Citrus Sinensis ID: 044439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MNPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLPGR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccHHHHHHHHHcccHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHcccHHHHHHHccccccHHHcccccccEEEEEEEccccccccHHHHHHHHHHHcccHHcccccccccHHHHHHHcccHHHHHHHHHHHHcccccccccccccEEEcc
Coil and Loop (DISEMBL)
mnpvsihpnlfkaaaagnaepfkkdIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLllkvnakgdtplqvaakfghSDIVSVLIKEAksaqhgneeperglklpgr
Flexible Loop (DISEMBL)
mnpvsihpnlfkaaaagnaepfkkDIRRDEIESLltaqtkntilhinitsrkrknvSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKeaksaqhgneeperglklpgr
Low Complexity Region (SEG)
MNPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLPGR
Disordered region (IsUnstruct)
******************************IESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI**********************
Disordered Region (DISOPRED)
*NPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAK***********GLKLPG*
Disordered Region (DISEMBL)
MNPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKE********************
Disordered Region (DISPRO)
*NPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLPGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
224127089	217	predicted protein [Populus trichocarpa]	0.867	0.483	0.468	2e-17
224127096	219	predicted protein [Populus trichocarpa]	0.867	0.479	0.432	1e-16
224127093	281	predicted protein [Populus trichocarpa]	0.867	0.373	0.423	2e-16
224145572	395	predicted protein [Populus trichocarpa]	0.801	0.245	0.454	3e-16
224127071	129	predicted protein [Populus trichocarpa]	0.793	0.744	0.454	1e-15
224127081	227	predicted protein [Populus trichocarpa]	0.909	0.484	0.410	1e-15
224127079	394	predicted protein [Populus trichocarpa]	0.867	0.266	0.432	2e-15
224127104	405	predicted protein [Populus trichocarpa]	0.909	0.271	0.410	2e-15
224127098	399	predicted protein [Populus trichocarpa]	0.909	0.275	0.410	2e-15
224153949	159	predicted protein [Populus trichocarpa]	0.785	0.597	0.469	3e-15

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 73/111 (65%), Gaps = 6/111 (5%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAA AGN  PF+    R  +  LLT   +NTILH+ + ++ R+  ST F++ IL
Sbjct: 5   MDPLLFKAAEAGNIGPFENYQTR--LNQLLTPD-ENTILHVYLGNQSREPESTDFVDIIL 61

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL 116
           E+CP LLL+ N KG+ PL +AA++GHS++V VLI  AK+      +PE GL
Sbjct: 62  EMCPPLLLQANEKGEIPLHLAARYGHSNVVKVLIDCAKALP---TDPESGL 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127096|ref|XP_002329393.1| predicted protein [Populus trichocarpa] gi|222870443|gb|EEF07574.1| predicted protein [Populus trichocarpa]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 6/111 (5%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAA AGN  PF+ D  +  +  L T   +NTILH+ + ++  +  ST F+++IL
Sbjct: 5   MDPVLFKAAEAGNIGPFEND--QTCLNQLFTPD-ENTILHVCLGNQSSEPESTYFVDKIL 61

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL 116
           E+CP LLL+ N KG+ PL +AA++GHS++V VLI  A++      +PE G+
Sbjct: 62  EMCPPLLLQANKKGEIPLHLAARYGHSNVVRVLIDRARARP---TDPESGV 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 75/111 (67%), Gaps = 6/111 (5%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAA AG+  PF+    +  ++ LLT   +NTILH+ + ++ R+   T F+++IL
Sbjct: 5   MDPVLFKAAEAGDIGPFEN--YQTCLDQLLTPD-ENTILHVYLGNQSREPEFTDFVDKIL 61

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL 116
           E+CP LLL+ N KG+ PL +AA++GHS++V VLI+ A++      +PE G+
Sbjct: 62  EMCPPLLLQANKKGEIPLHLAARYGHSNVVGVLIERAEALP---TDPESGV 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P L+KAA AGN  PFK D     +  LLT + KNTILH+ + ++++ + ST F+ +I+
Sbjct: 1   MEPKLYKAAEAGNINPFK-DRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQII 58

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
           ++CP LLL+ N KG+ PL  AA++G S++V VLI  AK+
Sbjct: 59  DMCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKA 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127071|ref|XP_002329382.1| predicted protein [Populus trichocarpa] gi|222870432|gb|EEF07563.1| predicted protein [Populus trichocarpa]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAAA G+ +PF+K   +  ++ LLT   +NTILH+ + ++ R+   T F+  IL
Sbjct: 13  MDPVLFKAAAEGDIDPFEK--YQTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIIL 69

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
           E+CP LL + N KG+ PL +AA +GHS++V VLI  AK+
Sbjct: 70  EMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKA 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 7/117 (5%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAAA G+ +PF+K   +  ++ LLT   +NTILH+ + ++ R+   T F+  IL
Sbjct: 13  MDPVLFKAAAEGDIDPFEK--YQTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIIL 69

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS----AQHGNEEPERGLKL 118
           E+CP LL + N KG+ PL +AA +GHS++V VLI  AK+    ++ G  E ++ L++
Sbjct: 70  EMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRM 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 6/111 (5%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAA AGN  PF+    +  +  LLTA  +NTILH+ + ++  +  ST F+++ L
Sbjct: 1   MDPVLFKAAEAGNIGPFEN--YQTSLNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFL 57

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL 116
           E CP LL + N +G+TPL +AA+ GHS++V VLI  AK+      +PE G+
Sbjct: 58  ERCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALP---ADPESGV 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 7/117 (5%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAAA G+ +PF+K   +  ++ LLT   +NTILH+ + ++ R+   T F+  IL
Sbjct: 13  MDPVLFKAAAEGDIDPFEK--YQTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIIL 69

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS----AQHGNEEPERGLKL 118
           E+CP LL + N KG+ PL +AA +GHS++V VLI  AK+    ++ G  E ++ L++
Sbjct: 70  EMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRM 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 7/117 (5%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P LFKAAA G+ +PF+K   +  ++ LLT   +NTILH+ + ++ R+   T F+  IL
Sbjct: 7   MDPVLFKAAAEGDIDPFEK--YQTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIIL 63

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS----AQHGNEEPERGLKL 118
           E+CP LL + N KG+ PL +AA +GHS++V VLI  AK+    ++ G  E ++ L++
Sbjct: 64  EMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRM 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224153949|ref|XP_002337415.1| predicted protein [Populus trichocarpa] gi|222839159|gb|EEE77510.1| predicted protein [Populus trichocarpa]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 3/98 (3%)

Query: 6   IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL 65
           + P L+KAA AGN  PFK D+    IE LLT Q KNTILH+ + ++ R++ ST F+ +I+
Sbjct: 1   MEPKLYKAAEAGNINPFK-DLPTSLIE-LLTPQ-KNTILHVYLENQLRESESTDFVGQII 57

Query: 66  EICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAK 103
           E+CP LL + N KG+TPL  AA++G S+++  +  E K
Sbjct: 58  EMCPPLLFQANKKGETPLHFAARYGCSNVMLRMTNEEK 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.876	0.152	0.353	3.4e-08
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.595	0.134	0.346	1.9e-05
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.438	0.092	0.396	3.4e-05
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.834	0.168	0.333	4.6e-05
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.892	0.161	0.289	6.8e-05
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.884	0.166	0.252	8.2e-05
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.710	0.143	0.279	0.00026
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.743	0.146	0.322	0.00027
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.694	0.362	0.298	0.00032
UNIPROTKB|Q8N8A2	993	ANKRD44 "Serine/threonine-prot	0.487	0.059	0.402	0.00056

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 40/113 (35%), Positives = 60/113 (53%)

Query:     4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEE 63
             V + P +F   + GN E  +K   R    + + + T ++ILH+ +T         + ++E
Sbjct:    96 VRMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGH-----LELVKE 150

Query:    64 ILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVS--VLIKEAKSAQHGNEEPER 114
             I+  CP LLL+ N+ G TPL VAA  GH+ IV   V +    SA+  NEE ER
Sbjct:   151 IVCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESER 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 27/78 (34%), Positives = 46/78 (58%)

Query:    42 TILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKE 101
             T LH+ +     K  + + +++I+EI PSL+   N K DTPL +AA+ GH+ I+ ++++ 
Sbjct:    29 TFLHLAV-----KLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLES 83

Query:   102 -AKSAQHGNEEPERGLKL 118
              A+S +   E     LKL
Sbjct:    84 TAESIESLEETVPNDLKL 101

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:    42 TILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI 99
             T+LH+  T    K +    +E I+++CPSL+   N  GDTPL  AA++GH+ IV+ ++
Sbjct:    56 TVLHL-ATELGHKEI----VEAIIKLCPSLVGVTNLDGDTPLHFAARWGHATIVAQIL 108

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 38/114 (33%), Positives = 57/114 (50%)

Query:     6 IHPNLFKAAAAGNAEPFKK--DIRRDEIESLLTAQ-TKNTILHINITSRKRKNVSTKFIE 62
             +HP +F A    +   F    + R   +E     Q T NT+LH+      R+ V+     
Sbjct:     1 MHP-IFDAILQNDLPAFLGLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVA----- 54

Query:    63 EILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK---EAKSAQHG-NEEP 112
             +I+E+ PSLL   NA GDTPL +AA  G  +IV  ++    E  SA++  N+ P
Sbjct:    55 KIIELRPSLLSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLELYSARNNKNQTP 108

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 33/114 (28%), Positives = 54/114 (47%)

Query:     4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEE 63
             V + P +F   + G  E  +K          + + T ++ILHI   + K  ++  + ++E
Sbjct:    65 VEMTPEIFGGMSNGEKECLEKLRSNGTPMERVKSNTGDSILHI---AAKWGHL--ELVKE 119

Query:    64 ILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHG-NEEPERGL 116
             I+  CP LL + N+   TPL VA   GH+ +V  L+    SA    + E   GL
Sbjct:   120 IIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESEGL 173

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 28/111 (25%), Positives = 50/111 (45%)

Query:     4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEE 63
             VS++P +F A  AGN + F   ++ +    L   + +     +++ +   +    + ++ 
Sbjct:    34 VSMNPEIFSAMRAGNVK-FLDKMKTNNNTPLACFRNETGDFTLHLAAAWGR---LELVKR 89

Query:    64 ILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPER 114
             I+  CP LLL+ N+K   PL  AA  G   +V   +        G  E ER
Sbjct:    90 IVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEER 140

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
 Identities = 26/93 (27%), Positives = 53/93 (56%)

Query:    14 AAAGNAEPFKKDIRRDEIESLL--TAQTKNTILHINITSRKRKNVSTKFIEEILEICPSL 71
             AA    +P   D   ++  SL+    + ++T+LH  +T R  +  +TK    ++++CPSL
Sbjct:    40 AAFTGQQPVIIDKMLEKFPSLVLDVDEEQSTLLHKAVTQRNEE-YATK----VIDLCPSL 94

Query:    72 LLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS 104
             +   N  G+TPL +AA+ G+ +I+  +++  ++
Sbjct:    95 VSVTNVDGNTPLHLAAEIGNINILWKMLETGEA 127

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
 Identities = 31/96 (32%), Positives = 49/96 (51%)

Query:     6 IHPNLFKAAAAGNAEPFKKDIRRD-EIESLLTAQTKNTILHINITSRKRKNVSTKFIEEI 64
             ++P +  A  AG+     K I  D ++   L     N+ILHI   +    +V    +E I
Sbjct:    37 MNPAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHI---AAALGHVH--IVEFI 91

Query:    65 LEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
             +   P+LL  VN  G+T L VAA+ G  +IV +L++
Sbjct:    92 ISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVR 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 93 (37.8 bits), Expect = 0.00032, P = 0.00032
 Identities = 26/87 (29%), Positives = 41/87 (47%)

Query:    27 RRDEIESLLTAQTKNTILHINITS--RKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ 84
             R D ++ LLT   KN           R   N S   +E +L+   + +   N +GDTPL 
Sbjct:   125 RSDIVDLLLTHGAKNRKDDTGSAPIHRASSNGSVATVERLLK-GEANINSTNNEGDTPLH 183

Query:    85 VAAKFGHSDIVSVLIKEAKSAQHGNEE 111
             +AA++ H D+V  L+K        N++
Sbjct:   184 IAAEYNHEDVVECLLKHGADTTIENKD 210

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8N8A2 ANKRD44 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B" [Homo sapiens (taxid:9606)]

 Score = 90 (36.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
 Identities = 27/67 (40%), Positives = 37/67 (55%)

Query:    39 TKNTILHINITSRKRKNVSTKFIEEILEIC--PSLLLKVNAKGDTPLQVAAKFGHSDIVS 96
             TK T LH ++      N  T  +  +LEI   P  +   +AKG TPL +A  +GH D VS
Sbjct:   633 TKRTPLHASVI-----NGHTLCLRLLLEIADNPEAVDVKDAKGQTPLMLAVAYGHIDAVS 687

Query:    97 VLI-KEA 102
             +L+ KEA
Sbjct:   688 LLLEKEA 694

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_120000023	hypothetical protein (217 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_7044000001	annotation not avaliable (189 aa)			•						0.412
	eugene3.00400032	hypothetical protein (195 aa)			•						0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 10  LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP 69
           L  AA  GN E  K  +   E  + +     +T LH+       +N + + ++ +LE   
Sbjct: 1   LHLAAKNGNLELVKLLL---EKGADVNLGDTDTALHLAA-----RNGNLEIVKLLLEHGA 52

Query: 70  SLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            +  K +  G+T L +AA+ G+ +IV +L++
Sbjct: 53  DVNAK-DKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 10  LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP 69
           L  AA  G+ E  K  + +   +     +  NT LH+   +          ++ +L+   
Sbjct: 44  LHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARNGN-----LDVVKLLLK-HG 96

Query: 70  SLLLKVNAKGDTPLQVAAKFGHSDIVSVLI 99
           + +   +  G TPL +AAK GH ++V +L+
Sbjct: 97  ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 41  NTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            T LH+       KN   + ++ +LE    +  + +  G+TPL +AA+ G+ D+V +L+K
Sbjct: 41  RTPLHLAA-----KNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLK 94

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 33.3 bits (77), Expect = 0.002
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 78  KGDTPLQVAAKFGHSDIVSVLIK 100
            G+TPL +AA+ GH ++V +L++
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 64  ILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
           +LE  P  L   +  G+TPL +AAK+G  ++V  L+K
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK 37

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02791	284	ankyrin-like protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.76
PHA02791	284	ankyrin-like protein; Provisional	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
PHA02875	413	ankyrin repeat protein; Provisional	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.75
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.74
PHA02875	413	ankyrin repeat protein; Provisional	99.73
PHA02874	434	ankyrin repeat protein; Provisional	99.73
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.73
PHA02736	154	Viral ankyrin protein; Provisional	99.73
KOG0510	929	consensus Ankyrin repeat protein [General function	99.73
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
PHA02878	477	ankyrin repeat protein; Provisional	99.72
PHA02859	209	ankyrin repeat protein; Provisional	99.71
PHA02743	166	Viral ankyrin protein; Provisional	99.71
KOG0510	929	consensus Ankyrin repeat protein [General function	99.7
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.69
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.69
PHA02859	209	ankyrin repeat protein; Provisional	99.69
PHA03100	480	ankyrin repeat protein; Provisional	99.68
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.68
PHA02876	682	ankyrin repeat protein; Provisional	99.68
PHA02741	169	hypothetical protein; Provisional	99.66
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.66
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.66
KOG0508	615	consensus Ankyrin repeat protein [General function	99.66
PHA02878	477	ankyrin repeat protein; Provisional	99.66
PHA02874	434	ankyrin repeat protein; Provisional	99.66
PHA02736	154	Viral ankyrin protein; Provisional	99.66
PHA03095	471	ankyrin-like protein; Provisional	99.66
PHA03095	471	ankyrin-like protein; Provisional	99.65
KOG0514	452	consensus Ankyrin repeat protein [General function	99.64
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.64
PHA03100	480	ankyrin repeat protein; Provisional	99.64
PHA02795	437	ankyrin-like protein; Provisional	99.63
KOG0508	615	consensus Ankyrin repeat protein [General function	99.63
PHA02946	446	ankyin-like protein; Provisional	99.63
PHA02795	437	ankyrin-like protein; Provisional	99.62
PHA02876	682	ankyrin repeat protein; Provisional	99.6
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.6
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.59
PHA02917	661	ankyrin-like protein; Provisional	99.58
PHA02798	489	ankyrin-like protein; Provisional	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.57
PHA02798	489	ankyrin-like protein; Provisional	99.57
PHA02884	300	ankyrin repeat protein; Provisional	99.57
PHA02989	494	ankyrin repeat protein; Provisional	99.57
PHA02946	446	ankyin-like protein; Provisional	99.56
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.56
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.55
KOG0514	452	consensus Ankyrin repeat protein [General function	99.55
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.49
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.48
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
PHA02989	494	ankyrin repeat protein; Provisional	99.47
PHA02917	661	ankyrin-like protein; Provisional	99.46
PHA02792	631	ankyrin-like protein; Provisional	99.46
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
PHA02730	672	ankyrin-like protein; Provisional	99.46
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.41
PHA02730	672	ankyrin-like protein; Provisional	99.37
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.36
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.35
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.34
PF13606	30	Ank_3: Ankyrin repeat	99.29
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.29
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.28
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.28
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.27
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.27
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.26
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.23
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.23
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.21
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.2
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.16
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.13
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.12
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.11
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.11
PHA02792	631	ankyrin-like protein; Provisional	99.09
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.08
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.0
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.89
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.82
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.74
KOG0522	560	consensus Ankyrin repeat protein [General function	98.71
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.61
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.51
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.45
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.45
PF13606	30	Ank_3: Ankyrin repeat	98.44
KOG0511	516	consensus Ankyrin repeat protein [General function	98.42
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.34
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.33
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.3
KOG0522	560	consensus Ankyrin repeat protein [General function	98.25
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.05
KOG0511	516	consensus Ankyrin repeat protein [General function	97.98
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.97
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.96
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.95
KOG2384	223	consensus Major histocompatibility complex protein	97.68
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.52
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.5
KOG2384	223	consensus Major histocompatibility complex protein	97.27
KOG2505	591	consensus Ankyrin repeat protein [General function	96.6
KOG2505	591	consensus Ankyrin repeat protein [General function	96.57
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.55
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	94.16
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.66
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.45

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=6e-22  Score=117.74  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhh-hHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDE-IESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      +...+|||+|+..|+.+++.+|++... ..+..+ ..||||||+|+..+     ..++|+.|+.+.+.+++..+..|.|+
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkD-daGWtPlhia~s~g-----~~evVk~Ll~r~~advna~tn~G~T~  109 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKD-DAGWTPLHIAASNG-----NDEVVKELLNRSGADVNATTNGGQTC  109 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhcCCCCCCCcc-ccCCchhhhhhhcC-----cHHHHHHHhcCCCCCcceecCCCcce
Confidence            345566666666666666666664321 122222 25666666666555     45666666555445555556666666


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      ||+|+..|..|++++|++.|+.++++...+
T Consensus       110 LHyAagK~r~eIaqlLle~ga~i~~kD~~~  139 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLLEKGALIRIKDKQG  139 (226)
T ss_pred             ehhhhcCChhhHHHHHHhcCCCCccccccc
Confidence            666666666666666666666555554433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=7.3e-20  Score=99.86  Aligned_cols=89  Identities=26%  Similarity=0.300  Sum_probs=76.1

Q ss_pred             HHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHh
Q 044439           10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKF   89 (121)
Q Consensus        10 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~   89 (121)
                      ||.|+..|+.++++.|++.+....     .|.+|||+|+..+     +.+++++|++. +...+..+..|.||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-----~~~~~l~~A~~~~-----~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-----LGNTALHYAAENG-----NLEIVKLLLEN-GADINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-----SSSBHHHHHHHTT-----THHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-----CCCCHHHHHHHcC-----CHHHHHHHHHh-cccccccCCCCCCHHHHHHHc
Confidence            799999999999999998643221     1789999999998     69999999998 667788899999999999999


Q ss_pred             CCHHHHHHHHHhCCCCCCCC
Q 044439           90 GHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        90 g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      |+.+++++|+++|++++..+
T Consensus        70 ~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             THHHHHHHHHHTTT-TTSS-
T ss_pred             CCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999888653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5.1e-20  Score=109.59  Aligned_cols=104  Identities=24%  Similarity=0.243  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      +-+|||.|+..|+.++|+.|+.+ +......+. .|.|+||+|+..+     +.++.++|+.. +..++..|..|.||||
T Consensus        72 GWtPlhia~s~g~~evVk~Ll~r~~advna~tn-~G~T~LHyAagK~-----r~eIaqlLle~-ga~i~~kD~~~qtplH  144 (226)
T KOG4412|consen   72 GWTPLHIAASNGNDEVVKELLNRSGADVNATTN-GGQTCLHYAAGKG-----RLEIAQLLLEK-GALIRIKDKQGQTPLH  144 (226)
T ss_pred             CCchhhhhhhcCcHHHHHHHhcCCCCCcceecC-CCcceehhhhcCC-----hhhHHHHHHhc-CCCCcccccccCchhH
Confidence            44789999999999999999887 455555555 8899999999877     68888999888 6777888899999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      =|+.-|..+++++|+..|+.+|.....|..++
T Consensus       145 RAAavGklkvie~Li~~~a~~n~qDk~G~TpL  176 (226)
T KOG4412|consen  145 RAAAVGKLKVIEYLISQGAPLNTQDKYGFTPL  176 (226)
T ss_pred             HHHhccchhhHHHHHhcCCCCCcccccCccHH
Confidence            99999999999999999988887776666554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.1e-18  Score=105.28  Aligned_cols=106  Identities=14%  Similarity=0.057  Sum_probs=72.3

Q ss_pred             CCCHHHHHHHHcCChHH---HHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc
Q 044439            5 SIHPNLFKAAAAGNAEP---FKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT   81 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~---~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   81 (121)
                      ...++||+|+..|..+.   ++.|+..+..........|.||||+|+..+     +.+++++|+...+...+..+..|.|
T Consensus        56 ~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g-----~~~iv~~Ll~~~gad~~~~d~~g~t  130 (166)
T PHA02743         56 HGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTK-----NYELAEWLCRQLGVNLGAINYQHET  130 (166)
T ss_pred             CCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhC-----CHHHHHHHHhccCCCccCcCCCCCC
Confidence            45677888887776544   566666654443333235778888887776     5777777775325556667777888


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           82 PLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        82 pL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |||+|+..++.+++++|+.+|++++..+..+.+.
T Consensus       131 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  164 (166)
T PHA02743        131 AYHIAYKMRDRRMMEILRANGAVCDDPLSIGLSD  164 (166)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcccCCccC
Confidence            8888888888888888888888777766665543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.77  E-value=5.7e-18  Score=109.68  Aligned_cols=96  Identities=11%  Similarity=0.075  Sum_probs=57.6

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH-HHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP-LQV   85 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp-L~~   85 (121)
                      .+|||+|+..|+.++++.|++.+...  .....|.||||+|+..+     +.++++.|++. +..++..+..|.|| ||+
T Consensus       129 ~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g-----~~eiv~lLL~~-gAd~n~~d~~g~t~~L~~  200 (284)
T PHA02791        129 KTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNG-----HVDMMILLLDY-MTSTNTNNSLLFIPDIKL  200 (284)
T ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcC-----CHHHHHHHHHC-CCCCCcccCCCCChHHHH
Confidence            35666666666666666666542111  11113567777777666     46677777766 44455556666655 677


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      |+..|+.+++++|+++|++++..+.
T Consensus       201 Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        201 AIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             HHHcCCHHHHHHHHHCCCCCccCcc
Confidence            7777777777777777776665554

>PHA02741 hypothetical protein; Provisional

Probab=99.76  E-value=8.9e-18  Score=101.67  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhh------hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccC
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRR------DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNA   77 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~------~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~   77 (121)
                      ....++||+|+..|+.++++.++..      +......+ ..|.||||+|+..++.. ...+++++|+.. +...+.++.
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d-~~g~T~Lh~A~~~g~~~-~~~~ii~~Ll~~-gadin~~~~   95 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATD-DAGQMCIHIAAEKHEAQ-LAAEIIDHLIEL-GADINAQEM   95 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccC-CCCCcHHHHHHHcCChH-HHHHHHHHHHHc-CCCCCCCCc
Confidence            4567899999999999999988542      12233333 47999999999887300 004788999987 556666674


Q ss_pred             -CCCcHHHHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCcCCC
Q 044439           78 -KGDTPLQVAAKFGHSDIVSVLIK-EAKSAQHGNEEPERGLK  117 (121)
Q Consensus        78 -~~~tpL~~a~~~g~~~~~~~Ll~-~ga~~~~~~~~~~~~~~  117 (121)
                       .|.||||+|+..++.+++++|+. .|++++..+..+..+..
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~  137 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFE  137 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHH
Confidence             89999999999999999999998 59999988877766543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.76  E-value=1e-17  Score=108.49  Aligned_cols=100  Identities=21%  Similarity=0.181  Sum_probs=81.6

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||+|+..|+.++++.|++.+.....  . .+.||||+|+..+     +.++++.|+.. +...+..+..|.|||
T Consensus        28 ~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~--~-d~~TpLh~Aa~~g-----~~eiV~lLL~~-Gadvn~~d~~G~TpL   98 (284)
T PHA02791         28 VHGHSALYYAIADNNVRLVCTLLNAGALKNL--L-ENEFPLHQAATLE-----DTKIVKILLFS-GMDDSQFDDKGNTAL   98 (284)
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC--C-CCCCHHHHHHHCC-----CHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            4577899999999999999999887543322  2 4689999999888     58999999987 666777889999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      |+|+..|+.+++++|++.|++++.....+
T Consensus        99 h~Aa~~g~~eivk~Ll~~gadin~~~~~g  127 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKNWRLMFYGKTG  127 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccCCCC
Confidence            99999999999999999999887655443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.8e-18  Score=109.94  Aligned_cols=105  Identities=21%  Similarity=0.224  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      .-+|||+|++.|+..+++.|++.++.....+. ...||||+|+.+|     +.++|+.|++. ..+++..+..|+||||+
T Consensus        34 gfsplhwaakegh~aivemll~rgarvn~tnm-gddtplhlaaahg-----hrdivqkll~~-kadvnavnehgntplhy  106 (448)
T KOG0195|consen   34 GFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM-GDDTPLHLAAAHG-----HRDIVQKLLSR-KADVNAVNEHGNTPLHY  106 (448)
T ss_pred             CcchhhhhhhcccHHHHHHHHhcccccccccC-CCCcchhhhhhcc-----cHHHHHHHHHH-hcccchhhccCCCchhh
Confidence            44789999999999999999999776655544 5679999999999     59999999998 77888999999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      |+..|...+.+-|+..||.+++-+..|..+..
T Consensus       107 acfwgydqiaedli~~ga~v~icnk~g~tpld  138 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLISCGAAVNICNKKGMTPLD  138 (448)
T ss_pred             hhhhcHHHHHHHHHhccceeeecccCCCCchh
Confidence            99999999999999999999999988877643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.2e-17  Score=113.37  Aligned_cols=98  Identities=20%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..||||.|+..|+.++++.|++.+........ .|.||||+|+..+     ..+++++|++. +...+..+..|.||||+
T Consensus       102 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~~-----~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~  174 (413)
T PHA02875        102 GMTPLHLATILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMMG-----DIKGIELLIDH-KACLDIEDCCGCTPLII  174 (413)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHhc-CCCCCCCCCCCCCHHHH
Confidence            45677777777777777777776554444333 6777787777776     47777777776 45556667778888888


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      |+..|+.+++++|++.|++++..+.
T Consensus       175 A~~~g~~eiv~~Ll~~ga~~n~~~~  199 (413)
T PHA02875        175 AMAKGDIAICKMLLDSGANIDYFGK  199 (413)
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcCCC
Confidence            8888888888888888877765544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=1.2e-17  Score=108.54  Aligned_cols=110  Identities=10%  Similarity=0.090  Sum_probs=91.9

Q ss_pred             CCCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhh---cCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcc-cC
Q 044439            2 NPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLT---AQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKV-NA   77 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~---~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~   77 (121)
                      +..+..++||.|+..|+.++++.|++.+.......   +..|.||||+|+..+     +.+++++|+.. +++++.. +.
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~-----~~eivklLL~~-GADVN~~~~~  102 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCD-----NDDAAKLLIRY-GADVNRYAEE  102 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCcCcccCC
Confidence            34567788999999999999999999876655432   237999999999988     69999999998 6677764 45


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        78 ~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      .|.||||+|+..|+.+++++|++.|++++..+..+..+..
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~  142 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIE  142 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            7999999999999999999999999999988777665543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.74  E-value=8.1e-18  Score=115.39  Aligned_cols=103  Identities=18%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      -+.||+||.++++++++.|+++++..+...-..+.||||||++.|     ++.++..|++. +++++.+|..|.+|||+|
T Consensus        79 ~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G-----~~~vv~lLlqh-GAdpt~~D~~G~~~lHla  152 (600)
T KOG0509|consen   79 VTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG-----HISVVDLLLQH-GADPTLKDKQGLTPLHLA  152 (600)
T ss_pred             ccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC-----cHHHHHHHHHc-CCCCceecCCCCcHHHHH
Confidence            345666666666666666666554444433224556666666655     46666666665 445555566666666666


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ++.|+.-++-+|+..|++++..+..+.++
T Consensus       153 ~~~~~~~~vayll~~~~d~d~~D~~grTp  181 (600)
T KOG0509|consen  153 AQFGHTALVAYLLSKGADIDLRDNNGRTP  181 (600)
T ss_pred             HHhCchHHHHHHHHhcccCCCcCCCCCCH
Confidence            66666666666666666555555544443

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.73  E-value=1.9e-17  Score=112.36  Aligned_cols=104  Identities=13%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..+|||.|+..|+.+.++.|++.+..........|.||||+|+..+     +.+++++|++. +++.+..+..|.||||+
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~-----~~~iv~~Ll~~-gad~~~~~~~g~tpLh~  141 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK-----KLDIMKLLIAR-GADPDIPNTDKFSPLHL  141 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhC-----CHHHHHHHHhC-CCCCCCCCCCCCCHHHH
Confidence            3455666666666666666655433222222235777888877776     47778888777 55666667777888888


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+..|+.+++++|+++|++++..+..+..+
T Consensus       142 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~Tp  171 (413)
T PHA02875        142 AVMMGDIKGIELLIDHKACLDIEDCCGCTP  171 (413)
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            888888888888888887777666555443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.73  E-value=1.7e-17  Score=113.29  Aligned_cols=105  Identities=18%  Similarity=0.200  Sum_probs=90.0

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||+|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus       122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-~g~tpLh~A~~~~-----~~~iv~~Ll~~-g~~~n~~~~~g~tpL  194 (434)
T PHA02874        122 AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD-NGCYPIHIAIKHN-----FFDIIKLLLEK-GAYANVKDNNGESPL  194 (434)
T ss_pred             CCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHCC-----cHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            3467899999999999999999988665555444 8999999999988     69999999998 666677899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+|+..|+.+++++|++.|++++..+..+..+
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~Tp  226 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGNHIMNKCKNGFTP  226 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH
Confidence            99999999999999999999987776655543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.73  E-value=1.2e-17  Score=114.51  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             HHHHHHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc-CCCCcHHHHH
Q 044439            9 NLFKAAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN-AKGDTPLQVA   86 (121)
Q Consensus         9 ~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~tpL~~a   86 (121)
                      +++.|++.|+++.|+.+++. +.....-+. .|.++||||+..+     +++++++|+++ +.+++..+ ..+.||||||
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~-~g~tlLHWAAiNN-----rl~v~r~li~~-gadvn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDR-EGVTLLHWAAINN-----RLDVARYLISH-GADVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCc-CCccceeHHHHcC-----cHHHHHHHHHc-CCCccccCCCCCCCcchHH
Confidence            34445555555555555544 222222222 4555555555544     35555555554 22333333 3444555555


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +++|+..++.+|+++||++++.+..|....
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~l  149 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPL  149 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHH
Confidence            555555555555555555555554444433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=1.3e-17  Score=99.59  Aligned_cols=108  Identities=13%  Similarity=0.095  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHcCC-hHHHHHH--h-hhh-hhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc-C
Q 044439            4 VSIHPNLFKAAAAGN-AEPFKKD--I-RRD-EIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN-A   77 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~-~~~~~~l--l-~~~-~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~   77 (121)
                      ....||||+|+..|+ .+.+...  + ... ......+. .|.||||+|+..+..  ...++++.|+.. +.+.+.++ .
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~--~~~e~v~~Ll~~-gadin~~~~~   90 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNR-HGKQCVHIVSNPDKA--DPQEKLKLLMEW-GADINGKERV   90 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcC-CCCEEEEeecccCch--hHHHHHHHHHHc-CCCccccCCC
Confidence            456677888777776 3444322  1 111 11222233 677777777766520  012456666666 44555555 3


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHh-CCCCCCCCCCCCcC
Q 044439           78 KGDTPLQVAAKFGHSDIVSVLIKE-AKSAQHGNEEPERG  115 (121)
Q Consensus        78 ~~~tpL~~a~~~g~~~~~~~Ll~~-ga~~~~~~~~~~~~  115 (121)
                      .|.||||+|+..|+.+++++|+.. |++++..+..+.++
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            677777777777777777777763 67766666555544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.73  E-value=2.1e-17  Score=116.16  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=79.5

