Citrus Sinensis ID: 044462

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
cccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHccccccccHHHHccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccc
HHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHHccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccc
wwkktglgeklnFARDRVVENFfwtvgdifepqfgycRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKwynsgyiptLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFlqdspdiiriSSMIVRLeddlgtssdelkrgdvpksiqCYMHETRVSEDEAREHIRDLIAETWMKMnsarfgnppylpdvFIGMAMNLVRMSQCMylygdghgvqentkDRVLSLFIDPIP
wwkktglgeklnfardRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDlgtssdelkrgdvpksiqcymhetrvsedeaREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
******LGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLED*****************IQCYMHE*********EHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFI****
WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q8L5K4600 Gamma-terpinene synthase, N/A no 1.0 0.498 0.989 1e-179
Q6PWU2590 (-)-alpha-terpineol synth no no 0.993 0.503 0.656 1e-115
Q93X23597 Myrcene synthase, chlorop N/A no 0.993 0.497 0.653 1e-114
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.986 0.498 0.583 5e-99
Q9LRZ6598 Beta-myrcene/(E)-beta-oci yes no 0.996 0.498 0.557 3e-98
P0DI77600 1,8-cineole synthase 2, c no no 0.996 0.496 0.552 2e-95
P0DI76600 1,8-cineole synthase 1, c no no 0.996 0.496 0.552 2e-95
Q8L5K3606 (R)-limonene synthase 1 O N/A no 0.996 0.491 0.548 2e-94
A7IZZ1622 (-)-limonene synthase, ch N/A no 0.993 0.477 0.562 2e-92
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.989 0.487 0.539 8e-91
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function desciption
 Score =  628 bits (1620), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 296/299 (98%), Positives = 297/299 (99%)

Query: 1   WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
           WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT
Sbjct: 302 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 361

Query: 61  LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
           LDELELFTDAVERWDAT TEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA
Sbjct: 362 LDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 421

Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
           WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ
Sbjct: 422 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 481

Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
           DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET VSEDEAREHIRDLIAET
Sbjct: 482 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETGVSEDEAREHIRDLIAET 541

Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP 299
           WMKMNSARFGNPPYLPDVFIG+AMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
Sbjct: 542 WMKMNSARFGNPPYLPDVFIGIAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP 600
Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 4
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|Q9LRZ6|MYRS2_ARATH Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=1 SV=1 Back     alignment and function description
>sp|P0DI77|CIN2_ARATH 1,8-cineole synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS23 PE=1 SV=1 Back     alignment and function description
>sp|P0DI76|CIN1_ARATH 1,8-cineole synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
75245637 600 RecName: Full=Gamma-terpinene synthase, 1.0 0.498 0.989 1e-178
49659439 600 gamma-terpinene synthase [Citrus unshiu] 1.0 0.498 0.989 1e-177
49659441 600 gamma-terpinene synthase [Citrus unshiu] 1.0 0.498 0.989 1e-177
61161981 602 monoterpene synthase [Citrus unshiu] 0.996 0.495 0.796 1e-143
152962686 602 beta-pinene synthase [Citrus jambhiri] 0.996 0.495 0.773 1e-138
21435705 602 (-)-beta-pinene synthase [Citrus limon] 0.996 0.495 0.773 1e-137
322424199 602 pinene synthase [Citrus hystrix] 0.996 0.495 0.766 1e-135
49659443 602 beta-pinene synthase [Citrus unshiu] 0.996 0.495 0.763 1e-135
224126695 548 predicted protein [Populus trichocarpa] 0.989 0.540 0.698 1e-121
61161985 617 (E)-beta-ocimene synthase [Citrus unshiu 0.989 0.479 0.682 1e-120
>gi|75245637|sp|Q8L5K4.1|GTPS_CITLI RecName: Full=Gamma-terpinene synthase, chloroplastic; Short=ClgammaTS; Flags: Precursor gi|21435701|gb|AAM53943.1|AF514286_1 gamma-terpinene synthase [Citrus limon] Back     alignment and taxonomy information
 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/299 (98%), Positives = 297/299 (99%)

