtr~~-~v~~~~-~~~  298 (513)
                      .............    .+.   ....++.-++|+|++.....     +..+ ........+|+|+... .....+ ...
T Consensus        87 ~~~~~~~~~~~~~----~~~---~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~  159 (237)
T d1sxjd2          87 NFARLTVSKPSKH----DLE---NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC  159 (237)
T ss_dssp             HHHHSCCCCCCTT----HHH---HSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred             HHhhhhhhhhhHH----HHh---hccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchh
Confidence            2111111111110    011   22333555899999865421     1111 1222256677766652 211111 112


Q ss_pred             ceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          299 TRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      ..+.+.+++.++...++.+.+..+...- ..+..+.|++.++|.+-
T Consensus       160 ~~i~f~~~~~~~~~~~L~~i~~~e~i~i-~~~~l~~ia~~s~gd~R  204 (237)
T d1sxjd2         160 SKFRFKALDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDLR  204 (237)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCHH
T ss_pred             hhhccccccccccchhhhhhhhhhcCcC-CHHHHHHHHHHcCCCHH
Confidence            5789999999999999988775433222 25778999999988653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.82  E-value=4.7e-07  Score=82.92  Aligned_cols=183  Identities=14%  Similarity=0.130  Sum_probs=113.4

Q ss_pred             cccchhHHHHHHHHHHhc------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHH
Q 044393          154 SFETTKSACNQITEALKK------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVK  227 (513)
Q Consensus       154 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~  227 (513)
                      .++||+.+++.|..+|..      ...+.+.|+|++|+||||+|+.+++.......+ ..+++..............+..
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   95 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNFTAIIGEIAR   95 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCC-cEEEecchhhhhhhhhhhhhHH
Confidence            467999999998888842      234689999999999999999999998765333 3456666677777888888888


Q ss_pred             HhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccccccC-----CCCcEEEEEeCchHHHhhc
Q 044393          228 WLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LETVGIP-----ANCCKILLTTRLQQVCDRM  295 (513)
Q Consensus       228 ~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~l~~~-----~~~~~iivTtr~~~v~~~~  295 (513)
                      ..+....  ..........+....... ....++++|++++...     ...+...     .....+|.++........+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  174 (276)
T d1fnna2          96 SLNIPFPRRGLSRDEFLALLVEHLRER-DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL  174 (276)
T ss_dssp             HTTCCCCSSCCCHHHHHHHHHHHHHHT-TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred             hhhhhhhhhccchhHHHHHHHHHHhhc-ccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhhhc
Confidence            7765443  233344444444422222 3667777887765432     1111111     1144566666654433221


Q ss_pred             -------CCcceeecCCCChHhHHHHHHHhcCC-CCCCCchHHHHHHHHHH
Q 044393          296 -------GCDTRIKLDALDQAEGLDLLREHAGI-DVADTTLTDVSKRVADE  338 (513)
Q Consensus       296 -------~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~  338 (513)
                             .....+.+.+++.++..+++.+++.. .......++..+.|++.
T Consensus       175 ~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~  225 (276)
T d1fnna2         175 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADI  225 (276)
T ss_dssp             CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHH
T ss_pred             chhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence                   11245889999999999999876531 11111224555666654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2.3e-07  Score=83.96  Aligned_cols=152  Identities=15%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             ccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEE-EEcCCCChHHHHHHHHH
Q 044393          153 SSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIA-TVSQDPDIINVQSELVK  227 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv-~~~~~~~~~~~~~~i~~  227 (513)
                      .+.+||+.+++++...|......-+.++|++|+|||+++..++.......    .....+|. +.+.-          +.
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~l----------ia   87 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------LA   87 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------C
T ss_pred             CcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechH----------hc
Confidence            45679999999999999876667788999999999999999998875431    12334443 21110          00


Q ss_pred             HhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcc----------cccccccC-C--CCcEEEEEeCchHHHhh
Q 044393          228 WLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKEL----------DLETVGIP-A--NCCKILLTTRLQQVCDR  294 (513)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~----------~~~~l~~~-~--~~~~iivTtr~~~v~~~  294 (513)
                        +... ...-+++...+..  .+...++.+|++||+....          +...+..| .  +.-++|.+|..++....
T Consensus        88 --g~~~-~g~~e~r~~~i~~--~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~  162 (268)
T d1r6bx2          88 --GTKY-RGDFEKRFKALLK--QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI  162 (268)
T ss_dssp             --CCCC-SSCHHHHHHHHHH--HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCC
T ss_pred             --cCcc-chhHHHHHHHHHH--HhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHH
Confidence              0111 1222333333333  4445578999999985442          23333322 2  26799999998777554


Q ss_pred             cCC-------cceeecCCCChHhHHHHHHHhc
Q 044393          295 MGC-------DTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       295 ~~~-------~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      ...       ...+.+++++.+++..++....
T Consensus       163 ~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         163 FEKDRALARRFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HhhcHHHHhhhcccccCCCCHHHHHHHHHHhh
Confidence            322       3679999999999999987644

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=8.2e-08  Score=87.24  Aligned_cols=189  Identities=14%  Similarity=0.080  Sum_probs=100.4

Q ss_pred             ccccccccchhHHHHHHHHHHhcC-CccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcC---------
Q 044393          149 PRFFSSFETTKSACNQITEALKKG-STKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQ---------  214 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~~-~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~---------  214 (513)
                      |..+..++|++...+.|..++.++ ..+-+.|+||+|+||||+|+.+++......    ..+...+.....         
T Consensus         7 P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (252)
T d1sxje2           7 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS   86 (252)
T ss_dssp             CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhcc
Confidence            445667889998888888888655 345678999999999999999998763211    011111110000         


Q ss_pred             ------------CCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----ccc-cccC
Q 044393          215 ------------DPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----LET-VGIP  276 (513)
Q Consensus       215 ------------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----~~~-l~~~  276 (513)
                                  ........................      ...  ....++.-++|||++.....     +.. +..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~  158 (252)
T d1sxje2          87 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ------DSK--DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY  158 (252)
T ss_dssp             CSSEEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred             CCccceeeecccccCCcceeeehhhhhhhhhhhhhh------hcc--cccCCCceEEEeccccccccccchhhhcccccc
Confidence                        001111112222211110000000      000  11123556899999876421     111 1223


Q ss_pred             CCCcEEEEEeCchH-HHhh-cCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          277 ANCCKILLTTRLQQ-VCDR-MGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       277 ~~~~~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      ...+++|+||.+.. +... .+....+++.+++.++..+++...+..+......++..+.|++.+.|.+-.
T Consensus       159 ~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~  229 (252)
T d1sxje2         159 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRV  229 (252)
T ss_dssp             TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHH
T ss_pred             cccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHH
Confidence            34677788877642 1111 112257899999999999999876642211112246678899999997653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=1.9e-07  Score=84.89  Aligned_cols=185  Identities=16%  Similarity=0.083  Sum_probs=104.2

Q ss_pred             ccccccccchhHHHHHHHHHHhc-----------------CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEE
Q 044393          149 PRFFSSFETTKSACNQITEALKK-----------------GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIAT  211 (513)
Q Consensus       149 ~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~  211 (513)
                      |..+..++|.+..+++|..++..                 +..+.+.++||+|+||||+|+.+++.....     ..+++
T Consensus        10 P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~-----~~~~~   84 (253)
T d1sxja2          10 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD-----ILEQN   84 (253)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE-----EEEEC
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhh-----hhccc
Confidence            44567778889889999888742                 224689999999999999999999976532     33444


Q ss_pred             EcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCcccc-----ccccc--CCCCcEEEE
Q 044393          212 VSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELDL-----ETVGI--PANCCKILL  284 (513)
Q Consensus       212 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~-----~~l~~--~~~~~~iiv  284 (513)
                      .+...+... +..................  .....  ....++..++++|++.....-     ..+..  ......+++
T Consensus        85 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~  159 (253)
T d1sxja2          85 ASDVRSKTL-LNAGVKNALDNMSVVGYFK--HNEEA--QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLIL  159 (253)
T ss_dssp             TTSCCCHHH-HHHTGGGGTTBCCSTTTTT--C------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEE
T ss_pred             cccchhhHH-HHHHHHHHhhcchhhhhhh--hhhhc--ccccccceEEEeeeccccccchhhhhHHHhhhhccccccccc
Confidence            444433332 2222222211111000000  00000  233457889999998654221     11110  011334544


Q ss_pred             EeCc--hHHHhhc-CCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          285 TTRL--QQVCDRM-GCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       285 Ttr~--~~v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      |+..  ......+ .....+.+.+++.++-...+...+..+...-. ++....|++.++|..-
T Consensus       160 i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~-~~~l~~i~~~s~GDiR  221 (253)
T d1sxja2         160 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDRLIQTTRGDIR  221 (253)
T ss_dssp             EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-TTHHHHHHHHTTTCHH
T ss_pred             ccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCC-HHHHHHHHHhCCCcHH
Confidence            4433  2122222 33468999999999999988876632111111 2456889999999763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.3e-06  Score=76.34  Aligned_cols=177  Identities=12%  Similarity=0.051  Sum_probs=102.1

Q ss_pred             chhHHHHHHHHHHhcCCc-cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCC---
Q 044393          157 TTKSACNQITEALKKGST-KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWE---  232 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---  232 (513)
                      ..+...+.|...+..+.. +.+.++|++|+||||+|+.+++.+-.......       .......-...+.......   
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~   78 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYT   78 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT-------BCCSCSHHHHHHHHTCCTTEEE
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccccccc-------ccccccchhhhhhhccccccch
Confidence            456678889999888764 56999999999999999999887632100000       0000000011111110000   


Q ss_pred             ------CCCCCHHHHHHHHHHHH-HhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HHhhc-CC
Q 044393          233 ------LKEKDEEERADRLRLMF-SESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VCDRM-GC  297 (513)
Q Consensus       233 ------~~~~~~~~~~~~l~~~~-~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~~~~-~~  297 (513)
                            ......++.......+. ....+++-++|+||+.....      +..+..+..+..+|+||++.. +...+ +.
T Consensus        79 ~~~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SR  158 (207)
T d1a5ta2          79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR  158 (207)
T ss_dssp             ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred             hhhhhcccccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcce
Confidence                  00111122222222100 11234677999999976532      222234445888888888743 33322 22


Q ss_pred             cceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHH
Q 044393          298 DTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAI  346 (513)
Q Consensus       298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai  346 (513)
                      ...+.+.+++.++....+.+....      .++.+..|++.++|.|-.+
T Consensus       159 c~~i~~~~~~~~~~~~~L~~~~~~------~~~~~~~i~~~s~Gs~r~a  201 (207)
T d1a5ta2         159 CRLHYLAPPPEQYAVTWLSREVTM------SQDALLAALRLSAGSPGAA  201 (207)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHCCC------CHHHHHHHHHHTTTCHHHH
T ss_pred             eEEEecCCCCHHHHHHHHHHcCCC------CHHHHHHHHHHcCCCHHHH
Confidence            368999999999999999876531      1467888999999988644

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3e-07  Score=78.47  Aligned_cols=148  Identities=14%  Similarity=0.178  Sum_probs=91.4

Q ss_pred             ccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCChHHHHHHHHHH
Q 044393          153 SSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDIINVQSELVKW  228 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~  228 (513)
                      .+.+||+.+++++...|......-+.++|++|+|||+++..++.+.....    ..+..+|.-     +..    .++. 
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~----~LiA-   91 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMG----ALVA-   91 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHH----HHHT-
T ss_pred             CCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHH----HHhc-
Confidence            34669999999999999876667889999999999999999998876431    223344432     111    1111 