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhh--cccCCCC
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLL--KVNAKGD   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~   80 (121)
                      .+-.+|||.||.+|++.+|+.|++. +.......+..|.||||+|+..+     +..+++.|+.+++...+  ..|.+|+
T Consensus       304 ~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g-----H~~v~qlLl~~GA~~~~~~e~D~dg~  378 (929)
T KOG0510|consen  304 KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG-----HDRVVQLLLNKGALFLNMSEADSDGN  378 (929)
T ss_pred             CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC-----HHHHHHHHHhcChhhhcccccccCCc
Confidence            3455677777777777777777773 22222233346788888888777     58888888888544443  4488889


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      ||||+|+..|+..++++|+.+||++...+..+.+...
T Consensus       379 TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  379 TALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             hhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            9999999999999999999999988877777766644

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=7.4e-17  Score=86.44  Aligned_cols=95  Identities=18%  Similarity=0.169  Sum_probs=80.7

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      +..+.++.++|.++.|+..+..+..... .- .|++|||+|+-+|     ..+++++++.. +..++..|+.|.|||.-|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~-~~-ggR~plhyAAD~G-----Ql~ilefli~i-GA~i~~kDKygITPLLsA   74 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNE-IY-GGRTPLHYAADYG-----QLSILEFLISI-GANIQDKDKYGITPLLSA   74 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHH-Hh-CCcccchHhhhcc-----hHHHHHHHHHh-ccccCCccccCCcHHHHH
Confidence            4568899999999999999887522222 22 7899999999888     69999999998 777888899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      ++.||..|+++|++.||+-....
T Consensus        75 vwEGH~~cVklLL~~GAdrt~~~   97 (117)
T KOG4214|consen   75 VWEGHRDCVKLLLQNGADRTIHA   97 (117)
T ss_pred             HHHhhHHHHHHHHHcCcccceeC
Confidence            99999999999999999855433

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.72  E-value=4.3e-17  Score=112.49  Aligned_cols=98  Identities=15%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      +.+|||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.++++.|+.. +...+.++..|.||||+
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~-~g~tpLh~A~~~~-----~~~iv~~Ll~~-ga~in~~d~~g~TpLh~  240 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYGANVNIPDK-TNNSPLHHAVKHY-----NKPIVHILLEN-GASTDARDKCGNTPLHI  240 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhC-----CHHHHHHHHHc-CCCCCCCCCCCCCHHHH
Confidence            67899999999999999999988665544444 7899999999888     58999999988 66777889999999999


Q ss_pred             HHHh-CCHHHHHHHHHhCCCCCCCCC
Q 044439           86 AAKF-GHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        86 a~~~-g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      |+.. ++.+++++|+++|++++....
T Consensus       241 A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        241 SVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             HHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            9865 688999999999998887653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.3e-16  Score=99.63  Aligned_cols=98  Identities=17%  Similarity=0.206  Sum_probs=37.8

Q ss_pred             CHHHHHHHHcC--ChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            7 HPNLFKAAAAG--NAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         7 ~~~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      .||||.|+..+  +.++++.|++.+..........|.||||+|+....  .+..+++++|++. +.+++..+..|.||||
T Consensus        52 ~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~--~~~~eiv~~Ll~~-gadin~~d~~G~TpLh  128 (209)
T PHA02859         52 ETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNK--NVEPEILKILIDS-GSSITEEDEDGKNLLH  128 (209)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCc--cccHHHHHHHHHC-CCCCCCcCCCCCCHHH
Confidence            34444444422  44444444444332222221134444444432110  0023444444443 3333334444444444


Q ss_pred             HHHH--hCCHHHHHHHHHhCCCCCC
Q 044439           85 VAAK--FGHSDIVSVLIKEAKSAQH  107 (121)
Q Consensus        85 ~a~~--~g~~~~~~~Ll~~ga~~~~  107 (121)
                      +|+.  .++.+++++|++.|++++.
T Consensus       129 ~a~~~~~~~~~iv~~Li~~gadin~  153 (209)
T PHA02859        129 MYMCNFNVRINVIKLLIDSGVSFLN  153 (209)
T ss_pred             HHHHhccCCHHHHHHHHHcCCCccc
Confidence            4332  2334444444444444433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.71  E-value=1.2e-16  Score=96.56  Aligned_cols=106  Identities=12%  Similarity=0.075  Sum_probs=79.7

Q ss_pred             CHHHHHHHHcCChHHHH----HHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc-CCCCc
Q 044439            7 HPNLFKAAAAGNAEPFK----KDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN-AKGDT   81 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~----~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t   81 (121)
                      .++||.|+..|+++.+.    .+++.+......+. .|+||||+|+..+..  +...++++|+.. +...+.++ ..|.|
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-~g~t~Lh~Aa~~g~~--~~~~~i~~Ll~~-Gadin~~d~~~g~T   96 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-HGRQCTHMVAWYDRA--NAVMKIELLVNM-GADINARELGTGNT   96 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-CCCcHHHHHHHhCcc--CHHHHHHHHHHc-CCCCCCCCCCCCCc
Confidence            35799999999985444    44444443333344 799999999988731  023457889988 66677777 58999


Q ss_pred             HHHHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCcCC
Q 044439           82 PLQVAAKFGHSDIVSVLIK-EAKSAQHGNEEPERGL  116 (121)
Q Consensus        82 pL~~a~~~g~~~~~~~Ll~-~ga~~~~~~~~~~~~~  116 (121)
                      |||+|+..|+.+++++|+. .|++++..+..+..++
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL  132 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAY  132 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHH
Confidence            9999999999999999995 7999988777666554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=8e-17  Score=113.33  Aligned_cols=99  Identities=22%  Similarity=0.237  Sum_probs=87.6

Q ss_pred             CCCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHH-hCChhhhcccCCCC
Q 044439            2 NPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILE-ICPSLLLKVNAKGD   80 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~   80 (121)
                      ++...-||||+|+..|..+++..|+..+........ .+.+|||.|+++|     ++.+|+.|++ .+..+.+..|-.|.
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~-d~~spLH~AA~yg-----~~ntv~rLL~~~~~rllne~D~~g~  342 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNK-DEESPLHFAAIYG-----RINTVERLLQESDTRLLNESDLHGM  342 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCcccccCC-CCCCchHHHHHcc-----cHHHHHHHHhCcCccccccccccCC
Confidence            445667999999999999999999998776666665 8999999999999     7999999999 55566788899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSAQ  106 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~~  106 (121)
                      ||||+|+..||..++++|++.||...
T Consensus       343 tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  343 TPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             CchhhhhhcCHHHHHHHHHhcChhhh
Confidence            99999999999999999999999765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.69  E-value=3.6e-17  Score=119.50  Aligned_cols=111  Identities=23%  Similarity=0.226  Sum_probs=88.7

Q ss_pred             CCCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc
Q 044439            2 NPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT   81 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   81 (121)
                      +.+...+++|.++..+++..++.+++++......+. .+.||||.|+..+     +..+|++|+++ +.+++.++..|+|
T Consensus       503 ~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~-r~~TpLh~A~~~g-----~v~~VkfLLe~-gAdv~ak~~~G~T  575 (1143)
T KOG4177|consen  503 DAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTG-RGYTPLHVAVHYG-----NVDLVKFLLEH-GADVNAKDKLGYT  575 (1143)
T ss_pred             cchhccchhhhhhhhhhHHHHHHHhhcCCceehhcc-cccchHHHHHhcC-----CchHHHHhhhC-CccccccCCCCCC
Confidence            345566778888888888888777777555555444 7889999999888     58899999998 7777788899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           82 PLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        82 pL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |||.|+.+|+.+|+.+|+++||++|..+-.+..++.++
T Consensus       576 PLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  576 PLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             hhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence            99999999999999999999999988887777665443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.69  E-value=1.8e-17  Score=101.61  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      .+-|||.+|+.+|++++|++|++.+..+...-. ...++|++|++.+     .+++|+.|+.+ ..+++..|+.|-|||.
T Consensus       159 ~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk-~resALsLAt~gg-----ytdiV~lLL~r-~vdVNvyDwNGgTpLl  231 (296)
T KOG0502|consen  159 FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK-YRESALSLATRGG-----YTDIVELLLTR-EVDVNVYDWNGGTPLL  231 (296)
T ss_pred             cCchHhHHHHhcCchHHHHHHHHcCCChhhhhh-hhhhhHhHHhcCC-----hHHHHHHHHhc-CCCcceeccCCCceee
Confidence            356899999999999999999999887777666 6789999999999     49999999998 6778888999999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCc
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPER  114 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~  114 (121)
                      +|++.+|..|++.|+..||+++.-...|..
T Consensus       232 yAvrgnhvkcve~Ll~sGAd~t~e~dsGy~  261 (296)
T KOG0502|consen  232 YAVRGNHVKCVESLLNSGADVTQEDDSGYW  261 (296)
T ss_pred             eeecCChHHHHHHHHhcCCCcccccccCCc
Confidence            999999999999999999998876655543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.69  E-value=2.8e-16  Score=98.06  Aligned_cols=108  Identities=12%  Similarity=0.059  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHc---CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc
Q 044439            5 SIHPNLFKAAAA---GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT   81 (121)
Q Consensus         5 ~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   81 (121)
                      ...||||.|+..   ++.++++.|++.+......+. .|.||||+|+....   ++.+++++|+.. +..++.++..|.|
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~-~G~TpLh~a~~~~~---~~~~iv~~Li~~-gadin~~d~~g~t  160 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE-DGKNLLHMYMCNFN---VRINVIKLLIDS-GVSFLNKDFDNNN  160 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhcc---CCHHHHHHHHHc-CCCcccccCCCCc
Confidence            467899998764   478999999988666655555 89999999875321   158999999998 6677788999999


Q ss_pred             HHHH-HHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           82 PLQV-AAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        82 pL~~-a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      |||. ++..++.+++++|++.|++++..+..+.++..
T Consensus       161 ~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~  197 (209)
T PHA02859        161 ILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYD  197 (209)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            9995 56788999999999999999988887766543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1.7e-16  Score=109.49  Aligned_cols=105  Identities=18%  Similarity=0.104  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCC------CCHHHHHHhcCCCcccc--HHHHHHHHHhCChhhhccc
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTK------NTILHINITSRKRKNVS--TKFIEEILEICPSLLLKVN   76 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g------~t~lh~a~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~   76 (121)
                      ...||||.|+..|+.++++.|++.+........ .|      .|+||+|+..+     .  .+++++|+.. +...+..+
T Consensus       175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~-~~~~~~~~~t~l~~a~~~~-----~~~~~iv~~Ll~~-g~din~~d  247 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVIKFLLDNGADINAGDI-ETLLFTIFETPLHIAACYN-----EITLEVVNYLLSY-GVPINIKD  247 (480)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCC-CCCcHHHHHhHHHHHHHhC-----cCcHHHHHHHHHc-CCCCCCCC
Confidence            345667777777777777776666443333333 34      66777777665     4  7788888877 56667778


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           77 AKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        77 ~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      ..|.||||+|+..|+.+++++|++.|++++..+..|.++.
T Consensus       248 ~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl  287 (480)
T PHA03100        248 VYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL  287 (480)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Confidence            8899999999999999999999999998888777666554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.68  E-value=3.3e-16  Score=113.96  Aligned_cols=107  Identities=22%  Similarity=0.216  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCc--------------------------ccc
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRK--------------------------NVS   57 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~--------------------------~~~   57 (121)
                      ..+.||||.|+..|+.++++.|++.+......+. .|+||||+|+..++..                          .|+
T Consensus       556 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~-~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~  634 (823)
T PLN03192        556 SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA-NGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRND  634 (823)
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCC
Confidence            4567889999999999999888887555444444 7888888776655311                          124


Q ss_pred             HHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           58 TKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        58 ~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      .++++.|++. +.+.+..|..|.||||+|+..|+.+++++|+++|++++..+..+
T Consensus       635 ~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        635 LTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             HHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence            5666777776 56677889999999999999999999999999999988776554

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.68  E-value=2.5e-16  Score=112.73  Aligned_cols=107  Identities=16%  Similarity=0.144  Sum_probs=88.3

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ..+.||||.|+..|+.++++.|++.+........ .|.||||+|+..+.    ...+++.|+.. +...+.++..|.|||
T Consensus       373 ~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~-~g~T~Lh~A~~~~~----~~~~vk~Ll~~-gadin~~d~~G~TpL  446 (682)
T PHA02876        373 YCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ-KIGTALHFALCGTN----PYMSVKTLIDR-GANVNSKNKDLSTPL  446 (682)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCC-CCCchHHHHHHcCC----HHHHHHHHHhC-CCCCCcCCCCCChHH
Confidence            3467899999999999999999988665555555 78899999987653    35678888887 677888899999999


Q ss_pred             HHHHHhC-CHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           84 QVAAKFG-HSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        84 ~~a~~~g-~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      |+|+..| +.+++++|++.|++++..+..+..+.
T Consensus       447 h~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl  480 (682)
T PHA02876        447 HYACKKNCKLDVIEMLLDNGADVNAINIQNQYPL  480 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            9999876 68999999999999998887776654

>PHA02741 hypothetical protein; Provisional

Probab=99.66  E-value=8.8e-16  Score=92.97  Aligned_cols=97  Identities=16%  Similarity=0.078  Sum_probs=79.9

Q ss_pred             CCCCHHHHHHHHcCC----hHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCC
Q 044439            4 VSIHPNLFKAAAAGN----AEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKG   79 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~----~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~   79 (121)
                      ....||||.|+..|+    .++++.|+..+..........|.||||+|+..+     +.+++++|+...+...+..+..|
T Consensus        58 ~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~-----~~~iv~~Ll~~~g~~~~~~n~~g  132 (169)
T PHA02741         58 DAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRR-----DHDLAEWLCCQPGIDLHFCNADN  132 (169)
T ss_pred             CCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcC-----CHHHHHHHHhCCCCCCCcCCCCC
Confidence            457899999999999    477888877655443333237999999999988     59999999974356777889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCCCC
Q 044439           80 DTPLQVAAKFGHSDIVSVLIKEAKSA  105 (121)
Q Consensus        80 ~tpL~~a~~~g~~~~~~~Ll~~ga~~  105 (121)
                      .|||++|...++.+++++|+++++..
T Consensus       133 ~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        133 KSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.66  E-value=4.4e-16  Score=113.34  Aligned_cols=105  Identities=19%  Similarity=0.228  Sum_probs=83.9

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      .++++|+.||..|+.+.++.|++.+......+. .|.||||+|+..+     +.++++.|++. +++.+.+|..|+||||
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~-~G~TpLh~Aa~~g-----~~~~v~~Ll~~-gadin~~d~~G~TpL~  596 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDS-KGRTPLHIAASKG-----YEDCVLVLLKH-ACNVHIRDANGNTALW  596 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC-----hHHHHHHHHhc-CCCCCCcCCCCCCHHH
Confidence            467889999999999999999988666555555 8999999999998     69999999998 7778888999999998


Q ss_pred             HHHHhCCH-------------------------------HHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           85 VAAKFGHS-------------------------------DIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        85 ~a~~~g~~-------------------------------~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +|+..|+.                               ++++.|+++|++++..+..+.+++
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpL  659 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL  659 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            66655555                               455556777777777666665544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.66  E-value=4e-16  Score=92.62  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=81.1

Q ss_pred             HHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHh
Q 044439           10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKF   89 (121)
Q Consensus        10 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~   89 (121)
                      +.+|+..+....|+.|++..+......+..|.||||-|+..+     +.+++..|+.. ++....+...|+||||-|+..
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~-----h~div~~ll~~-gAn~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNG-----HLDIVHELLLS-GANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcC-----chHHHHHHHHc-cCCcccccccCccchhhhhcc
Confidence            668888999999999988744433334457899999999988     58999999887 667778888999999999999


Q ss_pred             CCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           90 GHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        90 g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      .+.+++..|+.+|++||+.......++
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpL  167 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPL  167 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhh
Confidence            999999999999998888765444433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=8.8e-17  Score=107.72  Aligned_cols=96  Identities=22%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      +||-.||..|+.++|++|++++......+. .|.|.||+||..|     +.+++++|++. +.+.+.++..|+|+||.++
T Consensus       119 tPLraACfDG~leivKyLvE~gad~~Ianr-hGhTcLmIa~ykG-----h~~I~qyLle~-gADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADPEIANR-HGHTCLMIACYKG-----HVDIAQYLLEQ-GADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCCccccc-CCCeeEEeeeccC-----chHHHHHHHHh-CCCcchhcccCchHHHhhh
Confidence            567777777777777777766555544444 6777777777777     47777777777 5666677777777777777


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCCC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      ..|+.+++++|+++|+.++.+..
T Consensus       192 EsG~vdivq~Ll~~ga~i~~d~~  214 (615)
T KOG0508|consen  192 ESGSVDIVQLLLKHGAKIDVDGH  214 (615)
T ss_pred             hcccHHHHHHHHhCCceeeecCC
Confidence            77777777777777776665543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.66  E-value=5.3e-16  Score=107.15  Aligned_cols=106  Identities=16%  Similarity=0.066  Sum_probs=87.7

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccC-CCCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNA-KGDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~~tp   82 (121)
                      ..+.||||.|+..|+.++++.|++.+......+. .|.||||+|+..+.    +.++++.|++. +...+..+. .|.||
T Consensus       199 ~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~-~g~TpLh~A~~~~~----~~~iv~~Ll~~-gadvn~~~~~~g~Tp  272 (477)
T PHA02878        199 KTNNSPLHHAVKHYNKPIVHILLENGASTDARDK-CGNTPLHISVGYCK----DYDILKLLLEH-GVDVNAKSYILGLTA  272 (477)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhcC----CHHHHHHHHHc-CCCCCccCCCCCCCH
Confidence            4567999999999999999999988665555555 89999999997531    58999999998 555665554 79999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      ||+|  .++.+++++|+++|++++..+..|.++.+
T Consensus       273 Lh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        273 LHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             HHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            9999  56789999999999999998887776644

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.66  E-value=7.8e-16  Score=105.20  Aligned_cols=45  Identities=16%  Similarity=0.083  Sum_probs=24.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcC
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSR   51 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~   51 (121)
                      ..+|||.|+..|+.++++.|++.+........ .|.+|||.|+..+
T Consensus        35 ~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~-~~~t~L~~A~~~~   79 (434)
T PHA02874         35 TTTPLIDAIRSGDAKIVELFIKHGADINHINT-KIPHPLLTAIKIG   79 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC
Confidence            44666777777777777666655433322222 3445555555444

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.66  E-value=4.5e-16  Score=92.88  Aligned_cols=98  Identities=13%  Similarity=0.048  Sum_probs=82.3

Q ss_pred             CCCCHHHHHHHHcCChH---HHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            4 VSIHPNLFKAAAAGNAE---PFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~---~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      ....++||.|+..|+.+   .++.|++.+......+...|.||||+|+..+     +.+++++|+...+...+..+..|.
T Consensus        53 ~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~-----~~~i~~~Ll~~~g~d~n~~~~~g~  127 (154)
T PHA02736         53 RHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQ-----NYELATWLCNQPGVNMEILNYAFK  127 (154)
T ss_pred             CCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhC-----CHHHHHHHHhCCCCCCccccCCCC
Confidence            45778999999999975   5777888766555444337999999999988     699999999754667788899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSAQ  106 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~~  106 (121)
                      ||||+|+..|+.+++++|+.+|++.+
T Consensus       128 tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        128 TPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999998754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.66  E-value=7e-16  Score=106.16  Aligned_cols=106  Identities=10%  Similarity=0.013  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHcC---ChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            4 VSIHPNLFKAAAAG---NAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      ....||||.|+..+   +.++++.|++.+......+. .|.||||+|+..+.    ..+++++|++. +...+..+..|.
T Consensus        45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~-~g~TpLh~A~~~~~----~~~iv~lLl~~-ga~in~~~~~g~  118 (471)
T PHA03095         45 EYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER-CGFTPLHLYLYNAT----TLDVIKLLIKA-GADVNAKDKVGR  118 (471)
T ss_pred             CCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCC----cHHHHHHHHHc-CCCCCCCCCCCC
Confidence            34678899999988   88999999888766655555 78999999998873    38888999888 666778888899


Q ss_pred             cHHHHHH--HhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           81 TPLQVAA--KFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        81 tpL~~a~--~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ||||+|+  ..++.+++++|++.|++++..+..+..+
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tp  155 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTP  155 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            9999998  5567889999999999888776666544

>PHA03095 ankyrin-like protein; Provisional

Probab=99.65  E-value=9.5e-16  Score=105.52  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=75.6

Q ss_pred             CCCHHHHHHHHc--CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            5 SIHPNLFKAAAA--GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         5 ~~~~~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      ...++||.++..  ++.++++.|++.+......+. .|.||||+|+..+..   ...++..++.. +.+.+.++..|.||
T Consensus       186 ~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~-~g~tpLh~Aa~~~~~---~~~~v~~ll~~-g~din~~d~~g~Tp  260 (471)
T PHA03095        186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM-LGNTPLHSMATGSSC---KRSLVLPLLIA-GISINARNRYGQTP  260 (471)
T ss_pred             CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCc---hHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence            345666666543  556666666665444444444 677888888776631   13456667776 66777788889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      ||+|+..|+.+++++|++.|++++..+..|.++..
T Consensus       261 Lh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~  295 (471)
T PHA03095        261 LHYAAVFNNPRACRRLIALGADINAVSSDGNTPLS  295 (471)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            99999999999999999999988887777766543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.64  E-value=1.9e-16  Score=103.12  Aligned_cols=110  Identities=13%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             CCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            3 PVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         3 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      +.++.|+||+++.++++++|+.|++.+.......+.-|.||+++++...-......++|..|++. +.+.-.-.+.|+|+
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~gQTA  343 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQHGQTA  343 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhhcchh
Confidence            35788999999999999999999986433222222356666666654332122235555555554 33333345566666


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      |++|+.+|+.++++.||.+||+||+...+|.
T Consensus       344 LMLAVSHGr~d~vk~LLacgAdVNiQDdDGS  374 (452)
T KOG0514|consen  344 LMLAVSHGRVDMVKALLACGADVNIQDDDGS  374 (452)
T ss_pred             hhhhhhcCcHHHHHHHHHccCCCccccCCcc
Confidence            6666666666666666666666665555443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.64  E-value=3.2e-16  Score=93.04  Aligned_cols=111  Identities=17%  Similarity=0.055  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..|+.++++.|+..++.....+. .||||||.||.-.     ..+|+.+|+++ +++++.......|||
T Consensus        95 ~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~-~GWTPLhSAckWn-----N~~va~~LLqh-gaDVnA~t~g~ltpL  167 (228)
T KOG0512|consen   95 EDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN-EGWTPLHSACKWN-----NFEVAGRLLQH-GADVNAQTKGLLTPL  167 (228)
T ss_pred             cccccHHHHHHhcCchHHHHHHHHccCCcccccc-cCccchhhhhccc-----chhHHHHHHhc-cCcccccccccchhh
Confidence            3456899999999999999999998887777777 8999999999766     58999999999 778888899999999


Q ss_pred             HHHHHhCCHHHHHHHH--HhCCCCCCCCCCCCcCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLI--KEAKSAQHGNEEPERGLKLPGR  121 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll--~~ga~~~~~~~~~~~~~~~~~~  121 (121)
                      |+|+...+......++  ..+.++...+..++....|++|
T Consensus       168 hlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  168 HLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             HHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            9999876655443333  3355555666666666655554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.64  E-value=2e-15  Score=104.16  Aligned_cols=102  Identities=18%  Similarity=0.260  Sum_probs=72.8

Q ss_pred             CCCHHHHHHH--HcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            5 SIHPNLFKAA--AAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         5 ~~~~~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      ...+|||.|+  ..|+.++++.|++.+........ .|.||||+|+..+.   ...+++++|++. +...+..+..|.||
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~---~~~~iv~~Ll~~-g~din~~d~~g~tp  179 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS-DGENLLHLYLESNK---IDLKILKLLIDK-GVDINAKNRYGYTP  179 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCC---ChHHHHHHHHHC-CCCcccccCCCCCH
Confidence            3567788888  78888888888776554444444 67888888887661   027778888877 55566667788888


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEE  111 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~  111 (121)
                      ||+|+..|+.+++++|+++|++++..+..
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  208 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAGDIE  208 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCCCCC
Confidence            88888888888888888888877655443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.7e-15  Score=102.48  Aligned_cols=106  Identities=12%  Similarity=0.009  Sum_probs=81.8

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhh-----cCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLT-----AQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT   81 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~-----~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   81 (121)
                      .++||.|+..++.++++.|++.+.......     ...+.+++|.++..+     +.+++++|+.. +++.+..+..|.|
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~-----~~eIve~LIs~-GADIN~kD~~G~T  223 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT-----VLEIYKLCIPY-IEDINQLDAGGRT  223 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC-----HHHHHHHHHhC-cCCcCcCCCCCCC
Confidence            467788887788888887777653211111     013567777777666     58999999998 6678888999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           82 PLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        82 pL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      |||+|+..|+.+++++|++.|++++..+..|..+++.
T Consensus       224 pLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~  260 (437)
T PHA02795        224 LLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV  260 (437)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            9999999999999999999999999988877766543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.63  E-value=4.2e-16  Score=104.53  Aligned_cols=108  Identities=24%  Similarity=0.244  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            3 PVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         3 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      +....+||-.|+..|++++|+.|+..+...+..+. ...|||..||.-|     +.+++++|+++ +.+....|+.|.|.
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~-TNStPLraACfDG-----~leivKyLvE~-gad~~IanrhGhTc  153 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTR-TNSTPLRAACFDG-----HLEIVKYLVEH-GADPEIANRHGHTC  153 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCccccccc-cCCccHHHHHhcc-----hhHHHHHHHHc-CCCCcccccCCCee
Confidence            45677889999999999999999998754444444 6779999999877     69999999998 77788889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      |++|+..||.+++++|++.|+++|.++..|...++
T Consensus       154 LmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH  188 (615)
T KOG0508|consen  154 LMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALH  188 (615)
T ss_pred             EEeeeccCchHHHHHHHHhCCCcchhcccCchHHH
Confidence            99999999999999999999999999888776544

>PHA02946 ankyin-like protein; Provisional

Probab=99.63  E-value=3.4e-15  Score=102.34  Aligned_cols=101  Identities=12%  Similarity=0.019  Sum_probs=55.7

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...||||+|+..|+.++++.|++.+......+. .|.||||+|+..+.   +..++++.|++.+..+....+..|.|||+
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~-~g~TpLh~A~~~~~---~~~e~v~lLl~~Gadin~~~d~~g~tpL~  146 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDK-QHKTPLYYLSGTDD---EVIERINLLVQYGAKINNSVDEEGCGPLL  146 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCC---chHHHHHHHHHcCCCcccccCCCCCcHHH
Confidence            456778888888888877777776554444333 67777777765431   12555666666532222223445555554


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                       |+..|+.+++++|++.|++++..+.
T Consensus       147 -aa~~~~~~vv~~Ll~~gad~~~~d~  171 (446)
T PHA02946        147 -ACTDPSERVFKKIMSIGFEARIVDK  171 (446)
T ss_pred             -HHHCCChHHHHHHHhccccccccCC
Confidence             3334445555555555544444333

>PHA02795 ankyrin-like protein; Provisional

Probab=99.62  E-value=2.8e-15  Score=101.39  Aligned_cols=95  Identities=25%  Similarity=0.178  Sum_probs=83.2

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      +++|.|+..++.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. ++..+.++..|.||||+|+
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~-~G~TpLh~Aa~~g-----~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa  262 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDA-GGRTLLYRAIYAG-----YIDLVSWLLEN-GANVNAVMSNGYTCLDVAV  262 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCcCCC-CCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCCcCCCCCCHHHHHH
Confidence            578889999999999999998766655555 8999999999998     69999999998 6778888999999999999


Q ss_pred             HhC--------CHHHHHHHHHhCCCCCCCC
Q 044439           88 KFG--------HSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        88 ~~g--------~~~~~~~Ll~~ga~~~~~~  109 (121)
                      ..|        +.+++++|+++|++++...
T Consensus       263 ~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        263 DRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             HcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            988        4699999999999887544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.60  E-value=5.7e-15  Score=105.84  Aligned_cols=102  Identities=17%  Similarity=0.121  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHcC-ChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            6 IHPNLFKAAAAG-NAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         6 ~~~~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      +.||||.|+..| +.+.++.|+..+........ .|.||||+|+..+.    ..+++..|+.. +...+.++..|.||||
T Consensus       307 g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~-~g~TpLh~A~~~~~----~~~iv~lLl~~-gadin~~d~~G~TpLh  380 (682)
T PHA02876        307 GETPLYLMAKNGYDTENIRTLIMLGADVNAADR-LYITPLHQASTLDR----NKDIVITLLEL-GANVNARDYCDKTPIH  380 (682)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHHcCCCCCCccc-CCCcHHHHHHHhCC----cHHHHHHHHHc-CCCCccCCCCCCCHHH
Confidence            445566666555 35555555554333333222 56666666665432    35666666666 5666677788888888


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      +|+..|+.+++++|+++|++++..+..+.
T Consensus       381 ~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~  409 (682)
T PHA02876        381 YAAVRNNVVIINTLLDYGADIEALSQKIG  409 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCC
Confidence            88888888888888888877766555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.60  E-value=1.2e-14  Score=103.78  Aligned_cols=99  Identities=20%  Similarity=0.243  Sum_probs=84.9

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      ..|+.|+..|+.+.++.|++.+......+. .|.||||+|+..+     +.+++++|+.. +.+.+..+..|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~-~G~TpLh~Aa~~g-----~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDY-DGRTPLHIACANG-----HVQVVRVLLEF-GADPTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCcHHHHHHHCC-----CHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence            358899999999999999988665555544 8999999999998     69999999998 6777888999999999999


Q ss_pred             HhCCHHHHHHHHHh-------CCCCCCCCCCCC
Q 044439           88 KFGHSDIVSVLIKE-------AKSAQHGNEEPE  113 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~-------ga~~~~~~~~~~  113 (121)
                      ..|+.+++++|+++       |++++..+..+.
T Consensus       157 ~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~  189 (664)
T PTZ00322        157 ENGFREVVQLLSRHSQCHFELGANAKPDSFTGK  189 (664)
T ss_pred             HCCcHHHHHHHHhCCCcccccCCCCCccccCCC
Confidence            99999999999999       777766655443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.59  E-value=7.2e-15  Score=105.20  Aligned_cols=112  Identities=15%  Similarity=0.078  Sum_probs=83.8

Q ss_pred             CCCCHHHHHHHHcCCh--HHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcC------------------------------
Q 044439            4 VSIHPNLFKAAAAGNA--EPFKKDIRRDEIESLLTAQTKNTILHINITSR------------------------------   51 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~--~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~------------------------------   51 (121)
                      ..+.||||.|+..|+.  ++++.|++.++.....+. .|.||||+|+...                              
T Consensus       210 ~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~  288 (764)
T PHA02716        210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV-NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSY  288 (764)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHH
Confidence            4567899999999854  889999988766655555 7899999764210                              


Q ss_pred             --CCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHH--hCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           52 --KRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAK--FGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        52 --~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~--~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                        ....|+.++++.|++. +...+.++..|.||||+|+.  .++.+++++|++.|++++..+..+..+++
T Consensus       289 i~AA~~g~leiVklLLe~-GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        289 ITLARNIDISVVYSFLQP-GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             HHHHHcCCHHHHHHHHhC-CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHH
Confidence              0012357788888887 66677789999999998764  46789999999999999888777766543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.58  E-value=1.6e-14  Score=102.92  Aligned_cols=107  Identities=17%  Similarity=0.048  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHc---CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCC---------------------------
Q 044439            4 VSIHPNLFKAAAA---GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKR---------------------------   53 (121)
Q Consensus         4 ~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~---------------------------   53 (121)
                      ....+|||.|+..   |+.++++.|++.+........ .|.||||+|+..++.                           
T Consensus        30 ~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~-~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~  108 (661)
T PHA02917         30 QFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNW-RQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSY  108 (661)
T ss_pred             CCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCC-CCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHH
Confidence            4567899997555   889999999998765554444 799999998875531                           


Q ss_pred             ---ccccHHHHHHHHHhCChhhhcccCCCCcHHHHH--HHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           54 ---KNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA--AKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        54 ---~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a--~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                         ..++.+++++|++. +.+++..+..|.|||+.+  +..|+.+++++|+++||+++.....+
T Consensus       109 ~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             HHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence               12356888999988 777888899999999954  45789999999999999998655433

>PHA02798 ankyrin-like protein; Provisional

Probab=99.57  E-value=1.6e-14  Score=100.19  Aligned_cols=45  Identities=18%  Similarity=0.131  Sum_probs=39.3

Q ss_pred             hcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           73 LKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        73 ~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      +.+|..|.||||+|+..|+.+++++|++.||+++..+..|.++++
T Consensus       252 N~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        252 NQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             CCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHH
Confidence            446778999999999999999999999999999998887776654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.57  E-value=1.9e-14  Score=71.37  Aligned_cols=54  Identities=33%  Similarity=0.404  Sum_probs=44.1

Q ss_pred             CCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHH
Q 044439           40 KNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLI   99 (121)
Q Consensus        40 g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll   99 (121)
                      |.|+||+|++.+     +.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g-----~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSG-----NLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT------HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhC-----CHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999988     69999999998 6777888999999999999999999999986

...