Query: 1   WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
           WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT
Sbjct: 302 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 361

Query: 61  LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
           LDELELFTDAVERWDAT TEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA
Sbjct: 362 LDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 421

Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
           WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ
Sbjct: 422 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 481

Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
           DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET VSEDEAREHIRDLIAET
Sbjct: 482 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETGVSEDEAREHIRDLIAET 541

Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP 299
           WMKMNSARFGNPPYLPDVFIG+AMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
Sbjct: 542 WMKMNSARFGNPPYLPDVFIGIAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP 600

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|49659439|dbj|BAD27258.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659441|dbj|BAD27259.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|61161981|dbj|BAD91045.1| monoterpene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|152962686|dbj|BAF73933.1| beta-pinene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|21435705|gb|AAM53945.1|AF514288_1 (-)-beta-pinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|322424199|gb|ADX01381.1| pinene synthase [Citrus hystrix] Back     alignment and taxonomy information
>gi|49659443|dbj|BAD27260.1| beta-pinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|224126695|ref|XP_002329450.1| predicted protein [Populus trichocarpa] gi|222870130|gb|EEF07261.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|61161985|dbj|BAD91046.1| (E)-beta-ocimene synthase [Citrus unshiu] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 1.0 0.498 0.989 5e-163
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.986 0.498 0.583 1.5e-92
TAIR|locus:2086004598 AT3G25810 [Arabidopsis thalian 0.996 0.498 0.557 5e-92
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.996 0.496 0.552 1.2e-88
TAIR|locus:2086014600 TPS-CIN ""terpene synthase-lik 0.996 0.496 0.552 1.2e-88
TAIR|locus:2047510591 TPS10 "terpene synthase 10" [A 0.996 0.504 0.521 1.3e-84
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.979 0.485 0.527 3.1e-83
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.986 0.544 0.501 8.7e-79
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.993 0.543 0.508 3.9e-76
UNIPROTKB|Q672F7595 EBOS "Tricyclene synthase EBOS 0.989 0.497 0.498 3.9e-76
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
 Identities = 296/299 (98%), Positives = 297/299 (99%)

Query:     1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
             WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT
Sbjct:   302 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 361

Query:    61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
             LDELELFTDAVERWDAT TEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA
Sbjct:   362 LDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 421

Query:   121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
             WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ
Sbjct:   422 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 481

Query:   181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
             DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET VSEDEAREHIRDLIAET
Sbjct:   482 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETGVSEDEAREHIRDLIAET 541

Query:   241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP 299
             WMKMNSARFGNPPYLPDVFIG+AMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP
Sbjct:   542 WMKMNSARFGNPPYLPDVFIGIAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP 600
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L5K4GTPS_CITLI4, ., 2, ., 3, ., 1, 1, 40.98991.00.4983N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_117000002
hypothetical protein (548 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-141
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-105
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 3e-99
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-34
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-22
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 3e-08
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  407 bits (1048), Expect = e-141
 Identities = 141/298 (47%), Positives = 188/298 (63%), Gaps = 2/298 (0%)

Query: 1   WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
           WWK   L  KL FARDR+VE +FW  G  FEPQ+   R   A    L+T IDD YDVYGT
Sbjct: 246 WWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGT 305

Query: 61  LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
           L+ELELFT+AVERWD +A +QLP YMK+ F AL N+VNE+    L++     ++PYLK+A
Sbjct: 306 LEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEA 364

Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
           W D  K+YLVEAKW + GY+PT +EYMENA +S+    +LL ++    + +T+EA E+L+
Sbjct: 365 WKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLE 424

Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
             P ++R SS I RL +D+ T  DE+KRGDV  SI+CYM E  VSE+EARE I+ +I + 
Sbjct: 425 SRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDA 484

Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQE-NTKDRVLSLFIDP 297
           W ++N         +P       +NL R+    Y  GDG    E   KD + SL  +P
Sbjct: 485 WKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.89
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 98.35
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 98.29
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 94.06
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 94.01
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 89.89
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 89.43
PLN02857416 octaprenyl-diphosphate synthase 88.95
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 87.28
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 86.71
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 85.99
PLN02890422 geranyl diphosphate synthase 84.98
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 83.55
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 83.48
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-78  Score=599.96  Aligned_cols=293  Identities=26%  Similarity=0.415  Sum_probs=283.4

Q ss_pred             CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCcc-cc
Q 044462            1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDAT-AT   79 (299)
Q Consensus         1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~-~~   79 (299)
                      ||+++|| .++||+|+|+++||||++|++|||++|.+|++|||.+++++++||+||.|||.||++.|++||+|||.+ ..
T Consensus       480 Wwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~  558 (784)
T PLN02279        480 WIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSP  558 (784)
T ss_pred             eHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccch
Confidence            9999999 799999999999999999999999999999999999999999999999999999999999999999988 56


Q ss_pred             ccCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHH
Q 044462           80 EQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVM  159 (299)
Q Consensus        80 ~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~  159 (299)
                      +.+|+|||++|.+++++++|++.++.+.||++ +.+|++++|++++++|++||+|+.+|++||+||||+++.+|+|..++
T Consensus       559 ~~lpeymki~f~aL~~t~nei~~~~~~~qGr~-v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i  637 (784)
T PLN02279        559 DFCSEQVEIIFSALRSTISEIGDKAFTWQGRN-VTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPI  637 (784)
T ss_pred             hhCcHHHHHHHHHHHHHHHHHHHHHHHHcCch-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHH
Confidence            89999999999999999999999988889999 99999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcC--CCCHHHHHHHHHHHH
Q 044462          160 LLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET--RVSEDEAREHIRDLI  237 (299)
Q Consensus       160 ~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~--g~s~eeA~~~i~~~i  237 (299)
                      +..+.+++|..+|+++++|. .+|+++++++.++||+|||+||++|+++|++ |+|.|||+|+  |+|+|||+++++++|
T Consensus       638 ~l~~~~~~G~~l~eev~e~~-~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~I  715 (784)
T PLN02279        638 VLPALYLVGPKLSEEVVDSP-ELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLI  715 (784)
T ss_pred             HHHHHHHhCCCCCHHHHhCc-chhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHH
Confidence            88888889999999999995 8999999999999999999999999999998 9999999987  899999999999999


Q ss_pred             HHHHHHHhhhhhCC--CCCCcHHHHHHHHHHhhhhhhhcccCCCCCCchhHHHHHHhcccccCC
Q 044462          238 AETWMKMNSARFGN--PPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPIP  299 (299)
Q Consensus       238 ~~~~k~l~~~~l~~--~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~~~~~~~i~~~~~~p~~  299 (299)
                      +++||+||++++++  +. +|++|+++|+|++|+++++|+++||||.+ .||++|++||++||+
T Consensus       716 e~~wKeLn~~~l~~~~~~-vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~  777 (784)
T PLN02279        716 ESQRRELLRLVLQEKGSN-VPRECKDLFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVS  777 (784)
T ss_pred             HHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCc
Confidence            99999999999974  46 99999999999999999999999999976 799999999999986