Q ss_pred             hCCCCCCCCHHHHHHHHHHHH-Hh-ccCCeEEEEEecCCCccc---------ccccccC---CCCcEEEEEeCchHHHhh
Q 044393          229 LGWELKEKDEEERADRLRLMF-SE-SKGRKILIILDDVWKELD---------LETVGIP---ANCCKILLTTRLQQVCDR  294 (513)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~~~-~l-~~~~~~LlVLDd~~~~~~---------~~~l~~~---~~~~~iivTtr~~~v~~~  294 (513)
                           ......+...++..++ .+ ....+.+|++||+.....         ...+..|   .+.-++|.+|..++....
T Consensus        92 -----g~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~  166 (195)
T d1jbka_          92 -----GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY  166 (195)
T ss_dssp             -----TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHH
T ss_pred             -----cCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHH
Confidence                 0111122233333222 33 233579999999855421         2222111   226788988887765543


Q ss_pred             c-------CCcceeecCCCChHhHHHHH
Q 044393          295 M-------GCDTRIKLDALDQAEGLDLL  315 (513)
Q Consensus       295 ~-------~~~~~~~l~~L~~~e~~~lf  315 (513)
                      .       .....+.++..+.+++..++
T Consensus       167 ~e~d~aL~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         167 IEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             TTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence            3       23467899999988886543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=3.7e-06  Score=75.23  Aligned_cols=171  Identities=16%  Similarity=0.213  Sum_probs=101.6

Q ss_pred             CccccccccchhHHHHHHHHHHhc-----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKK-----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      .|..+..++|.+..++.|..++..     ...+-+.++||+|+||||+|+.+++.....     ....+.+......+ .
T Consensus         4 RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~-----~~~~~~~~~~~~~~-~   77 (238)
T d1in4a2           4 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-----IHVTSGPVLVKQGD-M   77 (238)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-----EEEEETTTCCSHHH-H
T ss_pred             CCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCC-----cccccCcccccHHH-H
Confidence            456677889999999988888742     224568899999999999999999887533     12222222222211 1


Q ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccc---------------cccCCC
Q 044393          223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LET---------------VGIPAN  278 (513)
Q Consensus       223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~---------------l~~~~~  278 (513)
                      ..++                       ... +++..+++|++.....         .+.               +....+
T Consensus        78 ~~~~-----------------------~~~-~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (238)
T d1in4a2          78 AAIL-----------------------TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ  133 (238)
T ss_dssp             HHHH-----------------------HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C
T ss_pred             HHHH-----------------------Hhh-ccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCC
Confidence            1111                       111 2455666776643310         000               001112


Q ss_pred             CcEEEEEeCchH-H--HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          279 CCKILLTTRLQQ-V--CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       279 ~~~iivTtr~~~-v--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      ...+|++|.... .  .........+.+++.+.++...++......... ...++....|++.++|.+-.+..+
T Consensus       134 ~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~i~~~s~gd~R~ai~~  206 (238)
T d1in4a2         134 PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL  206 (238)
T ss_dssp             CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred             CeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccc-hhhHHHHHHHHHhCCCCHHHHHHH
Confidence            445555555532 2  112233356789999999999999887753322 223567889999999987765443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.52  E-value=3.4e-06  Score=77.45  Aligned_cols=186  Identities=17%  Similarity=0.215  Sum_probs=109.5

Q ss_pred             ccccchhHHHHHHHHHHh----cCC-----ccEEEEEcCCCChHHHHHHHHHhHhhhc----CCCCeEEEEEEcCCCChH
Q 044393          153 SSFETTKSACNQITEALK----KGS-----TKMVGLHGLGGVGKTTLAKFVGNQLRQE----KIFDEVGIATVSQDPDII  219 (513)
Q Consensus       153 ~~~~gr~~~~~~l~~~l~----~~~-----~~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~  219 (513)
                      ..+.||+.+++.|...+.    .+.     ..++.|+||+|+||||+++.+++.+...    .......++.........
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   95 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY   95 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchh
Confidence            346689888888877652    221     1245678999999999999999987532    122345677777777788


Q ss_pred             HHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc-----------ccc----cccCC--CCc
Q 044393          220 NVQSELVKWLGWELK--EKDEEERADRLRLMFSESKGRKILIILDDVWKELD-----------LET----VGIPA--NCC  280 (513)
Q Consensus       220 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----------~~~----l~~~~--~~~  280 (513)
                      .....+...++....  ..........+....... +...++++|++.....           +..    +....  ...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~  174 (287)
T d1w5sa2          96 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE-NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI  174 (287)
T ss_dssp             HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred             hHHHHHhhhcccccccccchHHHHHHHHHHHHHhc-cCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcccce
Confidence            888888877765432  334444444444422323 3778888887743311           111    11111  133


Q ss_pred             EEEEEeCchHHHh---------hcCCcceeecCCCChHhHHHHHHHhcCCC-CCCCchHHHHHHHHHHh
Q 044393          281 KILLTTRLQQVCD---------RMGCDTRIKLDALDQAEGLDLLREHAGID-VADTTLTDVSKRVADEC  339 (513)
Q Consensus       281 ~iivTtr~~~v~~---------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~  339 (513)
                      .+|+++.......         .......+.+++++.++..+++..++... ....-.++..+.|+++.
T Consensus       175 ~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~  243 (287)
T d1w5sa2         175 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY  243 (287)
T ss_dssp             EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred             eEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHH
Confidence            4444443322211         11224678999999999999998776311 11112245667777665

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=6.1e-06  Score=73.82  Aligned_cols=172  Identities=12%  Similarity=0.126  Sum_probs=99.3

Q ss_pred             CccccccccchhHHHHHHHHHHhc-----CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHH
Q 044393          148 IPRFFSSFETTKSACNQITEALKK-----GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQ  222 (513)
Q Consensus       148 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~  222 (513)
                      .|..+..++|.+...+.|..++..     ...+-+.++||+|+||||+|+.+++.....     ..+.+.+....... .
T Consensus         4 RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~-----~~~~~~~~~~~~~~-~   77 (239)
T d1ixsb2           4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-----LRVTSGPAIEKPGD-L   77 (239)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCC-----EEEEETTTCCSHHH-H
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-----eEeccCCccccchh-h
Confidence            455677788999888888877742     235678899999999999999999887533     22333222211111 1


Q ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHhccCCeEEEEEecCCCccc---------ccc---------------cccCCC
Q 044393          223 SELVKWLGWELKEKDEEERADRLRLMFSESKGRKILIILDDVWKELD---------LET---------------VGIPAN  278 (513)
Q Consensus       223 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~---------~~~---------------l~~~~~  278 (513)
                      ...                   +.   .... ...++++|++.....         .+.               .....+
T Consensus        78 ~~~-------------------~~---~~~~-~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~  134 (239)
T d1ixsb2          78 AAI-------------------LA---NSLE-EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP  134 (239)
T ss_dssp             HHH-------------------HH---TTCC-TTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECC
T ss_pred             HHH-------------------HH---hhcc-CCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCC
Confidence            111                   11   1122 334556676643210         000               001112


Q ss_pred             CcEEEEEeCch-HH--HhhcCCcceeecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchHHHHH
Q 044393          279 CCKILLTTRLQ-QV--CDRMGCDTRIKLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLAIKVV  349 (513)
Q Consensus       279 ~~~iivTtr~~-~v--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~  349 (513)
                      ...++.+|-+. ..  .........+.+...+.++...++.+.+..... ....+....|++.+.|.+-.+..+
T Consensus       135 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~~~l~~ia~~s~gd~R~a~~~  207 (239)
T d1ixsb2         135 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRL  207 (239)
T ss_dssp             CCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCC-CBCHHHHHHHHHHTTSSHHHHHHH
T ss_pred             CEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCC-ccchHHHHHHHHHcCCCHHHHHHH
Confidence            34455444432 11  222223467888999999999888877653322 223678899999999987655433

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.2e-05  Score=72.77  Aligned_cols=148  Identities=18%  Similarity=0.162  Sum_probs=85.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+-+.++||+|+|||++|+.+++.....     ...+..+              .+.....+...........   ....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~-----~~~i~~~--------------~l~~~~~g~~~~~l~~~f~---~A~~   95 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP--------------EIMSKLAGESESNLRKAFE---EAEK   95 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCE-----EEEECHH--------------HHTTSCTTHHHHHHHHHHH---HHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCe-----EEEEEch--------------hhcccccccHHHHHHHHHH---HHHh
Confidence            4678999999999999999999976543     1122111              1111111111111121111   2223


Q ss_pred             CCeEEEEEecCCCccc-------------cccc----c--cCCCCcEEEEEeCchHHHh-hc----CCcceeecCCCChH
Q 044393          254 GRKILIILDDVWKELD-------------LETV----G--IPANCCKILLTTRLQQVCD-RM----GCDTRIKLDALDQA  309 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~-------------~~~l----~--~~~~~~~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~  309 (513)
                      .++++|++||+.....             ...+    .  ...++.-||.||....-.+ .+    .....+.+...+.+
T Consensus        96 ~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~  175 (258)
T d1e32a2          96 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT  175 (258)
T ss_dssp             TCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHH
T ss_pred             cCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHH
Confidence            4889999999965311             0111    0  1111556677887654322 11    23478999999999


Q ss_pred             hHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          310 EGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       310 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      +-.++|+...........  .....|++.+.|+--|
T Consensus       176 ~R~~il~~~l~~~~~~~~--~~~~~la~~t~G~s~a  209 (258)
T d1e32a2         176 GRLEILQIHTKNMKLADD--VDLEQVANETHGHVGA  209 (258)
T ss_dssp             HHHHHHHHTTTTSCBCTT--CCHHHHHHHCTTCCHH
T ss_pred             HHHHHhhhhccCcccccc--cchhhhhhcccCCCHH
Confidence            999999988764322222  1246799999997543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=7e-06  Score=73.56  Aligned_cols=146  Identities=23%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-Hhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMF-SES  252 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~l~  252 (513)
                      .+-|.++||+|+|||+||+.+++.....     .+.+..+          .++.    ...+.+..    .++..+ ...
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~-----~~~i~~~----------~l~~----~~~g~~~~----~l~~~f~~a~   98 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVP-----FITASGS----------DFVE----MFVGVGAA----RVRDLFETAK   98 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCC-----EEEEEHH----------HHHH----SCTTHHHH----HHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCC-----EEEEEhH----------Hhhh----ccccHHHH----HHHHHHHHHH
Confidence            3569999999999999999999876532     1222211          1111    11111111    122222 333


Q ss_pred             cCCeEEEEEecCCCcc----------------cccccc---c--CCC-CcEEEEEeCchHHH-hhc----CCcceeecCC
Q 044393          253 KGRKILIILDDVWKEL----------------DLETVG---I--PAN-CCKILLTTRLQQVC-DRM----GCDTRIKLDA  305 (513)
Q Consensus       253 ~~~~~LlVLDd~~~~~----------------~~~~l~---~--~~~-~~~iivTtr~~~v~-~~~----~~~~~~~l~~  305 (513)
                      ...+++|+|||++...                .+..+.   .  ..+ +.-||.||...... ..+    .-...+.+.+
T Consensus        99 ~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~  178 (247)
T d1ixza_          99 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA  178 (247)
T ss_dssp             TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCS
T ss_pred             HcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECC
Confidence            4588999999985310                011111   1  111 33444577654322 222    2336899999


Q ss_pred             CChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCch
Q 044393          306 LDQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPL  344 (513)
Q Consensus       306 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PL  344 (513)
                      .+.++-.++|+..........+  .....+++.|.|..-
T Consensus       179 P~~~eR~~il~~~l~~~~~~~~--~~~~~la~~t~g~s~  215 (247)
T d1ixza_         179 PDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFVG  215 (247)
T ss_dssp             CCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCH
T ss_pred             cCHHHHHHHHHHHhcccCCccc--cCHHHHHHHCCCCCH
Confidence            9999999999988763322221  124667888888644

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=4.1e-06  Score=79.88  Aligned_cols=153  Identities=14%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             cccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc----CCCCeEEEEE-EcCCCChHHHHHHHH
Q 044393          152 FSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE----KIFDEVGIAT-VSQDPDIINVQSELV  226 (513)
Q Consensus       152 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~-~~~~~~~~~~~~~i~  226 (513)
                      ..+.+||+.+++++...|......-+.++|++|+|||+++..++.+....    ...+..+|.- ++.          ++
T Consensus        21 ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~----------l~   90 (387)
T d1qvra2          21 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS----------LL   90 (387)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred             CCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh----------hh
Confidence            34567999999999999976655667889999999999998888766432    2234445432 221          11