>PHA02798 ankyrin-like protein; Provisional

Probab=99.57  E-value=2e-14  Score=99.71  Aligned_cols=102  Identities=15%  Similarity=0.052  Sum_probs=83.6

Q ss_pred             CCCCHHHHHHHHc-----CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCC
Q 044439            4 VSIHPNLFKAAAA-----GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAK   78 (121)
Q Consensus         4 ~~~~~~l~~a~~~-----g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (121)
                      ..+.||||.++..     +..++++.|++.+......+. .|.||||+|+..+.  .++.+++++|++. +++.+..+..
T Consensus        69 ~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~-~G~TpLh~a~~~~~--~~~~~iv~~Ll~~-Gadvn~~d~~  144 (489)
T PHA02798         69 NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS-DGETPLYCLLSNGY--INNLEILLFMIEN-GADTTLLDKD  144 (489)
T ss_pred             CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCC-CcCcHHHHHHHcCC--cChHHHHHHHHHc-CCCccccCCC
Confidence            4577899988764     668999999998776666555 79999999997652  1257899999998 6677888999


Q ss_pred             CCcHHHHHHHhCC---HHHHHHHHHhCCCCCCCC
Q 044439           79 GDTPLQVAAKFGH---SDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        79 ~~tpL~~a~~~g~---~~~~~~Ll~~ga~~~~~~  109 (121)
                      |.||||+|+..++   .+++++|++.|++++..+
T Consensus       145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~  178 (489)
T PHA02798        145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN  178 (489)
T ss_pred             CCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence            9999999999888   899999999999887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.57  E-value=3.3e-14  Score=92.66  Aligned_cols=90  Identities=19%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..++.++++.|++.++.........|.||||+|+..+     +.++++.|+.. +.+.+..+..|.|||
T Consensus        68 ~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~-----~~eivklLL~~-GAdin~kd~~G~TpL  141 (300)
T PHA02884         68 NSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG-----CLKCLEILLSY-GADINIQTNDMVTPI  141 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            467899999999999999999999877665543336999999999888     59999999998 677788899999999


Q ss_pred             HHHHHhCCHHHHHHHH
Q 044439           84 QVAAKFGHSDIVSVLI   99 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll   99 (121)
                      ++|+..++.+++.++.
T Consensus       142 ~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        142 ELALMICNNFLAFMIC  157 (300)
T ss_pred             HHHHHhCChhHHHHhc
Confidence            9999988777665554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.57  E-value=1.8e-14  Score=100.05  Aligned_cols=112  Identities=16%  Similarity=0.069  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHc--CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCCh------------
Q 044439            5 SIHPNLFKAAAA--GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPS------------   70 (121)
Q Consensus         5 ~~~~~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~------------   70 (121)
                      .+.||||.|+..  ++.++++.|++.+..........|.||||++++.+. ..++.+++++|++.+..            
T Consensus       144 ~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~-~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l  222 (494)
T PHA02989        144 RGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDI-DVISIKVIKYLIKKGVNIETNNNGSESVL  222 (494)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhccc-ccccHHHHHHHHhCCCCccccCCccccHH
Confidence            355677766543  466777777766544333222356777776655431 11246777777776321            


Q ss_pred             -------------------------hhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           71 -------------------------LLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        71 -------------------------~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                                               +.+.+|..|.||||+|+..|+.+++++|++.|++++..+..|.++++
T Consensus       223 ~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~  294 (494)
T PHA02989        223 ESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLT  294 (494)
T ss_pred             HHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence                                     12345677999999999999999999999999999988887766544

>PHA02946 ankyin-like protein; Provisional

Probab=99.56  E-value=4.7e-14  Score=96.81  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=78.1

Q ss_pred             CHHHHHHH--HcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            7 HPNLFKAA--AAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         7 ~~~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      .+.||.++  ...+.++++.|++.+......+. .|.||||+|+..+     +.++++.|++. ++.++.+|..|.||||
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~G~TpLh~Aa~~g-----~~eiv~lLL~~-GAdin~~d~~g~TpLh  110 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDD-DGNYPLHIASKIN-----NNRIVAMLLTH-GADPNACDKQHKTPLY  110 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCC-CCCCHHHHHHHcC-----CHHHHHHHHHC-cCCCCCCCCCCCCHHH
Confidence            46788765  34567899999988766555555 8999999999998     69999999998 6777888999999999


Q ss_pred             HHHHhC--CHHHHHHHHHhCCCCCC
Q 044439           85 VAAKFG--HSDIVSVLIKEAKSAQH  107 (121)
Q Consensus        85 ~a~~~g--~~~~~~~Ll~~ga~~~~  107 (121)
                      +|+..+  ..+++++|+++|++++.
T Consensus       111 ~A~~~~~~~~e~v~lLl~~Gadin~  135 (446)
T PHA02946        111 YLSGTDDEVIERINLLVQYGAKINN  135 (446)
T ss_pred             HHHHcCCchHHHHHHHHHcCCCccc
Confidence            998765  47899999999999874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.56  E-value=2.5e-14  Score=102.45  Aligned_cols=108  Identities=12%  Similarity=0.029  Sum_probs=82.4

Q ss_pred             CCCCHHHHHHHH--cCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc
Q 044439            4 VSIHPNLFKAAA--AGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT   81 (121)
Q Consensus         4 ~~~~~~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   81 (121)
                      ..+.+|||.|+.  .++.++++.|++.+......+. .|.||||+|+..++.   ..++++.|++. +++++.++..|.|
T Consensus       175 ~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~-~G~TPLH~Aa~~g~~---~~eIVklLLe~-GADVN~kD~~G~T  249 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN-HLITPLHTYLITGNV---CASVIKKIIEL-GGDMDMKCVNGMS  249 (764)
T ss_pred             CCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCC---CHHHHHHHHHc-CCCCCCCCCCCCC
Confidence            457789998754  4678999999988665555544 789999999987731   25889999988 6677888999999


Q ss_pred             HHHHH-------------------------------------HHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           82 PLQVA-------------------------------------AKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        82 pL~~a-------------------------------------~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      |||.|                                     +..|+.+++++|++.|++++..+..+..++
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPL  321 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCL  321 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHH
Confidence            99864                                     345778888999999998887776665544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.55  E-value=1.3e-14  Score=106.41  Aligned_cols=93  Identities=19%  Similarity=0.154  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...||||.|+.+|+++.|++|++++......+. .|+||||.|+..+     +.+|+..|+++ +..++..+..|.|||+
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~-~G~TPLH~Aa~~G-----~~~i~~LLlk~-GA~vna~d~~g~TpL~  611 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDK-LGYTPLHQAAQQG-----HNDIAELLLKH-GASVNAADLDGFTPLH  611 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhhCCccccccCC-CCCChhhHHHHcC-----hHHHHHHHHHc-CCCCCcccccCcchhH
Confidence            355899999999999999999999877777665 8999999999999     59999999999 7778888999999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      .|++.|+.+++++|+..++.
T Consensus       612 iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  612 IAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHhcccchhhHHHhccCc
Confidence            99999999999999999987

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=1.9e-14  Score=94.03  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=79.8

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      +-.+|+|+.|+.+|.+++|+.|+.-+...+..++ .|.|+|++|+.+|     |.++++.|+....|+....|.+|.|+|
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHG-----hkEivklLLA~p~cd~sLtD~DgSTAl  411 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDD-DGSTALMCAAEHG-----HKEIVKLLLAVPSCDISLTDVDGSTAL  411 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccccC-CccHHHhhhhhhC-----hHHHHHHHhccCcccceeecCCCchhh
Confidence            3478899999999999999999988777766666 8999999999998     589999999888888888899999999


Q ss_pred             HHHHHhCCHHHHHHHHHh
Q 044439           84 QVAAKFGHSDIVSVLIKE  101 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~  101 (121)
                      .+|-..||.||..+|+.+
T Consensus       412 ~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  412 SIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhHHhcCchHHHHHHHHH
Confidence            999999999998888765

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=7.3e-14  Score=95.04  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=79.5

Q ss_pred             HHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHh
Q 044439           10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKF   89 (121)
Q Consensus        10 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~   89 (121)
                      |..|+.+|-+++|+.++.+..+...-++ .|.|+||-|+..+     +.++|+||+.+ +.+++..|.+|+||||.|+.-
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNd-EGITaLHNAiCag-----hyeIVkFLi~~-ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPND-EGITALHNAICAG-----HYEIVKFLIEF-GANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCc-cchhHHhhhhhcc-----hhHHHHHHHhc-CCcccCccCCCCchhhhhhhc
Confidence            6689999999999999887555555455 8999999999988     69999999999 778889999999999999999


Q ss_pred             CCHHHHHHHHHhCCCC
Q 044439           90 GHSDIVSVLIKEAKSA  105 (121)
Q Consensus        90 g~~~~~~~Ll~~ga~~  105 (121)
                      ++..+.+.|++.|+.|
T Consensus       627 Nnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAV  642 (752)
T ss_pred             CchHHHHHHHhccceE
Confidence            9999999999999876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.48  E-value=2.9e-14  Score=100.08  Aligned_cols=105  Identities=24%  Similarity=0.283  Sum_probs=91.4

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      -|.||.|+.+|+.++++.|++..+....... .|.+|||+|+..|     +.++++.++.. ....+..+..|.||||+|
T Consensus        50 fTalhha~Lng~~~is~llle~ea~ldl~d~-kg~~plhlaaw~g-----~~e~vkmll~q-~d~~na~~~e~~tplhla  122 (854)
T KOG0507|consen   50 FTLLHHAVLNGQNQISKLLLDYEALLDLCDT-KGILPLHLAAWNG-----NLEIVKMLLLQ-TDILNAVNIENETPLHLA  122 (854)
T ss_pred             hhHHHHHHhcCchHHHHHHhcchhhhhhhhc-cCcceEEehhhcC-----cchHHHHHHhc-ccCCCcccccCcCccchh
Confidence            3779999999999999999988776666665 7999999999998     58899999887 577888899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      +.+||.+++.+|+.+|++.-+.++..+...++
T Consensus       123 aqhgh~dvv~~Ll~~~adp~i~nns~~t~ldl  154 (854)
T KOG0507|consen  123 AQHGHLEVVFYLLKKNADPFIRNNSKETVLDL  154 (854)
T ss_pred             hhhcchHHHHHHHhcCCCccccCcccccHHHH
Confidence            99999999999999999988888877765543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=1.4e-12  Score=74.26  Aligned_cols=102  Identities=22%  Similarity=0.270  Sum_probs=83.7

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..++.+.++.++..+....... ..|.+++|.|+..+     ..++++.++.. +...+..+..+.||+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~-~~g~~~l~~a~~~~-----~~~~~~~ll~~-~~~~~~~~~~~~~~l   77 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNG-----HLEIVKLLLEK-GADVNARDKDGNTPL   77 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcC-----CHHHHHHHHHc-CCCccccCCCCCCHH
Confidence            346789999999999999999998755433333 37899999999988     58999999998 445566788999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      |+|+..++.+++++|+..+.+++..+..+
T Consensus        78 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~  106 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHGADVNARDKDG  106 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCcccCCCC
Confidence            99999999999999999997766555433

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.47  E-value=6e-13  Score=92.46  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHc---CChHHHHHHhhhhhhH-hhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhc-ccCCCC
Q 044439            6 IHPNLFKAAAA---GNAEPFKKDIRRDEIE-SLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLK-VNAKGD   80 (121)
Q Consensus         6 ~~~~l~~a~~~---g~~~~~~~ll~~~~~~-~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~   80 (121)
                      +.||||.|+..   ++.++++.|++.+... ...+. .|.||||+|+....   ++.++++.|++. +.+.+. .+..|.
T Consensus       108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~-~g~tpLh~a~~~~~---~~~~iv~~Ll~~-Gadi~~~~~~~g~  182 (494)
T PHA02989        108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS-RGYNLLHMYLESFS---VKKDVIKILLSF-GVNLFEKTSLYGL  182 (494)
T ss_pred             CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC-CCCCHHHHHHHhcc---CCHHHHHHHHHc-CCCccccccccCC
Confidence            44556555433   4456666666554433 22222 55666665543211   135556666655 333332 345556


Q ss_pred             cHHHHHHHhC----CHHHHHHHHHhCCCCCCCC
Q 044439           81 TPLQVAAKFG----HSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        81 tpL~~a~~~g----~~~~~~~Ll~~ga~~~~~~  109 (121)
                      ||||+|++.+    +.+++++|++.|++++..+
T Consensus       183 tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        183 TPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             ChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            6666555432    5566666666666555443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.46  E-value=4.5e-13  Score=95.63  Aligned_cols=102  Identities=12%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHH--hcCCCccccHHHHHHHHHhCChhhhccc---CCC---
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINI--TSRKRKNVSTKFIEEILEICPSLLLKVN---AKG---   79 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~--~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~---   79 (121)
                      +++|.|+..++.++++.|++.+......+. .|.||||.++  ..+     +.+++++|++. ++.++..+   ..|   
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~-~g~T~L~~~~a~~~~-----~~eivklLi~~-Ga~vn~~d~~~~~g~~~  177 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCE-NHRSVIENYVMTDDP-----VPEIIDLFIEN-GCSVLYEDEDDEYGYAY  177 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCC-CCccHHHHHHHccCC-----CHHHHHHHHHc-CCCcccccccccccccc
Confidence            556677778888888888877665555544 7999999654  344     69999999998 55554333   223   


Q ss_pred             --------CcHHHHHHH-----------hCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           80 --------DTPLQVAAK-----------FGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        80 --------~tpL~~a~~-----------~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                              .||||+|+.           .++.+++++|++.|++++..+..+.++.
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpL  233 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTAL  233 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHH
Confidence                    599999976           4689999999999999998887776654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.46  E-value=3.7e-13  Score=94.46  Aligned_cols=107  Identities=7%  Similarity=0.020  Sum_probs=84.9

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhc-CCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTA-QTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      ..++.|+..|+.++++.|++.++.....+. ..+.||||+|+....  .+..+++++++.. +++.+.++..|.||||.|
T Consensus       341 n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~--~~v~~IlklLIs~-GADIN~kD~~G~TPLh~A  417 (631)
T PHA02792        341 NKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHE--SDVLSILKLCKPY-IDDINKIDKHGRSILYYC  417 (631)
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhcc--HhHHHHHHHHHhc-CCccccccccCcchHHHH
Confidence            358899999999999999998766655444 124699998776542  0123467888888 667788899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      +..++.+++++|+++|++++..+..+..+..
T Consensus       418 a~~~n~eivelLLs~GADIN~kD~~G~TpL~  448 (631)
T PHA02792        418 IESHSVSLVEWLIDNGADINITTKYGSTCIG  448 (631)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            9999999999999999999988887766544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=1.4e-12  Score=81.19  Aligned_cols=110  Identities=22%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCC--hhhhcccCCCCcHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP--SLLLKVNAKGDTPL   83 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~tpL   83 (121)
                      ..++++.++..++.+.+..++..+........ .|.|++|+|+..+....++.++++.|+..+.  ......+..|.|||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            55789999999999999888887665544444 8999999999988322223899999999965  47778899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      |+|+..|+.+++++|++.|++++..+..+....
T Consensus       152 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l  184 (235)
T COG0666         152 HWAALNGDADIVELLLEAGADPNSRNSYGVTAL  184 (235)
T ss_pred             HHHHHcCchHHHHHHHhcCCCCcccccCCCcch
Confidence            999999999999999999998887765555443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.46  E-value=7.5e-13  Score=93.69  Aligned_cols=104  Identities=7%  Similarity=-0.007  Sum_probs=80.0

Q ss_pred             CCCHHHHHHHHcCC----hHHHHHHhhhhhh--HhhhhcCCCCCHHHH--HHh-cCC----CccccHHHHHHHHHhCChh
Q 044439            5 SIHPNLFKAAAAGN----AEPFKKDIRRDEI--ESLLTAQTKNTILHI--NIT-SRK----RKNVSTKFIEEILEICPSL   71 (121)
Q Consensus         5 ~~~~~l~~a~~~g~----~~~~~~ll~~~~~--~~~~~~~~g~t~lh~--a~~-~~~----~~~~~~~~~~~ll~~~~~~   71 (121)
                      .+.||||.|+..+.    .++++.|++.+..  ...... .|.||||.  ++. .+.    ......+++++|+.. +++
T Consensus       377 ~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~-~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GAD  454 (672)
T PHA02730        377 DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN-NGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDD  454 (672)
T ss_pred             CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccccc-CCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccc
Confidence            46799999998875    8999999998542  333333 79999984  232 210    000013568999998 777


Q ss_pred             hhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           72 LLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        72 ~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      ++.+|..|.||||+|+..++.+++++|+++||+++..+.
T Consensus       455 INakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        455 IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence            888999999999999999999999999999999998875

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.45  E-value=4.6e-14  Score=90.15  Aligned_cols=98  Identities=23%  Similarity=0.235  Sum_probs=80.1

Q ss_pred             HHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCC
Q 044439           13 AAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGH   91 (121)
Q Consensus        13 a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~   91 (121)
                      =+.+|+.-.|+..++. .......++ .|.+|||||+..|     +..+++.|+.. +..++..+.-..||||+|+.+||
T Consensus         7 wcregna~qvrlwld~tehdln~gdd-hgfsplhwaakeg-----h~aivemll~r-garvn~tnmgddtplhlaaahgh   79 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDD-HGFSPLHWAAKEG-----HVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGH   79 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccc-cCcchhhhhhhcc-----cHHHHHHHHhc-ccccccccCCCCcchhhhhhccc
Confidence            3455665555555554 334444455 8999999999888     69999999998 77778888888999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           92 SDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        92 ~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      .++++.|+++.+++|..++.|..+++
T Consensus        80 rdivqkll~~kadvnavnehgntplh  105 (448)
T KOG0195|consen   80 RDIVQKLLSRKADVNAVNEHGNTPLH  105 (448)
T ss_pred             HHHHHHHHHHhcccchhhccCCCchh
Confidence            99999999999999999999988765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.41  E-value=1.3e-13  Score=68.82  Aligned_cols=46  Identities=24%  Similarity=0.484  Sum_probs=18.1

Q ss_pred             hhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           70 SLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        70 ~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      .+.+..|..|.||||+|+..|+.+++++|++.|++++..+..+.++
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tp   52 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTP   52 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--H
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCH
Confidence            4445555566666666666666666666665566555555555443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.37  E-value=4.3e-12  Score=89.95  Aligned_cols=101  Identities=9%  Similarity=-0.039  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHcC---ChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCC-hhhhcccCCC
Q 044439            4 VSIHPNLFKAAAAG---NAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP-SLLLKVNAKG   79 (121)
Q Consensus         4 ~~~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~   79 (121)
                      ..+.||||+|+..|   +.++++.|++.++.....+. .|+||||+|+..++   ++.++++.|++.+. ...+..+..+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~-~G~TPLh~Aa~~~~---~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN-EGLTPLGVYSKRKY---VKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC-CCCChHHHHHHcCC---CcHHHHHHHHhcCCCCCcccccccC
Confidence            45779999999987   58999999988776665555 89999999887552   14889999998732 2234456678


Q ss_pred             CcHHHHHHH--hCCHHHHHHHHH-hCCCCCCC
Q 044439           80 DTPLQVAAK--FGHSDIVSVLIK-EAKSAQHG  108 (121)
Q Consensus        80 ~tpL~~a~~--~g~~~~~~~Ll~-~ga~~~~~  108 (121)
                      .+||+.++.  .++.+++++|+. .+++++..
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~  146 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN  146 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhh
Confidence            899988777  889999999997 55666544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=1e-12  Score=65.53  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             hcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439           36 TAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus        36 ~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      .+..|.||||+|+..+     +.+++++|++. +++.+.+|..|.|||++|
T Consensus        12 ~d~~G~T~LH~A~~~g-----~~~~v~~Ll~~-g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   12 QDKYGNTPLHWAARYG-----HSEVVRLLLQN-GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TTS--HHHHHHHHT------HHHHHHHHHC-T--TT---TTS--HHHH-
T ss_pred             cCCCCCcHHHHHHHcC-----cHHHHHHHHHC-cCCCCCCcCCCCCHHHhC
Confidence            3348999999999998     69999999966 888999999999999987

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.36  E-value=2.7e-12  Score=93.04  Aligned_cols=108  Identities=18%  Similarity=0.075  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhh-------------cCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChh
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLT-------------AQTKNTILHINITSRKRKNVSTKFIEEILEICPSL   71 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~-------------~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~   71 (121)
                      ...||||.|+..|+.++++.|++.+.......             ...|.+|||+|+..+     +.++++.+++. +++
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~-----~~~iv~lLl~~-gad  200 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG-----SPSIVALLSED-PAD  200 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhC-----CHHHHHHHhcC-Ccc
Confidence            36799999999999999999998765433211             025889999999988     69999999998 667


Q ss_pred             hhcccCCCCcHHHHHHHhC---------CHHHHHHHHHhCCCC-------CCCCCCCCcCCCC
Q 044439           72 LLKVNAKGDTPLQVAAKFG---------HSDIVSVLIKEAKSA-------QHGNEEPERGLKL  118 (121)
Q Consensus        72 ~~~~~~~~~tpL~~a~~~g---------~~~~~~~Ll~~ga~~-------~~~~~~~~~~~~~  118 (121)
                      .+..|..|+||||+|+..+         ...+.++++..++..       ++.+..+..+.++
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~  263 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL  263 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh
Confidence            7888999999999999886         334667777776654       4456666665544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.35  E-value=2.6e-12  Score=79.25  Aligned_cols=101  Identities=12%  Similarity=0.015  Sum_probs=79.8

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      +++.+++..-+.+.+..+...   .....++.|.|||.||+++|     ++++|++|++. +.+.....+.-.++|.+|.
T Consensus       131 s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G-----~i~vV~fLL~~-GAdp~~lgk~resALsLAt  201 (296)
T KOG0502|consen  131 SPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKG-----HIPVVQFLLNS-GADPDALGKYRESALSLAT  201 (296)
T ss_pred             ChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcC-----chHHHHHHHHc-CCChhhhhhhhhhhHhHHh
Confidence            566777766666665544332   22234458999999999999     69999999998 7778888889999999999


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      +.|..+++++|+.++.++|.....|-.++-
T Consensus       202 ~ggytdiV~lLL~r~vdVNvyDwNGgTpLl  231 (296)
T KOG0502|consen  202 RGGYTDIVELLLTREVDVNVYDWNGGTPLL  231 (296)
T ss_pred             cCChHHHHHHHHhcCCCcceeccCCCceee
Confidence            999999999999999999987766555443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.34  E-value=5.4e-12  Score=80.62  Aligned_cols=102  Identities=17%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ...+|..++-.++.+....|++.....+..++ .|.++|.+|+..|     ..+.++.+++.+..+....+..+.|||++
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~-sGMs~LahAaykG-----nl~~v~lll~~gaDvN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDP-SGMSVLAHAAYKG-----NLTLVELLLELGADVNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCC-CcccHHHHHHhcC-----cHHHHHHHHHhCCCcCcccccccccHHHH
Confidence            44689999999999999999987555566666 8999999999988     69999999999666566667788999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      |+..|+..+.++|++.|+....-|.-+.
T Consensus        86 AALSGn~dvcrllldaGa~~~~vNsvgr  113 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARMYLVNSVGR  113 (396)
T ss_pred             HHHcCCchHHHHHHhccCccccccchhh
Confidence            9999999999999999998766554433

>PF13606 Ank_3: Ankyrin repeat

Probab=99.29  E-value=7.4e-12  Score=54.40  Aligned_cols=30  Identities=33%  Similarity=0.585  Sum_probs=27.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCCCCCC
Q 044439           78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQH  107 (121)
Q Consensus        78 ~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~  107 (121)
                      +|+||||+|++.|+.+++++|++.|+++|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999998874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.29  E-value=1.3e-11  Score=61.11  Aligned_cols=53  Identities=21%  Similarity=0.168  Sum_probs=40.9

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEIL   65 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll   65 (121)
                      .++||+|+..|+.+++++|++.+......+ ..|.||||+|+..+     +.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d-~~g~t~lh~A~~~g-----~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQD-EDGRTPLHYAAKNG-----NIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT------HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcc-----CHHHHHHHC
Confidence            478999999999999999998865555554 48999999999998     699999885

...

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.28  E-value=7.5e-12  Score=85.13  Aligned_cols=102  Identities=22%  Similarity=0.251  Sum_probs=88.1

Q ss_pred             HHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHH
Q 044439            9 NLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAK   88 (121)
Q Consensus         9 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~   88 (121)
                      .+..|+..|+.+-+..++..+..+...+. +|.|++|-++.-.     +.+||.+++.+ +..++..+..++||||.|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~-DglTalhq~~id~-----~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNV-DGLTALHQACIDD-----NLEMVKFLVEN-GANVNAQDNEGWTPLHAAAS  115 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCC-ccchhHHHHHhcc-----cHHHHHHHHHh-cCCccccccccCCcchhhcc
Confidence            37789999999999999988665555555 8999999999877     59999999999 77788889999999999999


Q ss_pred             hCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           89 FGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        89 ~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      -|+..++.+|+.+||++..-|.++.-+..
T Consensus       116 cg~~~i~~~li~~gA~~~avNsdg~~P~d  144 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLAVNSDGNMPYD  144 (527)
T ss_pred             cccHHHHHHHHHhhhhhhhccCCCCCccc
Confidence            99999999999999998777766655543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.28  E-value=1.1e-11  Score=87.76  Aligned_cols=110  Identities=11%  Similarity=0.034  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhh------hc----------------CCCCCHHHHHHhcCCCccccHHHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLL------TA----------------QTKNTILHINITSRKRKNVSTKFIE   62 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~------~~----------------~~g~t~lh~a~~~~~~~~~~~~~~~   62 (121)
                      .++|+||.|+.+.+.++|..|++.+++....      ..                ..|..||.+||..+     +.+|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n-----q~eivr  257 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN-----QPEIVR  257 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcC-----CHHHHH
Confidence            4789999999999999999999865433322      11                13678999999888     699999


Q ss_pred             HHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCC--CCCCCCCCCcCCCCCC
Q 044439           63 EILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS--AQHGNEEPERGLKLPG  120 (121)
Q Consensus        63 ~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~--~~~~~~~~~~~~~~~~  120 (121)
                      .|++. +++++.+|..|+|-||..+.+-..++..+++++|++  ..+.|..+-++++++.
T Consensus       258 lLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  258 LLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             HHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH
Confidence            99997 888899999999999999999899999999999999  7888888888877653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.27  E-value=2.7e-11  Score=82.50  Aligned_cols=56  Identities=16%  Similarity=0.056  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHh
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEI   67 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~   67 (121)
                      +-|+||.++...+.++|+++++.+......+. .+|||+|.|+..+     ++.+++++++.
T Consensus        73 glTalhq~~id~~~e~v~~l~e~ga~Vn~~d~-e~wtPlhaaascg-----~~~i~~~li~~  128 (527)
T KOG0505|consen   73 GLTALHQACIDDNLEMVKFLVENGANVNAQDN-EGWTPLHAAASCG-----YLNIVEYLIQH  128 (527)
T ss_pred             cchhHHHHHhcccHHHHHHHHHhcCCcccccc-ccCCcchhhcccc-----cHHHHHHHHHh
Confidence            44667777777777777777766555544444 5677777666655     35455555443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.27  E-value=4.2e-11  Score=86.91  Aligned_cols=98  Identities=19%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             CCCHHHH-HHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCCh-----h----hhc
Q 044439            5 SIHPNLF-KAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPS-----L----LLK   74 (121)
Q Consensus         5 ~~~~~l~-~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~-----~----~~~   74 (121)
                      .+.+||| .|+..++.++++.|++.+.     .+..|.|+||.|+....  .+...++..+......     .    ...
T Consensus        51 ~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~--~~v~~ll~~l~~~~~~~~~~~~~~~~~~~  123 (743)
T TIGR00870        51 LGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYV--DAVEAILLHLLAAFRKSGPLELANDQYTS  123 (743)
T ss_pred             cchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccH--HHHHHHHHHHhhcccccCchhhhcccccc
Confidence            3557788 6667777777777766533     22367788887776321  0012223333332110     0    011


Q ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q 044439           75 VNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        75 ~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      ....|.||||+|+..|+.+++++|+++|++++...
T Consensus       124 ~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~  158 (743)
T TIGR00870       124 EFTPGITALHLAAHRQNYEIVKLLLERGASVPARA  158 (743)
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence            23469999999999999999999999999998653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.26  E-value=2.7e-11  Score=75.36  Aligned_cols=94  Identities=27%  Similarity=0.220  Sum_probs=81.3

Q ss_pred             CCCCCHHHHHHHHcCC-----hHHHHHHhhhhh--hHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcc
Q 044439            3 PVSIHPNLFKAAAAGN-----AEPFKKDIRRDE--IESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKV   75 (121)
Q Consensus         3 ~~~~~~~l~~a~~~g~-----~~~~~~ll~~~~--~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~   75 (121)
                      +..+.|+||.|+..++     .++++.|++.+.  ......+..|.||||+|+..+     +.+++..++.. +......
T Consensus       103 ~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~-----~~~~~~~ll~~-~~~~~~~  176 (235)
T COG0666         103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG-----DADIVELLLEA-GADPNSR  176 (235)
T ss_pred             cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcC-----chHHHHHHHhc-CCCCccc
Confidence            3567899999999999     999999999877  344443458999999999998     57999999998 6666777


Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHhC
Q 044439           76 NAKGDTPLQVAAKFGHSDIVSVLIKEA  102 (121)
Q Consensus        76 ~~~~~tpL~~a~~~g~~~~~~~Ll~~g  102 (121)
                      +..|.|++++|+..++.+++..++..+
T Consensus       177 ~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         177 NSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999975

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.23  E-value=3e-11  Score=53.74  Aligned_cols=32  Identities=41%  Similarity=0.676  Sum_probs=29.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q 044439           78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        78 ~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      +|.||||+|+..|+.+++++|+++|++++..+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58999999999999999999999999988764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.23  E-value=1.5e-11  Score=86.83  Aligned_cols=90  Identities=22%  Similarity=0.255  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      .-.|||+|++.|+.+.+++++.........+. .|.||||++++++     +.+++.+|++. +.+...+|..+.|+|.+
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~na~~~-e~~tplhlaaqhg-----h~dvv~~Ll~~-~adp~i~nns~~t~ldl  154 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILNAVNI-ENETPLHLAAQHG-----HLEVVFYLLKK-NADPFIRNNSKETVLDL  154 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCCcccc-cCcCccchhhhhc-----chHHHHHHHhc-CCCccccCcccccHHHH
Confidence            34579999999999999999988655555555 7999999999999     59999999999 66677789999999999


Q ss_pred             HHHhCCHHHHHHHHHhC
Q 044439           86 AAKFGHSDIVSVLIKEA  102 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~g  102 (121)
                      |++.|..+++++|+...
T Consensus       155 A~qfgr~~Vvq~ll~~~  171 (854)
T KOG0507|consen  155 ASRFGRAEVVQMLLQKK  171 (854)
T ss_pred             HHHhhhhHHHHHHhhhc
Confidence            99999999999999884

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.21  E-value=6.1e-11  Score=64.40  Aligned_cols=62  Identities=21%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhc
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLK   74 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~   74 (121)
                      .+++||+|+..|+.+++++|++.+........ .|+||||+|+..+     +.+++++|++. +...+.
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~   87 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADINSQDK-NGNTALHYAAENG-----NLEIVKLLLEH-GADVNI   87 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST-TSSBHHHHHHHTT-----HHHHHHHHHHT-TT-TTS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccccccCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCC
Confidence            46899999999999999999998665545444 8999999999998     69999999998 555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.20  E-value=2.4e-10  Score=64.97  Aligned_cols=89  Identities=25%  Similarity=0.286  Sum_probs=74.3

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....+++|.|+..++.+.++.++..+....... ..+.+++|+|+..+     ..+++++|+.. +......+..+.||+
T Consensus        38 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~~-----~~~~~~~L~~~-~~~~~~~~~~~~~~l  110 (126)
T cd00204          38 NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD-KDGNTPLHLAARNG-----NLDVVKLLLKH-GADVNARDKDGRTPL  110 (126)
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHHHHHcC-----cHHHHHHHHHc-CCCCcccCCCCCCHH
Confidence            456789999999999999999998754333333 37889999999988     59999999987 555666788999999


Q ss_pred             HHHHHhCCHHHHHHHH
Q 044439           84 QVAAKFGHSDIVSVLI   99 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll   99 (121)
                      +.|...++.+++++|+
T Consensus       111 ~~~~~~~~~~~~~~Ll  126 (126)
T cd00204         111 HLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHhcCCHHHHHHhC
Confidence            9999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.16  E-value=1.7e-10  Score=78.45  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      +.-.||-++..|+.++...|+..++...+...+.|.||||.|+..|     ....++.|+-. ++++...|..|.||+.+
T Consensus       133 LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~G-----q~~Q~ElL~vY-GAD~~a~d~~GmtP~~~  206 (669)
T KOG0818|consen  133 LSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAG-----QILQAELLAVY-GADPGAQDSSGMTPVDY  206 (669)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhcc-----chhhhhHHhhc-cCCCCCCCCCCCcHHHH
Confidence            3446899999999999999999988888888889999999999998     57788888877 77888899999999999


Q ss_pred             HHHhCCHHHHHHHHHh
Q 044439           86 AAKFGHSDIVSVLIKE  101 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~  101 (121)
                      |...||.++.+.|++.
T Consensus       207 AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  207 ARQGGHHELAERLVEI  222 (669)
T ss_pred             HHhcCchHHHHHHHHH
Confidence            9999999998877654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.13  E-value=3.5e-10  Score=72.51  Aligned_cols=93  Identities=23%  Similarity=0.196  Sum_probs=79.1