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 2e-80
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-79
2j5c_A569 Rational Conversion Of Substrate And Product Specif 1e-77
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 7e-73
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 6e-49
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-48
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 6e-45
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-39
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-39
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-39
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-39
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 6e-39
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 7e-39
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 2e-38
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-37
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 6e-37
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 7e-35
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/283 (49%), Positives = 190/283 (67%), Gaps = 1/283 (0%)
Query: 1   WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
           WW+ TG  EKL FARDR+VE +FW  G I   Q    R M   VN L+T IDD+YDVYGT
Sbjct: 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304
Query: 61  LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
           L+ELE FTD + RWD  + +QLP YM+LCF AL N V++  +  ++++ V  +IPYL+++
Sbjct: 305 LEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVN-VIPYLRQS 363
Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
           W D    Y+VEA+W+  G+ P+L+EY+EN+W S++ P ML H +    +  TKE ++ L 
Sbjct: 364 WVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLY 423
Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
              D++R SS ++RL DDLGTS +E+ RGDVPKS+QCYM +   SE EAR+H++ LIAE 
Sbjct: 424 KYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEV 483
Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ 283
           W KMN+ R          FIG A++L RM+Q MY  GDGHG Q
Sbjct: 484 WKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQ 526
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-102
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-101
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-100
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-100
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-97
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 3e-97
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 3e-96
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 7e-95
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-91
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-46
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-31
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 7e-31
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 6e-13
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 8e-08
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 8e-07
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  309 bits (793), Expect = e-102
 Identities = 97/300 (32%), Positives = 150/300 (50%), Gaps = 3/300 (1%)

Query: 1   WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
           WWK      KL +ARDRVVE +FW  G  FEPQ+   R+M   V  + + +DD YD Y T
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315

Query: 61  LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
            +EL  +T+A+ERWD    +++P YMK  + AL +   EM  +          + Y K A
Sbjct: 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQ-YRVEYAKNA 374

Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
                +SYLVEAKW    Y P+ +E+  NA  +    ++ + ++    + +T E  ++  
Sbjct: 375 MIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAA 434

Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
             P II+ S++I R  DD+     + +R D   +I+CYM E  V+  EA +     +   
Sbjct: 435 SDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESA 494

Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQEN-TKDRVLSLFIDPIP 299
           W  +N      P  +P   +  ++NL R+   +Y  GDG+       K  + SL I+PI 
Sbjct: 495 WKDLNQEFL-KPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIA 553
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.84
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 93.3
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 92.34
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 89.93
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 89.91
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 89.04
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 88.46
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 87.95
3lsn_A304 Geranyltranstransferase; structural genomics, prot 87.0
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 86.49
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 85.92
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 84.38
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 84.21
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 83.77
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 83.26
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 82.04
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 81.69
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 80.62
4f62_A317 Geranyltranstransferase; enzyme function initiativ 80.51
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 80.13
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 80.01
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-87  Score=646.83  Aligned_cols=297  Identities=32%  Similarity=0.599  Sum_probs=279.9

Q ss_pred             CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462            1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE   80 (299)
Q Consensus         1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~   80 (299)
                      ||+++||..+|||+|||++|||||++|++|||++|.+|+++||.++|++++||+||.|||+||++.||+||+|||.++++
T Consensus       256 Wwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~  335 (554)
T 3g4d_A          256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCID  335 (554)
T ss_dssp             HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGG
T ss_pred             HHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccc
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462           81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML  160 (299)
Q Consensus        81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~  160 (299)
                      +||+|||+||.+++++++|++.++.+.+|.+ ++.|++++|+++++||++||+|+.+||+||+||||++|.+|+|+++++
T Consensus       336 ~LPeymK~~f~al~~~~~e~~~~~~~~~~~~-~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~  414 (554)
T 3g4d_A          336 EIPEYMKPSYKALLDVYEEMVQLVAEHGRQY-RVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLA  414 (554)
T ss_dssp             GSCGGGHHHHHHHHHHHHHHHHHHGGGTCTH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHH
Confidence            9999999999999999999999988877777 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 044462          161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET  240 (299)
Q Consensus       161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~  240 (299)
                      +++++++|+.+|+++++|++++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++
T Consensus       415 ~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~  494 (554)
T 3g4d_A          415 ITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESA  494 (554)
T ss_dssp             HHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999987899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462          241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP  299 (299)
Q Consensus       241 ~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~  299 (299)
                      ||++|+++++++. +|++|+++++|++|+++++|+++||||.| +.+|++|++||++||+
T Consensus       495 wK~lN~e~l~~~~-~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~  553 (554)
T 3g4d_A          495 WKDLNQEFLKPTE-MPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIA  553 (554)
T ss_dssp             HHHHHHHHSSSCS-SCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCC
Confidence            9999999999878 99999999999999999999999999998 6899999999999986
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-118
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-113
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 6e-48
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 4e-35
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  341 bits (875), Expect = e-118
 Identities = 138/300 (46%), Positives = 191/300 (63%), Gaps = 4/300 (1%)