Q ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHhcc-CCeEEEEEecCCCcc---------cccccccC---CCCcEEEEEeCchHHHh
Q 044393          227 KWLGWELKEKDEEERADRLRLMFSESK-GRKILIILDDVWKEL---------DLETVGIP---ANCCKILLTTRLQQVCD  293 (513)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~~~~l~~-~~~~LlVLDd~~~~~---------~~~~l~~~---~~~~~iivTtr~~~v~~  293 (513)
                      ..  ....+. -++....+..  .+.. ..+++|++|++....         +...++.|   .+.-++|.+|...+...
T Consensus        91 ag--~~~~g~-~e~r~~~i~~--~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~  165 (387)
T d1qvra2          91 AG--AKYRGE-FEERLKAVIQ--EVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE  165 (387)
T ss_dssp             ---------C-HHHHHHHHHH--HHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH
T ss_pred             cc--cCcchh-HHHHHHHHHH--HhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHH
Confidence            00  011111 1222222222  2322 257999999986542         22222211   22578888888766533


Q ss_pred             h------cCCcceeecCCCChHhHHHHHHHhc
Q 044393          294 R------MGCDTRIKLDALDQAEGLDLLREHA  319 (513)
Q Consensus       294 ~------~~~~~~~~l~~L~~~e~~~lf~~~~  319 (513)
                      .      ....+.+.+.+.+.+++..++....
T Consensus       166 ~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~  197 (387)
T d1qvra2         166 IEKDPALERRFQPVYVDEPTVEETISILRGLK  197 (387)
T ss_dssp             HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred             hcccHHHHHhcccccCCCCcHHHHHHHHHHHH
Confidence            1      1223679999999999999987654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.28  E-value=8.8e-07  Score=78.31  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=25.7

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.+..-.++
T Consensus        29 v~~G--e~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          29 IKDG--EFLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             ECTT--CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             ECCC--CEEEEECCCCChHHHHHHHHHcCCCC
Confidence            3445  89999999999999999999887764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.8e-05  Score=71.17  Aligned_cols=148  Identities=17%  Similarity=0.110  Sum_probs=84.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+.+.++||+|+|||++|+.+++.....     .+.+..+.-.+              ...+.+...+...+.   ....
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~-----~~~i~~~~l~~--------------~~~g~~~~~l~~~f~---~A~~  102 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE--------------MFVGVGASRVRDMFE---QAKK  102 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT--------------SCCCCCHHHHHHHHH---HHHT
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCC-----EEEEEhHHhhh--------------cchhHHHHHHHHHHH---HHHH
Confidence            4668899999999999999999887532     11222221111              112223332222222   2334


Q ss_pred             CCeEEEEEecCCCcc------------c----ccccc------cCCCCcEEEEEeCchHHH-hhc----CCcceeecCCC
Q 044393          254 GRKILIILDDVWKEL------------D----LETVG------IPANCCKILLTTRLQQVC-DRM----GCDTRIKLDAL  306 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~------------~----~~~l~------~~~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L  306 (513)
                      ..+++|++||++...            .    +..+.      ....+.-||.||...... ..+    .-.+.+.+.+.
T Consensus       103 ~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P  182 (256)
T d1lv7a_         103 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP  182 (256)
T ss_dssp             TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCC
T ss_pred             cCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCc
Confidence            588999999984310            0    11111      011145666677764332 212    12478999999


Q ss_pred             ChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          307 DQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      +.++-.++|+..........+  .....+++.+.|+.-+
T Consensus       183 ~~~~R~~il~~~l~~~~~~~~--~~~~~la~~t~G~s~a  219 (256)
T d1lv7a_         183 DVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGA  219 (256)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHH
T ss_pred             CHHHHHHHHHHhccCCCcCcc--cCHHHHHHhCCCCCHH
Confidence            999999999887753322221  2246788888887543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=4.3e-07  Score=80.06  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-.++
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~p   52 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLETI   52 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            89999999999999999999887654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.21  E-value=1.8e-05  Score=69.12  Aligned_cols=156  Identities=18%  Similarity=0.158  Sum_probs=87.2

Q ss_pred             HHHHHHHHhcCC--ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHH
Q 044393          162 CNQITEALKKGS--TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEE  239 (513)
Q Consensus       162 ~~~l~~~l~~~~--~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~  239 (513)
                      ...+..+....+  ...+.|+|++|+|||.|++.+++.....  ...+++++      ..+....+...+...    ...
T Consensus        22 ~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~----~~~   89 (213)
T d1l8qa2          22 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSS------ADDFAQAMVEHLKKG----TIN   89 (213)
T ss_dssp             HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEE------HHHHHHHHHHHHHHT----CHH
T ss_pred             HHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccC--ccceEEec------hHHHHHHHHHHHHcc----chh
Confidence            344444444322  2348899999999999999999998765  33445553      223334443333111    111


Q ss_pred             HHHHHHHHHHHhccCCeEEEEEecCCCcc---cccccc------cCCCCcEEEEEeCch---------HHHhhcCCccee
Q 044393          240 ERADRLRLMFSESKGRKILIILDDVWKEL---DLETVG------IPANCCKILLTTRLQ---------QVCDRMGCDTRI  301 (513)
Q Consensus       240 ~~~~~l~~~~~l~~~~~~LlVLDd~~~~~---~~~~l~------~~~~~~~iivTtr~~---------~v~~~~~~~~~~  301 (513)
                      +....      + . .--+|+|||+....   .|+...      ....|..||+||+..         ++...+.....+
T Consensus        90 ~~~~~------~-~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~  161 (213)
T d1l8qa2          90 EFRNM------Y-K-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV  161 (213)
T ss_dssp             HHHHH------H-H-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred             hHHHH------H-h-hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEE
Confidence            11111      1 1 44599999996542   233211      112288999999963         233444555677


Q ss_pred             ecCCCChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHh
Q 044393          302 KLDALDQAEGLDLLREHAGIDVADTTLTDVSKRVADEC  339 (513)
Q Consensus       302 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~  339 (513)
                      .++ ++.++-.+++++.+...... -.++++.-|++.+
T Consensus       162 ~i~-p~d~~~~~iL~~~a~~rgl~-l~~~v~~yl~~~~  197 (213)
T d1l8qa2         162 EIE-LDNKTRFKIIKEKLKEFNLE-LRKEVIDYLLENT  197 (213)
T ss_dssp             ECC-CCHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHC
T ss_pred             EEC-CCcHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhc
Confidence            786 47777777887777422211 1245555555554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.19  E-value=1.3e-06  Score=77.32  Aligned_cols=30  Identities=30%  Similarity=0.466  Sum_probs=25.6

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.++.-..+
T Consensus        26 i~~G--e~~~liG~sGaGKSTll~~i~gl~~p   55 (240)
T d1g2912          26 VKDG--EFMILLGPSGCGKTTTLRMIAGLEEP   55 (240)
T ss_dssp             EETT--CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EcCC--CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            3445  89999999999999999999887654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=5.3e-06  Score=75.34  Aligned_cols=148  Identities=15%  Similarity=0.137  Sum_probs=84.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEERADRLRLMFSESK  253 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~l~~  253 (513)
                      .+-|.++|++|+|||+||+.+++.....       ++.++    ...+    .    ....+.........+.   ....
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~-------~~~~~----~~~l----~----~~~~~~~~~~l~~~f~---~A~~   98 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----GPEL----L----TMWFGESEANVREIFD---KARQ   98 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCE-------EEEEC----HHHH----H----TSCTTTHHHHHHHHHH---HHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCc-------EEEEE----HHHh----h----hccccchHHHHHHHHH---HHHh
Confidence            3578899999999999999999988643       22222    1111    1    1111222222222222   2233


Q ss_pred             CCeEEEEEecCCCccc----------------cccccc------CCCCcEEEEEeCchHHH-hhc----CCcceeecCCC
Q 044393          254 GRKILIILDDVWKELD----------------LETVGI------PANCCKILLTTRLQQVC-DRM----GCDTRIKLDAL  306 (513)
Q Consensus       254 ~~~~LlVLDd~~~~~~----------------~~~l~~------~~~~~~iivTtr~~~v~-~~~----~~~~~~~l~~L  306 (513)
                      ..+++|+|||++....                ...+..      ...+.-||.||+...-. ..+    .....+++...
T Consensus        99 ~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p  178 (265)
T d1r7ra3          99 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP  178 (265)
T ss_dssp             TCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCC
T ss_pred             cCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecch
Confidence            4889999999864310                111111      11155677787764322 222    23468999999


Q ss_pred             ChHhHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCchH
Q 044393          307 DQAEGLDLLREHAGIDVADTTLTDVSKRVADECKGLPLA  345 (513)
Q Consensus       307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  345 (513)
                      +.++-.++|+..........+  .....|++++.|...+
T Consensus       179 ~~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~g~s~~  215 (265)
T d1r7ra3         179 DEKSRVAILKANLRKSPVAKD--VDLEFLAKMTNGFSGA  215 (265)
T ss_dssp             CCHHHHHHHHHHTTCC----C--CCCHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHhccCCchhh--hhHHHHHhcCCCCCHH
Confidence            999999999887753221111  1236788899887654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.17  E-value=2e-06  Score=75.60  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-..+
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~~p   57 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLDKP   57 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCcchhhHhccCCCCC
Confidence            89999999999999999999886654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=2.9e-06  Score=75.01  Aligned_cols=26  Identities=35%  Similarity=0.532  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.++.-.++
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~p   57 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLERP   57 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccc
Confidence            89999999999999999999887654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.13  E-value=1.5e-06  Score=76.94  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+..-..+
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcCC
Confidence            89999999999999999999887654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.08  E-value=7.6e-06  Score=71.65  Aligned_cols=118  Identities=20%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC---CCCe----------EEEEEEcCCCC------hHHH--------------
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK---IFDE----------VGIATVSQDPD------IINV--------------  221 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~---~f~~----------~~wv~~~~~~~------~~~~--------------  221 (513)
                      .+++|+|++|+|||||++.+..-..+..   .|+.          .-...+.|++.      +.+-              
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~  106 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccHHH
Confidence            8999999999999999999988765420   0110          01223333332      2211              


Q ss_pred             -HHHHHHHhCCCCC------CCCH-HHHHHHHHHHHHhccCCeEEEEEecCCCccccccc------ccC---CCCcEEEE
Q 044393          222 -QSELVKWLGWELK------EKDE-EERADRLRLMFSESKGRKILIILDDVWKELDLETV------GIP---ANCCKILL  284 (513)
Q Consensus       222 -~~~i~~~l~~~~~------~~~~-~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l------~~~---~~~~~iiv  284 (513)
                       ..++++.++....      ..+- ....-.+..  .+.. ++-+|+||++....|...-      ...   ..|..||+
T Consensus       107 ~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAr--aL~~-~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~  183 (229)
T d3d31a2         107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALAR--ALVT-NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH  183 (229)
T ss_dssp             HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHH--HTTS-CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHhcchhhHhCChhhCCHHHhcchhhhh--hhhc-cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence             1223333333211      0111 111222222  4554 7779999999998774221      111   12889999


Q ss_pred             EeCchHHHhhc
Q 044393          285 TTRLQQVCDRM  295 (513)
Q Consensus       285 Ttr~~~v~~~~  295 (513)
                      +||+...+..+
T Consensus       184 vtHd~~~~~~~  194 (229)
T d3d31a2         184 ITHDQTEARIM  194 (229)
T ss_dssp             EESCHHHHHHH
T ss_pred             EcCCHHHHHHh
Confidence            99998776665

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4.4e-06  Score=74.21  Aligned_cols=30  Identities=33%  Similarity=0.651  Sum_probs=25.7

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  ..++|+|++|+|||||++.+.+-..+
T Consensus        26 i~~G--e~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          26 IKQG--EVIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             EETT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            3445  89999999999999999999887654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.02  E-value=1.3e-06  Score=76.99  Aligned_cols=26  Identities=19%  Similarity=0.395  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+||+|+|||||++.+++-.++
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCC
Confidence            58899999999999999999987764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.01  E-value=0.0002  Score=63.68  Aligned_cols=27  Identities=30%  Similarity=0.208  Sum_probs=23.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+-|.++||+|+|||++|+.+++....
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~   66 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNF   66 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccc
Confidence            456889999999999999999987653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=5.8e-06  Score=73.32  Aligned_cols=31  Identities=29%  Similarity=0.636  Sum_probs=26.3

Q ss_pred             HHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          168 ALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       168 ~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+.++  .+++|+|++|+|||||.+.+.....+
T Consensus        24 ~v~~G--ei~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          24 EIEEG--EIFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EECTT--CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            33455  89999999999999999999887764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.98  E-value=4.1e-06  Score=74.58  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=25.5

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.+..-..+
T Consensus        25 i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          25 AQPN--SIIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             ECTT--EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EcCC--CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            3445  89999999999999999999887654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.97  E-value=3.8e-06  Score=74.73  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=28.4

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+.++  .+++|+|++|+|||||++.+..-.++
T Consensus        23 ~~vs~~i~~G--ei~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          23 KGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             EEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             eeeeEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            3333344456  89999999999999999999887754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.88  E-value=9.2e-06  Score=72.90  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=28.5

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+..+  .+++|+|++|+|||||++.+....++
T Consensus        21 ~~vs~~v~~G--ei~~liG~nGaGKSTLl~~i~Gl~~p   56 (254)
T d1g6ha_          21 DGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKA   56 (254)
T ss_dssp             EEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             cceEEEECCC--CEEEEECCCCCcHHHHHHHHHCCCcC
Confidence            3333344455  89999999999999999999988764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.4e-05  Score=72.66  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=24.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+++|+|++|+|||||++.+++...+
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCcC
Confidence            89999999999999999999987765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.83  E-value=9.4e-06  Score=70.09  Aligned_cols=30  Identities=43%  Similarity=0.775  Sum_probs=25.9

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||.+.+++..++
T Consensus        24 i~~G--ei~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          24 IEKG--NVVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             EETT--CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EcCC--CEEEEECCCCChHHHHHHHHhccccc
Confidence            3455  89999999999999999999987754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.82  E-value=1.4e-05  Score=71.45  Aligned_cols=30  Identities=33%  Similarity=0.511  Sum_probs=25.5

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..+  .+++|+|++|+|||||++.+..-..+
T Consensus        38 i~~G--e~iaivG~sGsGKSTLl~ll~gl~~p   67 (253)
T d3b60a1          38 IPAG--KTVALVGRSGSGKSTIASLITRFYDI   67 (253)
T ss_dssp             ECTT--CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             EcCC--CEEEEECCCCChHHHHHHHHhcccCC
Confidence            3445  89999999999999999999887654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.82  E-value=1.8e-05  Score=70.92  Aligned_cols=30  Identities=20%  Similarity=0.439  Sum_probs=25.6

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.+..-.+.
T Consensus        25 i~~G--Ei~~iiG~sGsGKSTLl~~i~Gl~~p   54 (258)
T d1b0ua_          25 ARAG--DVISIIGSSGSGKSTFLRCINFLEKP   54 (258)
T ss_dssp             ECTT--CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EcCC--CEEEEECCCCCcHHHHHHHHHcCccC
Confidence            4455  89999999999999999999886653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=7.4e-06  Score=72.47  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC--CCCe------------EEEEEEcCCC-------------------ChHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK--IFDE------------VGIATVSQDP-------------------DIINV  221 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~--~f~~------------~~wv~~~~~~-------------------~~~~~  221 (513)
                      .+++|+|++|+|||||.+.+..-...++  .|+.            ....++++..                   ...+.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  105 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL  105 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHHHH
Confidence            8999999999999999999987433210  0000            0011222211                   11233


Q ss_pred             HHHHHHHhCCCCC------CCCH--HHHHHHHHHHHHhc---cCCeEEEEEecCCCcccccccc--------cCCCCcEE
Q 044393          222 QSELVKWLGWELK------EKDE--EERADRLRLMFSES---KGRKILIILDDVWKELDLETVG--------IPANCCKI  282 (513)
Q Consensus       222 ~~~i~~~l~~~~~------~~~~--~~~~~~l~~~~~l~---~~~~~LlVLDd~~~~~~~~~l~--------~~~~~~~i  282 (513)
                      ..+++..++....      ..+.  .++....+.++...   ...+-+|+||++.+..|.....        ....|..|
T Consensus       106 ~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~ti  185 (231)
T d1l7vc_         106 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAI  185 (231)
T ss_dssp             HHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            4455555544321      1222  22222333222211   1245799999999987743321        11238899


Q ss_pred             EEEeCchHHHhhc
Q 044393          283 LLTTRLQQVCDRM  295 (513)
Q Consensus       283 ivTtr~~~v~~~~  295 (513)
                      |++||+-+.+..+
T Consensus       186 i~vtHdl~~~~~~  198 (231)
T d1l7vc_         186 VMSSHDLNHTLRH  198 (231)
T ss_dssp             EECCCCHHHHHHH
T ss_pred             EEEeCCHHHHHHH
Confidence            9999997655444

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.76  E-value=4.3e-06  Score=74.88  Aligned_cols=36  Identities=28%  Similarity=0.493  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          163 NQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       163 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+...+.++  .+++|+|++|+|||||++.+.+-...
T Consensus        35 ~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p   70 (255)
T d2hyda1          35 KDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDV   70 (255)
T ss_dssp             EEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             eceEEEEcCC--CEEEEECCCCCcHHHHHHHHHhcCCc
Confidence            3333334455  89999999999999999999776654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.5e-06  Score=73.24  Aligned_cols=30  Identities=33%  Similarity=0.581  Sum_probs=25.7

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.++  .+++|+|++|+|||||++.+.+-.++
T Consensus        37 i~~G--e~vaivG~sGsGKSTLl~li~gl~~p   66 (251)
T d1jj7a_          37 LRPG--EVTALVGPNGSGKSTVAALLQNLYQP   66 (251)
T ss_dssp             ECTT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EcCC--CEEEEECCCCCcHHHHHHHHhcccCC
Confidence            3455  89999999999999999999887654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=0.00028  Score=60.38  Aligned_cols=126  Identities=12%  Similarity=0.099  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhc--CCCCeEEEEEEcC-CCChHHHHHHHHHHhCCCCCCCC
Q 044393          161 ACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE--KIFDEVGIATVSQ-DPDIINVQSELVKWLGWELKEKD  237 (513)
Q Consensus       161 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~  237 (513)
                      .++.+..++.++..+.+.++|++|+||||+|..+.+.....  .|.|. .++.... ...+ +..+++.+.+...     
T Consensus         2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~-~~i~~~~~~I~I-d~IR~i~~~~~~~-----   74 (198)
T d2gnoa2           2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGI-DDIRTIKDFLNYS-----   74 (198)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCH-HHHHHHHHHHTSC-----
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCE-EEEeCCcCCCCH-HHHHHHHHHHhhC-----
Confidence            35667777778888999999999999999999999876542  33333 3332111 1112 2222333333221     


Q ss_pred             HHHHHHHHHHHHHhccCCeEEEEEecCCCccc------ccccccCCCCcEEEEEeCchH-HHhhcCC-cceeecCCC
Q 044393          238 EEERADRLRLMFSESKGRKILIILDDVWKELD------LETVGIPANCCKILLTTRLQQ-VCDRMGC-DTRIKLDAL  306 (513)
Q Consensus       238 ~~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~------~~~l~~~~~~~~iivTtr~~~-v~~~~~~-~~~~~l~~L  306 (513)
                                   -..+++-++|+|++.....      +..+..|.+++.+|++|.+.. +...+.. ...+.+.+.
T Consensus        75 -------------~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p  138 (198)
T d2gnoa2          75 -------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVP  138 (198)
T ss_dssp             -------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             -------------cccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCc
Confidence                         1124666999999876532      222334455777777777643 3333221 245666543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=7.7e-05  Score=62.20  Aligned_cols=28  Identities=29%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .++++|+|++|+|||||++.+.+.+..+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            4799999999999999999999987765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=0.0001  Score=62.38  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.|+|.|++|+||||||+.++....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999999764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00079  Score=57.69  Aligned_cols=59  Identities=17%  Similarity=0.174  Sum_probs=40.3

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCCh--HHHHHHHHHHhCCCC
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDI--INVQSELVKWLGWEL  233 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~  233 (513)
                      ..+.+|.++|++|+||||.+.+++.....++  ..+ .+.....+..  .+-++...+.++.+.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g--~kV-~lit~Dt~R~gA~eQL~~~a~~l~v~~   67 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQG--KSV-MLAAGDTFRAAAVEQLQVWGQRNNIPV   67 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTT--CCE-EEECCCTTCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CcE-EEEecccccccchhhhhhhhhhcCCcc
Confidence            3457999999999999998888888776432  223 3333344444  456677777777664

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0027  Score=58.39  Aligned_cols=44  Identities=27%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             cchhHHHHHHHHHHh-------c-C-CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          156 ETTKSACNQITEALK-------K-G-STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       156 ~gr~~~~~~l~~~l~-------~-~-~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +|.+..++.+...+.       + + ...++.++||+|+|||.||+.++....
T Consensus        25 iGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          25 FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhcc
Confidence            466777777766552       1 1 234788999999999999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00012  Score=60.47  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.|.|+||+|+||||+|+.++..+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5688999999999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.0012  Score=56.73  Aligned_cols=60  Identities=18%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCCC
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP-DIINVQSELVKWLGWEL  233 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~  233 (513)
                      ..+.+|.++|++|+||||.+.+++.++..++  ..+..++..... ...+.++...+.++.+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~--~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~   69 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADTFRAAAIEQLKIWGERVGATV   69 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CceEEEeecccccchhHHHHHHhhhcCccc
Confidence            3457999999999999998888887775442  345566655332 33456777777777654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.02  E-value=0.00032  Score=58.81  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|.|+|++|+||||+|+.++..+...
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3789999999999999999999988764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.01  E-value=0.00017  Score=60.52  Aligned_cols=25  Identities=40%  Similarity=0.499  Sum_probs=22.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .|+|+|++|+|||||++.+++....
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4899999999999999999998865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.00033  Score=59.70  Aligned_cols=32  Identities=38%  Similarity=0.610  Sum_probs=26.6

Q ss_pred             hcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          170 KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       170 ~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ...+.-+|+|.|++|+||||||+.+.......
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            34444689999999999999999999887764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00026  Score=59.60  Aligned_cols=27  Identities=41%  Similarity=0.474  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      +.|.|+|++|+|||||++.++..+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            568999999999999999999988764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.97  E-value=0.00016  Score=60.25  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +.|.|+|++|+||||+|+.++..+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            5688999999999999999998764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.96  E-value=0.00021  Score=61.14  Aligned_cols=29  Identities=24%  Similarity=0.221  Sum_probs=25.0

Q ss_pred             cCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          171 KGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       171 ~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..+.+|.|+|++|+||||+|+.++....
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34567999999999999999999998764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.95  E-value=0.00019  Score=59.74  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++|.|.|++|+||||+|+.+.....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999987654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.95  E-value=0.003  Score=53.93  Aligned_cols=59  Identities=24%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC-CCChHHHHHHHHHHhCCCC
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ-DPDIINVQSELVKWLGWEL  233 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~  233 (513)
                      +..+|.++|+.|+||||.+.+++......+  ..+..++... .....+.++...+.++.+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g--~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~   64 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG--KKVMFCAGDTFRAAGGTQLSEWGKRLSIPV   64 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEECCCCSSTTHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEeccccccchhhHhhcccccCceE
Confidence            458999999999999998888888776442  3456666553 3355677888888887764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.93  E-value=0.00022  Score=58.15  Aligned_cols=24  Identities=29%  Similarity=0.253  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+|.|.|++|+||||||+.+....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            578899999999999999886543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.89  E-value=0.0029  Score=54.08  Aligned_cols=58  Identities=19%  Similarity=0.076  Sum_probs=39.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCCC
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP-DIINVQSELVKWLGWEL  233 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~  233 (513)
                      .+++.++|++|+||||.+.+++.....+ .. .+..++..... ...+.++...+.++.+.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~-g~-kV~lit~Dt~R~gA~eQL~~~a~~l~v~~   68 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GR-RPLLVAADTQRPAAREQLRLLGEKVGVPV   68 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHT-TC-CEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHC-CC-cEEEEecccccchHHHHHHHHHHhcCCcc
Confidence            3789999999999999888888877654 22 34455443222 23456667777777653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.86  E-value=0.0004  Score=57.59  Aligned_cols=28  Identities=25%  Similarity=0.146  Sum_probs=25.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEK  202 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~  202 (513)
                      ++++|+|..|+|||||+..+...+..++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999988763

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00033  Score=58.28  Aligned_cols=27  Identities=33%  Similarity=0.503  Sum_probs=24.2

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..+++.|.|++|+||||+|+.+...+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            458999999999999999999998774

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.81  E-value=0.0021  Score=55.01  Aligned_cols=59  Identities=20%  Similarity=0.284  Sum_probs=36.2

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCCC
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP-DIINVQSELVKWLGWEL  233 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~  233 (513)
                      .+.+|.++||.|+||||.+.+++.....++ . .+..++..... ...+.++...+.++.+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g-~-kV~lit~Dt~R~ga~eQL~~~a~~l~v~~   70 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKG-F-KVGLVGADVYRPAALEQLQQLGQQIGVPV   70 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTT-C-CEEEEECCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCC-C-ceEEEEeeccccchhHHHHHhccccCcce
Confidence            458999999999999998888887776442 2 35555544322 23455666677777654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.0042  Score=55.28  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=58.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRL  247 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~  247 (513)
                      .+++-|.|++|+||||||.+++......  -..++|+.....++...     ++.++...+      ....++..+.+..
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~--g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~~~  132 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIADM  132 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHHT--TCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhcC--CCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHHHH
Confidence            3899999999999999998888766554  34578888877777653     555665432      2344555555554


Q ss_pred             HHHhccCCeEEEEEecCCC
Q 044393          248 MFSESKGRKILIILDDVWK  266 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~~~  266 (513)
                      +  ...++.-|+|+|.+..
T Consensus       133 l--~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         133 L--IRSGALDIVVIDSVAA  149 (269)
T ss_dssp             H--HHTTCEEEEEEECSTT
T ss_pred             H--HhcCCCCEEEEecccc
Confidence            2  2345678999998754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.76  E-value=0.00045  Score=57.59  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++|.|.|++|+||||+|+.+.....
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            7899999999999999999987654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.76  E-value=0.00039  Score=57.90  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=23.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ...|.|.|++|+||||+++.++..+.
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999998764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00041  Score=59.33  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=24.7

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..++|.|.|++|+||||+|+.++..+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3468999999999999999999988763

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.71  E-value=0.00042  Score=58.40  Aligned_cols=27  Identities=41%  Similarity=0.626  Sum_probs=24.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ++|+|.|++|+||||+++.+...+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            689999999999999999999988654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.71  E-value=0.00042  Score=57.79  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++|.|.|++|+||||+|+.+++.+..
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            78999999999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00047  Score=58.63  Aligned_cols=28  Identities=36%  Similarity=0.364  Sum_probs=24.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|.++|++|+||||+|+.++..+...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~   46 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCH   46 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3688999999999999999999887654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.67  E-value=0.00036  Score=57.89  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=21.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .|.++|++|+||||+++.++..+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3567799999999999999988864

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.0033  Score=55.87  Aligned_cols=95  Identities=18%  Similarity=0.228  Sum_probs=58.4

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCC-ChHHHHHHHHHHhCCC-------------CCCCC
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDP-DIINVQSELVKWLGWE-------------LKEKD  237 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------------~~~~~  237 (513)
                      +..+.++|.|.+|+|||+|+..+.+..... +-+..+++-+.+.. ...++..++.+.--..             ....+
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~~~~~-~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~  144 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP  144 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHHHHhh-CCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCCC
Confidence            334899999999999999999998775332 23556777777654 3455666665531100             01122


Q ss_pred             HHH------HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          238 EEE------RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       238 ~~~------~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ...      ..-.+.+++.-..|+.+|+++||+...
T Consensus       145 ~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr~  180 (276)
T d2jdid3         145 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF  180 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhHH
Confidence            211      223344544434479999999998544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.62  E-value=0.00049  Score=56.79  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             EEEEcCCCChHHHHHHHHHhHhhh
Q 044393          177 VGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       177 i~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      |.|+||+|+||||+++.++..+..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            778899999999999999999853

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.61  E-value=0.0046  Score=55.07  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=58.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRL  247 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~  247 (513)
                      .+++-|.|++|+||||||.+++.......  ..++|+.....++..     +++.++...+      ..+.++..+.+..
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~  129 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL  129 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHHH
Confidence            37999999999999999999888765442  347788877777763     5677776533      2344555555554


Q ss_pred             HHHhccCCeEEEEEecCCC
Q 044393          248 MFSESKGRKILIILDDVWK  266 (513)
Q Consensus       248 ~~~l~~~~~~LlVLDd~~~  266 (513)
                      +  ...+..-|+|+|-+..
T Consensus       130 l--~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         130 L--VRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             H--HTTTCCSEEEEECTTT
T ss_pred             H--HhcCCCcEEEEecccc
Confidence            2  2334566999998754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0045  Score=54.04  Aligned_cols=105  Identities=12%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh--hc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR--QE-----------KIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEE  240 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~--~~-----------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~  240 (513)
                      .+++.|+||+..||||+++.+.-..-  .-           ..|+. ++..+....++..-.....             .
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~-I~~~~~~~d~~~~~~S~F~-------------~  106 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR-IFTRVGAADDLASGRSTFM-------------V  106 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE-EEEEEC-----------CH-------------H
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchh-heeEEccCcccccchhHHH-------------H
Confidence            37899999999999999998865432  11           12222 3334433333222111111             1


Q ss_pred             HHHHHHHHHHhccCCeEEEEEecCCCccccc-------c-c--ccCCCCcEEEEEeCchHHHh
Q 044393          241 RADRLRLMFSESKGRKILIILDDVWKELDLE-------T-V--GIPANCCKILLTTRLQQVCD  293 (513)
Q Consensus       241 ~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~-------~-l--~~~~~~~~iivTtr~~~v~~  293 (513)
                      -...+..++.... ++.|+++|++-...+..       . +  .....++.+++|||...+..
T Consensus       107 E~~~~~~il~~~~-~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         107 EMTETANILHNAT-EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHCC-TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHHhcc-cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            1222333334444 78899999995543211       1 1  11223679999999876543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.55  E-value=0.00051  Score=57.19  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.|.++|++|+||||+++.++..+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45678899999999999999998863

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.0023  Score=58.80  Aligned_cols=43  Identities=28%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             cchhHHHHHHHHHHh-------c-CC-ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          156 ETTKSACNQITEALK-------K-GS-TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       156 ~gr~~~~~~l~~~l~-------~-~~-~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      +|.+..++.+...+.       + .. ..++.++||.|+|||.||+.++..+
T Consensus        26 ~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          26 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            355666666655442       1 11 2378899999999999999999887

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0007  Score=57.63  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||+|+.++..+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00072  Score=58.87  Aligned_cols=26  Identities=31%  Similarity=0.553  Sum_probs=24.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++|+|.||+|+||||+|+.+++++.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            37999999999999999999999986

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0024  Score=57.21  Aligned_cols=100  Identities=12%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             HHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCC----CCCCCCH
Q 044393          164 QITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGW----ELKEKDE  238 (513)
Q Consensus       164 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~  238 (513)
                      .+++.+.. +..+.++|.|+.|+|||+|+..+.+.......-...+...+.+...   -..++......    .....+.
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~iger~~---ev~~~~~~~~~~vv~~t~d~~~  108 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE---EVTEMQRLVKGEVVASTFDEPA  108 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEEECHH---HHHHHHHHCSSEEEEEETTSCH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeeceeHH---HHHhHHhhcceEEEeccCCCch
Confidence            34555532 3449999999999999999999998776542222222333343322   22222222211    1111221


Q ss_pred             ------HHHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          239 ------EERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       239 ------~~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                            ......+.+++.- .|+.+||++||+...
T Consensus       109 ~~r~~~~~~a~~iAEyfrd-~G~dVLli~Dsltr~  142 (289)
T d1xpua3         109 SRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRL  142 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TTCEEEEEESCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH-hccCceeecCcHHHH
Confidence                  1223334444443 469999999998554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.46  E-value=0.0013  Score=59.06  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +..|.++||+|+||||||+.+++....
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            457889999999999999999998754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0008  Score=56.10  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhH
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .+.+|.++|++|+||||+|+.+...
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3579999999999999999988654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.39  E-value=0.00076  Score=57.16  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=23.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +..|.|.||+|+||||+|+.+++.+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            45788999999999999999988874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=0.00088  Score=57.69  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      -+|.++|.+|+||||||++++......
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~   29 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFI   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            579999999999999999999877643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0063  Score=54.02  Aligned_cols=83  Identities=22%  Similarity=0.253  Sum_probs=55.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELK------EKDEEERADRLRLM  248 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~  248 (513)
                      +++-|+|++|+|||||+.+++......  -..++|+.....++..     .++.++...+      ..+.++..+.+..+
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~~--g~~~vyidtE~~~~~~-----~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l  127 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL  127 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEEccccccCHH-----HHHHhCCCHHHEEEecCCCHHHHHHHHHHH
Confidence            799999999999999999998877654  2346788777776653     3566666432      23345555555442


Q ss_pred             HHhccCCeEEEEEecCCC
Q 044393          249 FSESKGRKILIILDDVWK  266 (513)
Q Consensus       249 ~~l~~~~~~LlVLDd~~~  266 (513)
                        ...++.-|+|+|-+..
T Consensus       128 --~~~~~~~liViDSi~a  143 (263)
T d1u94a1         128 --ARSGAVDVIVVDSVAA  143 (263)
T ss_dssp             --HHHTCCSEEEEECGGG
T ss_pred             --HhcCCCCEEEEECccc
Confidence              2223556889998743

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.0015  Score=60.12  Aligned_cols=44  Identities=25%  Similarity=0.279  Sum_probs=31.9

Q ss_pred             cchhHHHHHHHHHHh--------------cCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          156 ETTKSACNQITEALK--------------KGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       156 ~gr~~~~~~l~~~l~--------------~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +|.+...+.+...+.              .....-+.++||+|+|||.||+.+++...
T Consensus        17 iGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          17 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc
Confidence            566666666655441              01236678999999999999999998764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.32  E-value=0.0011  Score=55.85  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ++|.|.|++|+||||+++.+...+..+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999988754

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.31  E-value=0.0074  Score=52.85  Aligned_cols=38  Identities=16%  Similarity=0.140  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ  214 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~  214 (513)
                      .++.|.|++|+|||+|+.+++......  ...+.|++...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~~--~~~~~~is~e~   64 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEE   64 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHh--ccccceeeccC
Confidence            799999999999999999998886543  45566766543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.29  E-value=0.0029  Score=58.17  Aligned_cols=41  Identities=32%  Similarity=0.554  Sum_probs=31.2

Q ss_pred             HHHHHHHHH--hcCCccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          161 ACNQITEAL--KKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       161 ~~~~l~~~l--~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ....+...+  ..++..+|+|+|++|+|||||...+.......
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~   78 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA   78 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhc
Confidence            344455444  33556899999999999999999999876654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0011  Score=57.24  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      -+|+|.|+.|+||||||+.+...+..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhch
Confidence            58999999999999999999888754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.23  E-value=0.0022  Score=58.52  Aligned_cols=30  Identities=33%  Similarity=0.498  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIF  204 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f  204 (513)
                      .++.++|++|+|||.||+.+++....+..|
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~  153 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKY  153 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCC
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCe
Confidence            456678999999999999999987644334

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.20  E-value=0.0013  Score=55.16  Aligned_cols=24  Identities=33%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|.|.|++|+||||+|+.++..+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0038  Score=57.46  Aligned_cols=40  Identities=33%  Similarity=0.475  Sum_probs=30.9

Q ss_pred             HHHHHHHh--cCCccEEEEEcCCCChHHHHHHHHHhHhhhcC
Q 044393          163 NQITEALK--KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK  202 (513)
Q Consensus       163 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~  202 (513)
                      .++...+.  .++..+|+|+|++|+|||||...+......++
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g   82 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG   82 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcC
Confidence            34444442  35578999999999999999999998887653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.15  E-value=0.0014  Score=55.06  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|+|+||+|+|||||++.+.....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            6899999999999999999987764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.14  E-value=0.0015  Score=55.47  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|.|++|+||||+|+.++..+.
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            8999999999999999999988653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.11  E-value=0.0015  Score=54.85  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|.|.|++|+||||+|+.++..+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999998874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.11  E-value=0.0015  Score=56.86  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      -+|+|-||+|+||||+|+.++..+.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999999886

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0013  Score=55.70  Aligned_cols=25  Identities=36%  Similarity=0.355  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .|+|+||+|+|||||++.+......
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4789999999999999999887654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.03  E-value=0.004  Score=53.39  Aligned_cols=30  Identities=33%  Similarity=0.358  Sum_probs=25.5

Q ss_pred             cCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          171 KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       171 ~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .....+|-+.|.+|+||||||+.+...+..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~   50 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVR   50 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            444589999999999999999999887644

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0017  Score=54.36  Aligned_cols=24  Identities=38%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|.|.|++|+||||+|+.++..+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999998874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0014  Score=55.31  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.|+|+||+|+|||||++.++.....
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCc
Confidence            45889999999999999999887654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.01  E-value=0.002  Score=54.54  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .-.|.|.||+|+||||+|+.++..+.
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHC
Confidence            35788899999999999999998753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0053  Score=55.17  Aligned_cols=50  Identities=26%  Similarity=0.414  Sum_probs=36.8

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS  213 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~  213 (513)
                      +..+...+..+..++|.+.|-||+||||++..++..+...+  ..+..+...
T Consensus         8 ~~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G--~rVllvD~D   57 (279)
T d1ihua2           8 LSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMG--FDVHLTTSD   57 (279)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred             HHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCC
Confidence            45566667677779999999999999999998888776543  234444444

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0023  Score=53.61  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|.|++|+||||+|+.++..+.
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567889999999999999998764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.88  E-value=0.013  Score=50.64  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=56.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh--hc-----------CCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR--QE-----------KIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDEEER  241 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~--~~-----------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  241 (513)
                      +++.|+||+..||||+++.+.-..-  .-           ..|+. ++..+....++..-.             ..-...
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~-I~~~~~~~d~~~~~~-------------StF~~e  101 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-IYTRIGASDDLAGGK-------------STFMVE  101 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE-EEEECCC------CC-------------SHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecce-EEEEECCCccccCCc-------------cHHHHh
Confidence            5889999999999999998864431  11           12332 333333322221111             111122


Q ss_pred             HHHHHHHHHhccCCeEEEEEecCCCccc-----------ccccccCCCCcEEEEEeCchHHHh
Q 044393          242 ADRLRLMFSESKGRKILIILDDVWKELD-----------LETVGIPANCCKILLTTRLQQVCD  293 (513)
Q Consensus       242 ~~~l~~~~~l~~~~~~LlVLDd~~~~~~-----------~~~l~~~~~~~~iivTtr~~~v~~  293 (513)
                      ...+..++... +++.|+++|++-...+           ++.+.  ..++.+++|||..++..
T Consensus       102 l~~~~~il~~~-~~~sLvliDE~~~gT~~~eg~ala~aile~L~--~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         102 MEEVALILKEA-TENSLVLLDEVGRGTSSLDGVAIATAVAEALH--ERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHC-CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH--HHTCEEEEECCCHHHHT
T ss_pred             HHHHHHHhccC-CCCcEEeecccccCcchhhhcchHHHHHHHHh--hcCcceEEeeechhhhh
Confidence            23333333444 4889999999965433           11111  12789999999887754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.85  E-value=0.0026  Score=53.71  Aligned_cols=25  Identities=28%  Similarity=0.223  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ..|.|+|++|+||||+|+.++..+.
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3556899999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0024  Score=53.29  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|.|.|++|+||||+|+.++....
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0026  Score=53.11  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.|+|+||+|+|||||++.+......
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            67999999999999999999876543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0035  Score=53.64  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .+|.|+||+|+|||||.+.+.....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            7899999999999999999988754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.50  E-value=0.0042  Score=54.51  Aligned_cols=25  Identities=40%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ||+|+|+.|+|||||...+.+....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~   26 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLED   26 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Confidence            7899999999999999999876643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.44  E-value=0.0039  Score=57.84  Aligned_cols=48  Identities=19%  Similarity=0.116  Sum_probs=34.5

Q ss_pred             ccccccchhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          151 FFSSFETTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       151 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+...+|.+.....|.-........-|.|.|++|+||||||+.+..-+
T Consensus         5 ~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             ChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhC
Confidence            456678888777655544432222568999999999999999998654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.039  Score=47.87  Aligned_cols=45  Identities=11%  Similarity=-0.060  Sum_probs=31.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcC----CCCeEEEEEEcCCCCh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEK----IFDEVGIATVSQDPDI  218 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~  218 (513)
                      .+++.|.|++|+|||||+.+++.......    .-...+|+.....+..
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   82 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP   82 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCG
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHH
Confidence            37999999999999999999876543221    1235667766655543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.01  Score=53.69  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=33.0

Q ss_pred             cCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC
Q 044393          171 KGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD  217 (513)
Q Consensus       171 ~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~  217 (513)
                      +..+++|.+.|-||+||||++..++..+..++  ..+..+......+
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G--~rVLlvD~Dp~~~   49 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQG--KRVLLVSTDPASN   49 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence            34468999999999999999999988887653  2355555554333

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.022  Score=48.81  Aligned_cols=28  Identities=29%  Similarity=0.457  Sum_probs=24.9

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ...|+|-|+-|+||||+++.+...+..+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            4789999999999999999999887643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0089  Score=51.16  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=24.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..|+|-|+.|+||||+++.+.+.+...
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            789999999999999999999988765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.11  Score=45.04  Aligned_cols=44  Identities=11%  Similarity=-0.048  Sum_probs=32.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh----cCCCCeEEEEEEcCCCCh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ----EKIFDEVGIATVSQDPDI  218 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~  218 (513)
                      +++.|.|++|+|||+||.+++.....    ...+..+.|+.....+..
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP   85 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHH
Confidence            79999999999999999999875432    223455667766655543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.34  E-value=0.0092  Score=53.26  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS  213 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~  213 (513)
                      +.|+|+|-||+||||+|..++..+...+ + .+.-+...
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G-~-rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG-K-TIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTT-C-CEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCC-C-cEEEEecC
Confidence            5799999999999999999999887652 3 45555554

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.34  E-value=0.0041  Score=52.48  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVG  195 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~  195 (513)
                      +-+|+|+|+.|+||||+|..+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999998773

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.01  Score=53.79  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=24.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +-+|+|.|+.|+||||+|+.+...+..
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~  106 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSR  106 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhh
Confidence            469999999999999999999888764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.24  E-value=0.0038  Score=52.90  Aligned_cols=26  Identities=27%  Similarity=0.181  Sum_probs=22.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      +-+|+|-|+.|+||||+++.+.+...
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999987653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.19  E-value=0.0055  Score=49.60  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|.|+|++|+|||||+..+.+..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.16  E-value=0.021  Score=52.18  Aligned_cols=115  Identities=21%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChH-HHHHHHHHHhCCCCCCCCHHH
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDII-NVQSELVKWLGWELKEKDEEE  240 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~  240 (513)
                      ..-+...+..+  .-|.|.|+.|+||||+++.+.........     .+++.....+. .....+.     .........
T Consensus       156 ~~~l~~~v~~~--~nili~G~tgSGKTT~l~al~~~i~~~~r-----ivtiEd~~El~l~~~~~~~-----~~~~~~~~~  223 (323)
T d1g6oa_         156 ISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEER-----IISIEDTEEIVFKHHKNYT-----QLFFGGNIT  223 (323)
T ss_dssp             HHHHHHHHHHT--CCEEEEESTTSSHHHHHHHHGGGSCTTCC-----EEEEESSCCCCCSSCSSEE-----EEECBTTBC
T ss_pred             HHHHHHHHHhC--CCEEEEeeccccchHHHHHHhhhcccccc-----eeeccchhhhhcccccccc-----eeccccchh
Confidence            34444555555  55899999999999999999887654311     12222221110 0000000     000001112


Q ss_pred             HHHHHHHHHHhccCCeEEEEEecCCCcccccccccCCCCc-EEEEEeCchHH
Q 044393          241 RADRLRLMFSESKGRKILIILDDVWKELDLETVGIPANCC-KILLTTRLQQV  291 (513)
Q Consensus       241 ~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~~~~~~~-~iivTtr~~~v  291 (513)
                      ..+.++.  .+.. .+=.+|+.++-..+.+..+.....|. -++.|.|..+.
T Consensus       224 ~~~ll~~--~lR~-~pd~iivgEiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~  272 (323)
T d1g6oa_         224 SADCLKS--CLRM-RPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSS  272 (323)
T ss_dssp             HHHHHHH--HTTS-CCSEEEESCCCSTHHHHHHHHHHTTCSCEEEEECCSSH
T ss_pred             HHHHHHH--Hhcc-CCCcccCCccCchhHHHHHHHHHhcCCcEEEEECCCCH
Confidence            3344554  4444 56678999998777665443333343 37888886543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.13  E-value=0.048  Score=48.46  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=36.5

Q ss_pred             HhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHh
Q 044393          169 LKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWL  229 (513)
Q Consensus       169 l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l  229 (513)
                      +..+  .++.|.|++|+||||++.+++........+. +.++  +-..+...+...++...
T Consensus        32 ~~~G--~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~-v~~~--s~E~~~~~~~~r~~~~~   87 (277)
T d1cr2a_          32 ARGG--EVIMVTSGSGMGKSTFVRQQALQWGTAMGKK-VGLA--MLEESVEETAEDLIGLH   87 (277)
T ss_dssp             BCTT--CEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEE--ESSSCHHHHHHHHHHHH
T ss_pred             CCCC--eEEEEEeCCCCCHHHHHHHHHHhhhhhcccc-eeEe--eeccchhhHHhHHHHHh
Confidence            3445  7999999999999999999987654332232 3333  34455566655555443

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.03  E-value=0.038  Score=48.28  Aligned_cols=46  Identities=17%  Similarity=0.086  Sum_probs=33.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc----CCCCeEEEEEEcCCCChHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE----KIFDEVGIATVSQDPDIIN  220 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~  220 (513)
                      +++.|.|++|+|||||+.+++......    ......+|+......+...
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER   86 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHH
Confidence            799999999999999999998765422    2234566776666655433

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.02  E-value=0.004  Score=55.78  Aligned_cols=28  Identities=21%  Similarity=0.471  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .++|+|.|.+|+||||+++.+.+.+...
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            4799999999999999999998877654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.019  Score=48.92  Aligned_cols=27  Identities=41%  Similarity=0.516  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..|+|-|+.|+||||+++.+...+...
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            689999999999999999999988765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.89  E-value=0.013  Score=48.38  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=27.0

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      +..+..++.+.+ -.|.|+|.+|+|||||+..+.+.
T Consensus         4 ~~~~~~~~~~k~-~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           4 FTRIWRLFNHQE-HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHHTTSC-EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCe-EEEEEECCCCCCHHHHHHHHhcC
Confidence            455666665544 57889999999999999988764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.031  Score=49.82  Aligned_cols=56  Identities=18%  Similarity=0.096  Sum_probs=35.5

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCC-CeEEEEEEcCCCChHHHHHHHHHHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIF-DEVGIATVSQDPDIINVQSELVKWL  229 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l  229 (513)
                      +-+|+|.|+.|+|||||+..+...+...... ..+..++...-+-...-...+.+..
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~   83 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQF   83 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHT
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhc
Confidence            3488999999999999999988776554222 2344555544443344344444443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.82  E-value=0.0077  Score=50.82  Aligned_cols=26  Identities=27%  Similarity=0.426  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ++.+.|+|+|.+|+|||||...+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            34568999999999999999999864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.028  Score=47.89  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.|.|++|+|||||+.+++.....
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            79999999999999999999876543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.76  E-value=0.008  Score=48.97  Aligned_cols=24  Identities=29%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||.+.+.+..
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999987754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.74  E-value=0.013  Score=49.86  Aligned_cols=26  Identities=27%  Similarity=0.613  Sum_probs=23.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .|+|-|+-|+||||+++.+.+.+...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            58999999999999999999988765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.66  E-value=0.014  Score=50.12  Aligned_cols=35  Identities=37%  Similarity=0.654  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          162 CNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       162 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      ++.|...+ .+  +..+++|.+|+|||||...+..+..
T Consensus        86 ~~~L~~~l-~~--kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          86 IEELKEYL-KG--KISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             HHHHHHHH-SS--SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             HhhHHHHh-cC--CeEEEECCCCCCHHHHHHhhcchhh
Confidence            35555655 34  7889999999999999998876543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.59  E-value=0.019  Score=51.68  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQ  214 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~  214 (513)
                      +.|+|.|-||+||||++..++..+...+ + .+.-+....
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G-~-rVLlID~Dp   40 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMG-K-KVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEecCC
Confidence            5788999999999999999988886542 2 355666654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.0098  Score=52.04  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=24.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      ++.|+|-|+-|+||||+++.+...+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            579999999999999999999987654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.55  E-value=0.019  Score=53.37  Aligned_cols=28  Identities=25%  Similarity=0.121  Sum_probs=25.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      .+.+.++||+|+|||++|+.+++.....
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~~  181 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELCGGK  181 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4699999999999999999999988753

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.37  E-value=0.25  Score=43.68  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=52.1

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhHhhhcC-C----C-CeEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCC
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQLRQEK-I----F-DEVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKD  237 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~-~----f-~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~  237 (513)
                      +..+.++|.|.+|+|||+|+..+........ .    - ..++++-+.+... ..++...+...-...       ....+
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~~  145 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA  145 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEEEECCCCC
Confidence            3348999999999999999987776543211 0    1 1234555555443 233444433321111       11122


Q ss_pred             HHH------HHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          238 EEE------RADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       238 ~~~------~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ...      ..-.+.+++.- .|+++|+++||+...
T Consensus       146 ~~~r~~~~~~a~tiAEyfrd-~G~~VLll~Dsltr~  180 (285)
T d2jdia3         146 APLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLSKQ  180 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCEEEEEEETHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCcEEEEEcChHHH
Confidence            211      12234444453 469999999998543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=94.34  E-value=0.038  Score=48.94  Aligned_cols=91  Identities=19%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCC-hHHHHHHHHHHhCCC-------CCCCC------HH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPD-IINVQSELVKWLGWE-------LKEKD------EE  239 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~------~~  239 (513)
                      .+.++|.|.+|+|||+|+..........  -...+++-+.+... ..+...++...-...       ....+      ..
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~~~~~~--~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~  144 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTILNQQGQ--NVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP  144 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTCCTT--TCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred             CceEeeccCCCCChHHHHHHHHhhhccc--CceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHH
Confidence            3789999999999999998765544322  34556666665442 223333332210000       01111      12


Q ss_pred             HHHHHHHHHHHhccCCeEEEEEecCCCc
Q 044393          240 ERADRLRLMFSESKGRKILIILDDVWKE  267 (513)
Q Consensus       240 ~~~~~l~~~~~l~~~~~~LlVLDd~~~~  267 (513)
                      ...-.+.+++.-. |++.|+++||+...
T Consensus       145 ~~a~tiAEyfrd~-G~~Vlll~Dsltr~  171 (276)
T d1fx0a3         145 YTGAALAEYFMYR-ERHTLIIYDDLSKQ  171 (276)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHc-CCceeEEeeccHHH
Confidence            3334444544444 59999999998654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.011  Score=50.25  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      +.|+|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.012  Score=48.08  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+++|.+|+|||||+..+.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.011  Score=48.78  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDKR   27 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            47899999999999999987653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.23  E-value=0.011  Score=48.62  Aligned_cols=22  Identities=32%  Similarity=0.298  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.21  E-value=0.035  Score=44.57  Aligned_cols=28  Identities=36%  Similarity=0.368  Sum_probs=25.0

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      ..+|.+.|.=|+||||+++.+++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            3689999999999999999999988654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0068  Score=53.00  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.|+|-|+-|+||||+++.+...+..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            78999999999999999999887653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.19  E-value=0.011  Score=48.24  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+|+|++|+|||||+..+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5889999999999999998664

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.013  Score=47.88  Aligned_cols=23  Identities=26%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~   28 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEKK   28 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58899999999999999987653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.013  Score=47.24  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+++|.+|+|||||+..+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.11  E-value=0.012  Score=50.14  Aligned_cols=21  Identities=48%  Similarity=0.623  Sum_probs=18.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVG  195 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~  195 (513)
                      -+|+|+|..|+||||+|+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.09  E-value=0.013  Score=47.82  Aligned_cols=23  Identities=26%  Similarity=0.137  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|.++|.+|+|||||+..+.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~~   26 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAGR   26 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999999998653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.012  Score=50.22  Aligned_cols=19  Identities=42%  Similarity=0.527  Sum_probs=17.7

Q ss_pred             EEEEEcCCCChHHHHHHHH
Q 044393          176 MVGLHGLGGVGKTTLAKFV  194 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~  194 (513)
                      +|+|+|+.|+||||+++.+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            8999999999999999866

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.01  E-value=0.011  Score=48.90  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ...|+|+|.+|+|||||...+...
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            367899999999999999988654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.014  Score=47.82  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||+..+.+..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999988753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.015  Score=47.37  Aligned_cols=23  Identities=26%  Similarity=0.172  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||++.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47899999999999999987643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.015  Score=47.81  Aligned_cols=23  Identities=39%  Similarity=0.471  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||++.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58899999999999999988643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.99  E-value=0.015  Score=47.69  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+++|.+|+|||||+..+.+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4899999999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.015  Score=47.89  Aligned_cols=23  Identities=39%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHcCC
Confidence            58999999999999999987643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.014  Score=47.85  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||+..+.+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999887643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.015  Score=47.48  Aligned_cols=23  Identities=39%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            57899999999999999887643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.016  Score=47.54  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||+|+..+.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.87  E-value=0.016  Score=47.34  Aligned_cols=23  Identities=30%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58899999999999999987654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.017  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.252  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||+..+.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58899999999999999887653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.017  Score=47.12  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||+..+.+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.015  Score=48.48  Aligned_cols=22  Identities=32%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|.|+|.+|+|||||+..+.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999988754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.018  Score=47.09  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..|+|+|..|+|||||+..+.+.
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.018  Score=47.32  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999887643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.017  Score=47.31  Aligned_cols=23  Identities=43%  Similarity=0.556  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999887643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.018  Score=47.44  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            468999999999999999887643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.71  E-value=0.017  Score=47.77  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ...|+|+|.+|+|||||+..+.+.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.018  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|.++|.+|+|||||+..+.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58899999999999999988654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.017  Score=47.68  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+|+|..|+|||||+..+.+.
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.67  E-value=0.018  Score=48.95  Aligned_cols=24  Identities=29%  Similarity=0.166  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      +-|+|+|++|+|||||...+.+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.019  Score=47.43  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..|.|+|.+|+|||||+..+.+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            467899999999999999887653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.017  Score=49.76  Aligned_cols=25  Identities=36%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhH
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ..++..|.|+-|+|||||++.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4689999999999999999998775

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.019  Score=46.88  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||+|+..+.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48899999999999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.47  E-value=0.021  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|..|+|||||+..+.+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            57899999999999999887654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.47  E-value=0.018  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.326  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .++.|.|++|+|||+++.+++....
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.021  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+++|.+|+|||||+..+...
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.44  E-value=0.022  Score=46.38  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|++|+|||||+..+....
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999886643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.02  Score=47.24  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhH
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ...|+|+|.+|+|||||...+.+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.39  E-value=0.033  Score=48.78  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             ccchhHHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          155 FETTKSACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       155 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      |+|....++.+.+.+..  ....-|.|.|+.|+|||++|+.+.....
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            56666666666555532  1115678999999999999999976543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.36  E-value=0.051  Score=46.76  Aligned_cols=37  Identities=32%  Similarity=0.467  Sum_probs=29.1

Q ss_pred             cEEEEE-cCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc
Q 044393          175 KMVGLH-GLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS  213 (513)
Q Consensus       175 ~vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~  213 (513)
                      ++|+|+ |-||+||||+|..++..+...  -..+..+...
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~--g~~VlliD~D   39 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQL--GHDVTIVDAD   39 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEeCC
Confidence            578887 889999999999999888754  3356677655

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.02  Score=48.12  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHhhCC
Confidence            58899999999999999988654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.021  Score=46.76  Aligned_cols=22  Identities=41%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.30  E-value=0.021  Score=47.01  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -.|+++|++|+|||||+..+.+.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999988654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.27  E-value=0.018  Score=47.68  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+|+|.+|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.25  E-value=0.04  Score=51.20  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..-+..+||.|+|||-||+.++...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            3558899999999999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.024  Score=47.11  Aligned_cols=23  Identities=30%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||+..+.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            68999999999999999987653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.13  E-value=0.025  Score=46.99  Aligned_cols=22  Identities=41%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+++|.+|+|||||+..+.+.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.025  Score=45.70  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+|+|.+|+|||||...+.+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999997543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.07  E-value=0.025  Score=49.27  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+|+|+|..|+||||+|+.+.+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.026  Score=46.36  Aligned_cols=22  Identities=41%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+++|.+|+|||||+..+.+.
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999888764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.026  Score=46.93  Aligned_cols=23  Identities=35%  Similarity=0.313  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|.|+|.+|+|||||+..+.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            48999999999999999987653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.97  E-value=0.037  Score=46.07  Aligned_cols=24  Identities=29%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHhh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .|.++|.+|+|||||++.+....-
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~   27 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC
Confidence            588999999999999998876543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.49  Score=40.36  Aligned_cols=44  Identities=18%  Similarity=0.047  Sum_probs=36.0

Q ss_pred             chhHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          157 TTKSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       157 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.....+++...+..+......|.|..|+|||-++-..+...-.
T Consensus        59 ~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~  102 (233)
T d2eyqa3          59 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD  102 (233)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence            45677888888888887788999999999999999877766543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.94  E-value=0.028  Score=45.87  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+|+|||||+..+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            468999999999999999987543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.025  Score=46.43  Aligned_cols=22  Identities=45%  Similarity=0.524  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|.++|.+|+|||||+..+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.028  Score=46.30  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||+..+.+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48899999999999999887643

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.92  E-value=0.028  Score=46.48  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|.++|..|+|||+|+..+.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            57899999999999999887753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.91  E-value=0.027  Score=46.20  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|.++|.+|+|||||+..+.+..
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            458899999999999999987543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.89  E-value=0.014  Score=48.55  Aligned_cols=22  Identities=45%  Similarity=0.623  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      -|+|+|.+++|||||...+.+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999988654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.89  E-value=0.015  Score=48.24  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhH
Q 044393          177 VGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       177 i~I~G~~G~GKTtLa~~~~~~  197 (513)
                      |+|+|.+|+|||||+..+.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.029  Score=45.89  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|.++|..|+|||||+..+.+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            47889999999999999988753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.69  E-value=0.028  Score=47.17  Aligned_cols=19  Identities=37%  Similarity=0.464  Sum_probs=17.8

Q ss_pred             EEEEEcCCCChHHHHHHHH
Q 044393          176 MVGLHGLGGVGKTTLAKFV  194 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~  194 (513)
                      .|.|+|.+|+|||||+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999988

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.016  Score=47.58  Aligned_cols=22  Identities=41%  Similarity=0.378  Sum_probs=18.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+++|.+|+|||||+..+.+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999887654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.032  Score=46.61  Aligned_cols=23  Identities=30%  Similarity=0.216  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||+|+..+.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            57899999999999998887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.034  Score=45.78  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+++|.+|+|||||+..+.+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999887654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.54  E-value=0.032  Score=46.69  Aligned_cols=22  Identities=32%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|.++|.+|+|||||+..+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999998655

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.41  E-value=0.034  Score=46.09  Aligned_cols=24  Identities=33%  Similarity=0.321  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|..|+|||||+..+.+..
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            468999999999999999988643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.32  E-value=0.081  Score=45.48  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             cEEEEE-cCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEc
Q 044393          175 KMVGLH-GLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVS  213 (513)
Q Consensus       175 ~vi~I~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~  213 (513)
                      ++|+|+ +-||+||||++..++..+...  -..++.+...
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~--g~~VlliD~D   40 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDGD   40 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEeCC
Confidence            689999 779999999999999888754  2346666654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.27  E-value=0.041  Score=47.42  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .++.|.|++|+|||+||.+++..
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            89999999999999999876544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.02  E-value=0.026  Score=46.77  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             CCccEEEEEcCCCChHHHHHHHHHhH
Q 044393          172 GSTKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       172 ~~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      ...-.|+++|.+|+|||||+..+.+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            33457889999999999999987543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.01  E-value=0.04  Score=45.14  Aligned_cols=23  Identities=30%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .-|.|.|++|+||||||..+..+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            67899999999999999887764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.024  Score=46.95  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhH
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      +...|+|+|.+++|||||.+.+.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3478999999999999999888553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.89  E-value=0.039  Score=52.67  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +=|.++||.|+|||-||+.++.....
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~V   75 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANA   75 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46889999999999999999997754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.82  E-value=0.025  Score=46.50  Aligned_cols=22  Identities=32%  Similarity=0.289  Sum_probs=9.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhH
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999877653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.69  E-value=0.05  Score=46.65  Aligned_cols=22  Identities=32%  Similarity=0.361  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      ..|.++|.+|+|||||++.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999998854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.56  E-value=0.045  Score=44.86  Aligned_cols=23  Identities=35%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .-|.|.|++|+||||||..+..+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            67889999999999999888654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.56  E-value=0.019  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.251  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .|+++|.+|+|||||+..+.+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.063  Score=45.59  Aligned_cols=28  Identities=21%  Similarity=0.120  Sum_probs=24.6

Q ss_pred             cEEEEEcCC-CChHHHHHHHHHhHhhhcC
Q 044393          175 KMVGLHGLG-GVGKTTLAKFVGNQLRQEK  202 (513)
Q Consensus       175 ~vi~I~G~~-G~GKTtLa~~~~~~~~~~~  202 (513)
                      +.+.|.|-+ |+||||++..++..+..++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G   30 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAG   30 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence            568899998 9999999999999987763

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.25  E-value=0.054  Score=44.02  Aligned_cols=23  Identities=26%  Similarity=0.218  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhH
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQ  197 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~  197 (513)
                      .-|.|.|++|+||||||..+..+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            67899999999999999887765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.071  Score=47.17  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .++.|+|++|+|||||+..++.....
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia~   55 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIAG   55 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHc
Confidence            68889999999999999988876543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.021  Score=48.11  Aligned_cols=26  Identities=27%  Similarity=0.247  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      .+.+|+|++|+||||++..+.--+..
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56789999999999999999876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.60  E-value=0.11  Score=45.45  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcC--CccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          160 SACNQITEALKKG--STKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       160 ~~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+.++...+.+.  ..-.|+|+|.+|+|||||...+.+..
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444555555443  23578899999999999999998754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.03  E-value=0.041  Score=47.18  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      +..+++|.+|+|||||+..+..+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            567799999999999999887654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=0.15  Score=47.03  Aligned_cols=41  Identities=20%  Similarity=0.000  Sum_probs=26.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhhc-CCCCeEEEEEEcCC
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQE-KIFDEVGIATVSQD  215 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~  215 (513)
                      ++..|.|++|+||||++..+...+... ..-...+.++.+..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTg  205 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG  205 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcH
Confidence            799999999999999987765544322 11123445554443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.88  E-value=0.061  Score=48.54  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      ++.+|+|++|+||||+..++.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            5889999999999999988854

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.61  E-value=0.1  Score=44.85  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++|+|+|..++|||||+..+....
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            679999999999999999887654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.02  E-value=0.3  Score=45.72  Aligned_cols=119  Identities=12%  Similarity=0.084  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHhcCCccEEEEEcCCCChHHHHHHHHHhHhhhcCCCCeEEEEEEcCCCChHHHHHHHHHHhCCCCCCCCH
Q 044393          159 KSACNQITEALKKGSTKMVGLHGLGGVGKTTLAKFVGNQLRQEKIFDEVGIATVSQDPDIINVQSELVKWLGWELKEKDE  238 (513)
Q Consensus       159 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~  238 (513)
                      ...++.+...+... ...|.|.|+.|+||||.+..+.+..... . ..  .+++..+....  +..+ .+.  .......
T Consensus       144 ~~~~~~l~~l~~~~-~GliLvtGpTGSGKSTTl~~~l~~~~~~-~-~~--i~tiEdPiE~~--~~~~-~q~--~v~~~~~  213 (401)
T d1p9ra_         144 AHNHDNFRRLIKRP-HGIILVTGPTGSGKSTTLYAGLQELNSS-E-RN--ILTVEDPIEFD--IDGI-GQT--QVNPRVD  213 (401)
T ss_dssp             HHHHHHHHHHHTSS-SEEEEEECSTTSCHHHHHHHHHHHHCCT-T-SC--EEEEESSCCSC--CSSS-EEE--ECBGGGT
T ss_pred             HHHHHHHHHHHhhh-hceEEEEcCCCCCccHHHHHHhhhhcCC-C-ce--EEEeccCcccc--cCCC-Cee--eecCCcC
Confidence            34455555555433 3899999999999999999988876432 1 11  22333222100  0000 000  0000011


Q ss_pred             HHHHHHHHHHHHhccCCeEEEEEecCCCcccccccc-cCCCCcEEEEEeCchH
Q 044393          239 EERADRLRLMFSESKGRKILIILDDVWKELDLETVG-IPANCCKILLTTRLQQ  290 (513)
Q Consensus       239 ~~~~~~l~~~~~l~~~~~~LlVLDd~~~~~~~~~l~-~~~~~~~iivTtr~~~  290 (513)
                      ......++.  .+.. .+=+|++.++.+........ ....|-.|+.|-|-.+
T Consensus       214 ~~~~~~l~~--~lR~-dPDvi~igEiRd~~ta~~a~~aa~tGhlV~tTlHa~~  263 (401)
T d1p9ra_         214 MTFARGLRA--ILRQ-DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT  263 (401)
T ss_dssp             BCHHHHHHH--HGGG-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCHHHHHHH--HHhh-cCCEEEecCcCChHHHHHHHHHHhcCCeEEEEeccCc
Confidence            123344444  3443 66688888887765543332 2223777777777544

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=88.84  E-value=0.1  Score=42.80  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHh
Q 044393          176 MVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       176 vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      -|+|+|..++|||||+..+.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            599999999999999998875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.67  E-value=0.12  Score=47.06  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=24.1

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHhhhc
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQLRQE  201 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~~~~  201 (513)
                      +-.|.|=|+-|+||||+++.+.+.....
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~   33 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGG   33 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccC
Confidence            3578899999999999999999987644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.29  E-value=0.14  Score=45.02  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          174 TKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       174 ~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      .+-|+|+|..|.|||||+..+....
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHc
Confidence            3679999999999999999886543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=88.07  E-value=0.22  Score=41.31  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhc-CCccEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          160 SACNQITEALKK-GSTKMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       160 ~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      .-+..+..+|.. .....+.++||++.|||++|..+.+-+.
T Consensus        38 ~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          38 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            345556666633 2347999999999999999999888764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.98  E-value=0.14  Score=45.22  Aligned_cols=28  Identities=18%  Similarity=0.144  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          173 STKMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       173 ~~~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      +.+-|+|+|..|.|||||+..+......
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            3467999999999999999988766543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.16  E-value=0.16  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      .+-+|+|++|+|||++..++.-
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.55  E-value=0.15  Score=46.37  Aligned_cols=26  Identities=31%  Similarity=0.280  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLRQ  200 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~~  200 (513)
                      -.|+|-|+-|+||||+++.+.+....
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46899999999999999999987754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.44  E-value=0.13  Score=46.57  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHhh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQLR  199 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~~  199 (513)
                      -.|+|-|+-|+||||+++.+.+...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            4689999999999999999987654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.08  E-value=0.25  Score=44.04  Aligned_cols=18  Identities=6%  Similarity=-0.167  Sum_probs=15.1

Q ss_pred             CcEEecHHHHHHHHHHhc
Q 044393          465 GFVKMHDIVRDVAIWIGK  482 (513)
Q Consensus       465 ~~~~mH~lv~~~a~~~~~  482 (513)
                      ..||.|.-|-++|..+..
T Consensus       274 ~nyRs~~~I~~~an~l~~  291 (306)
T d1uaaa1         274 QNYRSSGRILKAANILIA  291 (306)
T ss_dssp             CBSSSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            468999999999988764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.85  E-value=0.21  Score=44.15  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=24.1

Q ss_pred             cCCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          171 KGSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       171 ~~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ++.+.+|+|+|+-+.|||||+..+++..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3457899999999999999999998754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.25  E-value=0.3  Score=43.89  Aligned_cols=19  Identities=5%  Similarity=-0.191  Sum_probs=15.7

Q ss_pred             CcEEecHHHHHHHHHHhcc
Q 044393          465 GFVKMHDIVRDVAIWIGKV  483 (513)
Q Consensus       465 ~~~~mH~lv~~~a~~~~~~  483 (513)
                      ..||.|.-|.++|..+..+
T Consensus       284 ~nyRs~~~I~~~an~ll~~  302 (318)
T d1pjra1         284 QNYRSTKRILQAANEVIEH  302 (318)
T ss_dssp             BCSSSCHHHHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHHHHHHc
Confidence            3578999999999998764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.08  E-value=0.55  Score=41.02  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhc--CCccEEEEEcCCCChHHHHHHHHHhHh
Q 044393          160 SACNQITEALKK--GSTKMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       160 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      ..+..+..+|..  +....+.++|+|+.|||+++..+.+-.
T Consensus        88 ~f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344556666643  345789999999999999999998876

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.55  E-value=0.26  Score=46.15  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      --|+|+|.+|+|||||...+.+
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4599999999999999999986

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.43  E-value=0.33  Score=40.66  Aligned_cols=22  Identities=36%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhHh
Q 044393          177 VGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       177 i~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      |+|+|..+.|||||+.++....
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHh
Confidence            8999999999999999886544

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=81.55  E-value=0.4  Score=42.26  Aligned_cols=24  Identities=33%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+.+|||||...+.+..
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999888654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.33  E-value=0.43  Score=42.52  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHHhHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGNQL  198 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~~~  198 (513)
                      -.|+|+|.+.+|||||...+.+..
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            569999999999999999998653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=80.28  E-value=0.73  Score=35.27  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHHh
Q 044393          175 KMVGLHGLGGVGKTTLAKFVGN  196 (513)
Q Consensus       175 ~vi~I~G~~G~GKTtLa~~~~~  196 (513)
                      ++..|+++.|+|||+++-.++.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            7888999999999998866554