Q ss_pred             CCCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc
Q 044439            2 NPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT   81 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   81 (121)
                      |+.+| ++|..|+..|+.+.++.+++.+.+.+..+...+.||||+|+..|     ..+++..|+.. +......|.-|.|
T Consensus        42 D~sGM-s~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG-----n~dvcrlllda-Ga~~~~vNsvgrT  114 (396)
T KOG1710|consen   42 DPSGM-SVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG-----NQDVCRLLLDA-GARMYLVNSVGRT  114 (396)
T ss_pred             CCCcc-cHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC-----CchHHHHHHhc-cCccccccchhhh
Confidence            34444 56999999999999999999987777766668899999999998     57888888887 7778888999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHh
Q 044439           82 PLQVAAKFGHSDIVSVLIKE  101 (121)
Q Consensus        82 pL~~a~~~g~~~~~~~Ll~~  101 (121)
                      +-..|+.-|+.+||.++=.+
T Consensus       115 AaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  115 AAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHHHHhcchHHHHHHhcc
Confidence            99999999999999876443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.12  E-value=5.2e-10  Score=77.27  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhh---hhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESL---LTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~---~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      +...|..|....|+..+-.|+.++.....   ....+|+|+||+||+.+     +..+.+.|+.. +.+...+|..|+|+
T Consensus       624 lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~g-----nVvl~QLLiWy-g~dv~~rda~g~t~  697 (749)
T KOG0705|consen  624 LGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKG-----NVVLAQLLIWY-GVDVMARDAHGRTA  697 (749)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhc-----chhHHHHHHHh-CccceecccCCchh
Confidence            34567889999999999999887433222   22257899999999988     68888999988 77788889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      |.+|.+.|..||+.+|+.+|+.
T Consensus       698 l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCC
Confidence            9999999999999999999984

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.11  E-value=7.4e-11  Score=79.75  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      .++++|++.|++..++.+.-.+......+- +.+|+||.|+.-|     +++++++|+..+..+.+.+|+.|+|||.-|.
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~Dy-D~RTaLHvAAaEG-----~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDY-DDRTALHVAAAEG-----HVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhccccccccc-ccchhheeecccC-----ceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            458899999999999998877554444333 6789999999888     5999999999988899999999999999999


Q ss_pred             HhCCHHHHHHHHHhCC
Q 044439           88 KFGHSDIVSVLIKEAK  103 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga  103 (121)
                      .++|.+++++|-++--
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999999988754

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=2e-10  Score=78.67  Aligned_cols=90  Identities=16%  Similarity=0.068  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      +=|+||.|++.|+.++|++|++.+...+..++ +||||||+|+...     ...+++.|++.++++....-.++.|+..-
T Consensus       583 GITaLHNAiCaghyeIVkFLi~~ganVNa~DS-dGWTPLHCAASCN-----nv~~ckqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  583 GITALHNAICAGHYEIVKFLIEFGANVNAADS-DGWTPLHCAASCN-----NVPMCKQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             chhHHhhhhhcchhHHHHHHHhcCCcccCccC-CCCchhhhhhhcC-----chHHHHHHHhccceEEeeecccccchhhh
Confidence            45789999999999999999998777666666 8999999999888     58999999999777766556678888876


Q ss_pred             H--HHhCCHHHHHHHHHh
Q 044439           86 A--AKFGHSDIVSVLIKE  101 (121)
Q Consensus        86 a--~~~g~~~~~~~Ll~~  101 (121)
                      +  .+.|...|.++|...
T Consensus       657 Cee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  657 CEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             cchhhhhHHHHHHHHHHH
Confidence            5  457888999998654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.09  E-value=6.8e-10  Score=78.43  Aligned_cols=94  Identities=13%  Similarity=0.078  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHcCChH---HHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            6 IHPNLFKAAAAGNAE---PFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~---~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      ..+|||.|+.....+   +++.+++.++.....+. .|.||||+|+..+     +.+++++|+.. ++..+..+..|.||
T Consensus       374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~-~G~TPLh~Aa~~~-----n~eivelLLs~-GADIN~kD~~G~Tp  446 (631)
T PHA02792        374 NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDK-HGRSILYYCIESH-----SVSLVEWLIDN-GADINITTKYGSTC  446 (631)
T ss_pred             ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccc-cCcchHHHHHHcC-----CHHHHHHHHHC-CCCCCCcCCCCCCH
Confidence            358899877766543   46777777655555555 7999999999888     69999999998 67788889999999


Q ss_pred             HHHHHH---h-------CCHHHHHHHHHhCCCCC
Q 044439           83 LQVAAK---F-------GHSDIVSVLIKEAKSAQ  106 (121)
Q Consensus        83 L~~a~~---~-------g~~~~~~~Ll~~ga~~~  106 (121)
                      |++|+.   .       ...+++++|+++|.+++
T Consensus       447 L~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        447 IGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            999976   2       22567899999987654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.08  E-value=3e-10  Score=61.27  Aligned_cols=75  Identities=12%  Similarity=-0.055  Sum_probs=61.3

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      +..+|||+|+-.|..+++++++..++.....+. .|-|||-.|+.-|     |..||++|+++ +.+......+|.+.+.
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDK-ygITPLLsAvwEG-----H~~cVklLL~~-GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDK-YGITPLLSAVWEG-----HRDCVKLLLQN-GADRTIHAPDGTALIE  105 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhccccCCccc-cCCcHHHHHHHHh-----hHHHHHHHHHc-CcccceeCCCchhHHh
Confidence            356899999999999999999988665555444 8999999999998     69999999999 6666667788876554


Q ss_pred             HH
Q 044439           85 VA   86 (121)
Q Consensus        85 ~a   86 (121)
                      .+
T Consensus       106 at  107 (117)
T KOG4214|consen  106 AT  107 (117)
T ss_pred             hc
Confidence            33

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.00  E-value=1.4e-09  Score=77.54  Aligned_cols=90  Identities=23%  Similarity=0.259  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCCh-hhhcccCCCCcHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPS-LLLKVNAKGDTPLQ   84 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~tpL~   84 (121)
                      ++-||..||+.+..++++.|++.++++...++ .|+|.||..+..-     ..++...+++.++. ....+|..|.|||-
T Consensus       240 GEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS-~GNTVLH~lVi~~-----~~~My~~~L~~ga~~l~~v~N~qgLTPLt  313 (782)
T KOG3676|consen  240 GEYPLSFAACTNQPEIVRLLLAHGADPNAQDS-NGNTVLHMLVIHF-----VTEMYDLALELGANALEHVRNNQGLTPLT  313 (782)
T ss_pred             ccCchHHHHHcCCHHHHHHHHhcCCCCCcccc-CCChHHHHHHHHH-----HHHHHHHHHhcCCCccccccccCCCChHH
Confidence            56789999999999999999998887777776 8999999988764     58888888888433 26678999999999


Q ss_pred             HHHHhCCHHHHHHHHHh
Q 044439           85 VAAKFGHSDIVSVLIKE  101 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~  101 (121)
                      +|+..|+.++.+.+++.
T Consensus       314 LAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  314 LAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHhhhHHHHHHHHHh
Confidence            99999999999999998

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.89  E-value=3.7e-09  Score=76.07  Aligned_cols=68  Identities=21%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             HHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           43 ILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        43 ~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      .|+.++..+     ..+.++.|+.. +.+.+..|..|.||||+|+..|+.+++++|+++|++++..+..+..++
T Consensus        85 ~L~~aa~~G-----~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpL  152 (664)
T PTZ00322         85 ELCQLAASG-----DAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL  152 (664)
T ss_pred             HHHHHHHcC-----CHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            477888888     58999999998 667788899999999999999999999999999999998887766554

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.82  E-value=1.8e-09  Score=79.82  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      +.+++|-.|+..|+.|.++.|+.++......+. .|.+||.+|+..+     ++.+|+.|+.+...+....|+.+.|+|.
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdk-kgf~plImaatag-----h~tvV~~llk~ha~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDK-KGFVPLIMAATAG-----HITVVQDLLKAHADVEAQSDRTKDTMLS  829 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhccccccccc-ccchhhhhhcccC-----chHHHHHHHhhhhhhhhhcccccCceEE
Confidence            345566666666666666666665443333333 5666666666555     3555555555533444444555555555


Q ss_pred             HHHHhCCHHHHHHHHHhCCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSA  105 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~  105 (121)
                      +|+..|..+++++||..|++-
T Consensus       830 lacsggr~~vvelLl~~gank  850 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANK  850 (2131)
T ss_pred             EecCCCcchHHHHHHHhhccc
Confidence            555555555555555555543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.74  E-value=1.2e-08  Score=75.73  Aligned_cols=99  Identities=20%  Similarity=0.224  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      .=++|..|+..|+..+|+.|+..........+..+.|+|.+||..+     +.++++.||.. +..-..++-...|||.+
T Consensus       790 gf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsgg-----r~~vvelLl~~-gankehrnvsDytPlsl  863 (2131)
T KOG4369|consen  790 GFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGG-----RTRVVELLLNA-GANKEHRNVSDYTPLSL  863 (2131)
T ss_pred             cchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCC-----cchHHHHHHHh-hccccccchhhcCchhh
Confidence            3456888888888888888887755444444457788888888777     57888888877 44445567777888888


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      |+..|..++|.+|+..|+.|+....
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtg  888 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTG  888 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccc
Confidence            8888888888888888877765443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.71  E-value=7.2e-08  Score=66.27  Aligned_cols=87  Identities=15%  Similarity=0.219  Sum_probs=69.4

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhh--hHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDE--IESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~--~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      .++|.++...+.+.+...+....  ..+..+ ..|.||||+|+..+     +...+..|+.. +++...+|..|++|||-
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D-~~g~TpLhlAV~Lg-----~~~~a~~Ll~a-~Adv~~kN~~gWs~L~E   94 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRD-PPGRTPLHLAVRLG-----HVEAARILLSA-GADVSIKNNEGWSPLHE   94 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceecccc-CCCCccHHHHHHhc-----CHHHHHHHHhc-CCCccccccccccHHHH
Confidence            45899998888888877655421  122223 36899999999998     58999999998 66677889999999999


Q ss_pred             HHHhCCHHHHHHHHHh
Q 044439           86 AAKFGHSDIVSVLIKE  101 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~  101 (121)
                      |+..|+.+++..++.+
T Consensus        95 Av~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   95 AVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            9999999988887765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.61  E-value=2.7e-08  Score=71.76  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=60.8

Q ss_pred             CCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccC-CCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           38 QTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNA-KGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        38 ~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ..|+++||+++..+     ..++++||+++ +.++..+|. .|+||||=|...|+.+|+..|+++|++.-+..+++..+
T Consensus        50 ~~GR~alH~~~S~~-----k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   50 RYGRTALHIAVSEN-----KNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhccceeeeeeccc-----hhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence            48999999999877     58999999999 555544454 78999999999999999999999999888888777655

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.51  E-value=1.1e-06  Score=61.47  Aligned_cols=95  Identities=25%  Similarity=0.294  Sum_probs=65.5

Q ss_pred             HHHHHHHcCChHHHHHHhhhhhh--HhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            9 NLFKAAAAGNAEPFKKDIRRDEI--ESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         9 ~l~~a~~~g~~~~~~~ll~~~~~--~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      -||+|++.|+-++|+++++++..  .+... +.|.|+||-|+..+     ...++++++.. +......|..|.||-.-|
T Consensus       902 llh~a~~tg~~eivkyildh~p~elld~~d-e~get~lhkaa~~~-----~r~vc~~lvda-gasl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  902 LLHYAAKTGNGEIVKYILDHGPSELLDMAD-ETGETALHKAACQR-----NRAVCQLLVDA-GASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             HHHHHHhcCChHHHHHHHhcCCHHHHHHHh-hhhhHHHHHHHHhc-----chHHHHHHHhc-chhheecccCCCChHHHH
Confidence            47888888888888888887432  22223 47888888777666     36667777776 445555678888888888


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      -..|..++..+|-.+.-.--+..+
T Consensus       975 qqa~d~dlaayle~rq~yk~i~~e  998 (1004)
T KOG0782|consen  975 QQAGDPDLAAYLESRQNYKVIGHE  998 (1004)
T ss_pred             HhcCCchHHHHHhhhhchhhcccc
Confidence            888888888888766544333333

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.45  E-value=1.1e-07  Score=68.79  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ..+.++||.++..+...++++|++++......+.+.|+|+||-|..+|     +++|+-.|++. +......|.+|.+||
T Consensus        50 ~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG-----~idca~lLL~~-g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   50 RYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYG-----NIDCASLLLSK-GRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhc-----hHHHHHHHHhc-CCceEEecccCCCHH
Confidence            346788999999999999999999965554555578999999999999     69999999998 566778899999999


Q ss_pred             HHHHH
Q 044439           84 QVAAK   88 (121)
Q Consensus        84 ~~a~~   88 (121)
                      .+-.+
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            98776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.45  E-value=4.7e-07  Score=39.94  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=23.8

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN   76 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~   76 (121)
                      .|.||||+|+..+     +.+++++|++. ++.++.++
T Consensus         1 dG~TpLh~A~~~~-----~~~~v~~Ll~~-ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRG-----HPDIVKLLLKH-GADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTT-----CHHHHHHHHHT-TSCTTCBC
T ss_pred             CcccHHHHHHHHH-----HHHHHHHHHHC-cCCCCCCC
Confidence            3788888888888     58888888887 55555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.44  E-value=3.9e-07  Score=39.37  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=18.9

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHHHHh
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEILEI   67 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~ll~~   67 (121)
                      .|+||||+|+..+     +.+++++|++.
T Consensus         1 ~G~T~Lh~A~~~g-----~~e~v~~Ll~~   24 (30)
T PF13606_consen    1 NGNTPLHLAASNG-----NIEIVKYLLEH   24 (30)
T ss_pred             CCCCHHHHHHHhC-----CHHHHHHHHHc
Confidence            3778888888877     58888888877

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=1.2e-06  Score=58.55  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=51.1

Q ss_pred             CCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           41 NTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        41 ~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ..-|..||+.|+     .+.++.|++. +..++.+|+...+||.+|+.-||..++++|++.||--+.+.-+|.|.
T Consensus        37 f~elceacR~GD-----~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGD-----VDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhccc-----HHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            344567777774     7778888876 66777778888888888888888888888888887666666666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.34  E-value=2.1e-07  Score=68.30  Aligned_cols=92  Identities=18%  Similarity=0.050  Sum_probs=71.1

Q ss_pred             HHHHHHHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      +=+|.++..+....++.+++- +........ .|...+|+++..+      .+..-.++...+..++.+|..|+||||||
T Consensus       576 lllhL~a~~lyawLie~~~e~~~~~~~eld~-d~qgV~hfca~lg------~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  576 LLLHLLAELLYAWLIEKVIEWAGSGDLELDR-DGQGVIHFCAALG------YEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             HHHHHHHHHhHHHHHHHHhcccccCchhhcc-cCCChhhHhhhcC------CceeEEEEeecccccccccCCCCcccchH
Confidence            348899999999999988875 333333333 6788888877766      55555554444667788899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQ  106 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~  106 (121)
                      +.+|+..++..|++.|++..
T Consensus       649 a~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPG  668 (975)
T ss_pred             hhcCHHHHHHHHHHhccccc
Confidence            99999999999999988754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.33  E-value=1e-06  Score=60.55  Aligned_cols=72  Identities=19%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             CCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           41 NTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        41 ~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      ...||.+++.+     ..+..-.|+.-++.........|.||||+|++.|...-+++|+-+||+++..+..|..+..
T Consensus       134 srQLhasvRt~-----nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~  205 (669)
T KOG0818|consen  134 SKQLHSSVRTG-----NLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVD  205 (669)
T ss_pred             HHHHHHHhhcc-----cHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHH
Confidence            35688888888     4777766777755555555668999999999999999999999999999888877766543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.30  E-value=2e-06  Score=60.28  Aligned_cols=95  Identities=16%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             HHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCC-hhhhcccCCCCcHHHHHHH
Q 044439           10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP-SLLLKVNAKGDTPLQVAAK   88 (121)
Q Consensus        10 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~tpL~~a~~   88 (121)
                      |..|+..+++-.++..-..+....... .+..+.||+|+..|     +-++|++++.+++ .+.+..+..|.|.||-|+-
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~-~~~~sllh~a~~tg-----~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQG-PDHCSLLHYAAKTG-----NGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeC-cchhhHHHHHHhcC-----ChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            677888888666555544433332223 36789999999888     6899999999864 4567778899999999999


Q ss_pred             hCCHHHHHHHHHhCCCCCCCCC
Q 044439           89 FGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        89 ~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      +++..+..+|++.||+......
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~  965 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDS  965 (1004)
T ss_pred             hcchHHHHHHHhcchhheeccc
Confidence            9999999999999997654443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.25  E-value=1.9e-06  Score=59.53  Aligned_cols=71  Identities=23%  Similarity=0.375  Sum_probs=55.2

Q ss_pred             CHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           42 TILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        42 t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      .++|++.....    .-...+.+.......++..|..|.||||+|+..|+.+.++.|+..||++.+.|+.++..+
T Consensus        22 ~~lh~~~~~~~----~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L   92 (560)
T KOG0522|consen   22 KPLHWAVVTTD----SDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPL   92 (560)
T ss_pred             cccchhhhccc----hhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHH
Confidence            45888887653    223333333333455678899999999999999999999999999999999999888764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.05  E-value=2e-05  Score=57.34  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             HHHHHHHcCChHHHHHHhhhhhh---HhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhC-----------------
Q 044439            9 NLFKAAAAGNAEPFKKDIRRDEI---ESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEIC-----------------   68 (121)
Q Consensus         9 ~l~~a~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~-----------------   68 (121)
                      .+..|+..|+...|+.+++....   .....+.-|.+++++|....     +.+++++|+...                 
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~ne-----nle~~eLLl~~~~~~gdALL~aI~~~~v~  102 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNE-----NLELQELLLDTSSEEGDALLLAIAVGSVP  102 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccc-----cHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence            35678888888888888876332   11112235667777766554     355555554431                 


Q ss_pred             --------Chh----------hhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           69 --------PSL----------LLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        69 --------~~~----------~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                              ...          .......+.|||.+||..++.||+++|+.+|+.+.....
T Consensus       103 ~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen  103 LVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence                    111          113345678999999999999999999999998876554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.98  E-value=5.5e-05  Score=50.87  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             HHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHH
Q 044439            9 NLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAK   88 (121)
Q Consensus         9 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~   88 (121)
                      .|++|+..|+++.|+.|++.+...+..+. ....||-+|+..|     |..++++|+++ ++++..-..+|.-. |+++.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~-fD~spL~lAsLcG-----He~vvklLLen-GAiC~rdtf~G~RC-~YgaL  110 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDR-FDSSPLYLASLCG-----HEDVVKLLLEN-GAICSRDTFDGDRC-HYGAL  110 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhc-ccccHHHHHHHcC-----cHHHHHHHHHc-CCcccccccCcchh-hhhhh
Confidence            58999999999999999998766666666 7789999999999     59999999998 66666545566544 33443


Q ss_pred             h
Q 044439           89 F   89 (121)
Q Consensus        89 ~   89 (121)
                      +
T Consensus       111 n  111 (516)
T KOG0511|consen  111 N  111 (516)
T ss_pred             h
Confidence            3

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.97  E-value=1.4e-05  Score=58.64  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      +.||.|+..|....++.|++.+...+.... .|.+|+|.+...|     +...+..++++ ++..+..+..|.+|+.+|.
T Consensus       658 s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~-~g~~plh~~~~~g-----~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  658 SLLHVAVGTGDSGAVELLLQNGADVNALDS-KGRTPLHHATASG-----HTSIACLLLKR-GADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             chhhhhhccchHHHHHHHHhcCCcchhhhc-cCCCcchhhhhhc-----ccchhhhhccc-cccccccCccCcchhhHHh
Confidence            445556655655555555555444444433 5556666555555     34444555544 4455555555666666554


Q ss_pred             HhCCHHH
Q 044439           88 KFGHSDI   94 (121)
Q Consensus        88 ~~g~~~~   94 (121)
                      ...+..+
T Consensus       731 ~~~~~d~  737 (785)
T KOG0521|consen  731 EAANADI  737 (785)
T ss_pred             hhccccH
Confidence            4444333

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.96  E-value=7e-06  Score=60.19  Aligned_cols=74  Identities=22%  Similarity=0.362  Sum_probs=64.6

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      .|.+++|.|+..+     ....+++|+++ ++.++..+..|.||+|.+...|+...+..|+++|++.++-+.++.....+
T Consensus       655 ~~~s~lh~a~~~~-----~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  655 IGCSLLHVAVGTG-----DSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             cccchhhhhhccc-----hHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhH
Confidence            5789999999888     57788899998 66789999999999999999999999999999999988877776665544

>smart00248 ANK ankyrin repeats

Probab=97.95  E-value=2.8e-05  Score=32.04  Aligned_cols=29  Identities=31%  Similarity=0.605  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCCCCC
Q 044439           78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQ  106 (121)
Q Consensus        78 ~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~  106 (121)
                      .+.||+++++..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36799999999999999999999887543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.68  E-value=0.0003  Score=43.20  Aligned_cols=61  Identities=16%  Similarity=0.088  Sum_probs=53.1

Q ss_pred             CCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCC
Q 044439           38 QTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAK  103 (121)
Q Consensus        38 ~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga  103 (121)
                      ..|||+++.|+..+     +.+.+.+|+..+...+...+..+.+...+|-..|..+.+..|-+.-.
T Consensus        10 ~fgWTalmcaa~eg-----~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen   10 AFGWTALMCAAMEG-----SNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             hhcchHHHHHhhhc-----chhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            37999999999887     68899999998667888889999999999999999999999988744

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.52  E-value=0.0002  Score=50.61  Aligned_cols=61  Identities=20%  Similarity=0.010  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChh
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSL   71 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~   71 (121)
                      ..+-|+||.|+..|++.+.+.|+=.+.+....+. .|+|+|.+|.+.+     ..+|+..|++. ++.
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda-~g~t~l~yar~a~-----sqec~d~llq~-gcp  719 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA-HGRTALFYARQAG-----SQECIDVLLQY-GCP  719 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHHhCccceeccc-CCchhhhhHhhcc-----cHHHHHHHHHc-CCC
Confidence            3456899999999999999998876555555555 8999999999998     69999999998 543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.50  E-value=0.00012  Score=50.50  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=49.9

Q ss_pred             CCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHh-CCCCCCCC
Q 044439           40 KNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKE-AKSAQHGN  109 (121)
Q Consensus        40 g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~-ga~~~~~~  109 (121)
                      +...+.+|+..|+     +.-++.+.-. +.+....|.+..|+||+||..|+.+++++|++. +.+++.+.
T Consensus       506 ~~i~~~~aa~~GD-----~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD  570 (622)
T KOG0506|consen  506 TVINVMYAAKNGD-----LSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD  570 (622)
T ss_pred             chhhhhhhhhcCC-----HHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh
Confidence            4567889998885     6555555444 667788899999999999999999999999988 45444443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.27  E-value=0.0001  Score=45.20  Aligned_cols=45  Identities=24%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             hhhcccCCCCcHHHHHHHhCCHHHHHHHHHhC-CCCCCCCCCCCcC
Q 044439           71 LLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEA-KSAQHGNEEPERG  115 (121)
Q Consensus        71 ~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~g-a~~~~~~~~~~~~  115 (121)
                      +++.+|..|+|+++.|+..|..+.+.+|+.+| +.+-....++...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~sslda   49 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDA   49 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchH
Confidence            45678999999999999999999999999999 6665555544443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.60  E-value=0.0035  Score=43.82  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=37.9

Q ss_pred             CCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHh
Q 044439           40 KNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKE  101 (121)
Q Consensus        40 g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~  101 (121)
                      ..|+||+|+..+     .-.|+..+++. +++....|..|.||..+++   +.++-..++.+
T Consensus       430 tsT~LH~aa~qg-----~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~---nkdVk~~F~a~  482 (591)
T KOG2505|consen  430 TSTFLHYAAAQG-----ARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA---NKDVKSIFIAR  482 (591)
T ss_pred             cchHHHHHHhcc-----hHHHHHHHHHh-cCCchhcccCCCCcccccc---cHHHHHHHHHH
Confidence            468888888777     47788888887 5777778888888888776   44555544433

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.57  E-value=0.0076  Score=42.25  Aligned_cols=61  Identities=20%  Similarity=0.064  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhCChhh-----hcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           58 TKFIEEILEICPSLL-----LKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        58 ~~~~~~ll~~~~~~~-----~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      ...+++|..+.....     ...+..-.|+||+|+.+|..+++.+||+.|+++..+++.|..+..+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~l  469 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSL  469 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccc
Confidence            455667766632221     2223345699999999999999999999999999999887766544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.55  E-value=0.0015  Score=48.93  Aligned_cols=89  Identities=19%  Similarity=0.109  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCC---h--hhhcccCCC
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP---S--LLLKVNAKG   79 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~---~--~~~~~~~~~   79 (121)
                      .+..+|.++..|. +..-.++.- +......+. .|+||||||+.+|     +..++..|+.-+.   .  +.......|
T Consensus       608 ~qgV~hfca~lg~-ewA~ll~~~~~~ai~i~D~-~G~tpL~wAa~~G-----~e~l~a~l~~lga~~~~~tdps~~~p~g  680 (975)
T KOG0520|consen  608 GQGVIHFCAALGY-EWAFLPISADGVAIDIRDR-NGWTPLHWAAFRG-----REKLVASLIELGADPGAVTDPSPETPGG  680 (975)
T ss_pred             CCChhhHhhhcCC-ceeEEEEeecccccccccC-CCCcccchHhhcC-----HHHHHHHHHHhccccccccCCCCCCCCC
Confidence            3445777555554 443344433 233334444 8999999999999     5777888875422   1  223344568


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHh
Q 044439           80 DTPLQVAAKFGHSDIVSVLIKE  101 (121)
Q Consensus        80 ~tpL~~a~~~g~~~~~~~Ll~~  101 (121)
                      .|+-.+|...|+..+..+|-+.
T Consensus       681 ~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  681 KTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CchhhhhhcccccchHHHHhhh
Confidence            8999999999999987777554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.16  E-value=0.13  Score=38.47  Aligned_cols=61  Identities=11%  Similarity=-0.009  Sum_probs=44.8

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHh----------hhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhh
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIES----------LLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLL   73 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~----------~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~   73 (121)
                      ..+|.+|+..|.++.|+.++.......          ... ..+-||+.+||..+     +.+|++.|+..++++..
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~f-t~ditPliLAAh~N-----nyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHF-TPDITPLMLAAHLN-----NFEILQCLLTRGHCIPI  159 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccC-CCCccHHHHHHHhc-----chHHHHHHHHcCCCCCC
Confidence            456888999999999999887522110          111 34689999999888     69999999998655443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.66  E-value=1.6  Score=28.14  Aligned_cols=48  Identities=25%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             cHHHHHHHHHhCChhhh---cccCCCCcHHHHHHHhCCHHHHHHHHHhCCC
Q 044439           57 STKFIEEILEICPSLLL---KVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        57 ~~~~~~~ll~~~~~~~~---~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      +..+++.++.++...++   ..-..|.|-|.=|...++.|++.+|+++||-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            45677777877544443   4456899999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.45  E-value=2.1  Score=22.28  Aligned_cols=47  Identities=21%  Similarity=0.249  Sum_probs=35.3

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHh
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEI   67 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~   67 (121)
                      ..+..|+..|+.++++.+++....        ....+..|....     +.+++++|+..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H-----~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSH-----NNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHh-----hHHHHHHHHHh
Confidence            458899999999999988754211        134577777766     58999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
2etb_A	256	Transient receptor potential cation channel subfam	5e-08
2pnn_A	273	Transient receptor potential cation channel subfa	3e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-04

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 10  LFKAAAAGNAEPFKKDIRRDEIESLLTAQTK--NTILHINITSRKRKNVSTKFI----EE 63
           L  AA     +     +      + L A     NT+LH  +        ++  +    + 
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 64  ILEICPSLLLK------VNAKGDTPLQVAAKFGHSDIVSVLI-KEAKSA 105
           +L++   L          N +G TPL++AAK G  +I   ++ +E   A
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 20/121 (16%)

Query: 10  LFKAAAAGNAEPFKKDIRRDEIESLLTAQTK--NTILHINITSRKRKNVSTKFI----EE 63
           L  AA        K  ++     + ++A+    NT+LH  +        +TKF+     E
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 64  ILEICPSLLLKV------NAKGDTPLQVAAKFGHSDIVSVLI-KEAK-------SAQHGN 109
           IL +   L   +      N KG TPL +AA  G   +++ ++ +E         +A H +
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271

Query: 110 E 110
            
Sbjct: 272 H 272

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.6 bits (96), Expect = 9e-06
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            + +     L  AA+ G  D V +L+ 
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMA 45

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           V AK   G TPL +AA+ GH ++V +L++
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 16/83 (19%)

Query: 41  NTILHINITSRKRKNVSTKFIEEILEI----------CPSLLLKVNAKGDTPLQVAAKFG 90
           NT+LH  +        +TKF+ ++ ++            +L   +N  G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 91  HSDIVSVLIK------EAKSAQH 107
              I   +I+       A    H
Sbjct: 237 KIGIFQHIIRREIADAAAHHHHH 259

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 75  VNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
           V ++ +TP   AA+      +S L+++ 
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDR 67

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 37  AQTKN--TILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAK---GDTPLQVAAKFGH 91
             T++  + LH+ I      +       E++      L  +N +     TPL +A     
Sbjct: 3   QLTEDGDSFLHLAI-----IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 57

Query: 92  SDIVSVLIK 100
            +I   L+ 
Sbjct: 58  PEIAEALLG 66

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 75  VNAKGDTPLQVAAKFGHSDIVSVLIKEA 102
           V ++ +TP   AA+      +S L+++ 
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDR 68

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 9e-05
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLIKEA 102
           L+    L+     VN     G  P+ +A + GH+ +VS L  E+
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
             +  S L     ++ +   G TPL++A + G  D+V +L  
Sbjct: 114 TAVV-SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 16/63 (25%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLI-----KEAKS-----AQHG 108
           L+    L      ++ +   G  P+ +A + GH D+   L          +     A  G
Sbjct: 91  LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150

Query: 109 NEE 111
             +
Sbjct: 151 PSD 153

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 26/107 (24%)

Query: 10  LFKAAAAGNAEPFKKDIRRDEIESLL-------TAQTKN--TILHINITSRKRKNVSTKF 60
            F     G  +         E+  +        TA  K    ++  NI +          
Sbjct: 79  FFPLFQGGGNDI----TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN---- 130

Query: 61  IEEILEICPSLLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
             E++ +   +  +    +  K   G T L+   +      + ++  
Sbjct: 131 --EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           +L +    ++     G  P+ +A + GH DI   L  
Sbjct: 96  VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           ++      D  L  AA  G  + V  L++
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLE 33

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           LLL+    VN      D+PL  AAK GH DIV +L+ 
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           L I  +LL +    N      +TPL +AA+ GH+++   L++
Sbjct: 27  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 6/41 (14%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLI 99
           +E+  SLL      NA+   G TPL +AA+ GH+++V++L+
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
            LL+    VNAK   G +PL  AA+ GH+DIV++L+K
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
                  G TPL VA+  GH  IV  L++
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQ 35

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
            LL     +  +   G TP+ +A   G+  +  V+  
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
            LL+     +      ++ L +A+  G++DIV +L++
Sbjct: 54  FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE 90

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 36.6 bits (86), Expect = 6e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           LLL+    +N     G TPL  A +  H   V  L+ 
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 36.9 bits (87), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VNAK   G TPL +AA+ GH ++V +L++
Sbjct: 94  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 36.9 bits (87), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 18/55 (32%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLI-----KEAKS----------AQHGNEE 111
           VNAK   G TPL +AA+ GH ++V +L+       AK           A++G+ E
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 35.8 bits (84), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VNAK   G TPL +AA+ GH ++V +L++
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 56

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.2 bits (85), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VNAK   G TPL +AA+ GH ++V +L++
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 35.8 bits (84), Expect = 5e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VNAK   G TPL +AA+ GH ++V +L++
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 56

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VN     G  PL  AA  G  +I+  L+ 
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLL 61

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            + +  D     A K G  D V   + 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVA 28

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 36.2 bits (85), Expect = 5e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           +NA      TPL  A   GH   V +L+ 
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLS 94

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           +    + + +   +N     G TPL  AA  G   +V  L++
Sbjct: 16  MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 36.6 bits (86), Expect = 6e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
            LL+            ++ L +A   G++DIV +L+ 
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 36.2 bits (85), Expect = 7e-04
 Identities = 4/29 (13%), Positives = 10/29 (34%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
              +   G   + +A   G+  +  V+  
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 36.2 bits (85), Expect = 7e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           +LL     VN     G TPL  A    H   V +L++
Sbjct: 87  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 36.2 bits (85), Expect = 4e-04
 Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VNA+   G+TPL +AAK GH++IV +L+ 
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 35.4 bits (83), Expect = 7e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VNA+   G+TP  +A K GH +IV +L  
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 75 VNAKGDTPLQVAAKFGHSDIVSVLI 99
           N++ D  L  AAK G  + V  L 
Sbjct: 4  GNSEADRQLLEAAKAGDVETVKKLC 28

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)

Query: 71  LLLK----VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           +L+     +N      DTPL +AA  GH DIV  L++
Sbjct: 57  MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 74  KVNAK-GDTPLQVAAKFGHSDIVSVLIK 100
             N    + PL  AA    + IV +L+ 
Sbjct: 56  LKNLLENEFPLHQAATLEDTKIVKILLF 83

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            + A+     ++AA+ GH  +++ L +
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCE 149

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           +N +   GDT L  AA  G++DIV +L+ 
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLA 161

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 18/97 (18%)

Query: 9   NLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEIC 68
           N +K  + G       +   ++ ES+         LH           + +     L  C
Sbjct: 48  NWWKGTSKGRTGLIPSNYVAEQAESIDNP------LHE---------AAKRGNLSWLREC 92

Query: 69  PSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIKEA 102
               + VN     G T L  A   GH DIV +L  + 
Sbjct: 93  LDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 6/57 (10%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG 115
            ++    +     VN +      PL ++ +     +   L+++             G
Sbjct: 224 EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLIKEAKSAQHG 108
           LE+   L+       AK    +TPL  A +F + + + +++ +   ++  
Sbjct: 153 LEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMM-DTVPSKSS 201

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 35.8 bits (84), Expect = 9e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           VNA+   G T   ++   G+ D+  +L K
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.88
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.86
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.86
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.85
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.85
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.84
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.84
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.83
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.83
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.83
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.83
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.82
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.82
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.82
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.81
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.81
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.81
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.81
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.81
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.81
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.81
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.81
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.81
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.81
2rfa_A	232	Transient receptor potential cation channel subfa	99.81
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.81
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.8
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.8
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.8
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.8
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.8
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.8
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.8
2etb_A	256	Transient receptor potential cation channel subfam	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
2etb_A	256	Transient receptor potential cation channel subfam	99.79
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.79
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.79
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.79
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.79
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.79
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.79
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.79
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.79
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.79
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.79
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.78
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.78
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.78
2rfa_A	232	Transient receptor potential cation channel subfa	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.78
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.78
2pnn_A	273	Transient receptor potential cation channel subfa	99.78
2pnn_A	273	Transient receptor potential cation channel subfa	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.77
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.77
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.77
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.77
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.76
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.76
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.76
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.76
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.76
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.76
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.75
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.75
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.75
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.74
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.74
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.74
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.74
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.74
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.74
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.73
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.73
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.73
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.72
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.72
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.71
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.71
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.71
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.68
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.67
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.67
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.65
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.64
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.59
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.58
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.54
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.51
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	83.64

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=6.2e-23  Score=123.34  Aligned_cols=104  Identities=20%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...||||.|+..++.++++.+++.+......+. .|.||||+|+..+     +.+++++|++. +.+++.++..|.||||
T Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~-~g~TpLh~A~~~g-----~~~~v~~Ll~~-gadvn~~d~~G~TpLh  108 (169)
T 4gpm_A           36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENG-----HKEVVKLLISK-GADVNAKDSDGRTPLH  108 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc-CCCCHHHHHHHcC-----CHHHHHHHHHC-cCCCCCCCCCCCCHHH
Confidence            345666666666666666666665443333333 5666666666665     46666666665 4455556666666666


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      +|+..|+.+++++|+++|++++..+..+.++
T Consensus       109 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp  139 (169)
T 4gpm_A          109 HAAENGHKEVVKLLISKGADVNTSDSDGRTP  139 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            6666666666666666666666655554443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.8e-22  Score=110.09  Aligned_cols=92  Identities=23%  Similarity=0.267  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..||||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNG-----HLEVVKLLLEA-GADVNAKDKNGRTPLHL   74 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCccCCCCCCHHHH
Confidence            56899999999999999999988655544444 8999999999998     69999999998 66778889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~  104 (121)
                      |+..|+.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999984

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=2.1e-22  Score=116.78  Aligned_cols=110  Identities=23%  Similarity=0.188  Sum_probs=95.8

Q ss_pred             CCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            3 PVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         3 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      +....++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHG-----HLKVVELLLQH-KALVNTTGYQNDSP   79 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCGGGCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCcccCcCCCCCCH
Confidence            35678999999999999999999988554444444 7999999999988     69999999998 66778889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      ||+|+..|+.+++++|+++|++++..+..+.++..++
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  116 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT  116 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999999888888776654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1.4e-22  Score=115.67  Aligned_cols=107  Identities=15%  Similarity=0.119  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ..+++||.|+..|+.+.++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCG-----QLEILEFLLLK-GADINAPDKHHITPLL   78 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT-TSSCHHHHHHHTT-----CHHHHHHHHTT-TCCTTCCCTTSCCHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC-CCCcHHHHHHHcC-----CHHHHHHHHHc-CCCCCcCCCCCCCHHH
Confidence            356899999999999999999988654444444 7999999999988     69999999988 6777888999999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      +|+..|+.+++++|+++|++++..+..+.++..+
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  112 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA  112 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            9999999999999999999999888777665443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.88  E-value=3.7e-22  Score=119.93  Aligned_cols=97  Identities=21%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||+|+..|+.++++.|++.+......+. .|+||||+|+..+     +.+++++|++. +.+.+.++..|.|||
T Consensus        68 ~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g-----~~~~v~~Ll~~-gad~~~~d~~G~TpL  140 (169)
T 4gpm_A           68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENG-----HKEVVKLLISK-GADVNTSDSDGRTPL  140 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCccccCCCCCCHH
Confidence            3456778888888888888888777554444444 6788888888777     57888888877 556667778888888


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQH  107 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~  107 (121)
                      ++|+..|+.+++++|+++||+++.
T Consensus       141 ~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          141 DLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHTTCHHHHHHHHTC------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCC
Confidence            888888888888888888886643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=1.8e-21  Score=115.86  Aligned_cols=107  Identities=16%  Similarity=0.093  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus        42 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~  114 (165)
T 3twr_A           42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYG-----HYEVAELLVKH-GAVVNVADLWKFTPLHE  114 (165)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             CCCHHHHHHHcChHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHcC-----cHHHHHHHHhC-CCCCCCcCCCCCCHHHH
Confidence            45899999999999999999988655444444 7899999999988     59999999998 66777889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+..|+.+++++|+++|++++..+..+.++..+.
T Consensus       115 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a  148 (165)
T 3twr_A          115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV  148 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGS
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhH
Confidence            9999999999999999999998888877776553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=3e-21  Score=111.87  Aligned_cols=105  Identities=22%  Similarity=0.248  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++||+|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHG-----HLEIVEVLLKN-GADVNAVDAIGFTPLH   85 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCcCCCCCCCHHH
Confidence            356889999999999999999998654444444 7999999999998     69999999998 6677788999999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +|+..|+.+++++|+++|++++..+..+.+..
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl  117 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF  117 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHH
Confidence            99999999999999999999988777665543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.86  E-value=4.1e-21  Score=115.80  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=93.0

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        37 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~d~~g~t~L  109 (179)
T 3f6q_A           37 DHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHG-----HRDIVQKLLQY-KADINAVNEHGNVPL  109 (179)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCccCCCCCCHH
Confidence            3466899999999999999999988655544444 7899999999988     59999999998 667778899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|+..|+.+++++|+++|++++..+..+..+..++
T Consensus       110 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A          110 HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA  145 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence            999999999999999999999998888887766543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.86  E-value=1.5e-21  Score=113.09  Aligned_cols=105  Identities=17%  Similarity=0.101  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCC-CCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAK-GDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~tp   82 (121)
                      ....++||.|+..|+.++++.|++.+........ .|.||||+|+. +     +.+++++|++. +...+..+.. |.||
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~-~-----~~~~v~~Ll~~-g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMMM-G-----SAQVAELLLLH-GAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCTTTTTSTT-S-----CHHHHHHHHHH-TCCSSCCBTTTTBCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHc-C-----CHHHHHHHHHC-CCCCCCcCCCCCCCH
Confidence            4577899999999999999999988654444444 89999999998 7     69999999998 6667778888 9999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      ||+|+..|+.+++++|+++|++++..+..+.++.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl  115 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV  115 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            9999999999999999999999988777665543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.86  E-value=4.3e-21  Score=122.36  Aligned_cols=110  Identities=15%  Similarity=0.052  Sum_probs=89.2

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....+|||.|+..|+.++++.|++.+..........|.||||+|+..+     +.+++++|++. +...+.++..|.|||
T Consensus       156 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~-----~~~~v~~Ll~~-gad~~~~d~~g~tpL  229 (282)
T 1oy3_D          156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-----AASVLELLLKA-GADPTARMYGGRTPL  229 (282)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC-----CHHHHHHHHHc-CCCCcccccCCCCHH
Confidence            356789999999999999999999866555544435999999999988     69999999998 777888899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|+..|+.+++++|+++|++++..+..+.++....
T Consensus       230 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          230 GSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCCCCCCC----------
T ss_pred             HHHHHcCCcHHHHHHHHcCCCcCcCCCccccccccc
Confidence            999999999999999999999999988887776543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=4.4e-22  Score=112.24  Aligned_cols=106  Identities=22%  Similarity=0.240  Sum_probs=90.4

Q ss_pred             CCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            3 PVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         3 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      +....++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNG-----HAEIVKLLLAK-GADVNARSKDGNTP   78 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS-SSCCTTHHHHTTT-----CHHHHHHHTTT-TCCTTCCCTTCCCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC-----cHHHHHHHHHc-CCCCcccCCCCCCH
Confidence            45678999999999999999999988654444444 8999999999988     69999999998 66777889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |++|+..|+.+++++|+++|++++..+..+..+
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            999999999999999999999998776655443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=6.6e-21  Score=112.29  Aligned_cols=105  Identities=18%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        32 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L  104 (153)
T 1awc_B           32 WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEG-----HANIVEVLLKH-GADVNAKDMLKMTAL  104 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHT-----CHHHHHHHHTT-TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcC-----hHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            3467899999999999999999987554444444 7899999999888     58999999987 666777889999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+|+..|+.+++++|+++|++++..+..+.++
T Consensus       105 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B          105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            99999999999999999999988877666554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=1.1e-21  Score=121.96  Aligned_cols=108  Identities=24%  Similarity=0.216  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|+...+...+..+..|.||||
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGG-----HKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCC-CCCCHHHHHHHcC-----CHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            356899999999999999999987654444444 8999999999998     6999999998756777888999999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      +|+..|+.+++++|+++|++++..+..+..+..+
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  179 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM  179 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHH
Confidence            9999999999999999999999988877765443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.85  E-value=5.7e-21  Score=122.18  Aligned_cols=109  Identities=19%  Similarity=0.148  Sum_probs=87.1

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhh---------------------------------hHhhhhcCCCCCHHHHHHhc
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDE---------------------------------IESLLTAQTKNTILHINITS   50 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~---------------------------------~~~~~~~~~g~t~lh~a~~~   50 (121)
                      ..+.||||+|+..|+.++++.|++.+.                                 ..... +..|.||||+|+..
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~~  162 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACSG  162 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHC
Confidence            345677777777777777777765321                                 11111 24689999999998


Q ss_pred             CCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           51 RKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        51 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      +     +.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..+.+++.++
T Consensus       163 g-----~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          163 G-----HHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             T-----CGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             C-----CHHHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            8     58999999998 667788899999999999999999999999999999999998888877665

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.85  E-value=1.6e-20  Score=112.45  Aligned_cols=105  Identities=18%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....+|||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L  106 (172)
T 3v30_A           34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLASTGG-----YTDIVGLLLER-DVDINIYDWNGGTPL  106 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHTT-TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc-cCCCHHHHHHHCC-----CHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            3456889999999999999888887554444444 7888999988887     58888888887 666777788889999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+|+..|+.+++++|+++|++++..+..+.++
T Consensus       107 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  138 (172)
T 3v30_A          107 LYAVRGNHVKCVEALLARGADLTTEADSGYTP  138 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            99999999999999999998888777665544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.84  E-value=2.4e-20  Score=111.21  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...+|||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~  107 (167)
T 3v31_A           35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKG-----YTDIVKMLLDC-GVDVNEYDWNGGTPLL  107 (167)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHT-----CHHHHHHHHHH-TCCTTCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcC-----CHHHHHHHHHC-CCCCCcCCCCCCCHHH
Confidence            456788888888888888888877544444344 7788888888877     58888888887 5666777888888888


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      +|+..|+.+++++|+++|++++..+..+.++
T Consensus       108 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A          108 YAVHGNHVKCVKMLLESGADPTIETDSGYNS  138 (167)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            8888888888888888888887776655543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=2.1e-20  Score=113.23  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=88.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc-CCCCcHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN-AKGDTPLQ   84 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~tpL~   84 (121)
                      ..+|||.|+..|+.++++.|++ +......+. .|.||||+|+..+     +.+++++|++. +...+..+ ..|.||||
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLE-DRDVDAVDE-NGRTALLFVAGLG-----SDKCVRLLAEA-GADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCSSSSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCcCCCCCCCCHHH
Confidence            4689999999999999999998 444444444 8999999999998     69999999998 55666666 88999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +|+..|+.+++++|+++|++++..+..+.++.
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl  147 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIEVEDERGLTAL  147 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHH
Confidence            99999999999999999999998887776543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.84  E-value=3.8e-20  Score=110.70  Aligned_cols=104  Identities=23%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus        46 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~~~~~g~t~L~  118 (169)
T 2y1l_E           46 SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFG-----HLEIVEVLLKN-GADVNANDMEGHTPLH  118 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence            456778888888888888888776444333333 6788888888777     57888888877 5556667778888888


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      +|+..|+.+++++|+++|++++..+..+...
T Consensus       119 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  149 (169)
T 2y1l_E          119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTA  149 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            8888888888888888888777666555443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.84  E-value=2e-20  Score=111.35  Aligned_cols=109  Identities=20%  Similarity=0.237  Sum_probs=90.3

Q ss_pred             CCCCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            1 MNPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         1 ~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      |.+...+++||.|+..|+.+.++.|++.........+..|.||||+|+..+     +.+++++|++. +...+..+..|.
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~   76 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN-----RVSVVEYLLQH-GADVHAKDKGGL   76 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcC-----hHHHHHHHHhc-CCCCCccCCCCC
Confidence            345567789999999999999999998644333333347889999999998     69999999998 667788899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ||||+|+..|+.+++++|+++|++++..+..+..+
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  111 (165)
T 3twr_A           77 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP  111 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            99999999999999999999999998877665544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=4.6e-20  Score=104.90  Aligned_cols=103  Identities=20%  Similarity=0.247  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      +.|+||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNG-----HLEVVKLLLEA-GADVNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcC-----cHHHHHHHHHc-CCCCcccCCCCCcHHHH
Confidence            56889999999999999999987544444444 7899999999888     59999999988 66677788899999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+..|+.+++++|++.|++++..+..+.++
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  104 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADVNAKDKNGRTP  104 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHcChHHHHHHHHHcCCCCcccCCCCCCH
Confidence            999999999999999999888777665544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.9e-20  Score=116.44  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +.+.+..+..|.||||+
T Consensus        21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~tpLh~A~~~g-----~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALHNAICGA-----NYSIVDFLITA-GANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCCCCCCCCCHHHH
Confidence            44789999999999999999987655444444 8999999999998     69999999998 67778889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCC-CCCCcCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGN-EEPERGLKLP  119 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~-~~~~~~~~~~  119 (121)
                      |+..|+.+++++|++.|++++... ..+..+..++
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            999999999999999999998764 4666665543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.83  E-value=3.7e-20  Score=115.00  Aligned_cols=110  Identities=19%  Similarity=0.081  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....+|||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++.+....+..+..|.|||
T Consensus       105 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~g~~~~~~~d~~g~t~L  178 (228)
T 2dzn_A          105 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVG-----SLKLIELLCGLGKSAVNWQDKQGWTPL  178 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTT-----CHHHHHHHHTTTCCCSCCCCTTSCCHH
T ss_pred             cCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC-CCCCHHHHHHHcC-----CHHHHHHHHhcCcccccCcCCCCCCHH
Confidence            3466889999999999999888887554444444 7899999999888     589999999885477788899999999


Q ss_pred             HHHHHhCCHHHHHHHH-HhCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLI-KEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll-~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|+..|+.+++++|+ ++|++++..+..+.++..++
T Consensus       179 ~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence            9999999999999999 88999998888888776654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.83  E-value=5.2e-20  Score=112.01  Aligned_cols=101  Identities=21%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..+|||+|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus        68 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~  140 (192)
T 2rfm_A           68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMWSIIFG-----YSEMSYFLLEH-GANVNDRNLEGETPLIV  140 (192)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCSSCCCTTCCCHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcC-----CHHHHHHHHHC-CCCCCCCCCCCCCHHHH
Confidence            44556666666666666665555333222222 4566666666555     35666666655 44445555666666666


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      |+..|+.+++++|+++|++++..+..+.
T Consensus       141 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  168 (192)
T 2rfm_A          141 ASKYGRSEIVKKLLELGADISARDLTGL  168 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            6666666666666666666555544443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.83  E-value=1e-19  Score=113.79  Aligned_cols=110  Identities=14%  Similarity=0.110  Sum_probs=94.2

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..|+.++++.|++.+..........|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus       114 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L  187 (241)
T 1k1a_A          114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN-----SLSMVQLLLQH-GANVNAQMYSGSSAL  187 (241)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCBCTTSCBHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            346688999999999999999998865544444247999999999988     69999999998 677788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|+..|+.+++++|+++|++++..+..+.++..++
T Consensus       188 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  223 (241)
T 1k1a_A          188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA  223 (241)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999888888877765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.83  E-value=4.1e-20  Score=116.15  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..|..|.||||+
T Consensus        37 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~  109 (239)
T 1ycs_B           37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAG-----HTEIVKFLVQF-GVNVNAADSDGWTPLHC  109 (239)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHH-TCCTTCCCTTCCCHHHH
T ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCccCCCCCCHHHH
Confidence            35889999999999999999988664444444 8999999999998     69999999998 67788889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      |+..|+.+++++|+++|++++..+..+.
T Consensus       110 A~~~~~~~~v~~Ll~~ga~~~~~~~~~~  137 (239)
T 1ycs_B          110 AASCNNVQVCKFLVESGAAVFAMTYSDM  137 (239)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             HHHcCCHHHHHHHHHcCCCcceecCCCC
Confidence            9999999999999999999987765443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=4.3e-20  Score=116.51  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc-CCCCcHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN-AKGDTPLQ   84 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~tpL~   84 (121)
                      ..||||.|+..|+.++++.|++ +......+. .|.||||+|+..+     +.+++++|++. +...+..+ ..|.||||
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~-~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDAVDE-NGRTALLFVAGLG-----SDKCVRLLAEA-GADLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT-TSCBHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCSSSCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC-CCCCHHHHHHHCC-----CHHHHHHHHHc-CCCCCcCCCCCCCCHHH
Confidence            4689999999999999999998 444444444 8999999999998     69999999998 56666666 88999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +|+..|+.+++++|+++|++++..+..+.++.
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l  148 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGADIEVEDERGLTAL  148 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            99999999999999999999998877766543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.83  E-value=8e-20  Score=111.19  Aligned_cols=105  Identities=19%  Similarity=0.159  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI-EGSTALIWAVKNN-----RLGIAEKLLSK-GSNVNTKDFSGKTPL  105 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhccccccccc-cCccHHHHHHHcC-----CHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence            4577999999999999999999998554444444 7999999999998     69999999999 666778899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+|+..|+.+++++|+++|++++..+..+.++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  137 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETP  137 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            99999999999999999999998877666554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.82  E-value=9e-20  Score=108.67  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   75 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHG-----QIAVVEFLLQN-GADPQLLGKGRESALSL   75 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC-CCCCHHHHHHHCC-----CHHHHHHHHHc-CCCCCCcCCCCCcHHHH
Confidence            46889999999999999999988554444444 8999999999998     69999999998 66777889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+..|+.+++++|+++|++++..+..+..+
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  105 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTP  105 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcCCCCCCCH
Confidence            999999999999999999998877666544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.82  E-value=1.8e-20  Score=110.81  Aligned_cols=100  Identities=17%  Similarity=0.087  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc-HH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT-PL   83 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t-pL   83 (121)
                      ...++||.|+..|+.++++.|++.+........ .|.||||+|+ .+     +.+++++|++. +...+..+..|.| ||
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~-~~-----~~~~v~~Ll~~-g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MG-----SARVAELLLLH-GAEPNCADPATLTRPV   82 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TT-----CHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHH-cC-----CHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence            456788888888888888888876433222222 4555555542 33     35555555554 3344444555555 55


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      |+|+..|+.+++++|+++|++++..+..+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWG  111 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCC
Confidence            55555555555555555555554444333

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.82  E-value=1e-19  Score=107.86  Aligned_cols=102  Identities=24%  Similarity=0.271  Sum_probs=70.2

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++||.|+. |+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus        37 ~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~  108 (162)
T 1ihb_A           37 FGRTALQVMKL-GNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAG-----FLDTLQTLLEF-QADVNIEDNEGNLPLH  108 (162)
T ss_dssp             TSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             cCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCCCHHH
Confidence            45577777777 777777777776443333333 6777777777776     47777777776 5556666777777777


Q ss_pred             HHHHhCCHHHHHHHHHhCCC-CCCCCCCCCc
Q 044439           85 VAAKFGHSDIVSVLIKEAKS-AQHGNEEPER  114 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~-~~~~~~~~~~  114 (121)
                      +|+..|+.+++++|+++|++ ++..+..+.+
T Consensus       109 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A          109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  139 (162)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence            77777777777777777776 3555554443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.82  E-value=6e-21  Score=112.90  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=79.6

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCC-HHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNT-ILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t-~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      ....+|||.|+ .|+.++++.|++.+........ .|.| |||+|+..+     +.+++++|++. +...+..+..|.||
T Consensus        43 ~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~-~g~ttpL~~A~~~~-----~~~~v~~Ll~~-ga~~~~~d~~g~tp  114 (156)
T 1bi7_B           43 SYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP-ATLTRPVHDAAREG-----FLDTLVVLHRA-GARLDVRDAWGRLP  114 (156)
T ss_dssp             SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-TTCCCHHHHHHHHT-----CHHHHHHHHHH-TCCSSCCCTTCCCH
T ss_pred             CCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHHCC-----CHHHHHHHHHc-CCCCcccCCCCCCH
Confidence            45678999985 9999999999998655444444 7888 999999998     69999999999 67778889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      ||+|+..|+.+++++|+++|++++..+..+.....
T Consensus       115 l~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B          115 VDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            99999999999999999999999888776655543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.81  E-value=2.2e-19  Score=107.42  Aligned_cols=103  Identities=16%  Similarity=0.119  Sum_probs=88.2

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      .++||.|+..|+.+.++.+++.+.......+..|.||||+|+..+     +.+++++|++. +...+..+..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-----EIETVRFLLEW-GADPHILAKERESALSLA   76 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTT-----CHHHHHHHHHH-TCCTTCCCTTCCCHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCchhhcccCCCHHHHH
Confidence            367999999999999999999855433333448999999999998     69999999998 667778899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      +..|+.+++++|+++|++++..+..+..+
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  105 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDINIYDWNGGTP  105 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             HHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            99999999999999999998877666544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.81  E-value=3.6e-19  Score=111.32  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhH-----hhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccC-
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIE-----SLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNA-   77 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~-----~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-   77 (121)
                      ....+|||+|+..|+.++++.|++.+...     ....+..|.||||+|+..+     +.+++++|++. +...+..+. 
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~  149 (236)
T 1ikn_D           76 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-----YLGIVELLVSL-GADVNAQEPC  149 (236)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT-----CHHHHHHHHHH-TCCTTCCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCCCCC
Confidence            34568899999999999998888764321     1122246899999999888     59999999998 556666676 


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        78 ~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      .|.||||+|+..|+.+++++|+++|++++..+..+.++..++
T Consensus       150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  191 (236)
T 1ikn_D          150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT  191 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHH
Confidence            899999999999999999999999999998888777766544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.81  E-value=2.6e-19  Score=107.02  Aligned_cols=103  Identities=26%  Similarity=0.323  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++|++|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA-SGWTPLHLAAFNG-----HLEIVEVLLKN-GADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCccCCCCCCHHHH
Confidence            45789999999999999999998654444444 8999999999998     69999999998 66777889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+..|+.+++++|+++|++++..+..+...
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  116 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVNANDMEGHTP  116 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            999999999999999999998877665543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.81  E-value=8.4e-20  Score=116.77  Aligned_cols=104  Identities=18%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHcCChH-HHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhC---------------
Q 044439            5 SIHPNLFKAAAAGNAE-PFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEIC---------------   68 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~-~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~---------------   68 (121)
                      ...+||+.|+..+..+ .++.|++.+......+. .|+||||+|+..+     +.+++++|+..+               
T Consensus        51 ~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~-~G~TpLh~A~~~g-----~~~~v~~Ll~~~a~~~~~~~~g~t~l~  124 (269)
T 4b93_B           51 EFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ-DGSSPLHVAALHG-----RADLIPLLLKHGANAGARNADQAVPLH  124 (269)
T ss_dssp             ------------------------CCCCTTCCCT-TSCCHHHHHHHTT-----CTTHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcC-----cHHHHHHHHhcCCCcCccCCCCCCccc
Confidence            4568899999887764 67777777555444444 8999999999888     356666665542               


Q ss_pred             -----------------ChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCc
Q 044439           69 -----------------PSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPER  114 (121)
Q Consensus        69 -----------------~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~  114 (121)
                                       +..++..+..|.||||+|+..|+.+++++|+++|++++..+..+..
T Consensus       125 ~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t  187 (269)
T 4b93_B          125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT  187 (269)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCB
T ss_pred             cccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCc
Confidence                             2333445556666666666666666666666666666655544443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.81  E-value=1.8e-19  Score=113.95  Aligned_cols=104  Identities=15%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus       123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-ga~~~~~~~~g~tpL~  195 (253)
T 1yyh_A          123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVN-----NVDAAVVLLKN-GANKDMQNNREETPLF  195 (253)
T ss_dssp             TCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCCCHHH
Confidence            355677777777777777777766444333333 6788888888777     57888888877 5566677888888888


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      +|+..|+.+++++|+++|++++..+..+.++
T Consensus       196 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  226 (253)
T 1yyh_A          196 LAAREGSYETAKVLLDHFANRDITDHMDRLP  226 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             HHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence            8888888888888888888877776665544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.81  E-value=1.5e-19  Score=112.50  Aligned_cols=106  Identities=17%  Similarity=0.124  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...+|||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus       105 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~  177 (231)
T 3aji_A          105 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKG-----NLKMVHILLFY-KASTNIQDTEGNTPLH  177 (231)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCSCCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcC-----CHHHHHHHHhc-CCCccccCCCCCCHHH
Confidence            345677777777777777777766443333333 6778888888777     58888888877 5566677888888888


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      +|+..|+.+++++|+++|++++..+..+.++..
T Consensus       178 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  210 (231)
T 3aji_A          178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQ  210 (231)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            888888888888888888888777766665543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.81  E-value=2.4e-19  Score=108.01  Aligned_cols=104  Identities=22%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.+.++.|++.........+..|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG-----RSAVVEMLIMR-GARINVMNRGDDTPLHL   78 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcC-----cHHHHHHHHHc-CCCCCCcCCCCCCHHHH
Confidence            4567999999999999999998744333333448999999999998     69999999998 67778889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+..|+.+++++|+++|++++..+..+..+
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~  108 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKADINAVNEHGNVP  108 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            999999999999999999998877666554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.81  E-value=1.4e-19  Score=107.26  Aligned_cols=104  Identities=15%  Similarity=0.089  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..|+.++++.|++.+........ .|.||||+|+. +     +.+++++|++. +...+..+..|.|||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~-~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L   74 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMKL-G-----NPEIARRLLLR-GANPDLKDRTGFAVI   74 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT-TSCCHHHHCCS-S-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc-cCccHHHHHHc-C-----cHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            3467899999999999999999987554444444 89999999988 6     69999999998 667778899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+|+..|+.+++++|+++|++++..+..+..+
T Consensus        75 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  106 (162)
T 1ihb_A           75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLP  106 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            99999999999999999999998877766554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.81  E-value=2.7e-19  Score=103.56  Aligned_cols=92  Identities=18%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        45 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~tpl  117 (136)
T 2jab_A           45 EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIG-----HLEIAEVLLKH-GADVNAQDKFGKTAF  117 (136)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCcCcCCCCCCHH
Confidence            4467899999999999999999988655444444 8999999999998     69999999998 666778899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhC
Q 044439           84 QVAAKFGHSDIVSVLIKEA  102 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~g  102 (121)
                      ++|+..|+.+++++|+++|
T Consensus       118 ~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          118 DISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999876

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.81  E-value=6.8e-19  Score=109.68  Aligned_cols=106  Identities=19%  Similarity=0.181  Sum_probs=76.0

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhh----hhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccC--
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESL----LTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNA--   77 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~----~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~--   77 (121)
                      ....||||.|+..|+.++++.|++.+.....    ..+..|.||||+|+..+     +.+++++|++. +...+..+.  
T Consensus        35 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~~  108 (232)
T 2rfa_A           35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ-----NVNLVRALLAR-GASVSARATGS  108 (232)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCCSG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC-----CHHHHHHHHhC-CCCCCcccCCc
Confidence            3456788888888888888888876443211    11236788888888877     58888888887 444444433  


Q ss_pred             -----------CCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           78 -----------KGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        78 -----------~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                                 .|.||||+|+..|+.+++++|+++|++++..+..+.++
T Consensus       109 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A          109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence                       68888888888888888888888888887776665544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.81  E-value=2.3e-19  Score=105.62  Aligned_cols=102  Identities=22%  Similarity=0.203  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      +.++|+.|+..|+.++++.|++.+....  .+..|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   73 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYG-----HFSTTEVLLRA-GVSRDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHT-----CHHHHHHHHTT-TCCTTCCCTTCCCHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCCCCCCCCHHHH
Confidence            4578999999999999999998854322  3447999999999998     69999999988 66677889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+..|+.+++++|+++|++++..+..+..+
T Consensus        74 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  103 (153)
T 1awc_B           74 AASEGHANIVEVLLKHGADVNAKDMLKMTA  103 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             HHHcChHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            999999999999999999998877666544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.80  E-value=7e-19  Score=109.47  Aligned_cols=107  Identities=22%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            1 MNPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         1 ~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      |+....+++||.|+..|+.+.++.++..........+..|.||||+|+..+     +.+++++|++. +...+..+..|.
T Consensus         1 me~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-----~~~~v~~Ll~~-g~~~~~~~~~g~   74 (231)
T 3aji_A            1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-----HTEIVEFLLQL-GVPVNDKDDAGW   74 (231)
T ss_dssp             --CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-----CHHHHHHHHHT-TCCSCCCCTTSC
T ss_pred             CCCccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-----cHHHHHHHHHh-CCCCCCcCCCCC
Confidence            455556677777777777777777776633322223346777777777776     47777777776 455556677777


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      ||||+|+..|+.+++++|++.|++++..+..+.
T Consensus        75 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  107 (231)
T 3aji_A           75 SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC  107 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCC
Confidence            777777777777777777777777666554443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.80  E-value=4.9e-19  Score=100.59  Aligned_cols=94  Identities=22%  Similarity=0.258  Sum_probs=82.3

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..++.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        33 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~-----~~~~~~~Ll~~-g~~~~~~~~~g~t~l  105 (126)
T 1n0r_A           33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNG-----HLEVVKLLLEA-GADVNAKDKNGRTPL  105 (126)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcC-----hHHHHHHHHHc-CCCCcccCCCCCCHH
Confidence            3467899999999999999999987554444444 7999999999988     69999999998 667778899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      ++|+..|+.+++++|+++|++
T Consensus       106 ~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          106 HLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999984

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.80  E-value=3.7e-20  Score=107.23  Aligned_cols=93  Identities=14%  Similarity=0.049  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCC-CCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQT-KNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~-g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      ....||||.|+. |+.++++.|++.+......+. . |.||||+|+..+     +.+++++|++. +...+..+..|.||
T Consensus        43 ~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~~-----~~~~v~~Ll~~-ga~~~~~d~~g~tp  114 (136)
T 1d9s_A           43 RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP-ATLTRPVHDAAREG-----FLDTLVVLHRA-GARLDVCDAWGRLP  114 (136)
T ss_dssp             TTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT-TTTBCHHHHHHHHT-----CHHHHHHHHHT-CCCCCCCSSSSSCH
T ss_pred             CCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCccCCCCCCH
Confidence            456789999999 999999999998655444444 6 899999999998     69999999998 66778889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      |++|+..|+.+++++|+++|++
T Consensus       115 l~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          115 VDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999984

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.80  E-value=2.6e-19  Score=115.22  Aligned_cols=104  Identities=20%  Similarity=0.220  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDD-----NVDMVKFLVEN-GANINQPDNEGWIPLHA  112 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT-TCCBHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCCCCCCCCcHHHH
Confidence            35789999999999999999988655444444 7999999999998     69999999998 66778889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      |+..|+.+++++|+++|++++..+..+.++.
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  143 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPL  143 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH
Confidence            9999999999999999999988776665543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.80  E-value=8e-19  Score=108.68  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus        92 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           92 GTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVN-----NVDAAVVLLKN-GANKDMQNNREETPLFL  164 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             CCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCcCHHHH
Confidence            34556666666666666655554333222222 5666666666655     46666666665 44555556666666666


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      |+..|+.+++++|+++|++++..+..+.
T Consensus       165 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  192 (223)
T 2f8y_A          165 AAREGSYETAKVLLDHFANRDITDHMDR  192 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccccCC
Confidence            6666666666666666666655544443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.80  E-value=6e-19  Score=107.70  Aligned_cols=97  Identities=23%  Similarity=0.189  Sum_probs=44.3

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      .+|||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|+...+...+..+..|.||||+|
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~-----~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  113 (201)
T 3hra_A           40 NTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGAQG-----RTEILAYMLKHATPDLNKHNRYGGNALIPA  113 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHHSCCCTTCCCTTSCCSHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHhccCcccccccCCCCcHHHHH
Confidence            3455555555555555555554332222222 4445555555444     344444444333333444444444444444


Q ss_pred             HHhCCHHHHHHHHHhC-CCCCCCC
Q 044439           87 AKFGHSDIVSVLIKEA-KSAQHGN  109 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~g-a~~~~~~  109 (121)
                      +..|+.+++++|++.| ++++..+
T Consensus       114 ~~~~~~~~v~~Ll~~g~~~~~~~~  137 (201)
T 3hra_A          114 AEKGHIDNVKLLLEDGREDIDFQN  137 (201)
T ss_dssp             HHTTCHHHHHHHHHHCCCCTTCCC
T ss_pred             HHcCCHHHHHHHHHcCCCCcCCCC
Confidence            4444444444444444 4444333

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.80  E-value=3.5e-19  Score=111.20  Aligned_cols=105  Identities=22%  Similarity=0.222  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...+|||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.||||
T Consensus       110 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~~~~~g~t~L~  182 (237)
T 3b7b_A          110 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSG-----CVDIAEILLAA-KCDLHAVNIHGDSPLH  182 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHC-----CHHHHHHHHTT-TCCTTCCCTTCCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHCC-----CHHHHHHHHHc-CCCCCCcCCCCCCHHH
Confidence            345677777777777777777766443333333 6777888777776     47777777776 5556666777888888


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +|+..|+.+++++|+++|++++..+..+.++.
T Consensus       183 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l  214 (237)
T 3b7b_A          183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPL  214 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             HHHHhCCHhHHHHHHHcCCCCCccCCCCCCHH
Confidence            88888888888888888887777766665543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.79  E-value=9.1e-20  Score=115.26  Aligned_cols=107  Identities=15%  Similarity=0.108  Sum_probs=89.7

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcC------------CCCCHHHHHHhcCCCccccHHHHHHHHH---hC
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQ------------TKNTILHINITSRKRKNVSTKFIEEILE---IC   68 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~------------~g~t~lh~a~~~~~~~~~~~~~~~~ll~---~~   68 (121)
                      ....||||.|+..|+.++++.|++.+.........            .|.||||+|+..+     +.+++++|++   . 
T Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~-----~~~~v~~Ll~~~~~-  161 (256)
T 2etb_A           88 YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK-----QWDVVTYLLENPHQ-  161 (256)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT-----CHHHHHHHHHCSSC-
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC-----CHHHHHHHHhcccc-
Confidence            34779999999999999999999986554444331            1999999999998     6999999999   6 


Q ss_pred             ChhhhcccCCCCcHHHHHHH--hCCHH-------HHHHHHHhCCCC-------CCCCCCCCcCC
Q 044439           69 PSLLLKVNAKGDTPLQVAAK--FGHSD-------IVSVLIKEAKSA-------QHGNEEPERGL  116 (121)
Q Consensus        69 ~~~~~~~~~~~~tpL~~a~~--~g~~~-------~~~~Ll~~ga~~-------~~~~~~~~~~~  116 (121)
                      +.+.+..+..|.||||+|+.  .++.+       ++++|+++|+++       +..+..+.++.
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL  225 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL  225 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH
Confidence            77788889999999999999  78888       999999999998       66666665543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=7.2e-19  Score=112.96  Aligned_cols=95  Identities=16%  Similarity=0.158  Sum_probs=84.6

Q ss_pred             CCCCHHHHHHHHc---CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            4 VSIHPNLFKAAAA---GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      ....||||.|+..   |+.++++.|++.+......+. .|.||||+|+..+     +.++++.|++. +.+.+..|..|.
T Consensus       167 ~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-~g~TpLh~A~~~g-----~~~~v~~Ll~~-gad~~~~d~~g~  239 (278)
T 1dcq_A          167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALHYCCLTD-----NAECLKLLLRG-KASIEIANESGE  239 (278)
T ss_dssp             STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             cCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCccCCCC
Confidence            3467999999999   899999999998665555555 8999999999998     69999999998 677888999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSA  105 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~  105 (121)
                      ||||+|+..|+.+++++|+++|++.
T Consensus       240 tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          240 TPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.79  E-value=8.4e-19  Score=110.82  Aligned_cols=108  Identities=20%  Similarity=0.175  Sum_probs=89.8

Q ss_pred             CCCCCHHHHHHHHc---CChHHHHHHhhhhhhHhhhh----------cCCCCCHHHHHHhcCCCccccHHHHHHHHHhCC
Q 044439            3 PVSIHPNLFKAAAA---GNAEPFKKDIRRDEIESLLT----------AQTKNTILHINITSRKRKNVSTKFIEEILEICP   69 (121)
Q Consensus         3 ~~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~----------~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~   69 (121)
                      +....||||+|+..   |+.++++.|++.+.......          +..|.||||+|+..+     +.+++++|++. +
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-----~~~~v~~Ll~~-g  113 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR-----SLQCVKLLVEN-G  113 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT-----CHHHHHHHHHT-T
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC-----CHHHHHHHHHc-C
Confidence            34577999999999   99999999998855433211          136999999999998     69999999998 5


Q ss_pred             hhhhcccCC-------------CCcHHHHHHHhCCHHHHHHHHH---hCCCCCCCCCCCCcCC
Q 044439           70 SLLLKVNAK-------------GDTPLQVAAKFGHSDIVSVLIK---EAKSAQHGNEEPERGL  116 (121)
Q Consensus        70 ~~~~~~~~~-------------~~tpL~~a~~~g~~~~~~~Ll~---~ga~~~~~~~~~~~~~  116 (121)
                      ...+..+..             |.||||+|+..|+.+++++|++   .|++++..+..+..++
T Consensus       114 a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpL  176 (256)
T 2etb_A          114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL  176 (256)
T ss_dssp             CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHH
Confidence            666666665             9999999999999999999999   9999998887766543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.79  E-value=5.8e-19  Score=104.04  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..||||. +..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+
T Consensus        36 g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~  107 (156)
T 1bd8_A           36 GKTALQV-MMFGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTG-----FLDTLKVLVEH-GADVNVPDGTGALPIHL  107 (156)
T ss_dssp             SCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCSCCCCTTSCCHHHH
T ss_pred             CCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcC-----cHHHHHHHHHc-CCCCCCcCCCCCcHHHH
Confidence            3445555 555555555555544332222222 4555555555554     35555555554 33444445555555555


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      |+..|+.+++++|++. ++++..+..+
T Consensus       108 A~~~~~~~~v~~Ll~~-~~~~~~~~~g  133 (156)
T 1bd8_A          108 AVQEGHTAVVSFLAAE-SDLHRRDARG  133 (156)
T ss_dssp             HHHHTCHHHHHHHHTT-SCTTCCCTTS
T ss_pred             HHHhChHHHHHHHHhc-cCCCCcCCCC
Confidence            5555555555555555 4444444333

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.79  E-value=7.8e-20  Score=115.72  Aligned_cols=105  Identities=10%  Similarity=0.056  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhc-------------CCCCCHHHHHHhcCCCccccHHHHHHHHH---hC
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTA-------------QTKNTILHINITSRKRKNVSTKFIEEILE---IC   68 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-------------~~g~t~lh~a~~~~~~~~~~~~~~~~ll~---~~   68 (121)
                      ...||||+|+..|+.++++.|++.+........             ..|.||||+|+..+     +.+++++|++   . 
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-----~~~~v~~Ll~~~~~-  165 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN-----QPHIVHYLTENGHK-  165 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT-----CHHHHHHHHHCSSC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC-----CHHHHHHHHhcccc-
Confidence            567999999999999999999998655544441             36999999999998     6999999999   6 


Q ss_pred             ChhhhcccCCCCcHHHHHHHhCC---------HHHHHHHHHhCCCC-------CCCCCCCCcC
Q 044439           69 PSLLLKVNAKGDTPLQVAAKFGH---------SDIVSVLIKEAKSA-------QHGNEEPERG  115 (121)
Q Consensus        69 ~~~~~~~~~~~~tpL~~a~~~g~---------~~~~~~Ll~~ga~~-------~~~~~~~~~~  115 (121)
                      +...+.++..|.||||+|+..++         .+++++|+++|+++       +..+..+.++
T Consensus       166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp  228 (260)
T 3jxi_A          166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP  228 (260)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH
T ss_pred             CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH
Confidence            77788889999999999999888         79999999999988       4455555544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.79  E-value=9.1e-19  Score=112.59  Aligned_cols=106  Identities=17%  Similarity=0.206  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+. +..|.||||+
T Consensus       157 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-ga~~~~-~~~g~t~L~~  228 (285)
T 3d9h_A          157 LASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQ-----QRACVKKLLES-GADVNQ-GKGQDSPLHA  228 (285)
T ss_dssp             TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTT-----CHHHHHHHHHT-TCCTTC-CBTTBCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcC-----cHHHHHHHHHC-CCCCCC-CCCCCCHHHH
Confidence            56788888888888888888877554444444 7889999999888     58999999988 555554 7889999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+..|+.+++++|+++|++++..+..+.++..++
T Consensus       229 A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          229 VVRTASEELACLLMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence            9999999999999999999998888887776554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.79  E-value=1.5e-18  Score=111.60  Aligned_cols=75  Identities=17%  Similarity=0.274  Sum_probs=66.6

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+|+..|+.+++++|+++|++++..+..+.++..+
T Consensus       198 ~g~t~L~~A~~~g-----~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~  271 (299)
T 1s70_B          198 SGGTALHVAAAKG-----YTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV  271 (299)
T ss_dssp             TCCCHHHHHHHHT-----CHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTS
T ss_pred             CCCCHHHHHHHCC-----cHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            5789999999888     58999999987 66778889999999999999999999999999999999998888888776


Q ss_pred             C
Q 044439          119 P  119 (121)
Q Consensus       119 ~  119 (121)
                      +
T Consensus       272 A  272 (299)
T 1s70_B          272 A  272 (299)
T ss_dssp             C
T ss_pred             H
Confidence            5

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.79  E-value=1.2e-18  Score=106.41  Aligned_cols=107  Identities=15%  Similarity=0.075  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....+|||.|+..|+.++++.|++.........+..|.||||+|+..+     +.+++++|++.+....+..+..|.|||
T Consensus        70 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-----~~~~v~~Ll~~g~~~~~~~~~~g~t~L  144 (201)
T 3hra_A           70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-----HIDNVKLLLEDGREDIDFQNDFGYTAL  144 (201)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT-----CHHHHHHHHHHCCCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC-----CHHHHHHHHHcCCCCcCCCCCCCCCHH
Confidence            346789999999999999999996643222333347999999999998     699999999996578888899999999


Q ss_pred             HHHHHhCC-----HHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           84 QVAAKFGH-----SDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        84 ~~a~~~g~-----~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+|+..+.     .+++++|+++|++++..+..+.++
T Consensus       145 ~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  181 (201)
T 3hra_A          145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA  181 (201)
T ss_dssp             HHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCH
Confidence            99999988     999999999999999887766554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.79  E-value=1.5e-18  Score=107.52  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++.++...+..+..|.||||+
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   98 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSAD-----AQGVFQILIRNRATDLDARMHDGTTPLIL   98 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred             CCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence            44555555555555555555554332222222 4455555555544     34555555544332334444444444444


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      |+..|+.+++++|++.|++++..+
T Consensus        99 A~~~~~~~~~~~Ll~~g~~~~~~~  122 (223)
T 2f8y_A           99 AARLAVEGMLEDLINSHADVNAVD  122 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             HHHhCcHHHHHHHHHcCCCCcCcC
Confidence            444444444444444444444333

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.79  E-value=1.7e-18  Score=113.12  Aligned_cols=105  Identities=14%  Similarity=0.029  Sum_probs=82.8

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||+|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g-----~~~iv~~Ll~~-g~~~~~~~~~g~t~L  128 (351)
T 3utm_A           56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK-GGLVPLHNACSYG-----HYEVTELLLKH-GACVNAMDLWQFTPL  128 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHCC-----CHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            3456889999999999999888887554444444 7889999998888     58888988888 566677788888999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+|+..|+.+++++|+++|++++..+..+...
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A          129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence            99999999999999999988887766555443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.79  E-value=1.3e-18  Score=102.55  Aligned_cols=101  Identities=21%  Similarity=0.243  Sum_probs=86.1

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhh-hHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDE-IESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      .++||.|+..|+.+.++.|++... ...... ..|.||||+ +..+     +.+++++|++. +...+..+..|.||||+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~-~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQV-MMFG-----STAIALELLKQ-GASPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHH-SCTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccC-CCCCcHHHH-HHcC-----CHHHHHHHHHC-CCCCCCcCCCCCCHHHH
Confidence            478999999999999999998721 233333 479999999 8777     69999999998 66778889999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      |+..|+.+++++|++.|++++..+..+..+
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADVNVPDGTGALP  104 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             HHHcCcHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            999999999999999999998877766554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.79  E-value=1.2e-18  Score=111.62  Aligned_cols=108  Identities=14%  Similarity=0.184  Sum_probs=81.9

Q ss_pred             CCCCCHHHHHHHHcCChHHHHHHhhhhh-hHhhh-------------------------------------hcCCCCCHH
Q 044439            3 PVSIHPNLFKAAAAGNAEPFKKDIRRDE-IESLL-------------------------------------TAQTKNTIL   44 (121)
Q Consensus         3 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~-~~~~~-------------------------------------~~~~g~t~l   44 (121)
                      +....||||+|+..|+.++++.|++.+. .....                                     .+..|.|||
T Consensus       108 d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL  187 (276)
T 4hbd_A          108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTAL  187 (276)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHH
Confidence            3567799999999999999999998653 11111                                     112477888


Q ss_pred             HHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCcCC
Q 044439           45 HINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK-EAKSAQHGNEEPERGL  116 (121)
Q Consensus        45 h~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~-~ga~~~~~~~~~~~~~  116 (121)
                      |+|+..+     +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++ .|++++..+..+.++.
T Consensus       188 h~A~~~g-----~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL  254 (276)
T 4hbd_A          188 MLAVSHG-----RVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL  254 (276)
T ss_dssp             HHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHHHHcC-----CHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHH
Confidence            8888777     58888888887 66677778888888888888888888888888 7888887776665543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.78  E-value=8.7e-19  Score=110.76  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      .|.||||+|+..+     +.+++++|++. +...+..+..|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus       123 ~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  191 (253)
T 1yyh_A          123 DGTTPLILAARLA-----VEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  191 (253)
T ss_dssp             TCCCHHHHHHHHT-----CSSHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCcHHHHHHHcC-----hHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            3444444444444     24455555554 334444555556666666666666666666666665555444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.78  E-value=4.6e-19  Score=117.03  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=81.2

Q ss_pred             CCCHHHHHHHHcC--ChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChh-----hhcccC
Q 044439            5 SIHPNLFKAAAAG--NAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSL-----LLKVNA   77 (121)
Q Consensus         5 ~~~~~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~~   77 (121)
                      ...|+||+|+..|  +.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +..     .+..+.
T Consensus       137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~A~~~g-----~~~~v~~Ll~~-g~~~~~~~~~~~~~  209 (364)
T 3ljn_A          137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAMEFR-----NREALDLMMDT-VPSKSSLRLDYANK  209 (364)
T ss_dssp             SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHH-CSCSSSCCTTCCCT
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcC-----CHHHHHHHHhc-ccccccccccccCC
Confidence            4568888888888  88888888887554444444 7888888888887     58888888887 334     667788


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           78 KGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        78 ~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      .|.||||+|+..|+.+++++|+++|++++..+..+.++
T Consensus       210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp  247 (364)
T 3ljn_A          210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP  247 (364)
T ss_dssp             TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            88888888888888888888888888888777666554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.78  E-value=1.2e-18  Score=117.46  Aligned_cols=104  Identities=23%  Similarity=0.236  Sum_probs=79.2

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...+|||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +.+.+.++..|.||||
T Consensus       277 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g-----~~~~v~~Ll~~-gad~n~~~~~g~t~L~  349 (437)
T 1n11_A          277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYG-----NIKLVKFLLQH-QADVNAKTKLGYSPLH  349 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSS-----CSHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCC-CCCCHHHHHHHcC-----cHHHHHHHHhc-CCCCCCCCCCCCCHHH
Confidence            355677777777777777777766443333333 6888888888877     58888888887 6667777888889999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      +|+..|+.+++++|+++|++++..+..+.++
T Consensus       350 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  380 (437)
T 1n11_A          350 QAAQQGHTDIVTLLLKNGASPNEVSSDGTTP  380 (437)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             HHHHCChHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            9999999999999999998888777666554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.78  E-value=2.6e-18  Score=106.99  Aligned_cols=99  Identities=18%  Similarity=0.177  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhh----hcccCCCC
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLL----LKVNAKGD   80 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~~~~~   80 (121)
                      ..||||.|+..|+.++++.|++. +......+ ..|.||||+|+..+     +.+++++|++.+....    ...+..|.
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~-~~g~t~L~~A~~~g-----~~~~v~~Ll~~~~~~~~~~~~~~~~~g~   76 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYD-----NLEAAMVLMEAAPELVFEPMTSELYEGQ   76 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCC-TTSCCHHHHHHHTT-----CHHHHHHHHHHCGGGGGCCCCSTTTTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcC-----CHHHHHHHHHcCchhccccccccCCCCc
Confidence            57899999999999999999987 44444444 48999999999998     6999999999854332    45577999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      ||||+|+..|+.+++++|+++|++++....
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  106 (232)
T 2rfa_A           77 TALHIAVINQNVNLVRALLARGASVSARAT  106 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcccC
Confidence            999999999999999999999999887554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.78  E-value=1e-18  Score=112.41  Aligned_cols=100  Identities=21%  Similarity=0.176  Sum_probs=82.0

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||+|+..|+.++++.|++.+......   .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~d~~g~t~L   99 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLE-----DTKIVKILLFS-GLDDSQFDDKGNTAL   99 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSS-----SCHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCCcCCCCCcHH
Confidence            45678999999999999999999875433222   5889999999888     58899999988 666777888999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      |+|+..|+.+++++|+++|++++..+..+
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  128 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTG  128 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGGGGCSSSG
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCC
Confidence            99999999999999999999887766554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.78  E-value=2.1e-18  Score=112.85  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=82.0

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCC---------------C---------------
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRK---------------R---------------   53 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~---------------~---------------   53 (121)
                      ....||||+|+..|+.++++.|++.+......+. .|.||||+|+..++               .               
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence            4566788888888888888888876543333332 45555555555432               0               


Q ss_pred             ------ccccHHHHHHHHHhCCh--------------------------------------------hhhcccCCCCcHH
Q 044439           54 ------KNVSTKFIEEILEICPS--------------------------------------------LLLKVNAKGDTPL   83 (121)
Q Consensus        54 ------~~~~~~~~~~ll~~~~~--------------------------------------------~~~~~~~~~~tpL   83 (121)
                            ..|+.+++++|++....                                            ..+.++..|.|||
T Consensus       208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpL  287 (327)
T 1sw6_A          208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  287 (327)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHH
Confidence                  01256777777665110                                            3667788999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|+..|+.+++++|+++|++++..+..+.+++.++
T Consensus       288 h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          288 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            999999999999999999999999999888887665

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.78  E-value=3.5e-18  Score=108.91  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             CCCCCHHHHHHHHc---CChHHHHHHhhhhhhHh-------hh---hcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCC
Q 044439            3 PVSIHPNLFKAAAA---GNAEPFKKDIRRDEIES-------LL---TAQTKNTILHINITSRKRKNVSTKFIEEILEICP   69 (121)
Q Consensus         3 ~~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~-------~~---~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~   69 (121)
                      +....||||+|+..   |+.++++.|++.+....       ..   .+..|.||||+|+..+     +.+++++|++. +
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g-----~~~~v~~Ll~~-g  124 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-----NMTLVTLLVEN-G  124 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTT-----CHHHHHHHHHT-T
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcC-----CHHHHHHHHHC-C
Confidence            34678999999987   99999999999854311       10   1237999999999998     69999999998 6


Q ss_pred             hhhhcccC--------------CCCcHHHHHHHhCCHHHHHHHHH---hCCCCCCCCCCCCcCC
Q 044439           70 SLLLKVNA--------------KGDTPLQVAAKFGHSDIVSVLIK---EAKSAQHGNEEPERGL  116 (121)
Q Consensus        70 ~~~~~~~~--------------~~~tpL~~a~~~g~~~~~~~Ll~---~ga~~~~~~~~~~~~~  116 (121)
                      ...+..+.              .|.||||+|+..|+.+++++|++   .|++++..+..+.+++
T Consensus       125 a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpL  188 (273)
T 2pnn_A          125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL  188 (273)
T ss_dssp             CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHH
Confidence            66666675              79999999999999999999999   9999998877766543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.78  E-value=3.5e-19  Score=113.58  Aligned_cols=98  Identities=9%  Similarity=0.058  Sum_probs=84.6

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhc-------------CCCCCHHHHHHhcCCCccccHHHHHHHHH---h
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTA-------------QTKNTILHINITSRKRKNVSTKFIEEILE---I   67 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-------------~~g~t~lh~a~~~~~~~~~~~~~~~~ll~---~   67 (121)
                      ....||||+|+..|+.++++.|++.+........             ..|.||||+|+..+     +.+++++|++   .
T Consensus        99 ~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-----~~~~v~~Ll~~~~~  173 (273)
T 2pnn_A           99 YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-----QLAIVKFLLQNSWQ  173 (273)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT-----CHHHHHHHHHCSSC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC-----CHHHHHHHHhcccC
Confidence            3577999999999999999999998554443332             15999999999998     6999999999   6


Q ss_pred             CChhhhcccCCCCcHHHHHHHhCC---------HHHHHHHHHhCCCCCC
Q 044439           68 CPSLLLKVNAKGDTPLQVAAKFGH---------SDIVSVLIKEAKSAQH  107 (121)
Q Consensus        68 ~~~~~~~~~~~~~tpL~~a~~~g~---------~~~~~~Ll~~ga~~~~  107 (121)
                       +...+.++..|.||||+|+..|+         .+++++|+++|++++.
T Consensus       174 -gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          174 -PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             -CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             -CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence             77788889999999999999998         7999999999998864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=1.5e-18  Score=97.25  Aligned_cols=88  Identities=17%  Similarity=0.257  Sum_probs=76.7

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|+.. +...+..+..|.|||
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~-~g~tpLh~A~~~~-----~~~~v~~Ll~~-ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNG-----HLEVVKLLLEA-GADVXAQDKFGKTAF   94 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCccccccCCCcHH
Confidence            3466899999999999999999988554444444 8999999999988     69999999998 667788899999999


Q ss_pred             HHHHHhCCHHHHHHH
Q 044439           84 QVAAKFGHSDIVSVL   98 (121)
Q Consensus        84 ~~a~~~g~~~~~~~L   98 (121)
                      ++|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999986

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=4.4e-19  Score=117.88  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=83.4

Q ss_pred             CHHHHHHHHc-CChHHHHHHhhhhhhHhhhhc-CCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            7 HPNLFKAAAA-GNAEPFKKDIRRDEIESLLTA-QTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         7 ~~~l~~a~~~-g~~~~~~~ll~~~~~~~~~~~-~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      .++||.|+.. |+.++++.|++.+........ ..|.||||+|+..+     +.+++++|++. +.+++..+..|.||||
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g-----~~~iv~~LL~~-Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN-----SLLACEFLLQN-GANVNQADSAGRGPLH  273 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCC-----CHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence            3578889988 999999988887655544431 37889999999887     58889999888 6677778888999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +|+..|+.+++++|+++|++++..+..+..++
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL  305 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPL  305 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHH
Confidence            99999999999999999998888777666543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.77  E-value=2.6e-18  Score=106.60  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhh--hhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRD--EIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~--~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ..+|||.|+..|+.++++.|++.+  ....... ..|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        72 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~~~~~g~t~L  144 (228)
T 2dzn_A           72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKK-----WFEVSQFLIEN-GASVRIKDKFNQIPL  144 (228)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCC-TTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCSCCCCTTSCCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCcccccCC-cCCCCHHHHHHHcC-----CHhHHHHHHHc-CCCccccCCCCCCHH
Confidence            345555555555555555555543  1111112 24555555555555     35555555555 444445555566666


Q ss_pred             HHHHHhCCHHHHHHHHHhC-CCCCCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEA-KSAQHGNEEPE  113 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~g-a~~~~~~~~~~  113 (121)
                      |+|+..|+.+++++|++.| ++++..+..+.
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~  175 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGW  175 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSC
T ss_pred             HHHHHcCCHHHHHHHHhcCcccccCcCCCCC
Confidence            6666666666666666665 55555444443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.77  E-value=1.6e-18  Score=116.81  Aligned_cols=104  Identities=19%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~A~~~g-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L   84 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAG-----HTEVAKYLLQN-KAKVNAKAKDDQTPL   84 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS-CCCCHHHHHHHHT-----CHHHHHHHHHH-TCCSSCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHhC-CCCCCCCCCCCCCHH
Confidence            3466889999999999999999887544444344 7889999999888     58899999988 566677788899999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCc
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPER  114 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~  114 (121)
                      |+|+..|+.+++++|+++|++++..+..+..
T Consensus        85 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  115 (437)
T 1n11_A           85 HCAARIGHTNMVKLLLENNANPNLATTAGHT  115 (437)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC
T ss_pred             HHHHHCCCHHHHHHHHhCCCCCCCCCCCCCc
Confidence            9999999999999999999888776655543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.77  E-value=2.8e-18  Score=110.30  Aligned_cols=99  Identities=23%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....|+||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGG-----HLSCVKILLKH-GAQVNGVTADWHTPL  129 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCSSCCCTTCCCHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHCC-----cHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            4466889999999999999988887544444344 7889999998888     58888888887 566677788888899


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      |+|+..|+.+++++|++.|++++.+.
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~  155 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGASVQPES  155 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCSC
T ss_pred             HHHHHcCHHHHHHHHHHCCCCCCCCC
Confidence            98888888888888888888776544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=1.4e-18  Score=111.63  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=88.0

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhh-----hcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLL-----TAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~-----~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      .+|+.|+..|+.+.+..+++.+......     .+..|.||||+|+..++  .++.+++++|++. +..++..|..|.||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~--~~~~~~v~~Ll~~-ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD--RTSLHIVDFLVQN-SGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC--TTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcc--cchHHHHHHHHHC-CCCccccCCCCCCH
Confidence            4699999999999999998875432211     12479999999999831  1169999999999 67788889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      ||+|+..|+.+++++|+++|++++..+..+.+++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  242 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPL  242 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHH
Confidence            9999999999999999999999999888776654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.77  E-value=1e-18  Score=113.34  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=81.3

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhh-----hcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLL-----TAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~-----~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      ++|+.|+..|+.+.++.++..+......     .+..|.||||+|+..+.  .++.+++++|++. +..++..+..|.||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~--~~~~~iv~~Ll~~-gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVAN--QASLPLVDFIIQN-GGHLDAKAADGNTA  229 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCC--TTTHHHHHHHHHH-SSCTTCCCTTCCCH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcc--cCcHHHHHHHHhc-CCCCCCCCCCCCCH
Confidence            5689999999999888888765443331     23378899999987621  1258889999888 66677788889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      ||+|+..|+.+++++|+++|++++..+..+.+++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL  263 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL  263 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            9999999999999999999998888777666543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.77  E-value=1.5e-18  Score=113.35  Aligned_cols=106  Identities=16%  Similarity=0.091  Sum_probs=91.3

Q ss_pred             CCCCHHHHHHHHc---CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            4 VSIHPNLFKAAAA---GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      ....++||.|+..   +..++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~n~~d~~g~  281 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERA-----HNDVMEVLHKH-GAKMNALDSLGQ  281 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCCcCCCCC
Confidence            4467899999999   557899999887655544444 8999999999998     69999999998 677888899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      ||||+|+..|+.+++++|+++|++++..+..+.++.
T Consensus       282 t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal  317 (351)
T 3utm_A          282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA  317 (351)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChh
Confidence            999999999999999999999999999888776654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.77  E-value=6.3e-19  Score=121.02  Aligned_cols=104  Identities=19%  Similarity=0.235  Sum_probs=89.1

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhh-----hcCCCCCHHHHHHh---cCCCccccHHHHHHHHHhCChhhhcccCCC
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLL-----TAQTKNTILHINIT---SRKRKNVSTKFIEEILEICPSLLLKVNAKG   79 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~-----~~~~g~t~lh~a~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~   79 (121)
                      ..||.|+..|+.+.++.|++.+......     .+..|.||||+|+.   .+     +.+++++|++. +.+++..|..|
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g-----~~~~v~~Ll~~-ga~vn~~d~~g  207 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA-----SLPLVDFIIQN-GGHLDAKAADG  207 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTT-----THHHHHHHHHH-SCCTTCCCSSS
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccc-----cHHHHHHHHHc-CCCCCccCCCC
Confidence            5799999999999999999986544332     13479999999976   44     69999999999 67788899999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           80 DTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        80 ~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      .||||+|+..|+.+++++|+++||+++..+..+.+++.
T Consensus       208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~  245 (497)
T 3lvq_E          208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD  245 (497)
T ss_dssp             CCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999998887766543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.77  E-value=2.6e-18  Score=107.40  Aligned_cols=106  Identities=19%  Similarity=0.161  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCC-----hhhhcccCC
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICP-----SLLLKVNAK   78 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~~~   78 (121)
                      ....||||+|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|+..+.     ......+..
T Consensus        43 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (236)
T 1ikn_D           43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLACEQG-----CLASVGVLTQSCTTPHLHSILKATNYN  116 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHHHHHHHHT-----CHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC-----CHHHHHHHHhcccchhHHHHhhccCCC
Confidence            3467899999999999999999988654444444 8999999999998     6999999999743     225677889


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCC-CCCcC
Q 044439           79 GDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNE-EPERG  115 (121)
Q Consensus        79 ~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~-~~~~~  115 (121)
                      |.||||+|+..|+.+++++|+++|++++..+. .+..+
T Consensus       117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tp  154 (236)
T 1ikn_D          117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA  154 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence            99999999999999999999999999887665 55443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.76  E-value=4.9e-18  Score=105.98  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=43.4

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      +|||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++.++...+..+..|.||||+|+
T Consensus        46 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  119 (237)
T 3b7b_A           46 TPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKG-----HYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT  119 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCCCCCT-TSCCHHHHHHHTT-----CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcC-----CHHHHHHHHhCCCCCcccCCCCCCCHHHHHH
Confidence            344444444444444444433222211111 3444444444444     3455555554432344444445555555555


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCCC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      ..|+.+++++|++.|++++..+.
T Consensus       120 ~~~~~~~~~~Ll~~g~~~~~~~~  142 (237)
T 3b7b_A          120 EYKHVDLVKLLLSKGSDINIRDN  142 (237)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcCCHHHHHHHHHCCCCCCccCC
Confidence            55555555555555555444333

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.76  E-value=1.4e-18  Score=111.33  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=82.6

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++..+.+.+..|..|.|||
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g-----~~~iv~~Ll~~~gad~~~~d~~g~TpL  254 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHG-----HKEIAGLLLAVPSCDISLTDRDGSTAL  254 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCC-----CHHHHHHHHhcCCCCCcCcCCCCCCHH
Confidence            3477999999999999999999998665555555 8999999999998     699999999944778888999999999


Q ss_pred             HHHHHhCCHHHHHHHHHhC
Q 044439           84 QVAAKFGHSDIVSVLIKEA  102 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~g  102 (121)
                      ++|+..|+.+++++|++++
T Consensus       255 ~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          255 MVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999885

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.76  E-value=7.3e-18  Score=107.25  Aligned_cols=96  Identities=15%  Similarity=0.182  Sum_probs=47.4

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      ++||.|+..|+.++++.|++.+.......+..|.||||+|+..+     +.+++++|++. +...+..+..|.||||+|+
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-----~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-----REDIVELLLRH-GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC-----CHHHHHHHHHc-CCCCcccCCCCCCHHHHHH
Confidence            45555555555555555555433222221224455555555554     35555555554 3334444555555555555


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      ..|+.+++++|+++|++++..+
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~  102 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVNECD  102 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBC
T ss_pred             HcCCHHHHHHHHHcCCCCCccC
Confidence            5555555555555555544433

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.76  E-value=3.2e-18  Score=108.32  Aligned_cols=107  Identities=21%  Similarity=0.214  Sum_probs=87.8

Q ss_pred             CCCCHHHHHHH---HcCChHHHHHHhhhhhhHhh--------hh--cCCCCCHHHHHHhcCCCccccHHHHHHHHHhCCh
Q 044439            4 VSIHPNLFKAA---AAGNAEPFKKDIRRDEIESL--------LT--AQTKNTILHINITSRKRKNVSTKFIEEILEICPS   70 (121)
Q Consensus         4 ~~~~~~l~~a~---~~g~~~~~~~ll~~~~~~~~--------~~--~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~   70 (121)
                      ....||||.|+   ..|+.++++.|++.+.....        ..  +..|.||||+|+..+     +.+++++|++. +.
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga  117 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR-----CKHYVELLVEK-GA  117 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTT-----CHHHHHHHHHT-TC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcC-----CHHHHHHHHhC-CC
Confidence            44779999999   67999999999987543111        11  126899999999998     69999999998 66


Q ss_pred             hhhccc--------------CCCCcHHHHHHHhCCHHHHHHHHH---hCCCCCCCCCCCCcCC
Q 044439           71 LLLKVN--------------AKGDTPLQVAAKFGHSDIVSVLIK---EAKSAQHGNEEPERGL  116 (121)
Q Consensus        71 ~~~~~~--------------~~~~tpL~~a~~~g~~~~~~~Ll~---~ga~~~~~~~~~~~~~  116 (121)
                      ..+..+              ..|.||||+|+..|+.+++++|++   .|++++..+..+.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpL  180 (260)
T 3jxi_A          118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL  180 (260)
T ss_dssp             CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHH
Confidence            666666              589999999999999999999999   9999998877766543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.76  E-value=6.5e-18  Score=107.48  Aligned_cols=96  Identities=16%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             CHHHHHHHHcCC----hHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            7 HPNLFKAAAAGN----AEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         7 ~~~l~~a~~~g~----~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      .++||.|+..++    .++++.|++.+......+. .|.||||+|+..+     +.+++++|++..+...+..+..|.||
T Consensus       183 ~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~~g~~~~~~~~~g~t~  256 (285)
T 1wdy_A          183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKK-----HLGLVQRLLEQEHIEINDTDSDGKTA  256 (285)
T ss_dssp             CCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHSSSCCTTCCCTTSCCH
T ss_pred             CCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcC-----CHHHHHHHHhccCCCccccCCCCCcH
Confidence            344444444444    4444444443222222222 4566666666655     46666666663355555556666666


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHG  108 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~  108 (121)
                      |++|+..|+.+++++|+++|++++..
T Consensus       257 l~~A~~~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          257 LLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence            66666666666666666666655543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.76  E-value=4.4e-18  Score=108.40  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             CCCCCHHHHHHHHcCChHHHHHHhhhhhh---HhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCC
Q 044439            3 PVSIHPNLFKAAAAGNAEPFKKDIRRDEI---ESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKG   79 (121)
Q Consensus         3 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~   79 (121)
                      +....||||.|+..|+.++++.|++.+..   ..... ..|.||||+|+..+     +.+++++|++. +...+..+..|
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~~~~g   78 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-DLGQTALHLAAILG-----EASTVEKLYAA-GAGVLVAERGG   78 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-TTSCCHHHHHHHHT-----CHHHHHHHHHT-TCCSSCCCTTS
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCCCCCC
Confidence            35678999999999999999999987554   22233 47999999999998     69999999998 66777889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCCCCCC
Q 044439           80 DTPLQVAAKFGHSDIVSVLIKEAKSAQH  107 (121)
Q Consensus        80 ~tpL~~a~~~g~~~~~~~Ll~~ga~~~~  107 (121)
                      .||||+|+..|+.+++++|++.|++.+.
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~  106 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPR  106 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCC
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCch
Confidence            9999999999999999999999986543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.75  E-value=5.6e-18  Score=112.52  Aligned_cols=107  Identities=17%  Similarity=0.141  Sum_probs=84.5

Q ss_pred             CCCCHHHHHHHHcC---ChHHHHHHhhhhhhHhh-------hhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhh
Q 044439            4 VSIHPNLFKAAAAG---NAEPFKKDIRRDEIESL-------LTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLL   73 (121)
Q Consensus         4 ~~~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~-------~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~   73 (121)
                      ....++||.|+..+   +.++++.|++.+.....       ..+..|.||||+|+..+     +.+++++|+..++...+
T Consensus       233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g-----~~~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS-----NMPIVKYLVGEKGSNKD  307 (373)
T ss_dssp             TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC-----CHHHHHHHHHHSCCCTT
T ss_pred             CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhC-----CHHHHHHHHHhcCCCcc
Confidence            34556777777776   67777777766433221       11236899999999988     69999999988668888


Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           74 KVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        74 ~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..+.+.
T Consensus       308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~  349 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA  349 (373)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence            899999999999999999999999999999999887766554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.75  E-value=2.6e-19  Score=112.11  Aligned_cols=101  Identities=15%  Similarity=0.068  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc-CCCCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN-AKGDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~tp   82 (121)
                      ....||||+|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+ ..|.||
T Consensus        52 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~-~g~tpLh~A~~~g-----~~~~v~~Ll~~-ga~~~~~~~~~g~tp  124 (229)
T 2vge_A           52 EEGITALHNAICGANYSIVDFLITAGANVNSPDS-HGWTPLHCAASCN-----DTVICMALVQH-GAAIFATTLSDGATA  124 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHTT-TCCTTCCCSSTTCCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCcccccCCCCCCH
Confidence            4567999999999999999999998655555444 8999999999988     69999999998 55555554 699999


Q ss_pred             HHHH--HHhCCHHHHHHHHHhCCCCCCCCCC
Q 044439           83 LQVA--AKFGHSDIVSVLIKEAKSAQHGNEE  111 (121)
Q Consensus        83 L~~a--~~~g~~~~~~~Ll~~ga~~~~~~~~  111 (121)
                      |++|  +..|+.+++++|++.|++++..+..
T Consensus       125 L~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~  155 (229)
T 2vge_A          125 FEKCDPYREGYADCATYLADVEQSMGLMNSG  155 (229)
T ss_dssp             GGGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred             HHHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence            9999  9999999999999999998876543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.75  E-value=5e-18  Score=110.16  Aligned_cols=94  Identities=20%  Similarity=0.153  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHc---CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            4 VSIHPNLFKAAAA---GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      ....|+||+|+..   |+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +.+.+..|..|.
T Consensus       188 ~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~-~G~TpLh~A~~~g-----~~~~v~~Ll~~-gad~~~~d~~G~  260 (301)
T 2b0o_E          188 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYN-----QPDCLKLLLKG-RALVGTVNEAGE  260 (301)
T ss_dssp             SCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCCSCCCTTSC
T ss_pred             CCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCC
Confidence            3466899999997   899999999998665555454 8999999999998     69999999998 677888899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      |||++|+..|+.+++++|+++|++
T Consensus       261 TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          261 TALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999999999985

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=102.60  Aligned_cols=102  Identities=20%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++||.|+..|+.++++.|++.+..........|.||||+|+..+     +.+++++|++. +...+..+..|.|||+
T Consensus        41 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g~t~l~  114 (240)
T 3eu9_A           41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG-----HLSMVVQLMKY-GADPSLIDGEGCSCIH  114 (240)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC-----CHHHHHHHHHc-CCCCcccCCCCCCHHH
Confidence            34567777777777777777776644333333334677777777766     47777777776 4555566777777777


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      +|+..|+.+++++|++.|++++..+..+
T Consensus       115 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g  142 (240)
T 3eu9_A          115 LAAQFGHTSIVAYLIAKGQDVDMMDQNG  142 (240)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHcCHHHHHHHHHhcCCCccccCCCC
Confidence            7777777777777777777666555444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.74  E-value=3.5e-17  Score=108.02  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhh----hhhHhhh----------------hcCCCCCHHHHHHhcCCCccccHHHHHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRR----DEIESLL----------------TAQTKNTILHINITSRKRKNVSTKFIEEI   64 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~----~~~~~~~----------------~~~~g~t~lh~a~~~~~~~~~~~~~~~~l   64 (121)
                      ...+|||.|+..|+.++++.|++.    +......                .+..|.||||+|+..+..   +.+++++|
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~~~v~~L  159 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPE---YLEMIKIL  159 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGG---GHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCc---hHHHHHHH
Confidence            455677777777777777777765    2222220                223688999999987710   28999999


Q ss_pred             HHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCC-----CCCCCCCCCcCC
Q 044439           65 LEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKS-----AQHGNEEPERGL  116 (121)
Q Consensus        65 l~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~-----~~~~~~~~~~~~  116 (121)
                      ++. +...+..+..|.||||+|+..|+.+++++|+++|++     ++..+..+...+
T Consensus       160 l~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L  215 (364)
T 3ljn_A          160 VQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL  215 (364)
T ss_dssp             HHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred             HHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH
Confidence            998 667778899999999999999999999999999998     777666665554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.74  E-value=2.1e-17  Score=103.24  Aligned_cols=93  Identities=13%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhh----hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCC
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRR----DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKG   79 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~----~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~   79 (121)
                      ....++||.|+..|+.++++.|++.    +......+ ..|.||||+|+..+     +.+++++|++. +...+..+..|
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~~~~~~~g   79 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITT-----LPSVVRLLVTA-GASPMALDRHG   79 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTS
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc-ccCCCHHHHHHHcC-----CHHHHHHHHHc-CCCccccCCCC
Confidence            3455666666666666666666652    11111112 24666666666665     46666666665 44444555666


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCC
Q 044439           80 DTPLQVAAKFGHSDIVSVLIKEAK  103 (121)
Q Consensus        80 ~tpL~~a~~~g~~~~~~~Ll~~ga  103 (121)
                      .||||+|+..|+.+++++|++.++
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~  103 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAA  103 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            666666666666666666666655

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.74  E-value=2.8e-17  Score=107.52  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCCh---------------
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPS---------------   70 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~---------------   70 (121)
                      ..++||.|+..|++++|+.|++.+..........|+||||+|+..+     +.+++++|++.+..               
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g-----~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-----REDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-----CHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcC-----CHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            3578999999999999999999876555555546899999999998     69999999987432               


Q ss_pred             -----------------hhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCC
Q 044439           71 -----------------LLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEE  111 (121)
Q Consensus        71 -----------------~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~  111 (121)
                                       ..+..+..|.|||++|+..|+.+++++|+++|++++.....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~  157 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT  157 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc
Confidence                             23456788999999999999999999999999998865543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.74  E-value=1.7e-19  Score=109.79  Aligned_cols=102  Identities=12%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      ++|+.|+..|+.+.++.++..+.  ....+..|+||||+|+..++. .++.+++++|+.. +++++.++..|.||||+|+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~-~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNND-EARYKISMFLINK-GADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCH-HHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCc-chHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Confidence            34666666666666666655421  122212466666666665520 0013466666665 5555666666666666666


Q ss_pred             HhCC------HHHHHHHHHhCCCCCCCCCCCC
Q 044439           88 KFGH------SDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        88 ~~g~------~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      ..|+      .+++++|+++|++++..+..+.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            6655      3556666666666666554443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.74  E-value=1.9e-18  Score=108.59  Aligned_cols=105  Identities=14%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ..+.||||.|+..++.+.++.+++.+..... +. .+.|+||+|+..+     +.++++.|++. +...+..+..|.|||
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~-~~~t~L~~A~~~g-----~~~~v~~Ll~~-g~~~~~~d~~g~t~L   74 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NP-LPLALLLDSSLEG-----EFDLVQRIIYE-VDDPSLPNDEGITAL   74 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHT-----CHHHHHHHTST-TSSCCCCCTTSCCHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc-Cc-hhhHHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            3578999999999999999999998655443 34 7899999999998     59999999988 557788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      |+|+..|+.+++++|+++|++++..+..+.+++
T Consensus        75 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL  107 (239)
T 1ycs_B           75 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL  107 (239)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            999999999999999999999998877666543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.73  E-value=4.5e-18  Score=103.51  Aligned_cols=111  Identities=8%  Similarity=-0.049  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHcCCh----HHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCcc-ccHHHHHHHHHhCChhhhcccCCC
Q 044439            5 SIHPNLFKAAAAGNA----EPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKN-VSTKFIEEILEICPSLLLKVNAKG   79 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~   79 (121)
                      ...||||+|+..|+.    ++++.|++.+......+. .|+||||+|+..++... ...+++++|+.. +.+++.+|..|
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g  114 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPY  114 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT-TCCCTHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGG
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCc
Confidence            467999999999985    489999998776666555 89999999998873210 115789999998 77888899999


Q ss_pred             C-cHHHHHHHhCCH-----HHHHHHHH-hCCCCCCCCCCCCcCCC
Q 044439           80 D-TPLQVAAKFGHS-----DIVSVLIK-EAKSAQHGNEEPERGLK  117 (121)
Q Consensus        80 ~-tpL~~a~~~g~~-----~~~~~Ll~-~ga~~~~~~~~~~~~~~  117 (121)
                      . ||||+|+..+..     +++++|++ .|++++..+..|.++++
T Consensus       115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A          115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             CchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            9 999999998884     48999999 99999999988876654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.73  E-value=1.6e-17  Score=106.78  Aligned_cols=97  Identities=19%  Similarity=0.189  Sum_probs=43.4

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCC-CCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTK-NTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g-~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      .||||+|+..|+.++++.|++.+........ .| .||||+|+..+     +.+++++|++.+.....  ...|.||||+
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~-----~~~~v~~Ll~~g~~~~~--~~~g~t~L~~  167 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLN-----DVSIVSYFLSEIPSTFD--LAILLSCIHI  167 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTT-----CHHHHHHHHTTSCTTCC--CSTHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcC-----CHHHHHHHHhCCCcccc--ccCCccHHHH
Confidence            3444444444444444444444332222222 33 34555544444     34444544444221100  1144555555


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEE  111 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~  111 (121)
                      |+..|+.+++++|+++|++++..+..
T Consensus       168 A~~~g~~~~v~~Ll~~gad~n~~~~~  193 (285)
T 3kea_A          168 TIKNGHVDMMILLLDYMTSTNTNNSL  193 (285)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCTTCCC
T ss_pred             HHHcChHHHHHHHHHcCCCCCcccCC
Confidence            55555555555555555555544433

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.73  E-value=3.3e-17  Score=102.02  Aligned_cols=104  Identities=16%  Similarity=0.088  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++|+.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++.+.......+..+.|||+
T Consensus         8 ~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINN-----RIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             GGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC-CCCCHHHHHHHhC-----CHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            456789999999999999999998654444444 7999999999998     6999999999865555555666999999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCc
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPER  114 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~  114 (121)
                      +|+..|+.+++++|++.|++++..+..+..
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  111 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLIDGEGCS  111 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCC
Confidence            999999999999999999998876665544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.72  E-value=2e-18  Score=107.18  Aligned_cols=104  Identities=11%  Similarity=0.020  Sum_probs=75.7

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhh-hhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRR-DEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tp   82 (121)
                      ....|+||+|+..|+.++++.|++. +......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.||
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-~g~tpL~~A~~~~-----~~~~v~~Ll~~-ga~~~~~~~~g~t~  176 (222)
T 3ehr_A          104 KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKG-----YADIVQLLLAK-GARTDLRNIEKKLA  176 (222)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHH-TCCSCCCCTTSCCH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCccccCCCCCH
Confidence            4567999999999999999999987 444444444 8999999999998     69999999999 67778889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCc
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQHGNEEPER  114 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~  114 (121)
                      |++|+..|+.++++.|++.|+.....+..+.-
T Consensus       177 l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~l  208 (222)
T 3ehr_A          177 FDMATNAACASLLKKKQGTDAVRTLSNAEDYL  208 (222)
T ss_dssp             HHHCCSHHHHHHHC------------------
T ss_pred             HHHhcchhHHHHHHHHhccchhhhccchhhhc
Confidence            99999999999999999999988776654443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.72  E-value=2e-17  Score=108.16  Aligned_cols=93  Identities=11%  Similarity=0.039  Sum_probs=72.0

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhh-hhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRD-EIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ...||||.|+..|+.+.++.|+... ......+ ..|.||||+|+..+     +.+++++|++. ++++     ...+||
T Consensus       238 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d-~~G~TpL~~A~~~g-----~~~iv~~Ll~~-GAd~-----n~~~~L  305 (337)
T 4g8k_A          238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-SDGKTALLLAVELK-----LKKIAELLCKR-GAST-----DCGDLV  305 (337)
T ss_dssp             GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC-TTSCBHHHHHHHTT-----CHHHHHHHHTT-SCSS-----TTCCHH
T ss_pred             CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC-CCCCCHHHHHHHcC-----CHHHHHHHHHC-CCCC-----CCCCHH
Confidence            4568999999999999999988763 3333333 47999999999888     59999999988 4433     345699


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      ++|+..|+.+++++|+++||++|..+
T Consensus       306 ~~A~~~~~~~iv~~Ll~~GA~~d~~~  331 (337)
T 4g8k_A          306 MTARRNYDHSLVKVLLSHGAKEDFHP  331 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCC----
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence            99999999999999999999888644

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.71  E-value=4.1e-17  Score=108.47  Aligned_cols=94  Identities=18%  Similarity=0.120  Sum_probs=82.7

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....|+||+|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +.+.+..|..|.|||
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-~G~TpLh~A~~~g-----~~~~v~~LL~~-Gad~~~~d~~G~TpL  305 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATILG-----HTGLACLFLKR-GADLGARDSEGRDPL  305 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcC-----cHHHHHHHHHC-cCCCCCcCCCCCCHH
Confidence            4467899999999999999999998665555444 8999999999998     69999999998 677788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      |+|+..|+.+++++|+..+..
T Consensus       306 ~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          306 TIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999988753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.71  E-value=2e-17  Score=108.24  Aligned_cols=101  Identities=13%  Similarity=-0.025  Sum_probs=76.5

Q ss_pred             HHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHH
Q 044439            9 NLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAK   88 (121)
Q Consensus         9 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~   88 (121)
                      .+|.++..+..++++.|++.+.......+..|.||||+|+..+     +.+++++|++. +..++..+..|.||||+|+.
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g-----~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA-----NLELVKHLVKH-GSNRLYGDNMGESCLVKAVK  173 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            3577888888888888887755454423348999999999998     69999999998 67778889999999999999


Q ss_pred             hCC---HHHHHHHHHhC-CCCCCCCCCCCcC
Q 044439           89 FGH---SDIVSVLIKEA-KSAQHGNEEPERG  115 (121)
Q Consensus        89 ~g~---~~~~~~Ll~~g-a~~~~~~~~~~~~  115 (121)
                      .|+   .+++..|++++ ++++..+..+..+
T Consensus       174 ~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  204 (327)
T 1sw6_A          174 SVNNYDSGTFEALLDYLYPCLILEDSMNRTI  204 (327)
T ss_dssp             SSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             hcccccHHHHHHHHHhhhccccCCCCCCCCH
Confidence            888   57777777776 6667666655544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.71  E-value=3.6e-17  Score=108.66  Aligned_cols=93  Identities=15%  Similarity=0.114  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhh-hhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRD-EIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ...++||.|+..|+.++++.|++.+ ......+ ..|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d-~~g~TpL~~A~~~g-----~~~iv~~Ll~~-gad~~~~d~~g~t~l  350 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD-EDGKTPIMLAAQEG-----RIEVVMYLIQQ-GASVEAVDATDHTAR  350 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC-TTCCCHHHHHHHHT-----CHHHHHHHHHT-TCCSSCCCSSSCCHH
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcC-CCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCccCCCCCCCCHH
Confidence            5678999999999999999999875 3333334 48999999999998     69999999998 677788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      ++|+..|+.+++++|++++++
T Consensus       351 ~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          351 QLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999999999874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.68  E-value=2.4e-16  Score=85.56  Aligned_cols=72  Identities=22%  Similarity=0.367  Sum_probs=63.2

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      .|+||||+|+..+     +.+++++|++. +...+.++..|.||||+|+..|+.+++++|++.|++++..+..+.++.
T Consensus         1 ~g~t~L~~A~~~~-----~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l   72 (93)
T 1n0q_A            1 NGRTPLHLAARNG-----HLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL   72 (93)
T ss_dssp             --CCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcC-----CHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            3789999999998     59999999998 667788899999999999999999999999999999988877666543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.67  E-value=2e-16  Score=95.60  Aligned_cols=81  Identities=15%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||+|+..|+.++++.|++.+..........|+||||+|+..+     +.+++++|++. +...+.++..|.|||
T Consensus        74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~-----~~~~v~~Ll~~-ga~~~~~d~~g~tpl  147 (183)
T 3deo_A           74 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-----RPEVVEALVEL-GADIEVEDERGLTAL  147 (183)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT-----CHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC-----cHHHHHHHHHc-CCCCcCCCCCCCCHH
Confidence            456799999999999999999999866555555347999999999988     69999999999 677788899999999


Q ss_pred             HHHHHhC
Q 044439           84 QVAAKFG   90 (121)
Q Consensus        84 ~~a~~~g   90 (121)
                      ++|+..+
T Consensus       148 ~~A~~~~  154 (183)
T 3deo_A          148 ELAREIL  154 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.67  E-value=2.1e-16  Score=99.64  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=80.5

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..|+.++++.|++.+......+...|.||||+|+..+     +.+++++|+.. +...+..+..|.|||
T Consensus        75 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~d~~g~t~l  148 (244)
T 3ui2_A           75 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-----RPEVVEALVEL-GADIEVEDERGLTAL  148 (244)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence            446789999999999999999999866555555347999999999998     69999999998 677788899999999


Q ss_pred             HHHH----------------HhCCHHHHHHHHHhCC
Q 044439           84 QVAA----------------KFGHSDIVSVLIKEAK  103 (121)
Q Consensus        84 ~~a~----------------~~g~~~~~~~Ll~~ga  103 (121)
                      |+|+                ..|+.+++++|++.+.
T Consensus       149 ~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          149 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            8887                6688999999998744

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.65  E-value=1.5e-17  Score=96.19  Aligned_cols=93  Identities=12%  Similarity=0.092  Sum_probs=76.6

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....+|||.|+..|+.++++.|++.+........ .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        41 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~-----~~~~v~~Ll~~-ga~~~~~~~~g~tpl  113 (137)
T 3c5r_A           41 HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY-QNDSPLHDAAKNG-----HVDIVKLLLSY-GASRNAVNIFGLRPV  113 (137)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            4567899999999999999999988655444444 7899999999988     69999999998 677788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAK  103 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga  103 (121)
                      ++|+..+..+++.+|.+.++
T Consensus       114 ~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          114 DYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             GGCCCHHHHHHHSCC-----
T ss_pred             HHHhhccHHHHHhhcccccc
Confidence            99999988899888877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.64  E-value=1.4e-15  Score=86.40  Aligned_cols=79  Identities=13%  Similarity=-0.007  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||+|+..|+.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+..+..|.|||
T Consensus        38 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~tpL~~A~~~~-----~~~~v~~Ll~~-ga~~~~~~~~g~t~l  110 (123)
T 3aaa_C           38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEG-----HVSCVKLLLSK-GADKTVKGPDGLTAF  110 (123)
T ss_dssp             TTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            3567899999999999999999988655544444 8999999999998     69999999998 667788899999999


Q ss_pred             HHHHHh
Q 044439           84 QVAAKF   89 (121)
Q Consensus        84 ~~a~~~   89 (121)
                      ++|...
T Consensus       111 ~~A~~~  116 (123)
T 3aaa_C          111 EATDNQ  116 (123)
T ss_dssp             HHCCCH
T ss_pred             HHhCCH
Confidence            999443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.59  E-value=6.4e-16  Score=103.02  Aligned_cols=91  Identities=15%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHh---hhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCCh----hhhcccCCC
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIES---LLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPS----LLLKVNAKG   79 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~---~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~~~   79 (121)
                      .||||.|+..|+.++++.|++.+....   .... .+.||||+|+..|     +.+++++|++.++.    .....+   
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~-~~~tpL~~Aa~~G-----~~eiv~~Ll~~gad~~~~~i~~~~---  163 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENG-----HLHVLNRLCELAPTEIMAMIQAEN---  163 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTT-----CHHHHHHHHHSCTTTHHHHHSHHH---
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc-CCCCHHHHHHHcC-----CHHHHHHHHhCCCCccccccCCCC---
Confidence            477888888888888888877643110   1112 3567888888777     58888888877431    222222   


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhCCCCC
Q 044439           80 DTPLQVAAKFGHSDIVSVLIKEAKSAQ  106 (121)
Q Consensus        80 ~tpL~~a~~~g~~~~~~~Ll~~ga~~~  106 (121)
                      .||||+|+..|+.+++++|+++|++++
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~  190 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEA  190 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            788888888888888888888887643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.58  E-value=4.3e-16  Score=103.82  Aligned_cols=89  Identities=11%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhh---HhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhc--ccCCCCc
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEI---ESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLK--VNAKGDT   81 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~~~t   81 (121)
                      .+|||.|+..|+.++++.|++.+..   ...... . .||||+|+..|     +.+++++|++. +.....  .+..|.|
T Consensus       129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G-----~~eiv~~Ll~~-ga~~~~~~~d~~g~T  200 (376)
T 2aja_A          129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENG-----HLHVLNRLCEL-APTEATAMIQAENYY  200 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTT-----CHHHHHHHHHS-CGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCC-----CHHHHHHHHHc-CCccchhccCCCCCC
Confidence            4699999999999999999988632   122222 2 89999999998     69999999998 545444  6778999


Q ss_pred             HHHHHH-HhCCHHHHHHHHHhCC
Q 044439           82 PLQVAA-KFGHSDIVSVLIKEAK  103 (121)
Q Consensus        82 pL~~a~-~~g~~~~~~~Ll~~ga  103 (121)
                      |||+|+ ..|+.+++++|++.|+
T Consensus       201 pL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          201 AFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCC
Confidence            999999 9999999999998764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.54  E-value=2.3e-14  Score=79.95  Aligned_cols=72  Identities=15%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             CCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           38 QTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        38 ~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ..|.|+||+|+..+     +.+++++|+.. +...+..+..|.||||+|+..|+.+++++|+++|++++..+..+.+.
T Consensus        22 ~~g~t~L~~A~~~g-----~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           22 SDLGKKLLEAARAG-----QDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             CCHHHHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CccchHHHHHHHcC-----CHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            37899999999998     59999999998 66777889999999999999999999999999999998877766554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.51  E-value=2.7e-14  Score=80.06  Aligned_cols=74  Identities=23%  Similarity=0.342  Sum_probs=65.3

Q ss_pred             cCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           37 AQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        37 ~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +..|.|+||+|+..+     +.+++++|++. +...+..+..|.||||+|+..|+.+++++|++.|++++..+..+.+..
T Consensus         6 d~~g~t~L~~A~~~~-----~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl   79 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNG-----HAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE   79 (115)
T ss_dssp             SCSSCCHHHHHHHHT-----CHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred             CCCCCCHHHHHHHcC-----CHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            348999999999998     59999999998 666778899999999999999999999999999999988777666554

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=83.64  E-value=0.96  Score=19.72  Aligned_cols=19  Identities=26%  Similarity=0.370  Sum_probs=15.9

Q ss_pred             HHHHHHHHcCChHHHHHHh
Q 044439            8 PNLFKAAAAGNAEPFKKDI   26 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll   26 (121)
                      ..+..|+..|+++.++.|-
T Consensus        15 QqiyvA~seGd~etv~~Le   33 (40)
T 1gp8_A           15 KQMDAAASKGDVETYRKLK   33 (40)
T ss_dssp             HHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHH
Confidence            4578899999999998773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 3e-06
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 8/113 (7%)

Query: 1   MNPVSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKF 60
               + H  L  A+  G     +  +      +        T LH+ +  +    VS   
Sbjct: 106 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 165

Query: 61  IEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPE 113
                         V  +G +P Q+      + I   L +   + ++    PE
Sbjct: 166 KCGADVNR------VTYQGYSPYQLTWGRPSTRIQQQLGQ--LTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.001
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 79  GDTPLQVAAKFGHSDIVSVLIKEAKSA 105
           GD+ L +A       +   +I++ K  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGD 28

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 8e-06
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLIK 100
             N KGDT   +A  +G +++VS++  
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 8e-06
 Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 6/42 (14%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG 115
                G TPL  A    +  +  +L        HG  EPE G
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLR------AHGAPEPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 5e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG 115
            V   GDT L +A    H   +  L+  +   ++ + + + G
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLG 45

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 41  NTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            T L +       +      ++ +LE     +   ++ G T L +A +     I  +L K
Sbjct: 220 KTPLILA-----VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 76  NAKGDTPLQVAAKFGHSDIVSVLIKEA 102
              G T L  AA+ GH +++ +L+ E 
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEM 171

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 4e-05
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            V+A   T  Q+A    H +IV +  +
Sbjct: 249 AVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 55  NVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
             +   ++ ++    S   K +  G TP+ +AA+ G  ++V  LI+
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 6e-05
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVLI 99
           + +A+G TPL++A + G  D+V +L 
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQ 153

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 7e-05
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 57 STKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVL 98
          + + I ++L     L   ++  G+T L +AA+F  +D    L
Sbjct: 1  TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 2e-04
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 75  VNAKGDTPLQVAAKFGHSDIVSVL 98
            +     P  VA++  H DIV +L
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLL 208

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 1e-04
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 79  GDTPLQVAAKFGHSDIVSVLIKEA 102
           G  P+ +A + GH D+   L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 1e-04
 Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 60  FIEEILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVL 98
             +E++E+       V+ +     T   ++   G+ D+  +L
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 79  GDTPLQVAAKFGHSDIVSVLIKEAKSA 105
           GDTPL +A   G+   V  L+   +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQG 29

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 5e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 6/37 (16%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIV 95
           L +  +L+      + K    DTPL VA      DI+
Sbjct: 190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 4e-04
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 65  LEICPSLLLK---VNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           L I  +LL +    N      +TPL +AA+ GH+++   L++
Sbjct: 13  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 54

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 8e-04
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 41  NTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIK 100
            T LH+       K V      + L    + +      G +PL  AA+ GH+DIV++L+K
Sbjct: 298 YTPLHVASHYGNIKLV------KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 74  KVNAKGDTPLQVAAKFGHSDIVSVL 98
           +V++ G TPL +A + G+  +  VL
Sbjct: 358 EVSSDGTTPLAIAKRLGYISVTDVL 382

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 41 NTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGH 91
          N  LH               ++E+L   PSLLL+ +  G  PL  +  F  
Sbjct: 1  NYPLHQAC-----MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (80), Expect = 5e-04
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 76  NAKGDTPLQVAAKFGHSDIVSVLIK 100
           N  G+TPL +A +  H     +L +
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQ 135

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 61  IEEILEICPSLLLKVNAK---GDTPLQVAAKFGHSDIVSVLIK 100
           I E L++   +   +NA+   GDT L +AA+ G+  IV  L+ 
Sbjct: 238 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 59  KFIEEILEICPSLLLKVNAK----GDTPLQVAAKFGHSDIVSVLIK 100
             ++E+ +  P+  L +N      G+TPL       + ++V  L+K
Sbjct: 83  SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 7/101 (6%)

Query: 4   VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEE 63
               P L           F+  I      SL+T   K  I      ++  + V       
Sbjct: 10  YENDPQLRLIPWILWENLFQHFIS-ANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 64  ILEICPSL------LLKVNAKGDTPLQVAAKFGHSDIVSVL 98
                 +         K   K +    VAA  G S  +  L
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTL 109

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 33.7 bits (76), Expect = 0.003
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 63  EILEICPSLLLK------VNAKGDTPLQVAAKFGHSDIVSVLIKE 101
             L+    LL        + A+     ++AA+ GH  +++ L + 
Sbjct: 104 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.0 bits (73), Expect = 0.003
 Identities = 6/22 (27%), Positives = 7/22 (31%)

Query: 79  GDTPLQVAAKFGHSDIVSVLIK 100
            D     A K G  D V   + 
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVA 23

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.79
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.78
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.74
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.73
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.72
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.71
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.71
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.69
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.69
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.69
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.67
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.66
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.65
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.65
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.65
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.64
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.63
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.63
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.63
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.63
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.62
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.6
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.57
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.54
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.5
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.96

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.9e-25  Score=124.51  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      ++||++|+..|+.++++.|++.+........ .|+||||+|+..+     +.+++++++.. +...+.++..|.||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~-~g~t~lh~A~~~~-----~~~~~~~ll~~-g~din~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCG-----QLEILEFLLLK-GADINAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS-SSCCTTHHHHHHS-----TTTHHHHHHHS-SCTTTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc-ccccccccccccc-----ccccccccccc-cceeeecccccccchhhh
Confidence            6899999999999999999998665545444 8999999999998     58899999998 677888899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      +..|+.+++++|+++|++++..+..|.++.+++
T Consensus        76 ~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            999999999999999999999988888877654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.1e-23  Score=116.89  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=85.4

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      +.|+.|+..|+.++++.|++.+......+. .|+||||+|+..+     +.++++++++. +.+.+..|..|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~-~g~t~Lh~A~~~~-----~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAG-----HTEIVKFLVQF-GVNVNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHH-TCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccccccccccccc-----ccccccccccc-ccccccccccCcccccccc
Confidence            468999999999999999998665555555 8999999999998     59999999998 6678888999999999999


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCCC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      ..|+.+++++|+++|++++..+.
T Consensus        76 ~~g~~~~v~~Ll~~ga~v~~~~~   98 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAVFAMTY   98 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             hhhHHHHHHHHHHcCCCcccccC
Confidence            99999999999999999986554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.4e-20  Score=115.43  Aligned_cols=95  Identities=17%  Similarity=0.079  Sum_probs=83.5

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..++.++++.|++.+..........|.||||+|+..+     +.+++++|++. +.+++.++..|.|||
T Consensus       156 ~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~-----~~~~v~~Ll~~-gadin~~d~~g~t~L  229 (255)
T d1oy3d_         156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-----AASVLELLLKA-GADPTARMYGGRTPL  229 (255)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             ccCcccccccccccccccccchhccccccccccccccccccccccccc-----HHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            446789999999999999999998755444444457999999999988     69999999998 677888999999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      |+|+..++.+++++|+++||+
T Consensus       230 ~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         230 GSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999995

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=9.4e-20  Score=106.52  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=81.1

Q ss_pred             CCCCHHHHHHHHc---CChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            4 VSIHPNLFKAAAA---GNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      ....||||+|+..   ++.++++.|++.+......+. .|.||||+|+..+     +.+++++|++. +...+.+|..|.
T Consensus        43 ~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~-~g~TpLh~A~~~~-----~~~~v~~Ll~~-gad~~~~d~~g~  115 (154)
T d1dcqa1          43 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALHYCCLTD-----NAECLKLLLRG-KASIEIANESGE  115 (154)
T ss_dssp             STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             CCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh-hhccccccccccc-----ccccccccccc-CccccccCCCCC
Confidence            3457899999974   678999999988665555444 8999999999998     69999999998 667788999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      ||||+|+..|+.+++++|++.++.
T Consensus       116 tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.5e-20  Score=112.41  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....||||.|+..|+.++++.|++.+........ .|.||||+++..+     ...+++.+... +...+..+..|.|||
T Consensus       101 ~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~-~~~t~L~~a~~~~-----~~~~~~~L~~~-~~~i~~~d~~g~TpL  173 (223)
T d1uoha_         101 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YEATAMHRAAAKG-----NLKMIHILLYY-KASTNIQDTEGNTPL  173 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT-----CHHHHHHHHHT-TCCSCCCCTTCCCHH
T ss_pred             CCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCccchhhhhcC-----Ccchhhhhccc-cceeeeccCCCCcee
Confidence            3466899999999999999999987654444444 7999999999988     58888888887 667788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|+..|+.+++++|++.|++++..+..+.++.+++
T Consensus       174 ~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         174 HLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             ccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999888877765543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.9e-19  Score=103.06  Aligned_cols=106  Identities=18%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             HHHHHHHcCChHHHHHHhhhhhhHhhh-----hcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            9 NLFKAAAAGNAEPFKKDIRRDEIESLL-----TAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         9 ~l~~a~~~g~~~~~~~ll~~~~~~~~~-----~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      .|+.|+..+++..+..++..+......     ....|.||||+|+..+.  .++.+++++|++. +.+++.++..|.|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~--~~~~~iv~~Ll~~-gadin~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD--RTSLHIVDFLVQN-SGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC--TTTHHHHHHHHHH-CSCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC--CCCHHHHHHHHHc-CCChhhhhhhhcccc
Confidence            477899999999999888764322111     12468999999998642  2368999999999 667788999999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      |+|+..|+.+++++|+++|++++..+..+.++..
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~  119 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLD  119 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHH
Confidence            9999999999999999999999998887776543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7e-20  Score=103.60  Aligned_cols=102  Identities=16%  Similarity=0.076  Sum_probs=84.8

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC-cHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD-TPLQV   85 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-tpL~~   85 (121)
                      .++||.|+..|++++++.|++.+......+. .|.|++|+|+ .+     +.+++++|++. +...+..+..+. ||||+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~-~g~t~l~~a~-~g-----~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MG-----SARVAELLLLH-GAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TT-----CHHHHHHHHTT-TCCCCCCCTTTCCCHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccc-cccccccccc-cc-----ccccccccccc-cccccccccccccccccc
Confidence            4679999999999999999998655555444 8999999765 45     59999999998 555666677665 79999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      |++.|+.+++++|+++|++++..+..+.++.
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l  106 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLDVRDAWGRLPV  106 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHH
T ss_pred             ccccccccccccccccccccccccCCCCCHH
Confidence            9999999999999999999998887776553

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.5e-19  Score=104.85  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCc----------------------------cccH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRK----------------------------NVST   58 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~----------------------------~~~~   58 (121)
                      .+|||.|++.|+.++++.|++.+....  .+..|.||||+|+..++..                            ..+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999865332  3448999999998876211                            1123


Q ss_pred             HHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           59 KFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        59 ~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      ++++.++.. +.....++..|.||||+|+..|+.+++++|+++|++++..+..+.++.
T Consensus        81 ~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl  137 (153)
T d1awcb_          81 NIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             HHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             eeeeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHH
Confidence            556666655 456667899999999999999999999999999999998877766554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.2e-18  Score=111.36  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=83.7

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCC-cccc-HHHH--------------------
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKR-KNVS-TKFI--------------------   61 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~-~~~~-~~~~--------------------   61 (121)
                      ....||||+||..|+.++|+.|++.+......+. .|.||||.|+..++. +.+. ..++                    
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc-ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            4577999999999999999999988765554444 799999999865410 0000 0111                    


Q ss_pred             ----------------------HHHHHhCCh------------------------------------hhhcccCCCCcHH
Q 044439           62 ----------------------EEILEICPS------------------------------------LLLKVNAKGDTPL   83 (121)
Q Consensus        62 ----------------------~~ll~~~~~------------------------------------~~~~~~~~~~tpL   83 (121)
                                            .+++.....                                    .++.+|..|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpL  263 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  263 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHH
Confidence                                  111121100                                    1356688999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|++.|+.+++++|+++||+++..+..|.++.+.+
T Consensus       264 h~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         264 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            999999999999999999999999999888876543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.4e-18  Score=101.36  Aligned_cols=47  Identities=17%  Similarity=0.199  Sum_probs=42.6

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCCCC
Q 044439           74 KVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKLPG  120 (121)
Q Consensus        74 ~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~  120 (121)
                      ..+..|.|||++|+..|+.+++++|+++|++++..+..|.+++.++-
T Consensus       172 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         172 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            56778999999999999999999999999999999999998887764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.4e-18  Score=111.61  Aligned_cols=94  Identities=20%  Similarity=0.298  Sum_probs=82.7

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      ||||.||..|+.++|+.|++.+......+. .|.||||+|+..+     +.+++++|+++ ++.++..+..|.|||++|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~-~g~TpL~~A~~~g-----~~~iv~~Ll~~-gadi~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAG-----HTEVAKYLLQN-KAKVNAKAKDDQTPLHCAA   74 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSS-CCCCHHHHHHHHT-----CHHHHHHHHHH-TCCSSCCCTTSCCHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcC-----CHHHHHHHHHC-cCCCCCCCCCCCCHHHHHH
Confidence            799999999999999999998655544444 8999999999998     69999999999 6678888999999999999


Q ss_pred             HhCCHHHHHHHHHhCCCCCCC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHG  108 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~  108 (121)
                      ..|+.+++++|+..++++...
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~   95 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLA   95 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCC
T ss_pred             HcCCHHHHHHHHHhhhccccc
Confidence            999999999999998765443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.1e-17  Score=102.50  Aligned_cols=110  Identities=18%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++++.++..++.++++.++..+......+. .|+|+||+++..+     +.++++.|++.+....+..+..|.|||
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~-----~~~~~~~Ll~~~~~~in~~d~~g~TpL  176 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVG-----SLKLIELLCGLGKSAVNWQDKQGWTPL  176 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHT-----CHHHHHHHHTTTCCCSCCCCTTSCCHH
T ss_pred             cccccccccccccchhhhhhhhhhhcccccccCC-CCCCccchhhhcc-----cccccccccccccccccccccccCCch
Confidence            3456789999999999999999887544444444 7999999999988     599999999986677788899999999


Q ss_pred             HHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCcCCCCC
Q 044439           84 QVAAKFGHSDIVSVLIK-EAKSAQHGNEEPERGLKLP  119 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~  119 (121)
                      |+|+..|+.+++++|++ .|++++..+..|.++.+++
T Consensus       177 h~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             hhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            99999999999999996 5999999988888776654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-17  Score=101.65  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      .+.||||+|+..|+.++++.++........... .+.++++.++..+     +.+++++|+.. +...+..+..|.||||
T Consensus        36 ~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~i~~~Ll~~-~~d~~~~d~~g~tpL~  108 (223)
T d1uoha_          36 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAG-----RDEIVKALLGK-GAQVNAVNQNGCTPLH  108 (223)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT-TCCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHH
T ss_pred             CCCCHHHHHHHhhhhcccccccccccccccccc-ccccccccccccc-----ccchhHHHhcc-CceeEeeCCCCCchhh
Confidence            345666666666666666665554222222222 3445555555544     46777777776 4556677888888888


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCc
Q 044439           85 VAAKFGHSDIVSVLIKEAKSAQHGNEEPER  114 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~  114 (121)
                      +|+..|+.+++++|+++|++++..+..+..
T Consensus       109 ~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t  138 (223)
T d1uoha_         109 YAASKNRHEIAVMLLEGGANPDAKDHYEAT  138 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCc
Confidence            888888888888888888877766554443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.7e-17  Score=103.02  Aligned_cols=96  Identities=16%  Similarity=0.120  Sum_probs=81.9

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhh--hcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCc
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLL--TAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDT   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~--~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t   81 (121)
                      ..+.||||+|+..|+.++++.|++.+......  .+..|.||||+|+..+     +.++++.|+.. ++.++..+..|.|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g-----~~~iv~~Ll~~-ga~i~~~d~~g~t   80 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-----EASTVEKLYAA-GAGVLVAERGGHT   80 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT-----CHHHHHHHHHT-TCCSSCCCTTSCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhc-----ccccccccccc-cccccccccccch
Confidence            46789999999999999999999875443322  2247899999999998     69999999998 6777888999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCC
Q 044439           82 PLQVAAKFGHSDIVSVLIKEAKSA  105 (121)
Q Consensus        82 pL~~a~~~g~~~~~~~Ll~~ga~~  105 (121)
                      ||++|+..++.+++++|++.+...
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~  104 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSH  104 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSS
T ss_pred             hhhhhhccCchHHHHHHHhhccch
Confidence            999999999999999999887643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.9e-18  Score=105.84  Aligned_cols=101  Identities=21%  Similarity=0.274  Sum_probs=83.6

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhh----------------------------hHhh---------hhcCCCCCHHHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDE----------------------------IESL---------LTAQTKNTILHI   46 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~----------------------------~~~~---------~~~~~g~t~lh~   46 (121)
                      ....++||+|+..|+.++++.|+++..                            ....         ..+..|.||||+
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccch
Confidence            346789999999999999999985310                            0000         012368999999


Q ss_pred             HHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q 044439           47 NITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGN  109 (121)
Q Consensus        47 a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~  109 (121)
                      |+..+     +.+++++|+...+.+++..|..|.||||+|+..|+.+++++|+++||++|+++
T Consensus       226 a~~~~-----~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         226 AVEKK-----HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHTT-----CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             hhhcC-----cHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            99988     69999999987678888899999999999999999999999999999998764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=109.53  Aligned_cols=104  Identities=23%  Similarity=0.241  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++++.|+..++.++++.|++.+........ .+.||||.++..+     ..++++.+++. +.+.+.++..|.||||+
T Consensus       264 g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~-~~~t~L~~~~~~~-----~~~~~~~ll~~-g~~in~~d~~G~T~Lh~  336 (408)
T d1n11a_         264 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYG-----NIKLVKFLLQH-QADVNAKTKLGYSPLHQ  336 (408)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSS-----CSHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             CCChhhhhhhcCcHHHHHHHHHCCCccccccc-cccccchhhcccC-----cceeeeeeccc-cccccccCCCCCCHHHH
Confidence            44677777777777777777766443333333 5677777777766     46677777776 55666777788888888


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           86 AAKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      |++.|+.+++++|+++||+++..+..|.++.
T Consensus       337 A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L  367 (408)
T d1n11a_         337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPL  367 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCSSSCCHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            8888888888888888888777776666543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.8e-18  Score=96.32  Aligned_cols=90  Identities=14%  Similarity=0.065  Sum_probs=75.1

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.| ..|+.++++.|++.+......+...+.+|||+|+..+     +.++++.|++. +.+.+..|..|.|||
T Consensus        34 ~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g-----~~~~v~~Ll~~-ga~~~~~d~~G~T~l  106 (125)
T d1bi7b_          34 SYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG-----FLDTLVVLHRA-GARLDVRDAWGRLPV  106 (125)
T ss_dssp             SSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT-----CHHHHHHHHHH-TCCSSCCCTTCCCHH
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccc-----ccccccccccc-ccccccccCCCCCHH
Confidence            3456788865 5799999999999865554444434557999999998     59999999999 677888899999999


Q ss_pred             HHHHHhCCHHHHHHHHH
Q 044439           84 QVAAKFGHSDIVSVLIK  100 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~  100 (121)
                      |+|+..|+.+++++|+.
T Consensus       107 ~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         107 DLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHTCHHHHHHHSS
T ss_pred             HHHHHcCCHHHHHHHHh
Confidence            99999999999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.69  E-value=6.3e-19  Score=110.54  Aligned_cols=68  Identities=18%  Similarity=0.240  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHH--------HHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCC
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEI--------LEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNE  110 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~l--------l~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~  110 (121)
                      .|+||||+|+..++     .++++.|        +.. +.+++.+|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        32 ~g~T~Lh~A~~~g~-----~~~v~~Ll~~~~~~~l~~-Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~  105 (277)
T d2fo1e1          32 HNRTVLHWIASNSS-----AEKSEDLIVHEAKECIAA-GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK  105 (277)
T ss_dssp             SCCCHHHHHHCTTC-----CSCCTTHHHHHHHHHHHT-CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCccHHHHHHHcCC-----HHHHHHHHhcchhHHHHc-CCCccccCCCCCeeeccccccccccccccccccccccccccc
Confidence            46666666666652     4444333        232 344555666666666666666666666666666666665544


Q ss_pred             CC
Q 044439          111 EP  112 (121)
Q Consensus       111 ~~  112 (121)
                      .+
T Consensus       106 ~g  107 (277)
T d2fo1e1         106 SE  107 (277)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-16  Score=96.74  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=61.1

Q ss_pred             CCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 044439           39 TKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLKL  118 (121)
Q Consensus        39 ~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  118 (121)
                      .|.|++|.++..+     ..+++.+++..+.......+..|.||||+|++.|+.+++++|+++|++++..+..+.++..+
T Consensus       110 ~~~t~l~~a~~~~-----~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         110 NGHTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             TCCCHHHHHHHTT-----CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             ccchhhhHHhhcC-----ChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHH
Confidence            3566777766665     57788888877555555556789999999999999999999999999999999888887765


Q ss_pred             C
Q 044439          119 P  119 (121)
Q Consensus       119 ~  119 (121)
                      +
T Consensus       185 A  185 (221)
T d1iknd_         185 T  185 (221)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=9.9e-17  Score=96.87  Aligned_cols=87  Identities=22%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++|+.++..+..++++.++.........+. .|.||||+|+..+     +.++++.|++. +.+.+..|..|.||||
T Consensus       122 ~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~-~g~TpL~~A~~~g-----~~~~v~~Ll~~-gad~n~~d~~g~Tpl~  194 (209)
T d1ot8a_         122 SGKTALHWAAAVNNTEAVNILLMHHANRDAQDD-KDETPLFLAAREG-----SYEASKALLDN-FANREITDHMDRLPRD  194 (209)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CCCCcchhhcccCcceeeeeecccccccccccc-ccccccchhcccc-----HHHHHHHHHHC-CCCCCCcCCCCCCHHH
Confidence            345678888888888888777776544444444 6788888888777     58888888877 5556677888888888


Q ss_pred             HHHHhCCHHHHHHH
Q 044439           85 VAAKFGHSDIVSVL   98 (121)
Q Consensus        85 ~a~~~g~~~~~~~L   98 (121)
                      +|++.|+.+++++|
T Consensus       195 ~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         195 VASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHhhc
Confidence            88888888888765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.7e-16  Score=91.18  Aligned_cols=97  Identities=16%  Similarity=0.119  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      ++||.||..|+.++|+.|++.+......+. .|.||||+|+ .+     +.++++.|++. +...+..+..+.++++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~-~g~TpL~~A~-~~-----~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMK-LG-----NPEIARRLLLR-GANPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT-TSCCHHHHCC-SS-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCC-cccccccccc-cc-----ccccccccccc-ccccccccccCcccccccc
Confidence            689999999999999999998665555555 8999999875 45     48888888887 4555566666777777777


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCCCCC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHGNEEP  112 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~~~~~  112 (121)
                      ..++.+++..|++.+.+++..+..+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~~~   99 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQADVNIEDNEG   99 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccccccccccccccccccccccc
Confidence            7777777777777666655544443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.66  E-value=7.9e-18  Score=109.46  Aligned_cols=90  Identities=19%  Similarity=0.273  Sum_probs=44.0

Q ss_pred             CHHHHHHHHcCChHHHHH---HhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc--CCCCc
Q 044439            7 HPNLFKAAAAGNAEPFKK---DIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN--AKGDT   81 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~---ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--~~~~t   81 (121)
                      .++||.||..|+.+.++.   |++.+......+. .|+||||+|+..|     +.++|++|++.++ ..+..+  ..|.|
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~-~g~taL~~Aa~~G-----~~~~v~~Ll~~g~-~~~~~~~~~~g~t  163 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENG-----HLHVLNRLCELAP-TEIMAMIQAENYH  163 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTT-----CHHHHHHHHHSCT-TTHHHHHSHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC-CCCCHHHHHHHCC-----CHHHHHHHHHcCC-CccccccccCCCC
Confidence            355556666666554443   2333332223333 4556666666555     3566666665522 222222  23556


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCC
Q 044439           82 PLQVAAKFGHSDIVSVLIKEAK  103 (121)
Q Consensus        82 pL~~a~~~g~~~~~~~Ll~~ga  103 (121)
                      |||+|+..|+.+++++|++.|+
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~  185 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAP  185 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCG
T ss_pred             hhHHHHHHhhHHHHHHHHHcCC
Confidence            6666666666666666665554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.7e-16  Score=90.87  Aligned_cols=56  Identities=16%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           58 TKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        58 ~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      .++++.+++. +...+..+..|.||||+|+..|+.+++++|+ .|++++..+..+.++
T Consensus        81 ~~~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~Tp  136 (156)
T d1bd8a_          81 LDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTP  136 (156)
T ss_dssp             HHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCH
T ss_pred             cccccccccc-ccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCH
Confidence            4555555555 3344455666677777777777777776655 566666555554443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=6e-17  Score=99.08  Aligned_cols=93  Identities=13%  Similarity=0.038  Sum_probs=77.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....++||.|+..|+.++++.|++.+.......+..|.||||+|+..+     +.+++++|++..+++++.+|..|.|||
T Consensus       136 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~-----~~~~v~~Ll~~~gad~~~~d~~g~t~l  210 (229)
T d1ixva_         136 KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG-----HGDAAVLLVEKYGAEYDLVDNKGAKAE  210 (229)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTT-----CHHHHHHHHHHHCCCSCCCCTTSCCTG
T ss_pred             CCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccc-----cHHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            345689999999999999999998753332233348999999999988     599999999754777888999999999


Q ss_pred             HHHHHhCCHHHHHHHHHhCCC
Q 044439           84 QVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        84 ~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      ++|+   +.+++++|++.|++
T Consensus       211 ~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         211 DVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             GGCS---CHHHHHHHHHHCCC
T ss_pred             HHHh---hHHHHHHHHHcCCC
Confidence            9997   45899999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=8.6e-16  Score=96.85  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=85.6

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      .++|+.||..|+++.|+.|++.+......+. .|.||||+|+..+     +.+++++|++. +......+..+.+||+.+
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~-~G~T~L~~A~~~g-----~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDD-----NVDMVKFLVEN-GANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT-TCCBHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCcHHHHHHhcC-----Cceeeeeeccc-cccccccccccccccccc
Confidence            4789999999999999999998655554444 8999999999998     69999999998 555667788999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPE  113 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~  113 (121)
                      +..++.++++.|++.|+..+..+..+.
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~  140 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGD  140 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccccchhhcccccCcccccccccCc
Confidence            999999999999999988776655443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=90.67  Aligned_cols=93  Identities=14%  Similarity=0.065  Sum_probs=75.4

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhccc-CCCCcH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVN-AKGDTP   82 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~tp   82 (121)
                      ....||||+|+..|+.++++.+++.+......+. .|+||||+|+..+     +.+++++|++. ++.++..+ ..+.||
T Consensus        32 ~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~-~g~tpLh~A~~~g-----~~~~v~~Ll~~-ga~v~~~~~~~~~~~  104 (130)
T d1ycsb1          32 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCN-----NVQVCKFLVES-GAAVFAMTYSDMQTA  104 (130)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCSSSCCCH
T ss_pred             cccccccccccccccccccccccccccccccccc-cCcccccccchhh-----HHHHHHHHHHc-CCCcccccCCCCCCH
Confidence            4567999999999999999999988655444444 8999999999998     69999999998 55555444 468898


Q ss_pred             HHHH--HHhCCHHHHHHHHHhCC
Q 044439           83 LQVA--AKFGHSDIVSVLIKEAK  103 (121)
Q Consensus        83 L~~a--~~~g~~~~~~~Ll~~ga  103 (121)
                      ++++  ...|+.+++++|+..+.
T Consensus       105 ~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1         105 ADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcChHHHHHHHHhHHH
Confidence            8775  57799999999997643

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.64  E-value=4.6e-16  Score=97.28  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...++||.++..++.+.++.++..........+..|.||||+|+..+     +.+++++|++. +++++.+|..|.||||
T Consensus       186 ~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g-----~~~iv~~Ll~~-gadin~~d~~G~T~L~  259 (277)
T d2fo1e1         186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG-----RIEVVMYLIQQ-GASVEAVDATDHTARQ  259 (277)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT-----CHHHHHHHHHT-TCCSSCCCSSSCCHHH
T ss_pred             CCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcC-----CHHHHHHHHHC-cCCCCCcCCCCCCHHH
Confidence            45678999999999999998776633333333458999999999998     69999999998 6678889999999999


Q ss_pred             HHHHhCCHHHHHHHHHh
Q 044439           85 VAAKFGHSDIVSVLIKE  101 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~  101 (121)
                      +|+..|+.+++++|+++
T Consensus       260 ~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         260 LAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHTTCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHh
Confidence            99999999999999864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.3e-15  Score=88.53  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHH
Q 044439            8 PNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAA   87 (121)
Q Consensus         8 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~   87 (121)
                      ..|+.||..|+.+.|+.|+..........+..|+||||+|+. +     +.+++++|+.. ....+..+..+.+|++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~-----~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-G-----STAIALELLKQ-GASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-T-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-c-----ccccccccccc-ccccccccccccccccccc
Confidence            359999999999999999987432223333489999999875 4     48999999988 5567778889999999999


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCCCCCCcC
Q 044439           88 KFGHSDIVSVLIKEAKSAQHGNEEPERG  115 (121)
Q Consensus        88 ~~g~~~~~~~Ll~~ga~~~~~~~~~~~~  115 (121)
                      ..++.+++++++++|++++..+..+...
T Consensus        77 ~~~~~~~~~~~l~~~~~~n~~~~~~~t~  104 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVNVPDGTGALP  104 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             ccccccccccccccccccccccCCCCee
Confidence            9999999999999999988877665544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.4e-15  Score=87.79  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=60.2

Q ss_pred             HHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHh
Q 044439           10 LFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKF   89 (121)
Q Consensus        10 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~   89 (121)
                      ++.++...+.+.++.++..+...... +..|+||||+|+..+     +.+++++|++. +.+++..|..|.|||++|+..
T Consensus        71 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~T~L~~A~~~g-----~~~iv~~ll~~-gad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          71 LHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHN-----HQEVVELLIKY-GADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccccccceeeecccccCCccccc-cccCchHHHhhhhcc-----hhheeeecccc-ccCCcccCCCCCCHHHHHHHc
Confidence            33444444444444433332222222 247999999999998     69999999998 677888899999999999999


Q ss_pred             CCHHHHHHH
Q 044439           90 GHSDIVSVL   98 (121)
Q Consensus        90 g~~~~~~~L   98 (121)
                      |+.+++++|
T Consensus       144 g~~eiv~lL  152 (153)
T d1awcb_         144 GNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHhC
Confidence            999999976

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=5.2e-16  Score=97.90  Aligned_cols=76  Identities=17%  Similarity=0.277  Sum_probs=68.8

Q ss_pred             CCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 044439           38 QTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKEAKSAQHGNEEPERGLK  117 (121)
Q Consensus        38 ~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~~  117 (121)
                      ..|.|+||+++..+     +.++++.|+.. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.++.+
T Consensus       197 ~~g~t~L~~a~~~~-----~~~~~~~Ll~~-g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~  270 (291)
T d1s70b_         197 KSGGTALHVAAAKG-----YTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD  270 (291)
T ss_dssp             TTCCCHHHHHHHHT-----CHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             CCCCChhhHHHHcC-----Chhhhcccccc-eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            46889999999998     69999999988 6677888999999999999999999999999999999999888888877


Q ss_pred             CC
Q 044439          118 LP  119 (121)
Q Consensus       118 ~~  119 (121)
                      ++
T Consensus       271 ~A  272 (291)
T d1s70b_         271 VA  272 (291)
T ss_dssp             SC
T ss_pred             HH
Confidence            65

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.2e-15  Score=87.25  Aligned_cols=90  Identities=23%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHH
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQ   84 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~   84 (121)
                      ...||||.|+ .|+.++++.|++.+........ .+.++++.++..+     ....+..++.. ....+..+..+.+|++
T Consensus        33 ~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~-~~~~~l~~~~~~~-----~~~~~~~l~~~-~~~~~~~~~~~~~~l~  104 (156)
T d1ihba_          33 FGRTALQVMK-LGNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAG-----FLDTLQTLLEF-QADVNIEDNEGNLPLH  104 (156)
T ss_dssp             TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHT-----CHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             cccccccccc-cccccccccccccccccccccc-cCccccccccccc-----ccccccccccc-cccccccccccccccc
Confidence            3456666554 5666776666655332222222 3444544444444     24444444443 2233333444444444


Q ss_pred             HHHHhCCHHHHHHHHHhC
Q 044439           85 VAAKFGHSDIVSVLIKEA  102 (121)
Q Consensus        85 ~a~~~g~~~~~~~Ll~~g  102 (121)
                      +|+..++.+++++|++++
T Consensus       105 ~a~~~~~~~~~~~Ll~~~  122 (156)
T d1ihba_         105 LAAKEGHLRVVEFLVKHT  122 (156)
T ss_dssp             HHHHTTCHHHHHHHHHHS
T ss_pred             cccccccccccccccccc
Confidence            444444444444444444

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.62  E-value=1.5e-17  Score=108.13  Aligned_cols=96  Identities=10%  Similarity=0.085  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhc-CCCCCHHHHHHhcCCCccccHHHHHHHHHhCChh--hhcccCCCCcH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTA-QTKNTILHINITSRKRKNVSTKFIEEILEICPSL--LLKVNAKGDTP   82 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~~~~~tp   82 (121)
                      ..||||+||..|+.++|+.|++.+........ ..|.||||+|+..|     +.+++++|++.++..  .+..+..+.||
T Consensus       126 g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g-----~~~iv~~Ll~~~~~~~~~~~~~~~~~t~  200 (346)
T d2ajaa1         126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG-----HLHVLNRLCELAPTEATAMIQAENYYAF  200 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTT-----CHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHh-----hHHHHHHHHHcCCcccccccccCCCcch
Confidence            45899999999999999999998654443322 25899999999999     699999999985432  23344566788


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCC
Q 044439           83 LQVAAKFGHSDIVSVLIKEAKSAQ  106 (121)
Q Consensus        83 L~~a~~~g~~~~~~~Ll~~ga~~~  106 (121)
                      ++.|+..|+.+++++|++.|++++
T Consensus       201 l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         201 RWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             hhHHhhcCHHHHHHHHHhCCCCcc
Confidence            888999999999999999987654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.7e-16  Score=93.52  Aligned_cols=93  Identities=15%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHH
Q 044439            6 IHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQV   85 (121)
Q Consensus         6 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~   85 (121)
                      ..++||.|+..++.+.+..++..+.......+..|.||||+|+..+     +.+++++|++. +.+++.++..|.|||++
T Consensus       111 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g-----~~~~v~~Ll~~-gad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         111 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ-----NPDLVSLLLKC-GADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-----CHHHHHHHHTT-TCCSCCCCTTCCCGGGG
T ss_pred             cchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc-----cHHHHHHHHhc-CCcccccCCCCCCHHHH
Confidence            4688999999999999998887755544444447999999999998     69999999998 66788899999999999


Q ss_pred             HHHhCCHHHHHHHHHhCCC
Q 044439           86 AAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        86 a~~~g~~~~~~~Ll~~ga~  104 (121)
                      |+..++.+++++|++.+.+
T Consensus       185 A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         185 TWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CTTSSCHHHHHHHHTTSCG
T ss_pred             HHHCCCHHHHHHHHHcCCc
Confidence            9999999999999998765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=2.5e-17  Score=92.03  Aligned_cols=77  Identities=14%  Similarity=0.009  Sum_probs=66.3

Q ss_pred             CCCCHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHH
Q 044439            4 VSIHPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPL   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL   83 (121)
                      ....+|||+|+..|+.++++.+++.+......+. .|+||||+|+..+     +.+++++|++. +++++..|..|.|||
T Consensus        33 ~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~-~g~tpLh~A~~~~-----~~~~v~~Ll~~-Gad~~~~d~~G~t~l  105 (118)
T d1myoa_          33 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEG-----HVSCVKLLLSK-GADKTVKGPDGLTAL  105 (118)
T ss_dssp             SSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS-SCSCHHHHHHTTT-----CCHHHHHHHTT-CCCSSSSSSSTCCCC
T ss_pred             ccccccccccccccccccccccccccceeeeccc-ccccchhhhhhcC-----chhhhhhhhcc-cccceeeCCCCCCHH
Confidence            4567899999999999999999988665555444 8999999999988     58999999998 667788899999999


Q ss_pred             HHHH
Q 044439           84 QVAA   87 (121)
Q Consensus        84 ~~a~   87 (121)
                      ++|.
T Consensus       106 ~~a~  109 (118)
T d1myoa_         106 EATD  109 (118)
T ss_dssp             CTCS
T ss_pred             HHHh
Confidence            9884

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=2.1e-14  Score=86.41  Aligned_cols=103  Identities=17%  Similarity=0.101  Sum_probs=81.9

Q ss_pred             CHHHHHHHHcCChHHHHHHhhhhhhHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHH
Q 044439            7 HPNLFKAAAAGNAEPFKKDIRRDEIESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVA   86 (121)
Q Consensus         7 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a   86 (121)
                      .+..+.+.........+.|...+......+. .|.|+|++++..+     ...++..++.. ....+..+..|.||||+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~~~~~~-----~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          91 TTPLILAARLAIEGMVEDLITADADINAADN-SGKTALHWAAAVN-----NTEAVNILLMH-HANRDAQDDKDETPLFLA  163 (209)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred             cccccccccccchhhhhhhhhhcccccccCC-CCCCcchhhcccC-----cceeeeeeccc-cccccccccccccccchh
Confidence            3456666777777777777665443333344 7899999999888     58899999988 566778899999999999


Q ss_pred             HHhCCHHHHHHHHHhCCCCCCCCCCCCcCC
Q 044439           87 AKFGHSDIVSVLIKEAKSAQHGNEEPERGL  116 (121)
Q Consensus        87 ~~~g~~~~~~~Ll~~ga~~~~~~~~~~~~~  116 (121)
                      +..|+.+++++|+++|++++..+..+.++.
T Consensus       164 ~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl  193 (209)
T d1ot8a_         164 AREGSYEASKALLDNFANREITDHMDRLPR  193 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccccHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            999999999999999999998887766543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3e-14  Score=85.63  Aligned_cols=93  Identities=13%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHHcCChHHHHHHhhhhh----hHhhhhcCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCC
Q 044439            5 SIHPNLFKAAAAGNAEPFKKDIRRDE----IESLLTAQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGD   80 (121)
Q Consensus         5 ~~~~~l~~a~~~g~~~~~~~ll~~~~----~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (121)
                      ++.||||.|+..|+.++++.|++...    .....+ ..|+||||+|+..+     +.++++.|++. +...+..+..+.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d-~~g~TpL~~A~~~~-----~~~iv~~Ll~~-ga~~~~~~~~~~   74 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITT-----LPSVVRLLVTA-GASPMALDRHGQ   74 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccC-CCCCccceehhccc-----ccccccccccc-cccccccccccc
Confidence            47899999999999999999997521    222233 48999999999998     69999999998 666777788999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCC
Q 044439           81 TPLQVAAKFGHSDIVSVLIKEAKS  104 (121)
Q Consensus        81 tpL~~a~~~g~~~~~~~Ll~~ga~  104 (121)
                      ++++.|...++.++++.+......
T Consensus        75 ~~~~~a~~~~~~~~~~~~~~~~~~   98 (228)
T d1k1aa_          75 TAAHLACEHRSPTCLRALLDSAAP   98 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred             cccccccccccccchhhhhhcccc
Confidence            999999999999999988877654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.3e-14  Score=88.04  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=43.0

Q ss_pred             HHHHHHHhCChhhhcccCCCCcHHHHHHHhCCHHHHHHHHHh-CCCCCCCCCCCCcCC
Q 044439           60 FIEEILEICPSLLLKVNAKGDTPLQVAAKFGHSDIVSVLIKE-AKSAQHGNEEPERGL  116 (121)
Q Consensus        60 ~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~~~~~~~Ll~~-ga~~~~~~~~~~~~~  116 (121)
                      ++++|++. +...+..+..|.||||+|+..|+.+++++|++. |++++..+..|.+++
T Consensus       201 i~~~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL  257 (285)
T d1wdya_         201 ITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL  257 (285)
T ss_dssp             HHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH
T ss_pred             HHHHHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            34444444 334455688999999999999999999999985 899988877776544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=7.5e-10  Score=70.03  Aligned_cols=49  Identities=20%  Similarity=0.154  Sum_probs=43.4

Q ss_pred             cCCCCCHHHHHHhcCCCccccHHHHHHHHHhCChhhhcccCCCCcHHHHHHHhCC
Q 044439           37 AQTKNTILHINITSRKRKNVSTKFIEEILEICPSLLLKVNAKGDTPLQVAAKFGH   91 (121)
Q Consensus        37 ~~~g~t~lh~a~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tpL~~a~~~g~   91 (121)
                      +..|+||||+|+..+     +.++|+.|++. +++.+.+|..|.||||.|+..++
T Consensus       104 D~~G~T~LH~Aa~~g-----~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIA-----NLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             STTCCCHHHHHHHTT-----CHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             CCCCCCHHHHHHHcC-----CHHHHHHHHHC-CCCCCcCCcccccHHHHhhhccc
Confidence            347999999999998     69999999998 67788899999999999998765