Query: 1   WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
           WW +    EKL F RDR+VE+FFW VG     Q GY R+M+A +  L T IDD+YDVYGT
Sbjct: 30  WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 89

Query: 61  LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
           LDELELFTD  +RWD  +  +LPYYM+LC+  ++N +++  +  L++      + YL+K+
Sbjct: 90  LDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKS 148

Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEA-LEFL 179
             D  ++Y  EAKWY+SGY P+L EY+  A ISV +P ++   Y   AN     A ++ L
Sbjct: 149 VVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSL 208

Query: 180 QDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAE 239
               DI+ ++ +I+RL DDLGTS  EL RGDVPK+IQCYM ET  SE+EA EH++ LI E
Sbjct: 209 YQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIRE 268

Query: 240 TWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQEN-TKDRVLSLFIDPI 298
            W  MN+A     P  PD  +  A N+ R++Q +YL+GDG GVQ + T + +  L  +P 
Sbjct: 269 AWKDMNTAIAAGYP-FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.97
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.62
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 83.0
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 82.86
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3.2e-88  Score=614.94  Aligned_cols=297  Identities=46%  Similarity=0.819  Sum_probs=277.4

Q ss_pred             CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462            1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE   80 (299)
Q Consensus         1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~   80 (299)
                      ||+++||.+++||+|||++|||||++|++|||++|.+|++|||.+++++++||+||.|||.||++.||++|+|||.++++
T Consensus        30 Wwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~iiDD~yD~ygt~eEl~~ft~ai~rWd~~~~~  109 (328)
T d1n1ba2          30 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESIT  109 (328)
T ss_dssp             HHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGG
T ss_pred             HHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhhhHHhcccCCHHHHHHHHHHHHhcCCcccc
Confidence            99999997789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462           81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML  160 (299)
Q Consensus        81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~  160 (299)
                      .+|+|||.+|.++++++++++.++.+.+|+. ++++++++|++++++|++||+|+++||+||+|||++++.+|+|+++++
T Consensus       110 ~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~-~~~~lk~~w~~l~~ayl~EakW~~~g~vPt~eEYl~~~~vS~~~~~l~  188 (328)
T d1n1ba2         110 RLPYYMQLCYWGVHNYISDAAYDILKEHGFF-CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII  188 (328)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhceehhhHHHHH
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCC-chHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHH
Q 044462          161 LHAYAFTANPI-TKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAE  239 (299)
Q Consensus       161 ~~~~~~~g~~l-~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~  239 (299)
                      +++++++|..+ ++++++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|||+++++++|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~~~s~v~cymke~~~s~eeA~~~i~~~ie~  268 (328)
T d1n1ba2         189 SPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIRE  268 (328)
T ss_dssp             HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCCcchHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            99999998866 55679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462          240 TWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP  299 (299)
Q Consensus       240 ~~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~  299 (299)
                      .||++|++++++++ +|++|+++++|+||+++++|+++||||+| +.||+||++|||+||.
T Consensus       269 ~wk~ln~e~l~~~~-vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k~~I~~ll~ePvs  328 (328)
T d1n1ba2         269 AWKDMNTAIAAGYP-FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA  328 (328)
T ss_dssp             HHHHHHHHHHTCCS-SCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhccCCC
Confidence            99999999999888 99999999999999999999999999999 5799999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure