Citrus Sinensis ID: 044468

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
Protein Sequence
GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSLY
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccccccccccccEEEcccccccccccHHHHHccccHHHHHHHHccccccEEEEEEcccHHHHHHHHHccccccEEEcccEEEccccccccccccccccccccEEccccccccccccccccEEEEccccccccccEEEEccccccccccccccccccEEEEcccccccccccccccccccHHccccccccccccEEEccccccccEEcccccccccccEEEEccccccccccccccccccccEEEEccHHHHHHcccccHHHHHHHccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHEEEcccccHHHccccccccccEEEEEEccccccccHHHHHHcccEEEEEccccccHHHccHHHHHHHEEEEEEcccccHHHccHHHHHHHHHHEEEccccccHcHccccHHHcHHccEEEEEEccccccccccccccccccHHHHHHHHHHHHccHccEEEccHHHHHHHHccHHHHHHHHHHHHHHcccccccEEccccHHcHcHcEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccccHHHHEcccccEEEEcccHHHHHHEcccccccccccccccccccHHHEEEEEcccHHHHHHHcccccccccEEEEEEccccHcccccccccccccEEEEEccHHHHHHcccccHHHHHHccccccccc
Coil and Loop (DISEMBL)
gagltgaprigMWKEITRMSLMQNAIQNltetptcphlralflhsnhlgtvsnnfFHSMASLRVLIFLYNrslenlplgILNLVSlqhldlswtgittLPIELKYLVNLKClnleytfclsripqpvisDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYcnssrsintQSLCLRHlnnsnllsaFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSihssylpfprlkEICVWKCAelkklpldcnqGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSLY
Flexible Loop (DISEMBL)
gagltgaprigMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSLY
Low Complexity Region (SEG)
GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSevlveellalkhlnlltvtlQIFGALQRLLNYCNSSRSINTQSLCLRHlnnsnllsafsfaslRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSLY
Disordered region (IsUnstruct)
********RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACF****
Disordered Region (DISOPRED)
GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEII********************RLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL***********IKGQDRWWNELQWDDQATQNASLACFQSLY
Disordered Region (DISEMBL)
GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSLY
Disordered Region (DISPRO)
***LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEK********MDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	396	2.2.26 [Sep-21-2011]
Q8RXS5	888	Probable disease resistan	yes	no	0.939	0.418	0.344	2e-41
Q9FLB4	874	Putative disease resistan	no	no	0.929	0.421	0.329	1e-38
Q9SH22	884	Probable disease resistan	no	no	0.909	0.407	0.333	1e-36
O64973	889	Disease resistance protei	no	no	0.921	0.410	0.321	5e-36
Q9SI85	893	Probable disease resistan	no	no	0.891	0.395	0.322	3e-34
Q9C8T9	898	Putative disease resistan	no	no	0.909	0.400	0.340	2e-33
Q9LVT3	948	Probable disease resistan	no	no	0.883	0.369	0.319	3e-33
O64789	925	Probable disease resistan	no	no	0.898	0.384	0.323	1e-31
O82484	892	Putative disease resistan	no	no	0.931	0.413	0.314	1e-31
O22727	967	Probable disease resistan	no	no	0.924	0.378	0.330	3e-31

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 206/401 (51%), Gaps = 29/401 (7%)

Query: 2   AGLTGA--PRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSM 59
           AGL     P I  WK   R+SLM N I+++ + P  P L  L L  N LG +S++FF  M
Sbjct: 497 AGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLM 556

Query: 60  ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
             L VL    NR L +LP  I   VSLQ+L LS T I   P  L  L  L  LNLEYT  
Sbjct: 557 PMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRM 616

Query: 120 LSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ 179
           +  I    IS L  L+ LR+F  GF            +   ++ EL  L++L  LT+TL 
Sbjct: 617 VESICG--ISGLTSLKVLRLFVSGFP-----------EDPCVLNELQLLENLQTLTITLG 663

Query: 180 IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI 239
           +   L++ L+  N   +  T++L + +LN  + + +F  A++  L  LH   +D  E+ +
Sbjct: 664 LASILEQFLS--NQRLASCTRALRIENLNPQSSVISF-VATMDSLQELHFADSDIWEIKV 720

Query: 240 DAGE----VKRIRETRGFHSLQKVYINY-SKFRHATWLVLAPRAKVIRISNCQRLQEIIS 294
              E    +     T  F +L +V + + ++ R  TWL+ AP   V+R+ +   L+E+I+
Sbjct: 721 KRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVIN 780

Query: 295 MEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLP 354
            EK  +       NLI F  L+ L LE +Q LK IH   LPFP L++I V  C+EL+KLP
Sbjct: 781 KEKAEQ------QNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLP 834

Query: 355 LDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSL 395
           L+        ++I+   +W   L+W+D+AT+   L   ++ 
Sbjct: 835 LNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLPTLKAF 875

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 193/392 (49%), Gaps = 24/392 (6%)

Query: 2   AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMAS 61
           A L   P+I   K + RMSL+ N I+   E+  CP L  L L  N L  +S  F   +  
Sbjct: 493 AQLRDIPKIEDQKAVRRMSLIYNQIEEACESLHCPKLETLLLRDNRLRKISREFLSHVPI 552

Query: 62  LRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLS 121
           L VL    N +L  LP     L SL+ L+LS TGIT+LP  L  L NL  LNLE+T+ L 
Sbjct: 553 LMVLDLSLNPNLIELP-SFSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLK 611

Query: 122 RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIF 181
           RI +  I DL  L  L+++  G  +           ++ LV ++ A+KHL LLT+TL+  
Sbjct: 612 RIYE--IHDLPNLEVLKLYASGIDI-----------TDKLVRQIQAMKHLYLLTITLRNS 658

Query: 182 GALQRLLNYCNSSRSINTQSLCLRHLNNSN----LLSAFSFASLRHLWTLHLYFNDFEEL 237
             L+  L   ++  S  T+ L L   +        L+  S +    +   H+   + E  
Sbjct: 659 SGLEIFLG--DTRFSSYTEGLTLDEQSYYQSLKVPLATISSSRFLEIQDSHIPKIEIEGS 716

Query: 238 NIDAGEV--KRIRETRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIIS 294
           + +  E+   R+R    F +L+KV + N +  +  TWLV AP    + +     ++ IIS
Sbjct: 717 SSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIIS 776

Query: 295 MEKLGEISAEV-MDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKL 353
             +   +     +  +I F  LE+L L  L  LKSI+   L F +LKEI +  C +L KL
Sbjct: 777 RSEESRLQKTCELAGVIPFRELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKL 836

Query: 354 PLDCNQGLEQKIIIKGQDRWWNELQWDDQATQ 385
           PLD     +Q ++I  ++ W   LQW+D AT+
Sbjct: 837 PLDSRSAWKQNVVINAEEEWLQGLQWEDVATK 868

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 202/411 (49%), Gaps = 51/411 (12%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLG-------TVSN 53
           G G+   P+I  W  + RMSLM+N I +L  +  C  L  L L     G       T+S+
Sbjct: 502 GVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISS 561

Query: 54  NFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLN 113
            FF+ M  L VL   +N+SL  LP  I NLVSL++L+L +T I+ LP  ++ L  +  LN
Sbjct: 562 EFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLN 621

Query: 114 LEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173
           LEYT  L  I    IS L  L+ L++F      +              V+EL  L+HL +
Sbjct: 622 LEYTRKLESITG--ISSLHNLKVLKLFRSRLPWDLNT-----------VKELETLEHLEI 668

Query: 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAF--SFASL-RHLWTLHLY 230
           LT T+       R   + +S R           L++S LL  +  S +SL RHL +L + 
Sbjct: 669 LTTTID-----PRAKQFLSSHRL----------LSHSRLLEIYGSSVSSLNRHLESLSVS 713

Query: 231 FNDFEELNIDAGEVKRIRETR--GFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQ 287
            +   E  I +  +  I+      F SL  V I N    R  T+L+ AP+ + + + + +
Sbjct: 714 TDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAK 773

Query: 288 RLQEIISMEKL--GEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVW 345
            L++II+ EK   GE S      ++ F  L +L L  L  LK I+   LPF  L+EI + 
Sbjct: 774 DLEDIINEEKACEGEESG-----ILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIR 828

Query: 346 KCAELKKLPLDCNQGL--EQKIIIKGQD-RWWNELQWDDQATQNASLACFQ 393
           +C  L+KLPLD   G   E   II+ +D RW+  ++W D+AT+   L   Q
Sbjct: 829 ECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLPSCQ 879

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  152 bits (384), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 195/392 (49%), Gaps = 27/392 (6%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G GL   P++  W  + ++SLM N I+ + ++  C  L  LFL  N +  +S  FF  M 
Sbjct: 504 GVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMP 563

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
            L VL    N+SL  LP  I  L SL++ +LS+T I  LP+ L  L  L  LNLE+   L
Sbjct: 564 HLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSL 623

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI 180
             I    IS+L  LR L + +          R+L   S  LV+EL  L+HL ++T+ +  
Sbjct: 624 GSILG--ISNLWNLRTLGLRD---------SRLLLDMS--LVKELQLLEHLEVITLDISS 670

Query: 181 FGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNID 240
               + LL  C+       + +  ++L   + +   +  ++ +L  L +      E+ I+
Sbjct: 671 SLVAEPLL--CSQRLVECIKEVDFKYLKEES-VRVLTLPTMGNLRKLGIKRCGMREIKIE 727

Query: 241 AGEVKRIRE----TRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISM 295
                  R     T  F +L +V+I      +  TWL+ AP    + +   + +++IIS 
Sbjct: 728 RTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISE 787

Query: 296 EKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL 355
           EK  E SA     ++ F +LE L L  L+ LK I++  L FP LK I V KC +L+KLPL
Sbjct: 788 EKAEEHSA----TIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPL 843

Query: 356 DCNQGL--EQKIIIKGQDRWWNELQWDDQATQ 385
           D   G+  E+ +I  G+  W   ++W+DQATQ
Sbjct: 844 DSKSGIAGEELVIYYGEREWIERVEWEDQATQ 875

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 131/406 (32%), Positives = 198/406 (48%), Gaps = 53/406 (13%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLG---------TV 51
           G G+   P++  W  + RMSLM N I +L  +  C  L  L L     G         T+
Sbjct: 502 GVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTI 561

Query: 52  SNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKC 111
           S+ FF+ M  L VL   +N+SL  LP  I NLVSL++L+LS TGI  L   ++ L  +  
Sbjct: 562 SSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIH 621

Query: 112 LNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL 171
           LNLE+T  L  I    IS L  L+ L+++  G ++  + +          V+EL  L+HL
Sbjct: 622 LNLEHTSKLESIDG--ISSLHNLKVLKLY--GSRLPWDLN---------TVKELETLEHL 668

Query: 172 NLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFS---FASLRHLWTLH 228
            +LT T+       R   + +S R           ++ S LL  F    F+  R L +L 
Sbjct: 669 EILTTTID-----PRAKQFLSSHRL----------MSRSRLLQIFGSNIFSPDRQLESLS 713

Query: 229 LYFNDFEELNIDAGEVKRIRETR--GFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISN 285
           +  +   E  I    +  I+      F SL  V I N    R  T+L+ AP+ + + + +
Sbjct: 714 VSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVD 773

Query: 286 CQRLQEIISMEKL--GEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEIC 343
            + L++II+ EK   GE S      ++ F  L+YL L+ L  LK+I+   LPF  L++I 
Sbjct: 774 AKDLEDIINEEKACEGEDSG-----IVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKIT 828

Query: 344 VWKCAELKKLPLDCNQGL--EQKIIIKGQD-RWWNELQWDDQATQN 386
           + +C  L+KLPLD   G   E   II  +D RW   ++W D+AT+ 
Sbjct: 829 IGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKK 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 136/399 (34%), Positives = 197/399 (49%), Gaps = 39/399 (9%)

Query: 2   AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMAS 61
            GL    ++  W  + RMSLM+N I +L     C  L  L L S HL  +S+ FF+SM  
Sbjct: 503 VGLREILKVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPK 562

Query: 62  LRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLS 121
           L VL    N  L  LP GI  LVSLQ+L+LS TGI  LP  L+ L  L  L LE T  L 
Sbjct: 563 LAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLG 622

Query: 122 RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ-- 179
            +    IS L  L+ L++    +  + +            V+EL AL+HL +LT T+   
Sbjct: 623 SMVG--ISCLHNLKVLKLSGSSYAWDLDT-----------VKELEALEHLEVLTTTIDDC 669

Query: 180 IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI 239
             G  Q    + +S R ++    C+R L  SN  +    +S     +L +  +  +E  I
Sbjct: 670 TLGTDQ----FLSSHRLMS----CIRFLKISNNSNRNRNSSRI---SLPVTMDRLQEFTI 718

Query: 240 DAGEVKRIRETR--GFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISME 296
           +      I+  R   F SL +V + N  + R  T+L+ AP  K + + +  +L++II+ E
Sbjct: 719 EHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKE 778

Query: 297 KL--GEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLP 354
           K   GE S      ++ F +L  L L  L+ LK+I+ S LPFP L++I V  C  LKKLP
Sbjct: 779 KAHDGEKSG-----IVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLP 833

Query: 355 LDCNQGLEQK---IIIKGQDRWWNELQWDDQATQNASLA 390
           LD   G       II   +  W   ++W+D+AT+   LA
Sbjct: 834 LDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRFLA 872

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 196/379 (51%), Gaps = 29/379 (7%)

Query: 13  WKEITRMSLMQNAIQNLTETPTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNR 71
           W+ I RMS+    IQN++++P C  L  L    N HL  +S  FF  M  L VL   +NR
Sbjct: 496 WRMIRRMSVTSTQIQNISDSPQCSELTTLVFRRNRHLKWISGAFFQWMTGLVVLDLSFNR 555

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            L  LP  + +LV L+ L+LSWT I  LP+ LK L +L  L+L+YT  L  +   VI+ L
Sbjct: 556 ELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTSNLQEV--DVIASL 613

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYC 191
             L+ LR+F     V  +           L+E++  LK L  L++T++    LQRLL+  
Sbjct: 614 LNLQVLRLFH---SVSMDLK---------LMEDIQLLKSLKELSLTVRGSSVLQRLLSIQ 661

Query: 192 NSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETR 251
             + SI    L    + +  +LS  +  SL  L  L     +  E+ ID     +     
Sbjct: 662 RLASSIRRLHLTETTIVDGGILSLNAIFSLCELDILGC---NILEITIDWRCTIQREIIP 718

Query: 252 GFHSLQKVYINYSKF-RHATWLVLAPRAKVIRISNCQRLQEIIS----MEKLGEISAEVM 306
            F +++ + I+  ++ R  TWL+LAP    + +S C +++E+IS    M KLG  S +  
Sbjct: 719 QFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAMAKLGNTSEQPF 778

Query: 307 DNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKII 366
            NL        L+L+GL  L+SI+ + LPFP L+ + + +C EL++LP +    +  ++ 
Sbjct: 779 QNLT------KLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSESTIGNQVE 832

Query: 367 IKGQDRWWNELQWDDQATQ 385
              +++    ++W+D+AT+
Sbjct: 833 TIIEEQVIKIVEWEDEATK 851

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/393 (32%), Positives = 190/393 (48%), Gaps = 37/393 (9%)

Query: 2   AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMAS 61
           AGL   P +  W  + RMSLM+N I+ +T    C  L  LFL SN L  +S  F   M  
Sbjct: 512 AGLHEIPEVKDWGAVRRMSLMRNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQK 571

Query: 62  LRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLS 121
           L VL    NR    LP  I  LVSLQ+LDLS+T I  LP+ LK L  L  L+L YT  L 
Sbjct: 572 LVVLDLSDNRDFNELPEQISGLVSLQYLDLSFTRIEQLPVGLKELKKLTFLDLAYTARLC 631

Query: 122 RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTL--Q 179
            I          + +L   +            + GD+ VL +EL  L++L  L +TL  +
Sbjct: 632 SISGISRLLSLRVLSLLGSK------------VHGDASVL-KELQQLENLQDLAITLSAE 678

Query: 180 IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE--EL 237
           +    QRL    +    +  +    +  + S L    S  +L  LW  + YF++ +  E 
Sbjct: 679 LISLDQRLAKVIS---ILGIEGFLQKPFDLSFLA---SMENLSSLWVKNSYFSEIKCRES 732

Query: 238 NIDAGEVKRIRETRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISME 296
             D+  +    +   F +L ++ I      +  TW++ AP   V+ I + + + EII+ E
Sbjct: 733 ETDSSYLHINPKIPCFTNLSRLDIVKCHSMKDLTWILFAPNLVVLFIEDSREVGEIINKE 792

Query: 297 KLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLD 356
           K     A  + ++  F +LE LIL  L  L+SI+ S LPFP L  I V +C +L+KLPL+
Sbjct: 793 K-----ATNLTSITPFLKLERLILCYLPKLESIYWSPLPFPLLLNIDVEECPKLRKLPLN 847

Query: 357 CNQGL---EQKIIIKGQDRWWNELQWDDQATQN 386
                   E +I++     +  EL+W+D+ T+N
Sbjct: 848 ATSAPKVEEFRILM-----YPPELEWEDEDTKN 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 197/394 (50%), Gaps = 25/394 (6%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH-LGTVSNNFFHSM 59
           G+GL   P++  W  + R+SLM N I+ ++ +P CP L  LFL  N  L  +S  FF  M
Sbjct: 501 GSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHM 560

Query: 60  ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
             L VL    N  L+ LP  I  LV+L++LDLS T I  LP  L+ L  L  LNLE   C
Sbjct: 561 RKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLE---C 617

Query: 120 LSRIPQPV-ISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTL 178
           + R+     IS L  LR L +      ++  +           V+EL  L+HL +LT+ +
Sbjct: 618 MRRLGSIAGISKLSSLRTLGLRNSNIMLDVMS-----------VKELHLLEHLEILTIDI 666

Query: 179 QIFGALQRLLNYCNSSRSINTQSL-CLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
                L+++++       +   S+ CL +    +  +     ++  L +L ++  +  E+
Sbjct: 667 VSTMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQD--TKLRLPTMDSLRSLTMWNCEISEI 724

Query: 238 NIDAGEVKRIRETRGFHSLQKVYINY-SKFRHATWLVLAPRAKVIRISNCQRLQEIISME 296
            I+         +  F +L +V I+  S  +  TWL+ AP    + I   ++LQE+IS  
Sbjct: 725 EIERLTWNTNPTSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHA 784

Query: 297 KLGEISAEVMDNL---ILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKL 353
           K   ++ E    L   I F +L+ L L  L  LKSI+   L FP L  I V +C +L+KL
Sbjct: 785 KATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKL 844

Query: 354 PLDCNQG-LEQKIIIKGQDRWWNE-LQWDDQATQ 385
           PLD   G + +K +++ ++  W E ++W D+AT+
Sbjct: 845 PLDSKTGTVGKKFVLQYKETEWIESVEWKDEATK 878

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 135/408 (33%), Positives = 194/408 (47%), Gaps = 42/408 (10%)

Query: 2   AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMAS 61
            GL   P++  W  + RMSLM N I+ +T    C  L  LFL SN L  +S  F   M  
Sbjct: 503 VGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQK 562

Query: 62  LRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLS 121
           L VL   +N     LP  I  LVSLQ+LDLSWT I  LP+ LK L  L  LNL +T  L 
Sbjct: 563 LVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLC 622

Query: 122 RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVT--LQ 179
            I    IS L  LR L + E            + GD+ VL +EL  L++L  L +T   +
Sbjct: 623 SISG--ISRLLSLRWLSLRESN----------VHGDASVL-KELQQLENLQDLRITESAE 669

Query: 180 IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI 239
           +    QRL    +  R    +    +  + S L      AS+ +L+ L +  + F E+NI
Sbjct: 670 LISLDQRLAKLISVLR---IEGFLQKPFDLSFL------ASMENLYGLLVENSYFSEINI 720

Query: 240 DAGEVKRIRETRGFHSLQKV--YINYS--------KFRHATWLVLAPRAKVIRISNCQRL 289
              E +   E+   H   K+  + N +          +  TW++ AP    + I + + +
Sbjct: 721 KCRESE--TESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREV 778

Query: 290 QEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAE 349
            EII+ EK   +++ +      F +LE L L GL  L+SI+ S LPFP L  I V  C +
Sbjct: 779 GEIINKEKAINLTSIITP----FQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPK 834

Query: 350 LKKLPLDCNQG--LEQKIIIKGQDRWWNELQWDDQATQNASLACFQSL 395
           L+KLPL+      +E+  I        NEL+W+D+ T+N  L   + L
Sbjct: 835 LRKLPLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRFLPSIKPL 882

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
24461866	890	NBS-LRR type disease resistance protein	0.974	0.433	0.466	3e-78
24461865	892	NBS-LRR type disease resistance protein	0.977	0.433	0.465	5e-74
24461861	890	NBS-LRR type disease resistance protein	0.964	0.429	0.463	5e-71
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.952	0.459	0.410	3e-69
24461863	889	NBS-LRR type disease resistance protein	0.964	0.429	0.435	2e-68
24461864	899	NBS-LRR type disease resistance protein	0.974	0.429	0.436	5e-68
359482672	905	PREDICTED: probable disease resistance p	0.979	0.428	0.431	2e-66
225442867	893	PREDICTED: probable disease resistance p	0.952	0.422	0.424	3e-64
147852651	882	hypothetical protein VITISV_017542 [Viti	0.904	0.405	0.418	1e-63
359482674	991	PREDICTED: probable disease resistance p	0.941	0.376	0.42	3e-63

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 186/399 (46%), Positives = 244/399 (61%), Gaps = 13/399 (3%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G GL  AP +  W++  R+SLM N I NL+E  TCPHL  LFL+ N L  + N+FF  M 
Sbjct: 500 GVGLIEAPDVSGWEKARRLSLMHNQITNLSEVATCPHLLTLFLNENELQMIHNDFFRFMP 559

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
           SL+VL  L + SL NLP GI  LVSLQHLDLS + I  LP+ELK LVNLKCLNLEYT+ L
Sbjct: 560 SLKVL-NLADSSLTNLPEGISKLVSLQHLDLSKSSIEELPLELKALVNLKCLNLEYTWSL 618

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQEA--DRILFGDSEVLVEELLALKHLNLLTVTL 178
           + IP+ +IS+L  L  LRMF         A  D ILFG  E++VEELL LK+L +++ TL
Sbjct: 619 TTIPRQLISNLSRLHVLRMFAASHSAFDRASEDSILFGGGELIVEELLGLKYLEVISFTL 678

Query: 179 QIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY-FNDFEEL 237
           +    LQ  L+  +  RS  T++L L+  N+S  L   + A L+ L  L +      EEL
Sbjct: 679 RSSHGLQSFLS-SHKLRSC-TRALLLQCFNDSTSLEVSALADLKQLNRLWITECKKLEEL 736

Query: 238 NID-AGEVKRIRETRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISM 295
            +D   EV++      FHSL+KV I   SK +  T+LV AP  + I +  C  ++E++SM
Sbjct: 737 KMDYTREVQQFV----FHSLKKVEILACSKLKDLTFLVFAPNLESIELMGCPAMEEMVSM 792

Query: 296 EKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL 355
            K  E+  EV+ NL  F +L+ L L G  NLKSI+   LPFP LK +    C +LKKLPL
Sbjct: 793 GKFAEV-PEVVANLNPFAKLQNLKLFGATNLKSIYWKPLPFPHLKSMSFSHCYKLKKLPL 851

Query: 356 DCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQS 394
           D N   E+ I+I G  RWW +L+W D+AT+NA L CF S
Sbjct: 852 DSNSARERNIVISGTRRWWEQLEWVDEATRNAFLPCFDS 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 186/400 (46%), Positives = 245/400 (61%), Gaps = 13/400 (3%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G GL  AP +  W++  R+SLMQN I+NL+E PTCPHL  L L+ N+L  + N FF  M 
Sbjct: 501 GVGLVEAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLLLNENNLRKIQNYFFQFMP 560

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
           SL+VL  L +  L  LP+GI  LVSLQHLDLS + I   P ELK LVNLKCL+LEYT  L
Sbjct: 561 SLKVL-NLSHCELTKLPVGISELVSLQHLDLSESDIEEFPGELKALVNLKCLDLEYTRNL 619

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQEA--DRILFGDSEVLVEELLALKHLNLLTVTL 178
             IP+ +IS+L  LR LRMF        EA  + ILFG  E++VEELL LKHL ++T+TL
Sbjct: 620 ITIPRQLISNLSRLRVLRMFGASHNAFDEASENSILFGGGELIVEELLGLKHLEVITLTL 679

Query: 179 QIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFND-FEEL 237
           +    LQ  LN  +  RS  TQ+L L+H  +S  L   + A L+ L  L +  +   EEL
Sbjct: 680 RSSYGLQSFLN-SHKLRSC-TQALLLQHFKDSTSLEVSALADLKQLNRLQIANSVILEEL 737

Query: 238 NID-AGEVKRIRETRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISM 295
            +D A EV++      F SL  V I N  + +  T+LV AP  K I++  C  ++EI S 
Sbjct: 738 KMDYAEEVQQF----AFRSLNMVEICNCIQLKDLTFLVFAPNLKSIKVGICHAMEEIASE 793

Query: 296 EKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL 355
            K  E+  EVM NL  F +L+ L + G +NLKSI+   LPFP LK +    C +LKKLPL
Sbjct: 794 GKFAEV-PEVMANLNPFEKLQNLEVAGARNLKSIYWKSLPFPHLKAMSFLHCKKLKKLPL 852

Query: 356 DCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSL 395
           D N   E+KI+I G+  W  +LQW+D+AT+NA L CF+ +
Sbjct: 853 DSNSAKERKIVISGERNWREQLQWEDEATRNAFLRCFRDV 892

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 186/401 (46%), Positives = 246/401 (61%), Gaps = 19/401 (4%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH-LGTVSNNFFHSM 59
           GAGL  AP +  W+++ R+SLM+N I+NL+E PTCPHL  LFL+S+  L  ++++F  SM
Sbjct: 502 GAGLREAPDVIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNSDDILWRINSDFLQSM 561

Query: 60  ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
             L+VL       L  LPLGI  LVSL++LDLS + I+ +P ELK LVNLKCLNLEYT  
Sbjct: 562 LRLKVLNLSRYMGLLVLPLGISKLVSLEYLDLSTSLISEIPEELKALVNLKCLNLEYTGR 621

Query: 120 LSRIPQPVISDLKMLRALRMFECGF--KVEQEADRILFGDSEVLVEELLALKHLNLLTVT 177
           L +IP  +IS+   L  LRMF   +        + +LFG  E+LVEELL LKHL +L++T
Sbjct: 622 LLKIPLQLISNFSRLHVLRMFGNAYFSYGNYPIESVLFGGGELLVEELLGLKHLEVLSLT 681

Query: 178 LQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY-FNDFEE 236
           L    ALQ  L   +  RS  T+++ L+    S  +     A L+ L  L +    +  E
Sbjct: 682 LGSSRALQSFLT-SHMLRSC-TRAMLLQDFQGSTSVDVSGLADLKRLKRLRISDCYELVE 739

Query: 237 LNID-AGEVKRIRETRGFHSLQKVYINY-SKFRHATWLVLAPRAKVIRISNCQRLQEIIS 294
           L ID AGEV+R     GFHSLQ   +NY SK +  T LVL P  K I +++C+ ++EIIS
Sbjct: 740 LKIDYAGEVQRY----GFHSLQSFEVNYCSKLKDLTLLVLIPNLKSIEVTDCEAMEEIIS 795

Query: 295 MEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLP 354
           +        E   N   F +L+YL +  L NLKSI+   LPFP L+E+ V  C ELKKLP
Sbjct: 796 V-------GEFAGNPNAFAKLQYLGIGNLPNLKSIYWKPLPFPCLEELTVSDCYELKKLP 848

Query: 355 LDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSL 395
           LD N   E KI+I+G   WW  LQW+D+ATQNA L+CFQSL
Sbjct: 849 LDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAFLSCFQSL 889

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/402 (41%), Positives = 225/402 (55%), Gaps = 25/402 (6%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G  L  AP +G W+ + R+SLM N IQNL++ P C  L  LFL  N+L  +S+ FF  M 
Sbjct: 433 GTQLADAPEVGKWEVVRRVSLMANNIQNLSKAPRCNDLVTLFLKKNNLKMISDTFFQFML 492

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
           SL+VL    NR +   P GIL LVSLQ+L+LS TGI  LP++LK LV LKCLNLE+T+ L
Sbjct: 493 SLKVLDLSENREITEFPSGILKLVSLQYLNLSRTGIRQLPVQLKNLVKLKCLNLEHTYEL 552

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVT--- 177
             IP  VIS+   L  LRMF C        D +  G    L  +L  L+HLNLLT+T   
Sbjct: 553 RTIPMQVISNFSSLTVLRMFHCASSDSVVGDGVQTGGPGSLARDLQCLEHLNLLTITIRS 612

Query: 178 ---LQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY-FND 233
              LQ F +  + L          TQ+L L+  +++  L       +  L  L L   ++
Sbjct: 613 QYSLQTFASFNKFLTA--------TQALSLQKFHHARSLDISLLEGMNSLDDLELIDCSN 664

Query: 234 FEELNIDAGEVKRIRETRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEI 292
            ++L+I+   +   RET  F+SL++V I N +K     WL LAP  K + IS C +++EI
Sbjct: 665 LKDLSINNSSI--TRET-SFNSLRRVSIVNCTKLEDLAWLTLAPNIKFLTISRCSKMEEI 721

Query: 293 ISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKK 352
           I  EK G+       NL +F  LE+L L  L  LK I+   LPFP LKEI V  C  L+K
Sbjct: 722 IRQEKSGQ------RNLKVFEELEFLRLVSLPKLKVIYPDALPFPSLKEIFVDDCPNLRK 775

Query: 353 LPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQS 394
           LPL+ N   E +I+I+G + WW  L+W+D+A Q+  L  F+ 
Sbjct: 776 LPLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTFLHSFKG 817

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 177/406 (43%), Positives = 237/406 (58%), Gaps = 24/406 (5%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH-LGTVSNNFFHSM 59
           GAGL  AP +  W+ + R+SLMQN I+ L+E PTCP L  LFL SN+ L  +++ FF  M
Sbjct: 492 GAGLEQAPAVKEWENVRRLSLMQNDIKILSEVPTCPDLHTLFLASNNNLQRITDGFFKFM 551

Query: 60  ASLRVLIFLYNRSLE--NLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYT 117
            SL+VL   +   L+   LPLG+  L SL+ LD+S T I  LP ELK LVNLKCLNL + 
Sbjct: 552 PSLKVLKMSHCGDLKVLKLPLGMSMLGSLELLDISQTSIGELPEELKLLVNLKCLNLRWA 611

Query: 118 FCLSRIPQPVISDLKMLRALRMFECGFK-VEQEADRILFGDSEVLVEELLALKHLNLLTV 176
             LS+IP+ +IS+   L  LRMF  G    E   D +LFG  EVL++ELL LK+L +L +
Sbjct: 612 TWLSKIPRQLISNSSRLHVLRMFATGCSHSEASEDSVLFGGGEVLIQELLGLKYLEVLEL 671

Query: 177 TLQIFGALQRLLNYCNSSRSINTQSLCLRHL------NNSNLLSAFSFASLRHLWTLHL- 229
           TL+   ALQ          S N    C+R L         +++ A +FA L HL  L + 
Sbjct: 672 TLRSSHALQLFF-------SSNKLKSCIRSLLLDEVRGTKSIIDATAFADLNHLNELRID 724

Query: 230 YFNDFEELNIDAGE-VKRIRETRGFHSLQKVYINYS-KFRHATWLVLAPRAKVIRISNCQ 287
              + EEL ID  E V++ RE   F SL +V +    K +  T+LV AP  K +++ NC+
Sbjct: 725 SVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAPNLKSLQLLNCR 784

Query: 288 RLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKC 347
            ++EIIS+ K  E+  EVM ++  F  L+ L L  L  LKSI+   LPF  LKE+ V  C
Sbjct: 785 AMEEIISVGKFAEV-PEVMGHISPFENLQRLHLFDLPRLKSIYWKPLPFTHLKEMRVHGC 843

Query: 348 AELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQ 393
            +LKKLPLD N     K +I+G+   WN LQW+D ATQ A  +CFQ
Sbjct: 844 NQLKKLPLDSNSA---KFVIRGEAEGWNRLQWEDDATQIAFRSCFQ 886

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 174/399 (43%), Positives = 231/399 (57%), Gaps = 13/399 (3%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH-LGTVSNNFFHSM 59
           GAGLT AP +  W+   R+SLM+  I+NL+E PTC HL  LFL  N  L  ++ +FF SM
Sbjct: 509 GAGLTEAPNVREWENAKRLSLMETQIRNLSEVPTCLHLLTLFLVFNEELEMITGDFFKSM 568

Query: 60  ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
             L+VL     R + + PLG+  LVSLQHLDLS T I  LP EL  L NLK LNL+ T  
Sbjct: 569 PCLKVLNLSGARRMSSFPLGVSVLVSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHY 628

Query: 120 LSRIPQPVISDLKMLRALRMFECG--FKVEQEADRILFGDSEVLVEELLALKHLNLLTVT 177
           L  IP+ +IS    L  LRMF  G      +  D  LF   ++LVE L  LKHL +L++T
Sbjct: 629 LITIPRQLISRFSCLVVLRMFGVGDWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLT 688

Query: 178 LQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
           L     LQ +LN     RS  TQ+L L     S  L   + A L HL    L+ ++ EEL
Sbjct: 689 LNNSQDLQCVLNS-EKLRSC-TQALYLHSFKRSEPLDVSALAGLEHL--NRLWIHECEEL 744

Query: 238 NIDAGEVKRIRETRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISME 296
                E+K  R+   F SL+K+ I    + ++ T+L+ AP  K I +S+C  ++EIIS  
Sbjct: 745 E----ELKMARQPFVFQSLEKIQIYGCHRLKNLTFLLFAPNLKSIEVSSCFAMEEIISEV 800

Query: 297 KLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLD 356
           K  +   EVM  +  F +L  L L GL  LKSI+   LPFP L+++ V  C EL+KLPLD
Sbjct: 801 KFADF-PEVMPIIKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLD 859

Query: 357 CNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACFQSL 395
            N   E+KI+I+G  +WW +LQW+DQ TQNA   CF+S+
Sbjct: 860 SNSAKERKIVIRGYTKWWEQLQWEDQDTQNAFRPCFRSI 898

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 175/406 (43%), Positives = 233/406 (57%), Gaps = 18/406 (4%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G+ LT AP +  W    R+SLM N I+ LT +P CP+L  LFL  N L  +S+ FF  M 
Sbjct: 499 GSTLTEAPEVAEWMGPKRISLMDNQIEELTGSPKCPNLSTLFLADNSLKMISDTFFQFMP 558

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
           SLRVL    N S+  LP GI NLVSLQ+L+LS T I  LPIELK L  LKCL L     L
Sbjct: 559 SLRVLDLSKN-SITELPRGISNLVSLQYLNLSQTNIKELPIELKNLDKLKCLVLVDMPQL 617

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQE-ADRILFGDSEVLVEELLALKHLNLLTVTLQ 179
           S IP+ +IS L ML+ + MF  G        D IL  D+E LV+EL +LK+L+ L V+++
Sbjct: 618 SSIPEQLISSLSMLQVIDMFNSGISERTVLKDGILSDDNEALVQELESLKYLHGLGVSVK 677

Query: 180 IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHL-YFNDFEELN 238
              A +RLL+  +    I    LCL++ N S+ L+  S ++ + L +L++      E+L 
Sbjct: 678 SASAFKRLLS--SYKLRICISGLCLKNFNGSSSLNLTSLSNAKCLSSLYISKCGSLEDLE 735

Query: 239 ID-AGEVKRIRETR----------GFHSLQKVYINY-SKFRHATWLVLAPRAKVIRISNC 286
           ID AGE K   E+            FHSL  + I   S+ +  TWLV  P  KV+ I +C
Sbjct: 736 IDWAGEGKETVESNYLNSKVSSHNSFHSLVWLGIERCSRLKDLTWLVFVPNLKVLTIIDC 795

Query: 287 QRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWK 346
            ++QE+I   K GE SAE  +NL  F +L+ L L+ L  LKSI    LPF  L  I V  
Sbjct: 796 DQMQEVIGTGKCGE-SAENGENLSPFVKLQVLELDDLPQLKSIFWKALPFIYLNTIHVRN 854

Query: 347 CAELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACF 392
           C  LKKLPL  N     +I+I G ++WWNE++W+D+ATQN  L CF
Sbjct: 855 CPLLKKLPLSANSAKGNRIVIAGHNKWWNEVEWEDEATQNVFLPCF 900

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 172/405 (42%), Positives = 229/405 (56%), Gaps = 28/405 (6%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
            +GLT AP +  W    R+SL+ N I+ LT +P CP+L  LFL  N L  ++++FF  M 
Sbjct: 499 SSGLTEAPEVARWMGPKRISLIGNQIEKLTGSPNCPNLSTLFLQDNSLKMITDSFFQFMP 558

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
           +LRVL    N ++  LP GI NLVSLQ+L+LS T I  LPIELK L  LK L L +   L
Sbjct: 559 NLRVLDLSRN-AMTELPQGISNLVSLQYLNLSQTNIKELPIELKNLGKLKFL-LLHRMRL 616

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI 180
           S IP+ +IS L ML+ + MF CG         I  GD E LVEEL +LK+L+ L VT+  
Sbjct: 617 SSIPEQLISSLSMLQVIDMFNCG---------ICDGD-EALVEELESLKYLHDLGVTITS 666

Query: 181 FGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY-FNDFEELNI 239
             A +RLL+       I+   +CL + N S+ L+  S  +++ L  L +      E+L I
Sbjct: 667 ASAFKRLLSSDKLKSCIS--GVCLENFNGSSSLNLTSLCNVKRLRNLFISNCGSSEDLEI 724

Query: 240 D-AGEVKRIRETR----------GFHSLQKVYINY-SKFRHATWLVLAPRAKVIRISNCQ 287
           D A E K   E+            FH+L  + +   S+ +  TWLV AP  KV+ I++C 
Sbjct: 725 DWAWEGKETTESNYLNSKVSSHSSFHNLSWLRVKRCSRLKDLTWLVFAPNLKVLLITSCD 784

Query: 288 RLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKC 347
           ++QEII   K GE S E  +NL  F +L+ L LE L  LKSI    LPF  L  I V  C
Sbjct: 785 QMQEIIGTGKCGE-STENGENLSPFVKLQVLTLEDLPQLKSIFWKALPFIYLNTIYVDSC 843

Query: 348 AELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACF 392
             LKKLPLD N   E +I+I GQ  W+NEL W+++AT NA L CF
Sbjct: 844 PLLKKLPLDANSAKEHRIVISGQTEWFNELDWENEATHNAFLPCF 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 169/404 (41%), Positives = 227/404 (56%), Gaps = 46/404 (11%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G+ LT AP +  W    R+SLM N I+ LT +P CP+L  LFL  N L  ++++FF  M 
Sbjct: 499 GSTLTEAPEVAEWMGPKRISLMNNQIEKLTGSPICPNLSTLFLRENSLKMITDSFFQFMP 558

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
           +LRVL  L + S+  LP  I NLVSL++LDLS+T I  LPIELK L NLKCL L +   L
Sbjct: 559 NLRVLD-LSDNSITELPREISNLVSLRYLDLSFTEIKELPIELKNLGNLKCLLLSFMPQL 617

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI 180
           S +P+ +IS L ML+ + MF+CG         I  GD E LVEEL +LK+L+ L+VT+  
Sbjct: 618 SSVPEQLISSLLMLQVIDMFDCG---------ICDGD-EALVEELESLKYLHDLSVTITS 667

Query: 181 FGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNID 240
             A +RLL+   S +  +  S  LR+L  SN  S                    E+L ID
Sbjct: 668 TSAFKRLLS---SDKLRSCISRRLRNLFISNCGS-------------------LEDLEID 705

Query: 241 -AGEVKRIRETR----------GFHSLQKV-YINYSKFRHATWLVLAPRAKVIRISNCQR 288
             GE K+  E+            FHSL+ +  ++ S+ +  TW+  AP  KV+ I +C +
Sbjct: 706 WVGEGKKTVESNYLNSKVSSHNSFHSLEALTVVSCSRLKDLTWVAFAPNLKVLTIIDCDQ 765

Query: 289 LQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCA 348
           +QE+I   K  E SAE  +NL  F +L+ L L GL  LKSI    LP   L  I V  C 
Sbjct: 766 MQEVIGTRKSDE-SAENGENLGPFAKLQVLHLVGLPQLKSIFWKALPLIYLNRIHVRNCP 824

Query: 349 ELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNASLACF 392
            LKKLPL+ N     +I+I GQ  WWNE++W+D+AT NA L CF
Sbjct: 825 LLKKLPLNANSAKGHRIVISGQTEWWNEVEWEDEATHNAFLPCF 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 168/400 (42%), Positives = 228/400 (57%), Gaps = 27/400 (6%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G+ LT AP +  W    R+SLM N I+ LT +P CP+L  LFL  N L  ++++FF  M 
Sbjct: 499 GSTLTEAPEVAEWMGPKRISLMNNQIEKLTGSPICPNLSTLFLRENSLKMITDSFFQFMP 558

Query: 61  SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL 120
           +LRVL  L + S+  LP GI NLVSL++LDLS T I  LPIELK L NLKCL L     L
Sbjct: 559 NLRVLD-LSDNSITELPQGISNLVSLRYLDLSLTEIKELPIELKNLGNLKCLLLSDMPQL 617

Query: 121 SRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI 180
           S IP+ +IS L ML+ + M  CG         I  GD E LVEEL +LK+L+ L VT+  
Sbjct: 618 SSIPEQLISSLLMLQVIDMSNCG---------ICDGD-EALVEELESLKYLHDLGVTITS 667

Query: 181 FGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY-FNDFEELNI 239
             A +RLL+       I+  S+CLR+ N S+ L+  S  ++++L  L +      E L I
Sbjct: 668 TSAFKRLLSSDKLRSCIS--SVCLRNFNGSSSLNLTSLCNVKNLCELSISNCGSLENLVI 725

Query: 240 D-AGEVKRIRETR----------GFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQ 287
           D A E K+  E+            FHSL+ V I + S+ +  TW+  AP  K + I +C 
Sbjct: 726 DWAWEGKKTTESNYLNSKVSSHNSFHSLEVVVIESCSRLKDLTWVAFAPNLKALTIIDCD 785

Query: 288 RLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKC 347
           ++QE+I   K GE SAE  +NL  F +L+ L L+ L  LKSI    LPF  L  I V  C
Sbjct: 786 QMQEVIGTGKCGE-SAENGENLSPFVKLQVLELDDLPQLKSIFWKALPFIYLNTIYVDSC 844

Query: 348 AELKKLPLDCNQGLEQKIIIKGQDRWWNELQWDDQATQNA 387
             LKKLPL+ N     +I+I GQ  WWN+++W+D+ +Q  
Sbjct: 845 PLLKKLPLNANSAKGHRIVISGQTEWWNKVEWEDELSQGT 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.351	0.157	0.418	1.6e-35
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.351	0.155	0.415	8.7e-35
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.353	0.160	0.345	4.9e-32
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.345	0.154	0.442	6.3e-32
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.338	0.150	0.417	1.9e-31
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.325	0.145	0.382	6e-31
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.348	0.156	0.394	7.2e-31
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.363	0.188	0.452	2.1e-30
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.318	0.132	0.418	1.8e-29
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.335	0.148	0.425	2.5e-29

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 59/141 (41%), Positives = 80/141 (56%)

Query:     1 GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSN-HLGTVSNNFFHSM 59
             G  L   P++  WK ++RMSL+ N I+ +  +P CP L  LFL  N HL  +S  FF SM
Sbjct:   505 GFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTTLFLQDNRHLVNISGEFFRSM 564

Query:    60 ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
               L VL   +N +L  LP  I  LVSL++LDLS++ I  LP+ L  L  L  LNLE   C
Sbjct:   565 PRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRLPVGLLKLKKLMHLNLESMLC 624

Query:   120 LSRIPQ-PVISDLKMLRALRM 139
             L  +     +S+LK +R L +
Sbjct:   625 LESVSGIDHLSNLKTVRLLNL 645

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 8.7e-35, Sum P(2) = 8.7e-35
 Identities = 59/142 (41%), Positives = 80/142 (56%)

Query:     1 GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH-LGTVSNNFFHSM 59
             G GL   P++  W  + RMSLM+N I+ L+ +P C  L  LFL  N  L  +S+ FF  +
Sbjct:   503 GVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCI 562

Query:    60 ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
               L VL    N SL  LP  I  LVSL++LDLSWT I  LP+ L+ L  L+ L L+Y   
Sbjct:   563 PMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKR 622

Query:   120 LSRIPQPVISDLKMLRALRMFE 141
             L  I    IS++  LR L++ +
Sbjct:   623 LKSISG--ISNISSLRKLQLLQ 642

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 4.9e-32, Sum P(2) = 4.9e-32
 Identities = 49/142 (34%), Positives = 75/142 (52%)

Query:   246 RIRETRGFHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAE 304
             R+R    F +L+KV + N +  +  TWLV AP    + +     ++ IIS  +   +   
Sbjct:   727 RVRRDISFINLRKVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKT 786

Query:   305 V-MDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQ 363
               +  +I F  LE+L L  L  LKSI+   L F +LKEI +  C +L KLPLD     +Q
Sbjct:   787 CELAGVIPFRELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQ 846

Query:   364 KIIIKGQDRWWNELQWDDQATQ 385
              ++I  ++ W   LQW+D AT+
Sbjct:   847 NVVINAEEEWLQGLQWEDVATK 868

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 6.3e-32, Sum P(2) = 6.3e-32
 Identities = 62/140 (44%), Positives = 73/140 (52%)

Query:     1 GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH-LGTVSNNFFHSM 59
             G GL   P +  W+ + RMSLM N  + +  +P C  L  LFL +N+ L  +S  FF  M
Sbjct:   503 GIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCM 562

Query:    60 ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
              SL VL    N SL  LP  I  LVSLQ+LDLS T I  LP  L  L  L  L LE T  
Sbjct:   563 PSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRR 622

Query:   120 LSRIPQPVISDLKMLRALRM 139
             L  I    IS L  LR LR+
Sbjct:   623 LESISG--ISYLSSLRTLRL 640

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
 Identities = 58/139 (41%), Positives = 75/139 (53%)

Query:     1 GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH-LGTVSNNFFHSM 59
             G+GL   P++  W  + R+SLM N I+ ++ +P CP L  LFL  N  L  +S  FF  M
Sbjct:   501 GSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHM 560

Query:    60 ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
               L VL    N  L+ LP  I  LV+L++LDLS T I  LP  L+ L  L  LNLE   C
Sbjct:   561 RKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLE---C 617

Query:   120 LSRIPQPV-ISDLKMLRAL 137
             + R+     IS L  LR L
Sbjct:   618 MRRLGSIAGISKLSSLRTL 636

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 6.0e-31, Sum P(2) = 6.0e-31
 Identities = 52/136 (38%), Positives = 78/136 (57%)

Query:   253 FHSLQKVYI-NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLIL 311
             F +L +V+I      +  TWL+ AP    + +   + +++IIS EK  E SA ++     
Sbjct:   744 FSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSATIVP---- 799

Query:   312 FGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGL--EQKIIIKG 369
             F +LE L L  L+ LK I++  L FP LK I V KC +L+KLPLD   G+  E+ +I  G
Sbjct:   800 FRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYG 859

Query:   370 QDRWWNELQWDDQATQ 385
             +  W   ++W+DQATQ
Sbjct:   860 EREWIERVEWEDQATQ 875

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 7.2e-31, Sum P(2) = 7.2e-31
 Identities = 58/147 (39%), Positives = 80/147 (54%)

Query:     1 GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLG-------TVSN 53
             G G+   P+I  W  + RMSLM+N I +L  +  C  L  L L     G       T+S+
Sbjct:   502 GVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISS 561

Query:    54 NFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLN 113
              FF+ M  L VL   +N+SL  LP  I NLVSL++L+L +T I+ LP  ++ L  +  LN
Sbjct:   562 EFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLN 621

Query:   114 LEYTFCLSRIPQPVISDLKMLRALRMF 140
             LEYT  L  I    IS L  L+ L++F
Sbjct:   622 LEYTRKLESITG--ISSLHNLKVLKLF 646

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
 Identities = 67/148 (45%), Positives = 74/148 (50%)

Query:     3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASL 62
             GL   P    W  + RMSLM N I+ +T    C  L  LFL SN L  +S  F   M  L
Sbjct:   389 GLHERPEAKDWGAVRRMSLMDNHIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKL 448

Query:    63 RVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSR 122
              VL   YNR    LP  I  LVSLQ LDLS T I  LP+ LK L  L  LNL YT  L  
Sbjct:   449 VVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLTFLNLAYTVRLCS 508

Query:   123 IPQPVISDLKMLRALRMFECGFKVEQEA 150
             I    IS L  LR LR+   G KV  +A
Sbjct:   509 ISG--ISRLLSLRLLRLL--GSKVHGDA 532

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 54/129 (41%), Positives = 75/129 (58%)

Query:    13 WKEITRMSLMQNAIQNLTETPTCPHLRAL-FLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
             W+ I RMS+    IQN++++P C  L  L F  + HL  +S  FF  M  L VL   +NR
Sbjct:   496 WRMIRRMSVTSTQIQNISDSPQCSELTTLVFRRNRHLKWISGAFFQWMTGLVVLDLSFNR 555

Query:    72 SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
              L  LP  + +LV L+ L+LSWT I  LP+ LK L +L  L+L+YT  L  +   VI+ L
Sbjct:   556 ELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTSNLQEVD--VIASL 613

Query:   132 KMLRALRMF 140
               L+ LR+F
Sbjct:   614 LNLQVLRLF 622

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
 Identities = 57/134 (42%), Positives = 73/134 (54%)

Query:     3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASL 62
             GL    ++  W  + RMSLM+N I +L     C  L  L L S HL  +S+ FF+SM  L
Sbjct:   504 GLREILKVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKL 563

Query:    63 RVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL-S 121
              VL    N  L  LP GI  LVSLQ+L+LS TGI  LP  L+ L  L  L LE T  L S
Sbjct:   564 AVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGS 623

Query:   122 RIPQPVISDLKMLR 135
              +    + +LK+L+
Sbjct:   624 MVGISCLHNLKVLK 637

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIII000034 cc-nbs-lrr resistance protein (820 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	396
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWTG 95
          +L++L L +N L  + +  F  + +L+VL    N +L ++       L SL+ LDLS   
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 96 I 96
          +
Sbjct: 60 L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	396
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
KOG4341	483	consensus F-box protein containing LRR [General fu	99.23
KOG4341	483	consensus F-box protein containing LRR [General fu	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.74
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
PLN03150	623	hypothetical protein; Provisional	98.52
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.5
PLN03150	623	hypothetical protein; Provisional	98.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.33
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.3
smart00370	26	LRR Leucine-rich repeats, outliers.	89.48
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.48
smart00370	26	LRR Leucine-rich repeats, outliers.	88.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.85
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.87
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.09

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=7.8e-24  Score=221.96  Aligned_cols=323  Identities=22%  Similarity=0.182  Sum_probs=144.6

Q ss_pred             cCCCccccEEEcccccccc-ccCC--CCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCc
Q 044468           10 IGMWKEITRMSLMQNAIQN-LTET--PTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVS   85 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~   85 (396)
                      +..+++|+.|++++|.+.. +|..  ..+++|++|++++|.+. .+|.   ..+++|++|++++|...+.+|..++++++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCC
Confidence            4445555555555555543 4433  24555555555555442 2222   23455555555555222244444555555


Q ss_pred             CCEEEccCCCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHh
Q 044468           86 LQHLDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE  164 (396)
Q Consensus        86 L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (396)
                      |++|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|++|++.+|.+.+.             ....
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------------~p~~  231 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGE-------------IPYE  231 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCc-------------CChh
Confidence            555555555443 44555555555555555555444444444 55555555555555554431             3344


Q ss_pred             hhcCCCCcEEEEEecccch-hhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccc
Q 044468          165 LLALKHLNLLTVTLQIFGA-LQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGE  243 (396)
Q Consensus       165 l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~  243 (396)
                      +.++++|+.|++..+.... .+     ..+.++++|+.|.+.++.-... ....+..+++|+.|+++.+.+.........
T Consensus       232 l~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNLTGPIP-----SSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             HhcCCCCCEEECcCceeccccC-----hhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCeeccCCChhHc
Confidence            4555555555555444321 11     1233344455555544321111 111234445555555553333211000000


Q ss_pred             ---------------ccccccc-cccccCcEeEEeCceeec-CC-ccCCCCCccEEeeccccccceeecccccccchhcc
Q 044468          244 ---------------VKRIRET-RGFHSLQKVYINYSKFRH-AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEV  305 (396)
Q Consensus       244 ---------------~~~~~~~-~~~~~L~~L~l~~~~l~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  305 (396)
                                     .+.+|.. +.+++|+.|++.+|.++. ++ .++.+++|+.|+++++.....+.            
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p------------  373 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP------------  373 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC------------
Confidence                           0011111 133444444444443322 11 13334444444444433111111            


Q ss_pred             ccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEee
Q 044468          306 MDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKG  369 (396)
Q Consensus       306 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~  369 (396)
                       .....+++|+.|++.++.-...++.....+++|+.|++.+|.--..+|... ...+.++.+..
T Consensus       374 -~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L  435 (968)
T PLN00113        374 -EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDI  435 (968)
T ss_pred             -hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCCCCEEEC
Confidence             123344556666666554333444445567778888887775333444432 23345555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=1.1e-23  Score=220.85  Aligned_cols=322  Identities=19%  Similarity=0.184  Sum_probs=216.3

Q ss_pred             cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468           10 IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      +..+++|++|++++|.+.+......+++|++|++++|.+. .+|.. +..+++|++|++++|...+.+|..++++++|++
T Consensus       114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            3378899999999998876322356788999999998875 56666 888999999999988445577888888899999


Q ss_pred             EEccCCCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468           89 LDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA  167 (396)
Q Consensus        89 L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (396)
                      |++++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|++|++.+|.+.+.             ....+.+
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------------~p~~l~~  258 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP-------------IPSSLGN  258 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccc-------------cChhHhC
Confidence            999888776 67888888889999999888777777776 88888889888888877653             4445566


Q ss_pred             CCCCcEEEEEecccch-hh-hhhhc------------------cCCCCCcccceEEecccCCCcccchhhhhccccccce
Q 044468          168 LKHLNLLTVTLQIFGA-LQ-RLLNY------------------CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTL  227 (396)
Q Consensus       168 l~~L~~L~l~~~~~~~-~~-~~~~~------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  227 (396)
                      +++|+.|++..+.... .+ .+...                  ..+.++++|+.|++.++..... ....+..+++|+.|
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L  337 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-IPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-CChhHhcCCCCCEE
Confidence            6666666665554321 11 00000                  1122333444444444322111 11124445555555


Q ss_pred             eeeccccceeeeccccccccccc-cccccCcEeEEeCceeec-CC-ccCCCCCccEEeeccccccceeecccccccchhc
Q 044468          228 HLYFNDFEELNIDAGEVKRIRET-RGFHSLQKVYINYSKFRH-AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAE  304 (396)
Q Consensus       228 ~l~~~~i~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  304 (396)
                      +++.+.+.         +.+|.. +.+++|+.|++++|.++. ++ .+..+++|+.|+++++.....+..          
T Consensus       338 ~L~~n~l~---------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~----------  398 (968)
T PLN00113        338 QLWSNKFS---------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK----------  398 (968)
T ss_pred             ECcCCCCc---------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH----------
Confidence            55544443         223332 478999999999997665 33 366789999999998864333322          


Q ss_pred             cccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468          305 VMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ  370 (396)
Q Consensus       305 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~  370 (396)
                         ....+++|+.|++.+|.--..++.....+++|+.|++.++. +...++......+.++.+...
T Consensus       399 ---~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        399 ---SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             ---HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccChhhccCCCCcEEECc
Confidence               45678999999999996444566667789999999999885 554433333334666666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=4.8e-25  Score=201.85  Aligned_cols=311  Identities=18%  Similarity=0.193  Sum_probs=159.2

Q ss_pred             cCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCC
Q 044468           10 IGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQ   87 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~   87 (396)
                      |.++++|+.+++..|.++.+|.. ....+|+.|++.+|.|.++..+.++-++.||.||++.| .+..+| ..+..-.+++
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK  176 (873)
T ss_pred             HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence            44555566666666655555555 44455666666666555555444555566666666666 555444 2333445566


Q ss_pred             EEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh
Q 044468           88 HLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL  166 (396)
Q Consensus        88 ~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (396)
                      +|+|++|.|+.+-.+ +..+.+|..|.+++| .+..+|..+|.+++.|+.|++..|.+.-.             ....+.
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv-------------e~ltFq  242 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV-------------EGLTFQ  242 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee-------------hhhhhc
Confidence            666666666544332 455556666666665 44455555455566666666666655432             233444


Q ss_pred             cCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccc
Q 044468          167 ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKR  246 (396)
Q Consensus       167 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~  246 (396)
                      +++.|+.|.+..++...+++    ..+-.+.++++|++..+ .+.......+-++..|+.|+++.|.|+.+.++.    |
T Consensus       243 gL~Sl~nlklqrN~I~kL~D----G~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~----W  313 (873)
T KOG4194|consen  243 GLPSLQNLKLQRNDISKLDD----GAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS----W  313 (873)
T ss_pred             CchhhhhhhhhhcCcccccC----cceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecch----h
Confidence            55555555555555444332    22333344555555442 122222122445566666666666666554421    1


Q ss_pred             cccccccccCcEeEEeCceeecCCc--------------------------cCCCCCccEEeeccccccceeeccccccc
Q 044468          247 IRETRGFHSLQKVYINYSKFRHATW--------------------------LVLAPRAKVIRISNCQRLQEIISMEKLGE  300 (396)
Q Consensus       247 ~~~~~~~~~L~~L~l~~~~l~~l~~--------------------------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  300 (396)
                          ..+++|+.|++++|+++.++.                          +.++.+|+.|+++.+. +...+. +  + 
T Consensus       314 ----sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IE-D--a-  384 (873)
T KOG4194|consen  314 ----SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIE-D--A-  384 (873)
T ss_pred             ----hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEe-c--c-
Confidence                145666666666665555432                          2234555555555443 222221 1  0 


Q ss_pred             chhccccccccccCcceeeccCCcccccccCC-CCCCCCcceEEeccCcccccCCCCCCCC
Q 044468          301 ISAEVMDNLILFGRLEYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCAELKKLPLDCNQG  360 (396)
Q Consensus       301 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~~  360 (396)
                           +....++++|+.|.+.|+ +++.++-. ...++.|++|++.+.+ +.++-+..+..
T Consensus       385 -----a~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~  438 (873)
T KOG4194|consen  385 -----AVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEP  438 (873)
T ss_pred             -----hhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceeeccccccc
Confidence                 013344666666666665 46655543 2235666666665543 44444444433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.2e-24  Score=199.29  Aligned_cols=299  Identities=24%  Similarity=0.259  Sum_probs=205.2

Q ss_pred             CCCCCccCCCc-cccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-cc
Q 044468            4 LTGAPRIGMWK-EITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LG   79 (396)
Q Consensus         4 l~~~~~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~   79 (396)
                      +..+|.++... +++.|++.+|-|+++.+.  ..++.|++|+++.|.+.+++...|..=.++++|+++.| .++.+. ..
T Consensus       114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~  192 (873)
T KOG4194|consen  114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGH  192 (873)
T ss_pred             hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-ccccccccc
Confidence            45678887765 499999999999987665  78999999999999998887665777788999999999 777554 45


Q ss_pred             ccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCC-CcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           80 ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRI-PQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~-~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      |.++.+|..|.|++|.++.+|.. +.++++|+.|++..|+ +..+ ... |..+++|+.|.+..|.+...          
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~lt-FqgL~Sl~nlklqrN~I~kL----------  260 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLT-FQGLPSLQNLKLQRNDISKL----------  260 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhh-hcCchhhhhhhhhhcCcccc----------
Confidence            77888999999999999999876 6679999999999983 4333 233 77889999999988887765          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc-----------------------CCCcccc
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL-----------------------NNSNLLS  214 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------------~~~~~~~  214 (396)
                         ...++-.+.+++.|++..+.......    ..+-+++.|+.|+++.+                       +.++..+
T Consensus       261 ---~DG~Fy~l~kme~l~L~~N~l~~vn~----g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  261 ---DDGAFYGLEKMEHLNLETNRLQAVNE----GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             ---cCcceeeecccceeecccchhhhhhc----ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence               33445555556666666555543322    33344444555554432                       2223333


Q ss_pred             hhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceee----c-CCccCCCCCccEEeecccccc
Q 044468          215 AFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFR----H-ATWLVLAPRAKVIRISNCQRL  289 (396)
Q Consensus       215 ~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~----~-l~~l~~l~~L~~L~l~~~~~l  289 (396)
                      ...+..+..|++|+++.|.++.+.....        .++++|++|++..|.+.    + -..+.++++|+.|++.++. +
T Consensus       334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af--------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-l  404 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHNSIDHLAEGAF--------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-L  404 (873)
T ss_pred             hhHHHHHHHhhhhcccccchHHHHhhHH--------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-e
Confidence            3334444555555555554444333211        16789999999988333    3 2346679999999999875 7


Q ss_pred             ceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEe
Q 044468          290 QEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICV  344 (396)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i  344 (396)
                      ..+...            ...++++|+.|++.++. +.++-.....-..|++|.+
T Consensus       405 k~I~kr------------Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~  446 (873)
T KOG4194|consen  405 KSIPKR------------AFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVM  446 (873)
T ss_pred             eecchh------------hhccCcccceecCCCCc-ceeecccccccchhhhhhh
Confidence            777553            34569999999998875 4444433332226666654

>PLN03210 Resistant to P

Probab=99.89  E-value=3.6e-22  Score=210.28  Aligned_cols=306  Identities=19%  Similarity=0.248  Sum_probs=186.9

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      +||.|.+.++.+..+|......+|+.|++.++.+..++.+ +..+++|++|+++++..++.+|. ++.+++|++|++++|
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC  667 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence            4666666666666676665567888888888888877777 67888899999988766677764 778888999999887


Q ss_pred             -CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           95 -GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        95 -~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                       .+..+|..+.++++|+.|++++|.....+|.. + ++++|+.|.+.+|.....             ...   ...+|+.
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~-------------~p~---~~~nL~~  729 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKS-------------FPD---ISTNISW  729 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccc-------------ccc---ccCCcCe
Confidence             56788888888899999999888777788875 3 788888888888754321             111   1245666


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcc------cchhhhhccccccceeeec-cccceeeeccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNL------LSAFSFASLRHLWTLHLYF-NDFEELNIDAGEVKR  246 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~l~~~~~L~~L~l~~-~~i~~l~~~~~~~~~  246 (396)
                      |++..+....++...      .+++|+.|.+.++.....      ........+++|+.|+++. ..+..+....     
T Consensus       730 L~L~~n~i~~lP~~~------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si-----  798 (1153)
T PLN03210        730 LDLDETAIEEFPSNL------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI-----  798 (1153)
T ss_pred             eecCCCccccccccc------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh-----
Confidence            666666554433211      122344444433211000      0000011123455555542 2222111110     


Q ss_pred             cccccccccCcEeEEeCc-eeecCCccCCCCCccEEeeccccccceeeccc-------ccccchhccccccccccCccee
Q 044468          247 IRETRGFHSLQKVYINYS-KFRHATWLVLAPRAKVIRISNCQRLQEIISME-------KLGEISAEVMDNLILFGRLEYL  318 (396)
Q Consensus       247 ~~~~~~~~~L~~L~l~~~-~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~L  318 (396)
                          +.+++|+.|++.+| .++.+|....+++|++|++++|..+..++...       ..++....++..+..+++|+.|
T Consensus       799 ----~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L  874 (1153)
T PLN03210        799 ----QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFL  874 (1153)
T ss_pred             ----hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEE
Confidence                14455555555555 44444443345555555555554433321100       0000000122256778999999


Q ss_pred             eccCCcccccccCCCCCCCCcceEEeccCcccccCCC
Q 044468          319 ILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL  355 (396)
Q Consensus       319 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~  355 (396)
                      ++.+|.++..++.....+++|+.+++.+|+.|+.++.
T Consensus       875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             ECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence            9999999999888888889999999999998886654

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=2.9e-25  Score=204.90  Aligned_cols=330  Identities=20%  Similarity=0.275  Sum_probs=226.6

Q ss_pred             CCCCCC-ccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCcc--CccChHHHhcCccccEEEeecCCCCccccc
Q 044468            3 GLTGAP-RIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHL--GTVSNNFFHSMASLRVLIFLYNRSLENLPL   78 (396)
Q Consensus         3 ~l~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~   78 (396)
                      ++.++| .++.+.+|.+|++.+|++.++... ..++.||.+.+..|.+  +.+|.. +-++..|..||+++| .+...|.
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~  120 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPT  120 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-hhhhcch
Confidence            344454 456677888889998888886666 8888999988888877  467877 778889999999998 8888888


Q ss_pred             cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           79 GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .+.+.+++-+|++++|+|..+|.. +.++.-|-+||+++| .+..+|.. ++.+.+|++|.+++|.+...          
T Consensus       121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf----------  188 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHF----------  188 (1255)
T ss_pred             hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHH----------
Confidence            888888999999999999888876 457888889999887 66677776 88888999999998887763          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL  237 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l  237 (396)
                         -+..++.+..|+.|.+++....-. .+  .+.+-.+++|+.++++..+ +...+ ..+-++++|++|+++.|+|+.+
T Consensus       189 ---QLrQLPsmtsL~vLhms~TqRTl~-N~--Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNLS~N~iteL  260 (1255)
T KOG0444|consen  189 ---QLRQLPSMTSLSVLHMSNTQRTLD-NI--PTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNLSGNKITEL  260 (1255)
T ss_pred             ---HHhcCccchhhhhhhcccccchhh-cC--CCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheeccCcCceeee
Confidence               566677777777777665443211 00  0223334446666665432 22221 1245566777777777777665


Q ss_pred             eeccccc-------------cccccc-cccccCcEeEEeCc--eeecCCc-cCCCCCccEEeeccccccceeeccccccc
Q 044468          238 NIDAGEV-------------KRIRET-RGFHSLQKVYINYS--KFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGE  300 (396)
Q Consensus       238 ~~~~~~~-------------~~~~~~-~~~~~L~~L~l~~~--~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  300 (396)
                      ..+....             ..+|.. +.+++|+.|++.+|  .+..+|+ +|++..|+.+...++. ++-++.      
T Consensus       261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE------  333 (1255)
T KOG0444|consen  261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE------  333 (1255)
T ss_pred             eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCch------
Confidence            5432210             123333 45667777777666  4445554 6667777777666543 333332      


Q ss_pred             chhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468          301 ISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ  370 (396)
Q Consensus       301 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~  370 (396)
                             ++..|++|+.|.+..+ .+-.+|..+..++.|+.|++.+.|+|. +|+.+.-..+.+.--+.+
T Consensus       334 -------glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLV-MPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  334 -------GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLV-MPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             -------hhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCcc-CCCCcchhhhcceeeecc
Confidence                   6778899999998654 677888888889999999999988876 455444443455444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.88  E-value=5.7e-23  Score=206.48  Aligned_cols=366  Identities=33%  Similarity=0.456  Sum_probs=271.5

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCc--cCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH--LGTVSNNFFHSMASLRVLIFLYNRSLENLPLG   79 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~   79 (396)
                      +|+...|....+..+|++++.++.+..++....++.|++|-+..+.  +..++..+|..++.|++||+++|....++|..
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence            5677788888899999999999999998888788899999999985  67888888999999999999999888999999


Q ss_pred             ccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCch
Q 044468           80 ILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSE  159 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  159 (396)
                      ++.+.+|++|+++++.+..+|.+++++++|.+|++..+.....++. +...+.+||+|.+.......           +.
T Consensus       591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~-----------~~  658 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSN-----------DK  658 (889)
T ss_pred             HhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccccc-----------ch
Confidence            9999999999999999999999999999999999998866666644 36679999999998775322           23


Q ss_pred             hhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeee
Q 044468          160 VLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI  239 (396)
Q Consensus       160 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~  239 (396)
                      .....+.++++|+.+............+..+..+..+  .+.+.+.++..  ......+..+.+|+.|.+....+.+...
T Consensus       659 ~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~--~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~  734 (889)
T KOG4658|consen  659 LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSL--LQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVI  734 (889)
T ss_pred             hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHH--hHhhhhccccc--ceeecccccccCcceEEEEcCCCchhhc
Confidence            4677778888888777755544333333333333333  33444332221  1122346788999999999444433322


Q ss_pred             ccccccccccccccccCcEeEEeCc-eeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCccee
Q 044468          240 DAGEVKRIRETRGFHSLQKVYINYS-KFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYL  318 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  318 (396)
                      .....+... . .|+++..+.+.+| ..+++.+..-.|+|+.|.+..|..+++++.....-.   ........|+++..+
T Consensus       735 ~~~~~~~~~-~-~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~---~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  735 EWEESLIVL-L-CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL---ELKELILPFNKLEGL  809 (889)
T ss_pred             ccccccchh-h-hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh---hcccEEecccccccc
Confidence            111100000 0 2778888888899 888888877789999999999999888866332211   111134667777777


Q ss_pred             -eccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCc--eEE-eehHHHHHhhcCCcHHHHHhh
Q 044468          319 -ILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQK--III-KGQDRWWNELQWDDQATQNAS  388 (396)
Q Consensus       319 -~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l--~~~-~~~~~~~~~~~~~~~~~~~~~  388 (396)
                       .+.+.+.+..+......++.|+.+.+..||++..+|..........  ... ..+..|.+.++|++++++..+
T Consensus       810 ~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  810 RMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF  883 (889)
T ss_pred             eeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence             4777777777766666788899999999999999999766554332  223 355789999999999998877

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=1.1e-24  Score=201.16  Aligned_cols=275  Identities=23%  Similarity=0.240  Sum_probs=163.3

Q ss_pred             ccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCC
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ   87 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~   87 (396)
                      .+.+++.|+.|+++.|++...|.. ...+++-+|++++|.|+.||...+-++..|-+||+++| .+..+|+.+..+.+|+
T Consensus        98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lq  176 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQ  176 (1255)
T ss_pred             hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhh
Confidence            344455555555555555555544 55555555555555555555555555555555555555 5555555555555555


Q ss_pred             EEEccCCCCCcc-chhhhcCCcccEEecccccC-CCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhh
Q 044468           88 HLDLSWTGITTL-PIELKYLVNLKCLNLEYTFC-LSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEEL  165 (396)
Q Consensus        88 ~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~-~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (396)
                      +|++++|.+... ...+..|.+|++|+++++.. ...+|.. +..+.+|+.++++.|.+..              .+..+
T Consensus       177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~--------------vPecl  241 (1255)
T KOG0444|consen  177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPI--------------VPECL  241 (1255)
T ss_pred             hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCc--------------chHHH
Confidence            555555544311 11233445555555555422 2334544 5555555555555555443              56666


Q ss_pred             hcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccc
Q 044468          166 LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK  245 (396)
Q Consensus       166 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~  245 (396)
                      -++++|+.|.++++.+..+...     .....+|+.|+++... ++..+ +++.+++.|+.|.+..|+++=.+       
T Consensus       242 y~l~~LrrLNLS~N~iteL~~~-----~~~W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~NkL~FeG-------  307 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKITELNMT-----EGEWENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNNKLTFEG-------  307 (1255)
T ss_pred             hhhhhhheeccCcCceeeeecc-----HHHHhhhhhhccccch-hccch-HHHhhhHHHHHHHhccCcccccC-------
Confidence            6677777777777766543321     1112336667776532 22222 34667778888877766654222       


Q ss_pred             ccccc-cccccCcEeEEeCceeecCC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468          246 RIRET-RGFHSLQKVYINYSKFRHAT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL  323 (396)
Q Consensus       246 ~~~~~-~~~~~L~~L~l~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  323 (396)
                       +|.. |.+.+|+.+...+|.+.-+| .++.|+.|+.|.+..+. +-.++.             .++.++.|+.|++..+
T Consensus       308 -iPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPe-------------aIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  308 -IPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPE-------------AIHLLPDLKVLDLREN  372 (1255)
T ss_pred             -CccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechh-------------hhhhcCCcceeeccCC
Confidence             3433 57888999988998777665 47889999999997654 555544             8889999999999999


Q ss_pred             ccccc
Q 044468          324 QNLKS  328 (396)
Q Consensus       324 ~~l~~  328 (396)
                      +++--
T Consensus       373 pnLVM  377 (1255)
T KOG0444|consen  373 PNLVM  377 (1255)
T ss_pred             cCccC
Confidence            98753

>PLN03210 Resistant to P

Probab=99.85  E-value=2.9e-20  Score=195.95  Aligned_cols=310  Identities=17%  Similarity=0.169  Sum_probs=204.4

Q ss_pred             CCCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCC-ccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468            4 LTGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus         4 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      ++.+|..-...+|+.|++.++.+..++.. ..+++|+.|+++++ .+..+|.  +..+++|++|++++|..+..+|..++
T Consensus       601 l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~  678 (1153)
T PLN03210        601 LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQ  678 (1153)
T ss_pred             CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhh
Confidence            34455444567999999999999998877 88999999999987 4677775  78899999999999978889999999


Q ss_pred             CCCcCCEEEccCC-CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchh-------
Q 044468           82 NLVSLQHLDLSWT-GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRI-------  153 (396)
Q Consensus        82 ~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~-------  153 (396)
                      ++++|++|++++| .++.+|..+ ++++|++|++++|.....+|.    ..++|++|++.++.+...+.....       
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~  753 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDELI  753 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccccccccccccccc
Confidence            9999999999998 678888765 789999999999976666654    246788999988876543110000       


Q ss_pred             -ccCC--------chhhhHhhhcCCCCcEEEEEeccc-chhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcccc
Q 044468          154 -LFGD--------SEVLVEELLALKHLNLLTVTLQIF-GALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRH  223 (396)
Q Consensus       154 -~~~~--------~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  223 (396)
                       ....        ...........+.|+.|++.++.. ..++     ..+.++++|+.|++.+|......+.  ..++++
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-----~si~~L~~L~~L~Ls~C~~L~~LP~--~~~L~s  826 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-----SSIQNLHKLEHLEIENCINLETLPT--GINLES  826 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccC-----hhhhCCCCCCEEECCCCCCcCeeCC--CCCccc
Confidence             0000        000000000112344444433221 1111     1233444555555555544333221  113455


Q ss_pred             ccceeee-ccccceeeeccccccccccccccccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccc
Q 044468          224 LWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEI  301 (396)
Q Consensus       224 L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  301 (396)
                      |+.|+++ |..+..+          |.  ...+|++|++.++.++.+|. +..+++|+.|++.+|..+..+..       
T Consensus       827 L~~L~Ls~c~~L~~~----------p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~-------  887 (1153)
T PLN03210        827 LESLDLSGCSRLRTF----------PD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL-------  887 (1153)
T ss_pred             cCEEECCCCCccccc----------cc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc-------
Confidence            5555555 3333321          11  34567778877777777664 67789999999999998887754       


Q ss_pred             hhccccccccccCcceeeccCCcccccccCCC-------------CCCCCcceEEeccCccccc
Q 044468          302 SAEVMDNLILFGRLEYLILEGLQNLKSIHSSY-------------LPFPRLKEICVWKCAELKK  352 (396)
Q Consensus       302 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------------~~~~~L~~L~i~~c~~L~~  352 (396)
                            ....+++|+.+++.+|..+..++...             ..+|....+.+.+|.+|..
T Consensus       888 ------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~  945 (1153)
T PLN03210        888 ------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ  945 (1153)
T ss_pred             ------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence                  45678999999999999887654321             2345556677888887764

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=1.2e-19  Score=159.86  Aligned_cols=306  Identities=19%  Similarity=0.224  Sum_probs=192.1

Q ss_pred             CCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc-CCCcCCEE
Q 044468           12 MWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHL   89 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~L   89 (396)
                      .|+.|++++...|.+..+|.. ..+..|..|++..|++..+|.  |..|..|+.|.++.| .+..+|...+ .++++.+|
T Consensus       181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhccc-HHHhhHHHHhcccccceee
Confidence            377778888888877777777 777777778888888777774  778888888888877 7777776555 77788888


Q ss_pred             EccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchh---cc----------------
Q 044468           90 DLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQ---EA----------------  150 (396)
Q Consensus        90 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~---~~----------------  150 (396)
                      |++.|+++++|..++.+++|.+||+++| -+..+|.. ++++ .|+.|.+.||.+..+.   ++                
T Consensus       258 DLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~  334 (565)
T KOG0472|consen  258 DLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD  334 (565)
T ss_pred             eccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence            8888888888888877888888888776 55566666 7777 7777777777665430   00                


Q ss_pred             chh---------ccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccC-------------
Q 044468          151 DRI---------LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN-------------  208 (396)
Q Consensus       151 ~~~---------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------  208 (396)
                      +++         ..+...........+.+.++|++++-....+++......-.+.  .+..+++...             
T Consensus       335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~--Vt~VnfskNqL~elPk~L~~lke  412 (565)
T KOG0472|consen  335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI--VTSVNFSKNQLCELPKRLVELKE  412 (565)
T ss_pred             CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc--eEEEecccchHhhhhhhhHHHHH
Confidence            001         0011122233444556667777766665554443322111111  2233332211             


Q ss_pred             ---------CCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCccCC-CCCc
Q 044468          209 ---------NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVL-APRA  278 (396)
Q Consensus       209 ---------~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~-l~~L  278 (396)
                               .........+..+++|..|++++|-+.++..+..         ++..|+.|+++.|+++.+|-..+ +..|
T Consensus       413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~---------~lv~Lq~LnlS~NrFr~lP~~~y~lq~l  483 (565)
T KOG0472|consen  413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMG---------SLVRLQTLNLSFNRFRMLPECLYELQTL  483 (565)
T ss_pred             HHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhh---------hhhhhheecccccccccchHHHhhHHHH
Confidence                     1111111235556666666666666665554433         45567777777776666554333 3333


Q ss_pred             cEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCc
Q 044468          279 KVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCA  348 (396)
Q Consensus       279 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  348 (396)
                      +.+-.+++ ++..+..            +++..+.+|..|++.+. .+..+|...+.+.+|++|+++|.|
T Consensus       484 Etllas~n-qi~~vd~------------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  484 ETLLASNN-QIGSVDP------------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             HHHHhccc-cccccCh------------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence            43333332 2333322            25778999999999876 699999999999999999999876

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.68  E-value=1.4e-19  Score=159.34  Aligned_cols=251  Identities=22%  Similarity=0.255  Sum_probs=121.7

Q ss_pred             ccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      +..+++++|++..+... .++..|.+|.+.++++..+|++ ++.+..++.++.+++ .+..+|+.++.+.+|.+++.+++
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc
Confidence            44455555555554333 5555555666665555555555 555555555555555 55555555555555555555555


Q ss_pred             CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccc-h------h--ccCCchhhhHhh
Q 044468           95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEAD-R------I--LFGDSEVLVEEL  165 (396)
Q Consensus        95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~-~------~--~~~~~~~~~~~l  165 (396)
                      .+.++|..++.+-.|..++..+| .+...|.+ +..+.++..+.+.++.+...+... .      +  ....-+..+..+
T Consensus       125 ~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l  202 (565)
T KOG0472|consen  125 ELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL  202 (565)
T ss_pred             ceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence            55555555555555555555554 34444444 455555555555555444310000 0      0  000000134444


Q ss_pred             hcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccc
Q 044468          166 LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK  245 (396)
Q Consensus       166 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~  245 (396)
                      +.+..|+.|++..+....++      .++.|..|..|.++... ....+......++++..|++..|+++.+..+..   
T Consensus       203 g~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c---  272 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC---  272 (565)
T ss_pred             cchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHH---
Confidence            55555555555444443332      23444445555554321 111111123345555555555555554433221   


Q ss_pred             ccccccccccCcEeEEeCceeecCCc-cCCCCCccEEeecccc
Q 044468          246 RIRETRGFHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       246 ~~~~~~~~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~  287 (396)
                            -+++|++|++++|.++.+|. ++++ .|+.|.+.+++
T Consensus       273 ------lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  273 ------LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ------HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence                  45556666666665555554 4445 56666555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=2.2e-18  Score=166.33  Aligned_cols=104  Identities=18%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             ccccCcEeEEeCceeecCCc--cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc
Q 044468          252 GFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI  329 (396)
Q Consensus       252 ~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  329 (396)
                      .+++|+.|.+++|++..+|.  +.+++.|++|.++++. ++.+..             .+..++.|++|...++ .+..+
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~-------------tva~~~~L~tL~ahsN-~l~~f  445 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPD-------------TVANLGRLHTLRAHSN-QLLSF  445 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhH-------------HHHhhhhhHHHhhcCC-ceeec
Confidence            44555555555555554443  3345555555555543 444432             3445555555555443 34444


Q ss_pred             cCCCCCCCCcceEEeccCccccc--CCCCCCCCCCCceEEeehHHHH
Q 044468          330 HSSYLPFPRLKEICVWKCAELKK--LPLDCNQGLEQKIIIKGQDRWW  374 (396)
Q Consensus       330 ~~~~~~~~~L~~L~i~~c~~L~~--lp~~~~~~~~~l~~~~~~~~~~  374 (396)
                      | ....++.|+.++++ |.+|+.  +|...++  ++|+..+...+.|
T Consensus       446 P-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~--p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  446 P-ELAQLPQLKVLDLS-CNNLSEVTLPEALPS--PNLKYLDLSGNTR  488 (1081)
T ss_pred             h-hhhhcCcceEEecc-cchhhhhhhhhhCCC--cccceeeccCCcc
Confidence            5 44456778888874 566765  3332222  5777777666655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.6e-18  Score=134.61  Aligned_cols=163  Identities=24%  Similarity=0.355  Sum_probs=145.7

Q ss_pred             CCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCC
Q 044468            5 TGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNL   83 (396)
Q Consensus         5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l   83 (396)
                      .+++.+.+++++++|.+++|.++.+|.. ..+++|++|++.+|.++++|.+ ++++++|+.|+++-| .+..+|..++.+
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~  101 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSF  101 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCC
Confidence            3456677788999999999999998887 9999999999999999999998 999999999999999 888999999999


Q ss_pred             CcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468           84 VSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL  161 (396)
Q Consensus        84 ~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  161 (396)
                      +.|++||+.+|++.  .+|..+-.+..|+.|+++.| -..-+|.+ ++++++|+.|.+..|.+..              .
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~--------------l  165 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS--------------L  165 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh--------------C
Confidence            99999999999887  78888889999999999997 55667887 9999999999999998775              6


Q ss_pred             hHhhhcCCCCcEEEEEecccchhh
Q 044468          162 VEELLALKHLNLLTVTLQIFGALQ  185 (396)
Q Consensus       162 ~~~l~~l~~L~~L~l~~~~~~~~~  185 (396)
                      +.+++.+..|+.|.++++....++
T Consensus       166 pkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             cHHHHHHHHHHHHhcccceeeecC
Confidence            778888888999999999887655

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=1.1e-17  Score=161.66  Aligned_cols=295  Identities=22%  Similarity=0.193  Sum_probs=160.5

Q ss_pred             CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEc
Q 044468           12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDL   91 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l   91 (396)
                      ++++++.+....|++..+.  -.-++|+.|...+|.+..+..  ...-.+|++++++.+ .+..+|++++.+.+|+.+++
T Consensus       197 ~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~  271 (1081)
T KOG0618|consen  197 NLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNA  271 (1081)
T ss_pred             hccchhhhhhhhcccceEE--ecCcchheeeeccCcceeecc--ccccccceeeecchh-hhhcchHHHHhcccceEecc
Confidence            3444555555555444332  123445555555554432211  112234555555555 55555555555555555555


Q ss_pred             cCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch-hccC----------Cchh
Q 044468           92 SWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR-ILFG----------DSEV  160 (396)
Q Consensus        92 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~~~----------~~~~  160 (396)
                      .+|.+..+|..+..+.+|+.|.+..| ....+|.. .+..++|++|++..|.+...+.... +...          ..+.
T Consensus       272 n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~  349 (1081)
T KOG0618|consen  272 NHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST  349 (1081)
T ss_pred             cchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence            55555555555555555555555554 33444442 3345555555555554443210000 0000          0000


Q ss_pred             -hhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeee
Q 044468          161 -LVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI  239 (396)
Q Consensus       161 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~  239 (396)
                       --..=..++.|+.|.+.++....-.    .+.+.+.++|+.|+++.+ .+...+.+.+.++..|++|+++.|+++.+..
T Consensus       350 lp~~~e~~~~~Lq~LylanN~Ltd~c----~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~  424 (1081)
T KOG0618|consen  350 LPSYEENNHAALQELYLANNHLTDSC----FPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPD  424 (1081)
T ss_pred             cccccchhhHHHHHHHHhcCcccccc----hhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhH
Confidence             0000011233444555555543211    133455666888888763 3444454567888888999999888887764


Q ss_pred             ccccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccc-cCccee
Q 044468          240 DAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF-GRLEYL  318 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L  318 (396)
                      +..         .++.|++|...+|.+..+|-+..++.|+.+|++.+ +++++....             ... |+|++|
T Consensus       425 tva---------~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~-------------~~p~p~LkyL  481 (1081)
T KOG0618|consen  425 TVA---------NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPE-------------ALPSPNLKYL  481 (1081)
T ss_pred             HHH---------hhhhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhh-------------hCCCccccee
Confidence            332         68889999888888888888888999999999854 577764411             222 899999


Q ss_pred             eccCCcccccccCCCCCCCCcceEEe
Q 044468          319 ILEGLQNLKSIHSSYLPFPRLKEICV  344 (396)
Q Consensus       319 ~l~~~~~l~~~~~~~~~~~~L~~L~i  344 (396)
                      +++|+.++   -.+...++.++.+..
T Consensus       482 dlSGN~~l---~~d~~~l~~l~~l~~  504 (1081)
T KOG0618|consen  482 DLSGNTRL---VFDHKTLKVLKSLSQ  504 (1081)
T ss_pred             eccCCccc---ccchhhhHHhhhhhh
Confidence            99998752   222334455544443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=1e-14  Score=144.41  Aligned_cols=255  Identities=18%  Similarity=0.146  Sum_probs=141.8

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      +-..|+++++.++.+|.. -.++|+.|.+.+|.+..+|.    ..++|++|++++| .++.+|..   .++|+.|++++|
T Consensus       202 ~~~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCcEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence            445677777777777664 12367777777777776664    2467777777777 66666642   356777777777


Q ss_pred             CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468           95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL  174 (396)
Q Consensus        95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  174 (396)
                      .++.+|..   ..+|+.|++.+| .+..+|.    ..++|+.|++++|.+...           +.    +  ...|+.|
T Consensus       273 ~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~L-----------p~----l--p~~L~~L  327 (788)
T PRK15387        273 PLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASL-----------PA----L--PSELCKL  327 (788)
T ss_pred             chhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCccccC-----------CC----C--ccccccc
Confidence            77666642   245667777776 3444553    235677777777766542           00    0  1234445


Q ss_pred             EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccc
Q 044468          175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH  254 (396)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~  254 (396)
                      .+..+.+..++.+      .  .+|+.|+++++. +...+  .  ..++|+.|+++.|.+..+.          .  ...
T Consensus       328 ~Ls~N~L~~LP~l------p--~~Lq~LdLS~N~-Ls~LP--~--lp~~L~~L~Ls~N~L~~LP----------~--l~~  382 (788)
T PRK15387        328 WAYNNQLTSLPTL------P--SGLQELSVSDNQ-LASLP--T--LPSELYKLWAYNNRLTSLP----------A--LPS  382 (788)
T ss_pred             ccccCcccccccc------c--cccceEecCCCc-cCCCC--C--CCcccceehhhccccccCc----------c--ccc
Confidence            5555554433321      1  136666666532 22211  0  1245566666655554322          1  234


Q ss_pred             cCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCC
Q 044468          255 SLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYL  334 (396)
Q Consensus       255 ~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  334 (396)
                      +|+.|++++|.++.++..  .++|+.|+++++. ++.++.                .+.+|+.|+++++ .++.+|....
T Consensus       383 ~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~-LssIP~----------------l~~~L~~L~Ls~N-qLt~LP~sl~  442 (788)
T PRK15387        383 GLKELIVSGNRLTSLPVL--PSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYRN-QLTRLPESLI  442 (788)
T ss_pred             ccceEEecCCcccCCCCc--ccCCCEEEccCCc-CCCCCc----------------chhhhhhhhhccC-cccccChHHh
Confidence            566666666666655543  2456666666654 343321                1335566666654 3555555555


Q ss_pred             CCCCcceEEeccCc
Q 044468          335 PFPRLKEICVWKCA  348 (396)
Q Consensus       335 ~~~~L~~L~i~~c~  348 (396)
                      .+++|+.|++.+++
T Consensus       443 ~L~~L~~LdLs~N~  456 (788)
T PRK15387        443 HLSSETTVNLEGNP  456 (788)
T ss_pred             hccCCCeEECCCCC
Confidence            56666666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.55  E-value=3.7e-14  Score=140.53  Aligned_cols=245  Identities=22%  Similarity=0.197  Sum_probs=179.3

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN   82 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~   82 (396)
                      +++.+|. .-.++++.|++.+|.++.+|.  ..++|++|++++|.+..+|..    .++|+.|++++| .+..+|..   
T Consensus       212 ~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~l---  280 (788)
T PRK15387        212 GLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPAL---  280 (788)
T ss_pred             CCCcCCc-chhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhc---
Confidence            4556654 113479999999999998875  468999999999999888752    468999999999 77777753   


Q ss_pred             CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468           83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV  162 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  162 (396)
                      ..+|+.|++++|.++.+|..   .++|++|++++| .+..+|..    ..+|+.|.+.+|.+...              .
T Consensus       281 p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~L--------------P  338 (788)
T PRK15387        281 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL--------------P  338 (788)
T ss_pred             hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccccc--------------c
Confidence            36788999999999988863   478999999998 44556542    24578888888887653              1


Q ss_pred             HhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccc
Q 044468          163 EELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAG  242 (396)
Q Consensus       163 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~  242 (396)
                       .+  ...|+.|+++.+.+..++..        .++|+.|++.++. +....    ....+|+.|+++.|.++.+..   
T Consensus       339 -~l--p~~Lq~LdLS~N~Ls~LP~l--------p~~L~~L~Ls~N~-L~~LP----~l~~~L~~LdLs~N~Lt~LP~---  399 (788)
T PRK15387        339 -TL--PSGLQELSVSDNQLASLPTL--------PSELYKLWAYNNR-LTSLP----ALPSGLKELIVSGNRLTSLPV---  399 (788)
T ss_pred             -cc--ccccceEecCCCccCCCCCC--------Ccccceehhhccc-cccCc----ccccccceEEecCCcccCCCC---
Confidence             11  14788999999887765532        1237778777643 22211    123579999999888774331   


Q ss_pred             cccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccC
Q 044468          243 EVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEG  322 (396)
Q Consensus       243 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  322 (396)
                               ..++|+.|++++|.++.+|.+  ..+|+.|+++++. ++.++.             .+..+++|+.|++++
T Consensus       400 ---------l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~-------------sl~~L~~L~~LdLs~  454 (788)
T PRK15387        400 ---------LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQ-LTRLPE-------------SLIHLSSETTVNLEG  454 (788)
T ss_pred             ---------cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCc-ccccCh-------------HHhhccCCCeEECCC
Confidence                     357899999999988887754  4578899998875 666643             556789999999999


Q ss_pred             Cc
Q 044468          323 LQ  324 (396)
Q Consensus       323 ~~  324 (396)
                      ++
T Consensus       455 N~  456 (788)
T PRK15387        455 NP  456 (788)
T ss_pred             CC
Confidence            85

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.51  E-value=5.2e-14  Score=140.16  Aligned_cols=248  Identities=18%  Similarity=0.186  Sum_probs=160.5

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      +.+.|.+++++++.+|.. -.++|+.|++++|.+..+|.. +  +.+|++|++++| .+..+|..+.  .+|+.|++++|
T Consensus       179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPEN-L--QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChh-h--ccCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence            567788888888887764 124788888888888888775 2  257888888888 7777776443  47888889888


Q ss_pred             CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468           95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL  174 (396)
Q Consensus        95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  174 (396)
                      .+..+|..+.  .+|+.|++++| .+..+|.. +.  ++|+.|++++|.++..              ...+.  ..|+.|
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L--------------P~~lp--~sL~~L  309 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTL--------------PAHLP--SGITHL  309 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccC--------------cccch--hhHHHH
Confidence            8888887654  47888888887 44466664 32  4788888888877653              11111  245666


Q ss_pred             EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccc
Q 044468          175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH  254 (396)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~  254 (396)
                      ++..+....++..     +  .++|+.|.+.++.- +... ..+  +++|+.|+++.|++..+.          .. ..+
T Consensus       310 ~Ls~N~Lt~LP~~-----l--~~sL~~L~Ls~N~L-t~LP-~~l--~~sL~~L~Ls~N~L~~LP----------~~-lp~  367 (754)
T PRK15370        310 NVQSNSLTALPET-----L--PPGLKTLEAGENAL-TSLP-ASL--PPELQVLDVSKNQITVLP----------ET-LPP  367 (754)
T ss_pred             HhcCCccccCCcc-----c--cccceeccccCCcc-ccCC-hhh--cCcccEEECCCCCCCcCC----------hh-hcC
Confidence            6666665544321     1  13477787776542 2221 112  267888888877765432          21 346


Q ss_pred             cCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468          255 SLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ  324 (396)
Q Consensus       255 ~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  324 (396)
                      +|++|++.+|.++.+|.-- .++|+.|+++++. +..+..         .+......++++..|++.+++
T Consensus       368 ~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~-L~~LP~---------sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        368 TITTLDVSRNALTNLPENL-PAALQIMQASRNN-LVRLPE---------SLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CcCEEECCCCcCCCCCHhH-HHHHHHHhhccCC-cccCch---------hHHHHhhcCCCccEEEeeCCC
Confidence            7888888888777765421 2468888888764 555432         111223345777888887764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=1.1e-13  Score=137.91  Aligned_cols=232  Identities=21%  Similarity=0.234  Sum_probs=159.1

Q ss_pred             CCCCCCc-cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468            3 GLTGAPR-IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus         3 ~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      +++.+|. +  .+.++.|++++|.++.+|.. ...+|+.|++++|.+..+|.. +.  .+|+.|++++| .+..+|..+.
T Consensus       189 ~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N-~L~~LP~~l~  261 (754)
T PRK15370        189 GLTTIPACI--PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN-RITELPERLP  261 (754)
T ss_pred             CcCcCCccc--ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChh-hh--ccccEEECcCC-ccCcCChhHh
Confidence            4555553 3  34788999999988887764 235899999999988888765 32  47889999998 7777776553


Q ss_pred             CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468           82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL  161 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  161 (396)
                        .+|+.|++++|.++.+|..+.  ++|++|++++| .+..+|.. +.  ++|+.|++.+|.+...              
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L--------------  319 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTAL--------------  319 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccccC--------------
Confidence              578999999888888887553  57899999887 44456654 22  4688888888877653              


Q ss_pred             hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecc
Q 044468          162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA  241 (396)
Q Consensus       162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~  241 (396)
                      ...+  .++|+.|.+..+....++..     +.  ++|+.|++.++.- ...+ ..+  .++|+.|++++|.+..+.   
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~--~sL~~L~Ls~N~L-~~LP-~~l--p~~L~~LdLs~N~Lt~LP---  383 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTSLPAS-----LP--PELQVLDVSKNQI-TVLP-ETL--PPTITTLDVSRNALTNLP---  383 (754)
T ss_pred             Cccc--cccceeccccCCccccCChh-----hc--CcccEEECCCCCC-CcCC-hhh--cCCcCEEECCCCcCCCCC---
Confidence            1111  15677788877776655421     11  3588888887643 2221 112  267888999877776432   


Q ss_pred             ccccccccccccccCcEeEEeCceeecCCc-----cCCCCCccEEeecccc
Q 044468          242 GEVKRIRETRGFHSLQKVYINYSKFRHATW-----LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       242 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-----l~~l~~L~~L~l~~~~  287 (396)
                             .. -...|+.|++.+|.++.+|.     .+.++.+..|++.+++
T Consensus       384 -------~~-l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        384 -------EN-LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             -------Hh-HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence                   22 23468888898887777653     2345788888888776

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.47  E-value=1.3e-15  Score=134.33  Aligned_cols=270  Identities=21%  Similarity=0.183  Sum_probs=178.6

Q ss_pred             CCCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc
Q 044468            1 GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL   78 (396)
Q Consensus         1 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~   78 (396)
                      |+|++.+|. .--+.-+.+.++.|+|+.+|..  ..+++||.|++++|.|+.|.+.+|..++.|..|-+.+++.++.+|.
T Consensus        55 ~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   55 GKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             CCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            467888873 1124678899999999999887  7899999999999999999888899999998888887548998884


Q ss_pred             -cccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch---hccchh
Q 044468           79 -GILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE---QEADRI  153 (396)
Q Consensus        79 -~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~---~~~~~~  153 (396)
                       .++++..|+-|.+.-|++.-+++ .+..+++|..|.+..| ....+++..+..+.+++++.+..+.+...   +|..++
T Consensus       134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~  212 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD  212 (498)
T ss_pred             hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence             57889999999998888885544 5888999999999887 66677775588888999988876653221   111110


Q ss_pred             -----ccC--CchhhhHhh--------------hcCCCCc-EEEEEecccchhhhhhhccCCCCCcccceEEecccCCCc
Q 044468          154 -----LFG--DSEVLVEEL--------------LALKHLN-LLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSN  211 (396)
Q Consensus       154 -----~~~--~~~~~~~~l--------------~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  211 (396)
                           ...  ........+              ..++.+. .+..........+.    ..++++++|++|++++. .++
T Consensus       213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~----~cf~~L~~L~~lnlsnN-~i~  287 (498)
T KOG4237|consen  213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA----KCFKKLPNLRKLNLSNN-KIT  287 (498)
T ss_pred             HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH----HHHhhcccceEeccCCC-ccc
Confidence                 000  000000000              0001110 00000000111111    22556677888888763 344


Q ss_pred             ccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc--cCCCCCccEEeecc
Q 044468          212 LLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISN  285 (396)
Q Consensus       212 ~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~  285 (396)
                      ......+.+...+++|.+..|+++.+...+..        ++..|+.|.+.+|+++.+.+  +..+.+|..|.+-.
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~--------~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ--------GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhh--------ccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            44445577777888888887777765543332        67888888888888888654  44567777776653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.47  E-value=5.4e-14  Score=142.17  Aligned_cols=309  Identities=20%  Similarity=0.211  Sum_probs=184.2

Q ss_pred             cCCCccccEEEccccc--cccccCC--CCCCCCcEEEccCC-ccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468           10 IGMWKEITRMSLMQNA--IQNLTET--PTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV   84 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~--~~~l~~~--~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~   84 (396)
                      -..++++++|-+..|.  +..++..  ..++.|++|++++| .+.++|.+ ++.+.+||+|+++++ .+..+|..++++.
T Consensus       541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk  618 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLK  618 (889)
T ss_pred             CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHH
Confidence            3446689999999986  5556553  78999999999988 56789988 999999999999999 8999999999999


Q ss_pred             cCCEEEccCCC-CCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhH
Q 044468           85 SLQHLDLSWTG-ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVE  163 (396)
Q Consensus        85 ~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (396)
                      .|.+|++..+. +..+|.....+.+|++|.+....  .......++.+.+|++|....+.....            ....
T Consensus       619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~------------~~~e  684 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV------------LLLE  684 (889)
T ss_pred             hhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh------------HhHh
Confidence            99999999884 45666677789999999997753  111122244444444443333322210            1222


Q ss_pred             hhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccc--hhh--hh-ccccccceeee-cccccee
Q 044468          164 ELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLS--AFS--FA-SLRHLWTLHLY-FNDFEEL  237 (396)
Q Consensus       164 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~--l~-~~~~L~~L~l~-~~~i~~l  237 (396)
                      .+..+..|..+....... ..........+..+.+|+.|.+.+|.......  ...  .. .++++..+.+. |....++
T Consensus       685 ~l~~~~~L~~~~~~l~~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l  763 (889)
T KOG4658|consen  685 DLLGMTRLRSLLQSLSIE-GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL  763 (889)
T ss_pred             hhhhhHHHHHHhHhhhhc-ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence            233333332111111100 00101111344556668889998876643211  000  11 13344444443 4444433


Q ss_pred             eeccccccccccccccccCcEeEEeCc-eeecC-CccCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468          238 NIDAGEVKRIRETRGFHSLQKVYINYS-KFRHA-TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL  315 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  315 (396)
                      ....          ..++|+.|.+..| .+++. +....+..++.+.+..+ ......           +......|+++
T Consensus       764 ~~~~----------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~-----------~~~~l~~l~~i  821 (889)
T KOG4658|consen  764 TWLL----------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR-----------MLCSLGGLPQL  821 (889)
T ss_pred             chhh----------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce-----------eeecCCCCcee
Confidence            2211          5699999999999 66663 44444555554333221 122110           00133455555


Q ss_pred             ceeeccCCcccccccCCC----CCCCCcceEEeccC-cccccCCCCCC
Q 044468          316 EYLILEGLQNLKSIHSSY----LPFPRLKEICVWKC-AELKKLPLDCN  358 (396)
Q Consensus       316 ~~L~l~~~~~l~~~~~~~----~~~~~L~~L~i~~c-~~L~~lp~~~~  358 (396)
                      ..+.+.+-. +..+....    ..+|.+.++.+.+| +++..+|...+
T Consensus       822 ~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~  868 (889)
T KOG4658|consen  822 YWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW  868 (889)
T ss_pred             EecccCccc-hhheehhcCcccccCccccccceeccccceeecCCccc
Confidence            555554432 44444333    56788899999997 88999998643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=1e-14  Score=133.94  Aligned_cols=137  Identities=26%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             CCCCCCcEEEccCCccC-----ccChHHHhcCccccEEEeecCCCCcc-------ccccccCCCcCCEEEccCCCCC-cc
Q 044468           33 PTCPHLRALFLHSNHLG-----TVSNNFFHSMASLRVLIFLYNRSLEN-------LPLGILNLVSLQHLDLSWTGIT-TL   99 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~-------l~~~l~~l~~L~~L~l~~~~l~-~l   99 (396)
                      ..+.+|+.|.++++.+.     .++.. +...+.+++++++++ .+..       ++..+.++++|++|++++|.+. ..
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            34445666666666552     12222 445555666666665 3321       1223445566666666666554 23


Q ss_pred             chhhhcCCc---ccEEecccccCCCC----CCcchhcCC-CcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC
Q 044468          100 PIELKYLVN---LKCLNLEYTFCLSR----IPQPVISDL-KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL  171 (396)
Q Consensus       100 ~~~l~~l~~---L~~L~l~~~~~~~~----~~~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  171 (396)
                      +..+..+.+   |++|++++|+....    +... +..+ ++|++|++.+|.+...         ........+..+++|
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~---------~~~~~~~~~~~~~~L  167 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA---------SCEALAKALRANRDL  167 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch---------HHHHHHHHHHhCCCc
Confidence            333333333   66666666543321    1111 3444 5666666666665531         011233344555566


Q ss_pred             cEEEEEeccc
Q 044468          172 NLLTVTLQIF  181 (396)
Q Consensus       172 ~~L~l~~~~~  181 (396)
                      +.|++..+..
T Consensus       168 ~~L~l~~n~l  177 (319)
T cd00116         168 KELNLANNGI  177 (319)
T ss_pred             CEEECcCCCC
Confidence            6666655544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.46  E-value=1.2e-15  Score=119.86  Aligned_cols=135  Identities=31%  Similarity=0.465  Sum_probs=124.6

Q ss_pred             CccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc--cccccccCCC
Q 044468            8 PRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE--NLPLGILNLV   84 (396)
Q Consensus         8 ~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~l~~l~   84 (396)
                      |.+..+.+|+.|++.+|++..+|.. +.+++|+.|++.-|.+..+|.+ |+.++.|++||+.+| .+.  .+|..+..+.
T Consensus        50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltyn-nl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYN-NLNENSLPGNFFYMT  127 (264)
T ss_pred             CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccc-ccccccCCcchhHHH
Confidence            6889999999999999999999988 9999999999999999999999 999999999999999 554  6787788889


Q ss_pred             cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      .|+.|.++.|.+..+|..++++++|+.|.+..| ..-++|+. ++.++.|++|++.+|.++-
T Consensus       128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             HHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceeee
Confidence            999999999999999999999999999999997 56678988 9999999999999998875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.45  E-value=2.7e-14  Score=131.09  Aligned_cols=187  Identities=20%  Similarity=0.136  Sum_probs=125.1

Q ss_pred             cCCCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccCccC------hHHHhcCccccEEEeecCCCCc-cc
Q 044468           10 IGMWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLGTVS------NNFFHSMASLRVLIFLYNRSLE-NL   76 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~-~l   76 (396)
                      +..+..++.++++++.++.     ++.. ...+.++.++++++.+...+      ...+..+++|++|++++| .+. ..
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~   97 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDG   97 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhH
Confidence            4456679999999998743     4444 67788999999988665211      123677899999999999 443 34


Q ss_pred             cccccCCC---cCCEEEccCCCCC-----ccchhhhcC-CcccEEecccccCCCC----CCcchhcCCCcccEEEeeccC
Q 044468           77 PLGILNLV---SLQHLDLSWTGIT-----TLPIELKYL-VNLKCLNLEYTFCLSR----IPQPVISDLKMLRALRMFECG  143 (396)
Q Consensus        77 ~~~l~~l~---~L~~L~l~~~~l~-----~l~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~  143 (396)
                      +..+..+.   +|++|++++|.++     .+...+..+ ++|+.|++++|.....    ++.. +..+++|++|++.+|.
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~  176 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCC
Confidence            44444444   4999999999887     233345667 8999999999965532    2223 5677899999999998


Q ss_pred             ccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468          144 FKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL  207 (396)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  207 (396)
                      +...         ........+...++|+.|++..+.......-.....+..+++|+.|+++++
T Consensus       177 l~~~---------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         177 IGDA---------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             CchH---------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            8742         011234456666788888888776543221111122344555666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.30  E-value=4.3e-14  Score=124.86  Aligned_cols=247  Identities=20%  Similarity=0.217  Sum_probs=169.5

Q ss_pred             CCCCCC--ccCCCccccEEEccccccccccCC--CCCCCCcEEEccC-CccCccChHHHhcCccccEEEeecCCCCccc-
Q 044468            3 GLTGAP--RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHS-NHLGTVSNNFFHSMASLRVLIFLYNRSLENL-   76 (396)
Q Consensus         3 ~l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-   76 (396)
                      +++.+|  .|+.+++||+|++++|+|+.+...  .+++.|..|-+.+ |+|.++|.+.|..+..|+.|.+..+ .+.-+ 
T Consensus        78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir  156 (498)
T KOG4237|consen   78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIR  156 (498)
T ss_pred             CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchh
Confidence            355565  689999999999999999997665  7888888887776 8999999999999999999999988 55433 


Q ss_pred             cccccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCC------------CCcchhcCCCcccEEEeeccC
Q 044468           77 PLGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSR------------IPQPVISDLKMLRALRMFECG  143 (396)
Q Consensus        77 ~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~------------~~~~~i~~l~~L~~L~l~~~~  143 (396)
                      ...+..+++|..|.+-.|.+..++. .+..+..++++++..|.+...            .+.. ++...-..-..+.+..
T Consensus       157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~R  235 (498)
T KOG4237|consen  157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKR  235 (498)
T ss_pred             HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHH
Confidence            4567789999999998888887776 477788888888877643221            1111 1111111111111111


Q ss_pred             ccchh-------c-cc--hhccC---CchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCC
Q 044468          144 FKVEQ-------E-AD--RILFG---DSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS  210 (396)
Q Consensus       144 ~~~~~-------~-~~--~~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  210 (396)
                      +..++       + +.  .+..+   ....-...+..+++|++++++++....+.+    ..+.+..+++.|.+... .+
T Consensus       236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~----~aFe~~a~l~eL~L~~N-~l  310 (498)
T KOG4237|consen  236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED----GAFEGAAELQELYLTRN-KL  310 (498)
T ss_pred             hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh----hhhcchhhhhhhhcCcc-hH
Confidence            11100       0 00  01111   112334568899999999999999876654    44566666999999763 33


Q ss_pred             cccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCc
Q 044468          211 NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS  264 (396)
Q Consensus       211 ~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  264 (396)
                      ....-..+.++..|+.|+++.|+|+.+......        ....|.+|.+-.|
T Consensus       311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~--------~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ--------TLFSLSTLNLLSN  356 (498)
T ss_pred             HHHHHHhhhccccceeeeecCCeeEEEeccccc--------ccceeeeeehccC
Confidence            444434578899999999999999987664432        5677888888766

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=5.6e-12  Score=103.01  Aligned_cols=131  Identities=24%  Similarity=0.270  Sum_probs=37.9

Q ss_pred             CCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc-cC
Q 044468            5 TGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI-LN   82 (396)
Q Consensus         5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l-~~   82 (396)
                      ++++.+.+..++++|+++++.++.+... ..+.+|+.|++++|.+..+..  +..+++|+.|++++| .++.++..+ ..
T Consensus        10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~   86 (175)
T PF14580_consen   10 EQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKN   86 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH
T ss_pred             ccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHh
Confidence            3445555555677777777777776655 456777777777777766643  666777777777777 666554433 24


Q ss_pred             CCcCCEEEccCCCCCccc--hhhhcCCcccEEecccccCCCCCC--cchhcCCCcccEEE
Q 044468           83 LVSLQHLDLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIP--QPVISDLKMLRALR  138 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~--~~~i~~l~~L~~L~  138 (396)
                      +++|++|++++|.+..+.  ..+..+++|++|++.+|+....-.  .-++..+|+|+.|+
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            677777777777665332  235566666666666664332211  12234455555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.23  E-value=3.2e-13  Score=120.30  Aligned_cols=296  Identities=17%  Similarity=0.135  Sum_probs=185.9

Q ss_pred             CCCcEEEccCCcc-C-ccChHHHhcCccccEEEeecCCCCcccc--ccccCCCcCCEEEccCC-CCCc--cchhhhcCCc
Q 044468           36 PHLRALFLHSNHL-G-TVSNNFFHSMASLRVLIFLYNRSLENLP--LGILNLVSLQHLDLSWT-GITT--LPIELKYLVN  108 (396)
Q Consensus        36 ~~L~~L~l~~~~~-~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~~~-~l~~--l~~~l~~l~~  108 (396)
                      .-|+.|.+.++.- . .-...+...+++++.|.+.+|..++...  ..-..+.+|+++++..| .++.  +......+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3566777777732 1 1112335677888888888875554221  11235777888888776 5552  2223456788


Q ss_pred             ccEEecccccCCCCCC-cchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhh
Q 044468          109 LKCLNLEYTFCLSRIP-QPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL  187 (396)
Q Consensus       109 L~~L~l~~~~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  187 (396)
                      |+++++++|..+..-. +....++..++.+...+|.-...           +.....-+....+.++++....  .+++.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-----------e~l~~~~~~~~~i~~lnl~~c~--~lTD~  284 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-----------EALLKAAAYCLEILKLNLQHCN--QLTDE  284 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-----------HHHHHHhccChHhhccchhhhc--cccch
Confidence            8888888875443311 12245566677776666643332           1122222222333333322221  11111


Q ss_pred             hhccCCCCCcccceEEecccCCCcccchhhhh-ccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-
Q 044468          188 LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFA-SLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS-  264 (396)
Q Consensus       188 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-  264 (396)
                      .....-..++.|+.+..+++...++..+.++. ++++|+.|.++ |.++.+.++...+.       .++.|+.+++.+| 
T Consensus       285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-------n~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-------NCPHLERLDLEECG  357 (483)
T ss_pred             HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-------CChhhhhhcccccc
Confidence            10111234666999999999887777655555 68999999999 88898888877666       8899999999999 


Q ss_pred             eeec--CCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccC-CCCCCCCcc
Q 044468          265 KFRH--ATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHS-SYLPFPRLK  340 (396)
Q Consensus       265 ~l~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~  340 (396)
                      ..++  +.. ..++|.|+.|.++.|+.+++... .       ...........|+.+.+.+|+.+.+-.. ....+++|+
T Consensus       358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi-~-------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le  429 (483)
T KOG4341|consen  358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGI-R-------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE  429 (483)
T ss_pred             eehhhhHhhhccCCchhccCChhhhhhhhhhhh-h-------hhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence            5555  333 33599999999999987665511 1       1122556788999999999998765433 345688999


Q ss_pred             eEEeccCcccccCCCCCCC
Q 044468          341 EICVWKCAELKKLPLDCNQ  359 (396)
Q Consensus       341 ~L~i~~c~~L~~lp~~~~~  359 (396)
                      .+++.+|..+.+-|...+.
T Consensus       430 ri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  430 RIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             eeeeechhhhhhhhhHHHH
Confidence            9999999988886665443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.13  E-value=1.7e-12  Score=115.72  Aligned_cols=266  Identities=18%  Similarity=0.142  Sum_probs=180.2

Q ss_pred             HhcC-ccccEEEeecCCCCcccc--ccccCCCcCCEEEccCC-CCC--ccchhhhcCCcccEEecccccCCCCCC-cchh
Q 044468           56 FHSM-ASLRVLIFLYNRSLENLP--LGILNLVSLQHLDLSWT-GIT--TLPIELKYLVNLKCLNLEYTFCLSRIP-QPVI  128 (396)
Q Consensus        56 ~~~l-~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~~~-~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~i  128 (396)
                      +.++ ..|+.|.++++..+..-+  ....++++.++|++.+| +++  .+-..-..+++|+++++..|....... +...
T Consensus       133 ~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  133 ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence            3444 368999999996655333  34458999999999988 565  233334679999999999875544432 3345


Q ss_pred             cCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccC
Q 044468          129 SDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN  208 (396)
Q Consensus       129 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  208 (396)
                      ..+++|.++++++|....-        .   ..-.-..+.+.++.+...+........+...  -+.+..+..+++..|.
T Consensus       213 ~gC~kL~~lNlSwc~qi~~--------~---gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~--~~~~~~i~~lnl~~c~  279 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISG--------N---GVQALQRGCKELEKLSLKGCLELELEALLKA--AAYCLEILKLNLQHCN  279 (483)
T ss_pred             HhhhhHHHhhhccCchhhc--------C---cchHHhccchhhhhhhhcccccccHHHHHHH--hccChHhhccchhhhc
Confidence            6799999999999865431        1   1122333444455554443332222222211  1234446777777887


Q ss_pred             CCcccchhhhh-ccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-eeecCC--ccCC-CCCccEEe
Q 044468          209 NSNLLSAFSFA-SLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS-KFRHAT--WLVL-APRAKVIR  282 (396)
Q Consensus       209 ~~~~~~~~~l~-~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~--~l~~-l~~L~~L~  282 (396)
                      .+++.+.-.+. .+..|+.|..+ ++.+.+..+...+.       ++++|+.+.+.+| ++++..  .++. .+.|+.++
T Consensus       280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~-------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~  352 (483)
T KOG4341|consen  280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ-------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD  352 (483)
T ss_pred             cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc-------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence            77777644333 57889999999 77777766655544       8899999999999 888853  3544 89999999


Q ss_pred             eccccccceeecccccccchhccccccccccCcceeeccCCcccccc-----cCCCCCCCCcceEEeccCccccc
Q 044468          283 ISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI-----HSSYLPFPRLKEICVWKCAELKK  352 (396)
Q Consensus       283 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~i~~c~~L~~  352 (396)
                      +..|....+-           .+......++.|+.+.+++|.....-     .....+...|+.+++.+||.+.+
T Consensus       353 ~e~~~~~~d~-----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  353 LEECGLITDG-----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             ccccceehhh-----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence            9887653322           12235678999999999999765543     33456688999999999998876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=1.3e-10  Score=95.02  Aligned_cols=140  Identities=26%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             cccccccCCCCCCCCcEEEccCCccCccChHHHh-cCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchh
Q 044468           24 NAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFH-SMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIE  102 (396)
Q Consensus        24 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~  102 (396)
                      +.+...+...+...++.|++.++.|..+..  ++ .+.+|+.|++++| .++.++ .+..++.|++|++++|.++.+...
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             -----------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHH
T ss_pred             cccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence            344445555667788999999998887753  44 6789999999999 777774 477889999999999999988765


Q ss_pred             h-hcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEE
Q 044468          103 L-KYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVT  177 (396)
Q Consensus       103 l-~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  177 (396)
                      + ..+++|++|++++|....--.-..+..+++|+.|++.+|+++..          ..--...+..+|.|+.|+-.
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----------~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK----------KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS----------TTHHHHHHHH-TT-SEETTE
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch----------hhHHHHHHHHcChhheeCCE
Confidence            5 46899999999988443321222367889999999999887652          11124455667777766633

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.5e-11  Score=110.48  Aligned_cols=219  Identities=18%  Similarity=0.122  Sum_probs=146.1

Q ss_pred             CCCCC-CccCCCccccEEEccccccccccC--C-CCCCCCcEEEccCCccCcc--ChHHHhcCccccEEEeecCCCCc-c
Q 044468            3 GLTGA-PRIGMWKEITRMSLMQNAIQNLTE--T-PTCPHLRALFLHSNHLGTV--SNNFFHSMASLRVLIFLYNRSLE-N   75 (396)
Q Consensus         3 ~l~~~-~~~~~~~~L~~L~l~~~~~~~l~~--~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~-~   75 (396)
                      |+.++ ..-.++++|+.+.+.++.+...+.  . ..|++++.|++++|-+..+  ...+...+++|+.|+++.| .+. .
T Consensus       109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~  187 (505)
T KOG3207|consen  109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNF  187 (505)
T ss_pred             cHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCC
Confidence            44444 234568889999999998877553  3 7899999999999965322  2344788999999999999 443 2


Q ss_pred             cccc-ccCCCcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch
Q 044468           76 LPLG-ILNLVSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR  152 (396)
Q Consensus        76 l~~~-l~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~  152 (396)
                      ..+. -..+.+|+.|.++.|+++  ++...+..+++|+.|++..|.....-... ..-+..|++|++++|++...     
T Consensus       188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~-----  261 (505)
T KOG3207|consen  188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF-----  261 (505)
T ss_pred             ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc-----
Confidence            2221 125789999999999888  55556778899999999987422211111 33467789999999988764     


Q ss_pred             hccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhh--ccCCCCCcccceEEecccCCCcccchhhhhccccccceeee
Q 044468          153 ILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN--YCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY  230 (396)
Q Consensus       153 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  230 (396)
                             +.......++.|+.|.++.++..++.....  .......+.|+.|++..+.......+..+..+++|+.|.+.
T Consensus       262 -------~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  262 -------DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             -------ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence                   455677788888888888777765433221  12234455677777776544333333445556667777666


Q ss_pred             ccccc
Q 044468          231 FNDFE  235 (396)
Q Consensus       231 ~~~i~  235 (396)
                      ++.+.
T Consensus       335 ~n~ln  339 (505)
T KOG3207|consen  335 LNYLN  339 (505)
T ss_pred             ccccc
Confidence            55543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.4e-11  Score=108.19  Aligned_cols=212  Identities=19%  Similarity=0.144  Sum_probs=128.6

Q ss_pred             HhcCccccEEEeecCCCCccccc--cccCCCcCCEEEccCCCCC---ccchhhhcCCcccEEecccccCCCCCCcchhcC
Q 044468           56 FHSMASLRVLIFLYNRSLENLPL--GILNLVSLQHLDLSWTGIT---TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISD  130 (396)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~l~~--~l~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~  130 (396)
                      -.++.+|+...+.++ .+...+.  -...+++++.||++.|-+.   .+-.....+++|+.|+++.|++........-..
T Consensus       117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            455666777777766 5554432  3446777777777776544   333445677777777777775444433332335


Q ss_pred             CCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCC
Q 044468          131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS  210 (396)
Q Consensus       131 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  210 (396)
                      ++.|+.|.+..|+++.-            .....+...|.|+.|.+..+......    .........|+.|++++...+
T Consensus       196 l~~lK~L~l~~CGls~k------------~V~~~~~~fPsl~~L~L~~N~~~~~~----~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWK------------DVQWILLTFPSLEVLYLEANEIILIK----ATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hhhhheEEeccCCCCHH------------HHHHHHHhCCcHHHhhhhccccccee----cchhhhhhHHhhccccCCccc
Confidence            67788888888877753            45566667778887877777421111    111222344788888876665


Q ss_pred             cccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc---cCCCCCccEEeeccc
Q 044468          211 NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW---LVLAPRAKVIRISNC  286 (396)
Q Consensus       211 ~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~---l~~l~~L~~L~l~~~  286 (396)
                      ..........++.|..|+++.+.+.++..-..+.  ...+..|++|++|.+..|.+.+.+.   +..+++|+.|.+...
T Consensus       260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s--~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES--LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccccccccccccchhhhhccccCcchhcCCCccc--hhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            5554445667788888888877776655411100  0111278899999998886555444   444677777776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=1.1e-10  Score=102.08  Aligned_cols=97  Identities=15%  Similarity=-0.017  Sum_probs=43.4

Q ss_pred             CCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCC
Q 044468          130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNN  209 (396)
Q Consensus       130 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  209 (396)
                      +-+.||++...+|.+...         +-......+...+.|+.+.+..+++..-....-...+..|++|+.|++.++..
T Consensus       155 ~~~~Lrv~i~~rNrlen~---------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENG---------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             CCcceEEEEeeccccccc---------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence            345566666555554431         11123344455556666665555543222212223345556666666655332


Q ss_pred             Ccccch---hhhhccccccceeeeccccc
Q 044468          210 SNLLSA---FSFASLRHLWTLHLYFNDFE  235 (396)
Q Consensus       210 ~~~~~~---~~l~~~~~L~~L~l~~~~i~  235 (396)
                      ......   ..++.+++|+.|++....++
T Consensus       226 t~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  226 TLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             hhHHHHHHHHHhcccchheeecccccccc
Confidence            111111   12444455555555533333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.91  E-value=6.6e-11  Score=109.66  Aligned_cols=191  Identities=26%  Similarity=0.283  Sum_probs=135.9

Q ss_pred             EEEccccccccccCC-C--CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           18 RMSLMQNAIQNLTET-P--TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        18 ~L~l~~~~~~~l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      +|.|++-.++.+|.. .  .+..-...+++.|.+.++|.. +..|..|+.+.++.| .+..+|..++++..|++++++.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence            355566666666555 2  333344578888988899888 788889999999998 88888999999999999999999


Q ss_pred             CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468           95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL  174 (396)
Q Consensus        95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  174 (396)
                      .++.+|..++.++ |+.|-+++| ....+|.. ++....|..|+.+.|.+..              ....+.++..|+.|
T Consensus       132 qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s--------------lpsql~~l~slr~l  194 (722)
T KOG0532|consen  132 QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS--------------LPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhh--------------chHHhhhHHHHHHH
Confidence            9999999888876 888888886 77888888 8888899999999888765              67777788888777


Q ss_pred             EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc
Q 044468          175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE  235 (396)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  235 (396)
                      .+..+....++...     ..++ |..|+++. +.+....+ .+..|.+|++|-+.+|.++
T Consensus       195 ~vrRn~l~~lp~El-----~~Lp-Li~lDfSc-Nkis~iPv-~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  195 NVRRNHLEDLPEEL-----CSLP-LIRLDFSC-NKISYLPV-DFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHhhhhhhhCCHHH-----hCCc-eeeeeccc-Cceeecch-hhhhhhhheeeeeccCCCC
Confidence            76666665544321     1111 55555543 22222221 2455666666666655554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.78  E-value=4.7e-09  Score=99.32  Aligned_cols=192  Identities=27%  Similarity=0.325  Sum_probs=109.2

Q ss_pred             EEEcccccccc-ccCCCCCCCCcEEEccCCccCccChHHHhcCc-cccEEEeecCCCCccccccccCCCcCCEEEccCCC
Q 044468           18 RMSLMQNAIQN-LTETPTCPHLRALFLHSNHLGTVSNNFFHSMA-SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTG   95 (396)
Q Consensus        18 ~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~   95 (396)
                      .+....+.+.. .......+.++.|.+.++.+.+++.. ...+. +|+.|+++.+ .+..+|..++++++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence            35555555522 22224456677777777777666654 44443 6777777777 666665556677777777777777


Q ss_pred             CCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468           96 ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT  175 (396)
Q Consensus        96 l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  175 (396)
                      ++.+|......++|+.|++++| ....+|.. ++.+..|+++.+.++....              .+..+.++..+..+.
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~~--------------~~~~~~~~~~l~~l~  238 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNSIIE--------------LLSSLSNLKNLSGLE  238 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCccee--------------cchhhhhcccccccc
Confidence            7777666556677777777776 55555553 4455557777777664322              344555555555555


Q ss_pred             EEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc
Q 044468          176 VTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE  235 (396)
Q Consensus       176 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  235 (396)
                      +..+....+.     ..+.+.+.++.|++.++.......   +....+++.|+++.+.+.
T Consensus       239 l~~n~~~~~~-----~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         239 LSNNKLEDLP-----ESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cCCceeeecc-----chhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence            4444443321     223334446666666543222222   555666777777644443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.6e-10  Score=96.91  Aligned_cols=184  Identities=15%  Similarity=0.082  Sum_probs=100.5

Q ss_pred             cccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhh
Q 044468          108 NLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL  187 (396)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  187 (396)
                      .|+++|+++......--..++..|.+|+.|.+.+..+..             .....++.-.+|+.+++++...-.  ..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-------------~I~~~iAkN~~L~~lnlsm~sG~t--~n  250 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-------------PIVNTIAKNSNLVRLNLSMCSGFT--EN  250 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-------------HHHHHHhccccceeeccccccccc--hh
Confidence            466666666433222112334556666777766666654             356666666667766666543311  11


Q ss_pred             hhccCCCCCcccceEEecccCCCcccchhhhh-ccccccceeee-c-cccceeeeccccccccccccccccCcEeEEeCc
Q 044468          188 LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFA-SLRHLWTLHLY-F-NDFEELNIDAGEVKRIRETRGFHSLQKVYINYS  264 (396)
Q Consensus       188 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~-~-~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  264 (396)
                      ....-+.+|+.|+.|+++||.-.+......+. --++|..|+++ + .++.+-.+....       ..||+|.+|+++.|
T Consensus       251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~-------~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV-------RRCPNLVHLDLSDS  323 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH-------HhCCceeeeccccc
Confidence            11122445666777777777543332111112 12567777777 1 111111111111       16788888888888


Q ss_pred             -eeec--CCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcc
Q 044468          265 -KFRH--ATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQN  325 (396)
Q Consensus       265 -~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  325 (396)
                       .+++  ...+.+++.|++|.++.|+.+   +.+.+.         .....|.|.+|++.||-.
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~---------~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETLL---------ELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcCC---ChHHee---------eeccCcceEEEEeccccC
Confidence             6666  233566788888888888753   221111         345678888888888743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=9.4e-10  Score=94.52  Aligned_cols=128  Identities=23%  Similarity=0.175  Sum_probs=71.5

Q ss_pred             CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEeccc
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY  116 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~  116 (396)
                      .|+.+++++|.|..+..+ ++-.|.+++|++++| .+..+.. +..+++|++||+++|.++.+..+-.++-+.+.|.+++
T Consensus       285 ~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            455566666666555555 555566666666666 4443322 4555666666666666555544444555666666666


Q ss_pred             ccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc
Q 044468          117 TFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG  182 (396)
Q Consensus       117 ~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  182 (396)
                      | .+..+..  ++++-+|..|++.+|++...            +....+++++.|+.+.+.++...
T Consensus       362 N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~l------------deV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  362 N-KIETLSG--LRKLYSLVNLDLSSNQIEEL------------DEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             h-hHhhhhh--hHhhhhheeccccccchhhH------------HHhcccccccHHHHHhhcCCCcc
Confidence            5 3333322  55555666666666665543            44555566666666665555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.77  E-value=9.8e-10  Score=102.05  Aligned_cols=134  Identities=22%  Similarity=0.301  Sum_probs=103.7

Q ss_pred             ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      .+.++..|+.++|+.|++..+|...+.--|++|.+++|++..+|.+ ++...+|..||.+.| .+..+|+.++++.+|+.
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHH
Confidence            4666777788888888888877774444678888888888888777 677778888888888 77777777888888888


Q ss_pred             EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468           89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      |.++.|++..+|..+..+ .|..||+++| .+..+|.. |.+|+.|++|.+.+|.+...
T Consensus       194 l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  194 LNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCCC
Confidence            888888888888877744 4778888776 67777877 88888888888888877763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.74  E-value=1.1e-08  Score=96.85  Aligned_cols=193  Identities=27%  Similarity=0.292  Sum_probs=141.1

Q ss_pred             EEEccCCcc-CccChHHHhcCccccEEEeecCCCCccccccccCCC-cCCEEEccCCCCCccchhhhcCCcccEEecccc
Q 044468           40 ALFLHSNHL-GTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV-SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYT  117 (396)
Q Consensus        40 ~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~-~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~  117 (396)
                      .+....+.+ ..+..  +..+..++.|++.++ .+..++...+.+. +|+.|+++++.+..+|..++.+++|+.|++..|
T Consensus        97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh--hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence            577777776 34333  677789999999999 8889988788775 999999999999999888999999999999998


Q ss_pred             cCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecc-cchhhhhhhccCCCCC
Q 044468          118 FCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI-FGALQRLLNYCNSSRS  196 (396)
Q Consensus       118 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~~  196 (396)
                       ....++.. .+..++|+.|.++++.+...              .........|+++.+..+. .....      .+.+.
T Consensus       174 -~l~~l~~~-~~~~~~L~~L~ls~N~i~~l--------------~~~~~~~~~L~~l~~~~N~~~~~~~------~~~~~  231 (394)
T COG4886         174 -DLSDLPKL-LSNLSNLNNLDLSGNKISDL--------------PPEIELLSALEELDLSNNSIIELLS------SLSNL  231 (394)
T ss_pred             -hhhhhhhh-hhhhhhhhheeccCCccccC--------------chhhhhhhhhhhhhhcCCcceecch------hhhhc
Confidence             56666664 45889999999999988763              2222445558888888774 32222      23344


Q ss_pred             cccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC
Q 044468          197 INTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA  269 (396)
Q Consensus       197 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  269 (396)
                      .++..+.+.+......  ...+..++.++.|+++++.+.++..  .+        ...+++.|++.++.+...
T Consensus       232 ~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~--~~--------~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         232 KNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS--LG--------SLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccccccCCceeeec--cchhccccccceecccccccccccc--cc--------ccCccCEEeccCcccccc
Confidence            4455565544322221  1236677889999999999887764  11        689999999999865554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.73  E-value=1.3e-09  Score=93.76  Aligned_cols=133  Identities=28%  Similarity=0.356  Sum_probs=110.9

Q ss_pred             cCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468           10 IGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      +..|..|+++++++|.++.+..+ .-.|.++.|++++|.+..+..  +..+++|..||+++| .+..+..+=.++-+.++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence            45678899999999999998777 789999999999999987755  789999999999999 77766554457788999


Q ss_pred             EEccCCCCCccchhhhcCCcccEEecccccCCCCCC-cchhcCCCcccEEEeeccCccch
Q 044468           89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIP-QPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      |.++.|.+..+. +++++.+|..||+.+|+. ..+. ...|+++|-|+++.+.+|.+...
T Consensus       357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eehhhhhHhhhh-hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcccc
Confidence            999999888774 688999999999999844 3332 23389999999999999987663

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=6.3e-10  Score=95.43  Aligned_cols=183  Identities=21%  Similarity=0.101  Sum_probs=127.6

Q ss_pred             CcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468           84 VSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL  161 (396)
Q Consensus        84 ~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  161 (396)
                      ..|+++|+++..++  .+-..+..+.+|+.|.+.+....+.+... |.+-.+|+.|+++.|.--..           .+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~-----------n~~  252 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE-----------NAL  252 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch-----------hHH
Confidence            35999999998887  55556788999999999998666666665 77888999999998743221           133


Q ss_pred             hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcc-cchhhh-hccccccceeee-ccccceee
Q 044468          162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNL-LSAFSF-ASLRHLWTLHLY-FNDFEELN  238 (396)
Q Consensus       162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l-~~~~~L~~L~l~-~~~i~~l~  238 (396)
                      -..+.+++.|+.|.++........--......+  .+|+.|+++++...-. ..++.+ ..||+|..|+++ +..+++-.
T Consensus       253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~  330 (419)
T KOG2120|consen  253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC  330 (419)
T ss_pred             HHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence            446678888888888877654322111112222  3388999988754322 233444 469999999999 77776633


Q ss_pred             eccccccccccccccccCcEeEEeCc-eeec--CCccCCCCCccEEeeccccc
Q 044468          239 IDAGEVKRIRETRGFHSLQKVYINYS-KFRH--ATWLVLAPRAKVIRISNCQR  288 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--l~~l~~l~~L~~L~l~~~~~  288 (396)
                      +....        .|+.|++|.++.| .+..  +-.+...|+|.+|++.+|-.
T Consensus       331 ~~~~~--------kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  331 FQEFF--------KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHHHH--------hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            32222        7899999999999 5443  44567789999999998753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.57  E-value=1.2e-08  Score=89.59  Aligned_cols=214  Identities=16%  Similarity=0.130  Sum_probs=116.4

Q ss_pred             cCCCccccEEEccccc---c--------ccccCC-CCCCCCcEEEccCCccC-c-cC--hHHHhcCccccEEEeecCCCC
Q 044468           10 IGMWKEITRMSLMQNA---I--------QNLTET-PTCPHLRALFLHSNHLG-T-VS--NNFFHSMASLRVLIFLYNRSL   73 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~---~--------~~l~~~-~~~~~L~~L~l~~~~~~-~-~~--~~~~~~l~~L~~L~l~~~~~~   73 (396)
                      +.+.+.||..++++--   .        ..+... ..+++|++|++++|.++ . ++  ...+.++..|+.|.+.+| -+
T Consensus        54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Gl  132 (382)
T KOG1909|consen   54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GL  132 (382)
T ss_pred             HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CC
Confidence            3445567777776531   1        112222 56677777777777553 1 11  123566777777777777 44


Q ss_pred             ccccc--------------cccCCCcCCEEEccCCCCCcc-----chhhhcCCcccEEecccccCCCC----CCcchhcC
Q 044468           74 ENLPL--------------GILNLVSLQHLDLSWTGITTL-----PIELKYLVNLKCLNLEYTFCLSR----IPQPVISD  130 (396)
Q Consensus        74 ~~l~~--------------~l~~l~~L~~L~l~~~~l~~l-----~~~l~~l~~L~~L~l~~~~~~~~----~~~~~i~~  130 (396)
                      +....              -++.-+.|+++...+|.+..-     ...+...+.|+.+.+..|..-..    +..+ +..
T Consensus       133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea-l~~  211 (382)
T KOG1909|consen  133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA-LEH  211 (382)
T ss_pred             ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH-HHh
Confidence            42211              123456677777777766532     23355667777777776633221    1122 556


Q ss_pred             CCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCC-CCCcccceEEecccCC
Q 044468          131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNS-SRSINTQSLCLRHLNN  209 (396)
Q Consensus       131 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~  209 (396)
                      +++|++|++..|.++..         +.......++.+++|+.+.+.++....-........+ ...+.|+.|.+.++..
T Consensus       212 ~~~LevLdl~DNtft~e---------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLE---------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             CCcceeeecccchhhhH---------HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            77777777777766652         2233455666777777777665554321111111111 1245577777776543


Q ss_pred             Ccccch---hhhhccccccceeeecccc
Q 044468          210 SNLLSA---FSFASLRHLWTLHLYFNDF  234 (396)
Q Consensus       210 ~~~~~~---~~l~~~~~L~~L~l~~~~i  234 (396)
                      ......   ..+...|.|+.|++..|.+
T Consensus       283 t~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  283 TRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            222211   1234467788888876665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=5.6e-08  Score=65.27  Aligned_cols=57  Identities=32%  Similarity=0.423  Sum_probs=25.9

Q ss_pred             CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT   94 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~   94 (396)
                      +|++|++++|.+..++.+.|..+++|++|++++| .+..++ ..+.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444444444444444443444444455554444 333332 23344444444444444

...

>PLN03150 hypothetical protein; Provisional

Probab=98.52  E-value=3.4e-07  Score=91.17  Aligned_cols=103  Identities=23%  Similarity=0.341  Sum_probs=57.9

Q ss_pred             CcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCC-ccchhhhcCCcccEEecc
Q 044468           38 LRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGIT-TLPIELKYLVNLKCLNLE  115 (396)
Q Consensus        38 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~  115 (396)
                      ++.|+++++.+. .+|.. +..+++|+.|++++|...+.+|..++.+++|+.|++++|.++ .+|..++++++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            455566666553 44444 566666666666666333355555666666666666666555 555556666666666666


Q ss_pred             cccCCCCCCcchhcC-CCcccEEEeecc
Q 044468          116 YTFCLSRIPQPVISD-LKMLRALRMFEC  142 (396)
Q Consensus       116 ~~~~~~~~~~~~i~~-l~~L~~L~l~~~  142 (396)
                      +|.+.+.+|.. ++. ..++..+++.+|
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCC
Confidence            66555555554 333 234445555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.50  E-value=1.4e-07  Score=63.36  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=53.0

Q ss_pred             ccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecC
Q 044468           14 KEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN   70 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (396)
                      ++|++|++++|.+..++..  ..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            5789999999999998865  88999999999999999998887999999999999998

...

>PLN03150 hypothetical protein; Provisional

Probab=98.45  E-value=6.6e-07  Score=89.11  Aligned_cols=109  Identities=23%  Similarity=0.337  Sum_probs=91.2

Q ss_pred             cccEEEcccccccc-ccCC-CCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEc
Q 044468           15 EITRMSLMQNAIQN-LTET-PTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDL   91 (396)
Q Consensus        15 ~L~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l   91 (396)
                      .++.|+++++.+.. ++.. ..+++|+.|++++|.+. .+|.. +..+++|++|++++|...+.+|..++++++|++|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37889999999987 6666 88999999999999985 77777 899999999999999555588999999999999999


Q ss_pred             cCCCCC-ccchhhhcC-CcccEEecccccCCCCCC
Q 044468           92 SWTGIT-TLPIELKYL-VNLKCLNLEYTFCLSRIP  124 (396)
Q Consensus        92 ~~~~l~-~l~~~l~~l-~~L~~L~l~~~~~~~~~~  124 (396)
                      ++|.++ .+|..+... .++..+++.+|......|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999887 888887653 567788888875444433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=4.3e-08  Score=93.10  Aligned_cols=216  Identities=25%  Similarity=0.217  Sum_probs=114.6

Q ss_pred             CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEec
Q 044468           35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNL  114 (396)
Q Consensus        35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l  114 (396)
                      +..++.+.+..+.+..+... +..+.+|++|++..+ .+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence            44555555666655543222 566777777777777 66555443566777777777777777654 3556666777777


Q ss_pred             ccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCC
Q 044468          115 EYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSS  194 (396)
Q Consensus       115 ~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  194 (396)
                      .+| .+..+..  +..+++|+.+++.+|.+...            .... +..+..++.+.+.++.......+.....  
T Consensus       148 ~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~i------------e~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~--  209 (414)
T KOG0531|consen  148 SGN-LISDISG--LESLKSLKLLDLSYNRIVDI------------ENDE-LSELISLEELDLGGNSIREIEGLDLLKK--  209 (414)
T ss_pred             ccC-cchhccC--CccchhhhcccCCcchhhhh------------hhhh-hhhccchHHHhccCCchhcccchHHHHH--
Confidence            776 4444433  55567777777777766543            0101 4555566666666665544433322111  


Q ss_pred             CCcccceEEecccCCCcccchhhhhccc--cccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCcc
Q 044468          195 RSINTQSLCLRHLNNSNLLSAFSFASLR--HLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWL  272 (396)
Q Consensus       195 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l  272 (396)
                          +..+.+....-....+   +..+.  +|+.+++..+.+....-..         ..+.++..|++..+.+..+..+
T Consensus       210 ----l~~~~l~~n~i~~~~~---l~~~~~~~L~~l~l~~n~i~~~~~~~---------~~~~~l~~l~~~~n~~~~~~~~  273 (414)
T KOG0531|consen  210 ----LVLLSLLDNKISKLEG---LNELVMLHLRELYLSGNRISRSPEGL---------ENLKNLPVLDLSSNRISNLEGL  273 (414)
T ss_pred             ----HHHhhcccccceeccC---cccchhHHHHHHhcccCccccccccc---------cccccccccchhhccccccccc
Confidence                2222222211111111   22222  2666666655555431000         1466667777666655555555


Q ss_pred             CCCCCccEEeecccc
Q 044468          273 VLAPRAKVIRISNCQ  287 (396)
Q Consensus       273 ~~l~~L~~L~l~~~~  287 (396)
                      ...+.+..+......
T Consensus       274 ~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  274 ERLPKLSELWLNDNK  288 (414)
T ss_pred             cccchHHHhccCcch
Confidence            555555555554443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=9e-09  Score=98.41  Aligned_cols=184  Identities=21%  Similarity=0.240  Sum_probs=107.6

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCC--ccCccChHHHhcC------ccccEEEeecCCCC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSN--HLGTVSNNFFHSM------ASLRVLIFLYNRSL   73 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~--~~~~~~~~~~~~l------~~L~~L~l~~~~~~   73 (396)
                      +.++.-+|..++.||+|.+.++++...... .--..|+.|.+.+.  .+.++-..-.+..      ..|.+.++++| .+
T Consensus        98 ~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L  176 (1096)
T KOG1859|consen   98 DPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RL  176 (1096)
T ss_pred             CCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hH
Confidence            334433566778888888888877653333 22234444444332  1111100000111      24666677777 66


Q ss_pred             ccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchh
Q 044468           74 ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRI  153 (396)
Q Consensus        74 ~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~  153 (396)
                      ..+.+++.-++.|++|+|++|+++++. .+..+++|++||++.| .+..+|.-.-..+ .|+.|.+.+|.++.       
T Consensus       177 ~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~t-------  246 (1096)
T KOG1859|consen  177 VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALTT-------  246 (1096)
T ss_pred             HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHHh-------
Confidence            666666777788888888888777665 5677788888888876 4555554111123 38888888876653       


Q ss_pred             ccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccC
Q 044468          154 LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN  208 (396)
Q Consensus       154 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  208 (396)
                              +..+.+++.|+.|+++.|-+.....+....   .+..|+.|++.++.
T Consensus       247 --------L~gie~LksL~~LDlsyNll~~hseL~pLw---sLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  247 --------LRGIENLKSLYGLDLSYNLLSEHSELEPLW---SLSSLIVLWLEGNP  290 (1096)
T ss_pred             --------hhhHHhhhhhhccchhHhhhhcchhhhHHH---HHHHHHHHhhcCCc
Confidence                    456666777777777777665555443322   23336677776643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=1.2e-08  Score=97.58  Aligned_cols=129  Identities=26%  Similarity=0.334  Sum_probs=103.4

Q ss_pred             CccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEE
Q 044468           13 WKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLD   90 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~   90 (396)
                      |..|.+.+++.|.+..+... .-++.|+.|++++|++.++.  ++..|++|+.||+++| .+..+|.. ...+. |+.|.
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heeee
Confidence            56788899999998887776 88999999999999998775  3899999999999999 88887742 22344 99999


Q ss_pred             ccCCCCCccchhhhcCCcccEEecccccCCCCCC-cchhcCCCcccEEEeeccCccch
Q 044468           91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIP-QPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      +++|.++.+- ++.++++|+.||++.| .+.... -..+..+..|+.|++.+|.+.-.
T Consensus       239 lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  239 LRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            9999998774 6889999999999998 433322 22266778899999999876543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=5e-07  Score=76.95  Aligned_cols=247  Identities=16%  Similarity=0.111  Sum_probs=142.5

Q ss_pred             CCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccC----ccChH------HHhcCccccEEEeecCCCCc-
Q 044468           12 MWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLG----TVSNN------FFHSMASLRVLIFLYNRSLE-   74 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~----~~~~~------~~~~l~~L~~L~l~~~~~~~-   74 (396)
                      .+..++.+++++|.|..     +... .+-.+|+..+++.-..+    +++..      ++.+|++|+..+++.| -++ 
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCc
Confidence            46678889999998765     3333 56778888888766322    22221      3678899999999988 444 


Q ss_pred             cccc----cccCCCcCCEEEccCCCCCccch-----h---------hhcCCcccEEecccccCCCCCCcc----hhcCCC
Q 044468           75 NLPL----GILNLVSLQHLDLSWTGITTLPI-----E---------LKYLVNLKCLNLEYTFCLSRIPQP----VISDLK  132 (396)
Q Consensus        75 ~l~~----~l~~l~~L~~L~l~~~~l~~l~~-----~---------l~~l~~L~~L~l~~~~~~~~~~~~----~i~~l~  132 (396)
                      ..|+    .++.-..|.+|.+++|++..+..     .         ...-+.|+++..+.|++ .+.+..    .+..-.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhc
Confidence            3343    34566789999998887763321     1         23347788888888743 333321    122235


Q ss_pred             cccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcc
Q 044468          133 MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNL  212 (396)
Q Consensus       133 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  212 (396)
                      +|+++.+..|.+...        +..--....+..+++|+.|+++.+.+.......-...++..+.|+.|.+.+|--...
T Consensus       186 ~lk~vki~qNgIrpe--------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         186 NLKEVKIQQNGIRPE--------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             CceeEEeeecCcCcc--------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence            788888888776542        001113445667788888888888876544444334455555678888877743222


Q ss_pred             cchh---hhh--ccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC
Q 044468          213 LSAF---SFA--SLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA  269 (396)
Q Consensus       213 ~~~~---~l~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  269 (396)
                      -..+   .+.  ..|+|..|....+.+..-.+....-..+.. +..|-|..|.+.||++...
T Consensus       258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~-~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQ-DAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhh-cccHHHHHHHHccCcchhH
Confidence            1111   111  246677776665544332221100001111 2566667777777655553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=4.3e-07  Score=78.38  Aligned_cols=104  Identities=21%  Similarity=0.167  Sum_probs=58.9

Q ss_pred             EEEccCCccCccC--hHHHhcCccccEEEeecCCCCcccc---ccccCCCcCCEEEccCCCCCccchhh-hcCCcccEEe
Q 044468           40 ALFLHSNHLGTVS--NNFFHSMASLRVLIFLYNRSLENLP---LGILNLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLN  113 (396)
Q Consensus        40 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~  113 (396)
                      .|.+.++.+....  ..+-..+.+++.+|+.+| .+....   ..+.++|.|++|+++.|.+...-..+ ...++|++|-
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV  127 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence            4455555553221  223455677888888888 554332   23446777888888777665221122 2456777777


Q ss_pred             cccccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468          114 LEYTFCLSRIPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus       114 l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                      +.+..............+|.+++|+++.|.+
T Consensus       128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            7666444433333355667777777776643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.20  E-value=2.2e-07  Score=88.23  Aligned_cols=195  Identities=23%  Similarity=0.243  Sum_probs=139.0

Q ss_pred             hcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccE
Q 044468           57 HSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRA  136 (396)
Q Consensus        57 ~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~  136 (396)
                      ..+..++.+.+..+ .+..+-..+..+.+|+.+++..+.+..+...+..+++|++|++++| .+..+..  +..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhh
Confidence            46677778888888 6666444577899999999999999988766889999999999998 5665544  778888999


Q ss_pred             EEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchh
Q 044468          137 LRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAF  216 (396)
Q Consensus       137 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  216 (396)
                      |++.+|.+..+               ..+..++.|+.++++++........   . +..+..++.+.+.+........  
T Consensus       145 L~l~~N~i~~~---------------~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~--  203 (414)
T KOG0531|consen  145 LNLSGNLISDI---------------SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG--  203 (414)
T ss_pred             heeccCcchhc---------------cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc--
Confidence            99999988754               5555588888888888887666542   1 2345558888887754433333  


Q ss_pred             hhhccccccceeeeccccceeeeccccccccccccccc--cCcEeEEeCceeecC-CccCCCCCccEEeecccc
Q 044468          217 SFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH--SLQKVYINYSKFRHA-TWLVLAPRAKVIRISNCQ  287 (396)
Q Consensus       217 ~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~l-~~l~~l~~L~~L~l~~~~  287 (396)
                       +..+..+..+++..+.+..+..-       +   ...  +|+.+++.++.+... ..+..++.++.|++.+..
T Consensus       204 -~~~~~~l~~~~l~~n~i~~~~~l-------~---~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  204 -LDLLKKLVLLSLLDNKISKLEGL-------N---ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             -hHHHHHHHHhhcccccceeccCc-------c---cchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence             33334445556666666544321       0   222  389999999977776 567778888888887654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=7.2e-07  Score=77.01  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=15.8

Q ss_pred             CCcCCEEEccCCCCC---ccchhhhcCCcccEEecccc
Q 044468           83 LVSLQHLDLSWTGIT---TLPIELKYLVNLKCLNLEYT  117 (396)
Q Consensus        83 l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~  117 (396)
                      ...++.+|+.+|.++   ++...+.+++.|++|+++.|
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N  107 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN  107 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence            344444455444443   23333444455555555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.08  E-value=2e-06  Score=85.65  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=16.1

Q ss_pred             CCCcCCEEEccCCCCCccchhhhcCCcccEEeccc
Q 044468           82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY  116 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~  116 (396)
                      ++++|..||+++++++.+ .+++++++|++|.+.+
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence            444455555555444444 3444444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.98  E-value=7.5e-07  Score=68.08  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             cccEEEccccccccccCC----CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEE
Q 044468           15 EITRMSLMQNAIQNLTET----PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLD   90 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~   90 (396)
                      .+..+++++|.+-.+++.    ..-.+|...++++|.+.++|+.+..+++.++.+++.+| .+..+|..+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence            344566666655433322    45556777777777777777776666777777777777 7777777777777777777


Q ss_pred             ccCCCCCccchhhhcCCcccEEecccccCCCCCCcc
Q 044468           91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP  126 (396)
Q Consensus        91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~  126 (396)
                      ++.|.+...|+.+..+.+|-.|+..++ -...++.+
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence            777777777777766777777776665 33444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=1.2e-05  Score=49.55  Aligned_cols=14  Identities=43%  Similarity=0.465  Sum_probs=5.1

Q ss_pred             cCCCcCCEEEccCC
Q 044468           81 LNLVSLQHLDLSWT   94 (396)
Q Consensus        81 ~~l~~L~~L~l~~~   94 (396)
                      +++++|++|++++|
T Consensus        21 ~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   21 SNLPNLETLNLSNN   34 (44)
T ss_dssp             TTCTTSSEEEETSS
T ss_pred             hCCCCCCEEEecCC
Confidence            33333333333333

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=2.1e-06  Score=73.28  Aligned_cols=150  Identities=13%  Similarity=0.038  Sum_probs=78.6

Q ss_pred             cCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccch-----hhhhccccccceeeeccccceeeecc
Q 044468          167 ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSA-----FSFASLRHLWTLHLYFNDFEELNIDA  241 (396)
Q Consensus       167 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~i~~l~~~~  241 (396)
                      .-+.|++..+..+.....+.......+....+|+.+.+..+ ++...++     -.+.-+.+|+.|++..|.++..+..+
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            44566666666666554443333322332234666666542 2222211     12345677888888766665433322


Q ss_pred             ccccccccc-cccccCcEeEEeCceeecCC------cc--CCCCCccEEeeccccccceeecccccccchhccccccccc
Q 044468          242 GEVKRIRET-RGFHSLQKVYINYSKFRHAT------WL--VLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF  312 (396)
Q Consensus       242 ~~~~~~~~~-~~~~~L~~L~l~~~~l~~l~------~l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  312 (396)
                      .     ... +..+.|+.|.+..|.++.-.      .+  ...|+|..|.+..+..-..++...++.+.      .....
T Consensus       234 L-----a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~------e~~~~  302 (388)
T COG5238         234 L-----ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF------EQDAV  302 (388)
T ss_pred             H-----HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh------hhccc
Confidence            2     111 24566888888888444311      11  12677777777665544444443333221      34567


Q ss_pred             cCcceeeccCCcccccc
Q 044468          313 GRLEYLILEGLQNLKSI  329 (396)
Q Consensus       313 ~~L~~L~l~~~~~l~~~  329 (396)
                      |-|..|.+.|+ .+++.
T Consensus       303 p~L~~le~ngN-r~~E~  318 (388)
T COG5238         303 PLLVDLERNGN-RIKEL  318 (388)
T ss_pred             HHHHHHHHccC-cchhH
Confidence            88888888776 34443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=5.3e-06  Score=82.75  Aligned_cols=132  Identities=21%  Similarity=0.160  Sum_probs=93.3

Q ss_pred             ccccEEEeecCCCCc-ccccccc-CCCcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCccc
Q 044468           60 ASLRVLIFLYNRSLE-NLPLGIL-NLVSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLR  135 (396)
Q Consensus        60 ~~L~~L~l~~~~~~~-~l~~~l~-~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~  135 (396)
                      .+|++|++++...+. ..|..++ .+|+|+.|.+++-.+.  ++.....++++|..||++++ .+..+ .+ ++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHH
Confidence            579999998874433 3333444 5799999999886554  44455678999999999997 44444 33 88999999


Q ss_pred             EEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhh--ccCCCCCcccceEEecc
Q 044468          136 ALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN--YCNSSRSINTQSLCLRH  206 (396)
Q Consensus       136 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~  206 (396)
                      +|.+.+-.+...            ..+..+-+|++|+.|+++.......+....  ...-..+|+|+.|+.++
T Consensus       199 ~L~mrnLe~e~~------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  199 VLSMRNLEFESY------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHhccCCCCCch------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            999988877764            577888899999999998766544332211  12223367788888875

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.87  E-value=2.2e-06  Score=83.27  Aligned_cols=42  Identities=17%  Similarity=0.144  Sum_probs=25.4

Q ss_pred             ccCcceeeccCCcccccccCCCC--CCCCcceEEeccCcccccC
Q 044468          312 FGRLEYLILEGLQNLKSIHSSYL--PFPRLKEICVWKCAELKKL  353 (396)
Q Consensus       312 ~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~i~~c~~L~~l  353 (396)
                      +..++.|.+..|...........  .+..+..+.+.+|+.+..-
T Consensus       400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             CCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence            33378888888766554333211  1566777777777766553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=2.9e-05  Score=47.77  Aligned_cols=40  Identities=18%  Similarity=0.347  Sum_probs=26.4

Q ss_pred             CCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc
Q 044468           36 PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP   77 (396)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~   77 (396)
                      ++|++|++++|.+.++++. +.+|++|++|++++| .++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCc
Confidence            4677777777777777665 677777777777777 555443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=3.4e-05  Score=63.21  Aligned_cols=124  Identities=21%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             ccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc-CCCcCCEEEccC
Q 044468           16 ITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSW   93 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~L~l~~   93 (396)
                      =+++++.+..+..+... ........+++++|.+..++.  +..++.|..|.+..| .++.+...+. .+++|..|.+.+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence            34555555555554333 344455566666666655443  566666677777766 5555544444 345666676766


Q ss_pred             CCCCccch--hhhcCCcccEEecccccCCCCC--CcchhcCCCcccEEEeecc
Q 044468           94 TGITTLPI--ELKYLVNLKCLNLEYTFCLSRI--PQPVISDLKMLRALRMFEC  142 (396)
Q Consensus        94 ~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~--~~~~i~~l~~L~~L~l~~~  142 (396)
                      |++..+..  .+..+++|++|.+-+|.....-  -.-++..+++|+.|+..+.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            66553322  2455666666666665332221  1122556666666665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=5.2e-05  Score=62.14  Aligned_cols=102  Identities=22%  Similarity=0.328  Sum_probs=84.2

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc--ccccCCCcCCEEEcc
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP--LGILNLVSLQHLDLS   92 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~   92 (396)
                      ....+++++|++..+.....++.|.+|.+.+|.|..+.+..-..+++|..|.+.+| .+..+.  ..+..++.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence            45679999999998877788999999999999999888875566788999999999 666443  236678999999999


Q ss_pred             CCCCCccch----hhhcCCcccEEecccc
Q 044468           93 WTGITTLPI----ELKYLVNLKCLNLEYT  117 (396)
Q Consensus        93 ~~~l~~l~~----~l~~l~~L~~L~l~~~  117 (396)
                      +|.++.-..    .+..+++|++||+.+.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            998875443    3788999999999875

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00015  Score=67.02  Aligned_cols=116  Identities=18%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             cCCCccccEEEccccccccccCCCCCCCCcEEEccCC-ccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468           10 IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      +..++++++|++++|.++.+|..  -.+|+.|.+++| .+..+|.. +  .++|++|++++|..+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccce
Confidence            44578899999999988888742  236899999886 55666654 3  25799999998866666654      4667


Q ss_pred             EEccCCC---CCccchhhhcCCcccEEecccccCCCCCCcchhc-CC-CcccEEEeeccCcc
Q 044468           89 LDLSWTG---ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVIS-DL-KMLRALRMFECGFK  145 (396)
Q Consensus        89 L~l~~~~---l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~-~l-~~L~~L~l~~~~~~  145 (396)
                      |++..+.   +..+|..      |+.|.+.+++.....+   +. .+ ++|++|.+.+|...
T Consensus       117 L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~---lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        117 LEIKGSATDSIKNVPNG------LTSLSINSYNPENQAR---IDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             EEeCCCCCcccccCcch------Hhheeccccccccccc---cccccCCcccEEEecCCCcc
Confidence            7776554   3455543      4445443321111000   11 12 46777777766543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.62  E-value=1.4e-05  Score=77.78  Aligned_cols=109  Identities=24%  Similarity=0.207  Sum_probs=48.2

Q ss_pred             CCCCcEEEccCC-ccCc--cChHHHhcCccccEEEeecC-CCCcccc----ccccCCCcCCEEEccCCC-CCc--cchhh
Q 044468           35 CPHLRALFLHSN-HLGT--VSNNFFHSMASLRVLIFLYN-RSLENLP----LGILNLVSLQHLDLSWTG-ITT--LPIEL  103 (396)
Q Consensus        35 ~~~L~~L~l~~~-~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~l~----~~l~~l~~L~~L~l~~~~-l~~--l~~~l  103 (396)
                      +++|+.|.+..+ .+..  +.. +...+++|+.|+++++ ......+    .....+.+|+.++++++. +++  +....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            555666655555 2322  212 2455666666666552 1111111    112234556666666554 441  11112


Q ss_pred             hcCCcccEEecccccCC-CCCCcchhcCCCcccEEEeeccCc
Q 044468          104 KYLVNLKCLNLEYTFCL-SRIPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus       104 ~~l~~L~~L~l~~~~~~-~~~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                      ..+++|++|.+.+|... +.--..+...+++|++|++.+|..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            23556666665555321 111122233455566666665544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.62  E-value=6.9e-06  Score=62.91  Aligned_cols=86  Identities=26%  Similarity=0.405  Sum_probs=76.5

Q ss_pred             cccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEcc
Q 044468           15 EITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLS   92 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~   92 (396)
                      .|+..++++|.+.++|..  ..++.++.|++.+|.+.++|.+ +..++.|+.++++.| .+...|.-+..+.+|-+|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence            577899999999998776  7788999999999999999999 999999999999999 777778777779999999998


Q ss_pred             CCCCCccchh
Q 044468           93 WTGITTLPIE  102 (396)
Q Consensus        93 ~~~l~~l~~~  102 (396)
                      ++....+|..
T Consensus       132 ~na~~eid~d  141 (177)
T KOG4579|consen  132 ENARAEIDVD  141 (177)
T ss_pred             CCccccCcHH
Confidence            8888777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.25  E-value=0.00081  Score=62.35  Aligned_cols=134  Identities=16%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC-CCCccchhhhcCCcccEE
Q 044468           34 TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT-GITTLPIELKYLVNLKCL  112 (396)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L  112 (396)
                      .+.+++.|++++|.+..+|.  +  -.+|+.|.+++|..++.+|..+  ..+|++|++++| .+..+|.      +|+.|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence            46888888888887777762  1  2358888888876777777544  357888888888 6767764      35566


Q ss_pred             ecccccCCCCCCcchhcCC-CcccEEEeeccCccchhccchhccCCchhhhHhhh-cC-CCCcEEEEEecccchhhhhhh
Q 044468          113 NLEYTFCLSRIPQPVISDL-KMLRALRMFECGFKVEQEADRILFGDSEVLVEELL-AL-KHLNLLTVTLQIFGALQRLLN  189 (396)
Q Consensus       113 ~l~~~~~~~~~~~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~  189 (396)
                      ++.++ ....     ++.+ ++|+.|.+.++....               ...+. .+ +.|+.|.+.++.....+.   
T Consensus       118 ~L~~n-~~~~-----L~~LPssLk~L~I~~~n~~~---------------~~~lp~~LPsSLk~L~Is~c~~i~LP~---  173 (426)
T PRK15386        118 EIKGS-ATDS-----IKNVPNGLTSLSINSYNPEN---------------QARIDNLISPSLKTLSLTGCSNIILPE---  173 (426)
T ss_pred             EeCCC-CCcc-----cccCcchHhheecccccccc---------------ccccccccCCcccEEEecCCCcccCcc---
Confidence            66543 1111     2233 356777765432111               01111 12 578888888766544331   


Q ss_pred             ccCCCCCcccceEEeccc
Q 044468          190 YCNSSRSINTQSLCLRHL  207 (396)
Q Consensus       190 ~~~l~~~~~L~~L~l~~~  207 (396)
                        .++.  +|+.|.+..+
T Consensus       174 --~LP~--SLk~L~ls~n  187 (426)
T PRK15386        174 --KLPE--SLQSITLHIE  187 (426)
T ss_pred             --cccc--cCcEEEeccc
Confidence              2332  3888888653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.00014  Score=62.08  Aligned_cols=104  Identities=28%  Similarity=0.204  Sum_probs=57.0

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecC--CCCccccccccCCCcCCEEEccCCCCCccc--hhhhcCCc
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN--RSLENLPLGILNLVSLQHLDLSWTGITTLP--IELKYLVN  108 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~--~~l~~l~~  108 (396)
                      ..+..|+.|++.+..+..+..  +..+++|++|.++.|  .....++....++++|+++++++|++..+.  ..+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            456666666666665554433  566677777777776  222344433445577777777777665321  12455666


Q ss_pred             ccEEecccccCCCCCC--cchhcCCCcccEEE
Q 044468          109 LKCLNLEYTFCLSRIP--QPVISDLKMLRALR  138 (396)
Q Consensus       109 L~~L~l~~~~~~~~~~--~~~i~~l~~L~~L~  138 (396)
                      |..|++.+|.......  ..++.-+++|.+|+
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            6677776663332111  12233455555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.18  E-value=0.0019  Score=50.35  Aligned_cols=118  Identities=20%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCc
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVS   85 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~   85 (396)
                      .|..+++|+.+.+.. .+..++..  ..+.+|+.+.+..+ +..++...+..++.++.+.+..+  +..++ ..+..+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccc
Confidence            466677777777774 46666554  66777888877664 66666666777777888877543  33333 34555777


Q ss_pred             CCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcc
Q 044468           86 LQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKML  134 (396)
Q Consensus        86 L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L  134 (396)
                      |+.+.+..+ +..++.. +.++ +|+.+.+..+  ...++...+.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            777777553 4444333 4455 6777766542  333444445555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00025  Score=60.65  Aligned_cols=103  Identities=26%  Similarity=0.320  Sum_probs=75.0

Q ss_pred             CccccEEEccccccccccCCCCCCCCcEEEccCC--cc-CccChHHHhcCccccEEEeecCCCCcccc--ccccCCCcCC
Q 044468           13 WKEITRMSLMQNAIQNLTETPTCPHLRALFLHSN--HL-GTVSNNFFHSMASLRVLIFLYNRSLENLP--LGILNLVSLQ   87 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~   87 (396)
                      ...+..+++.+..++++.....+++|+.|.++.|  ++ ..++.. ...+++|+++++++| .+..+.  ..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence            4467777888888888776678899999999999  44 244444 567799999999999 555322  2345778889


Q ss_pred             EEEccCCCCCccch----hhhcCCcccEEecccc
Q 044468           88 HLDLSWTGITTLPI----ELKYLVNLKCLNLEYT  117 (396)
Q Consensus        88 ~L~l~~~~l~~l~~----~l~~l~~L~~L~l~~~  117 (396)
                      .|++.+|..+.+-.    .+.-+++|++|+-...
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            99999987664322    3556889999987664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=3.4e-05  Score=66.31  Aligned_cols=100  Identities=25%  Similarity=0.253  Sum_probs=54.7

Q ss_pred             CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccch--hhhcCCcccEE
Q 044468           35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPI--ELKYLVNLKCL  112 (396)
Q Consensus        35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L  112 (396)
                      +.+.+.|++.+|.+.+|.-  ..+++.|++|.++-| .++.+.+ +..+++|+.|.|+.|.|..+.+  .+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3455556666666665532  566666666666666 5554432 4556666666666666654432  35566666666


Q ss_pred             ecccccCCCCCC----cchhcCCCcccEEE
Q 044468          113 NLEYTFCLSRIP----QPVISDLKMLRALR  138 (396)
Q Consensus       113 ~l~~~~~~~~~~----~~~i~~l~~L~~L~  138 (396)
                      .+..|.-.+.-+    ..++.-+++|+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            665543222222    12344556666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=6.7e-05  Score=64.54  Aligned_cols=99  Identities=22%  Similarity=0.254  Sum_probs=77.8

Q ss_pred             CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc--cccCCCcCCEE
Q 044468           12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL--GILNLVSLQHL   89 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~l~~l~~L~~L   89 (396)
                      .+.+++.|++.+++++++.-...++.|.+|.++-|+|..+.+  +..|.+|+.|.+..| .+..+.+  -+.++++|+.|
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence            356788899999999987655889999999999999988866  899999999999999 6665543  45689999999


Q ss_pred             EccCCCCC--ccc----hhhhcCCcccEEe
Q 044468           90 DLSWTGIT--TLP----IELKYLVNLKCLN  113 (396)
Q Consensus        90 ~l~~~~l~--~l~----~~l~~l~~L~~L~  113 (396)
                      -|..|...  .-+    ..+.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99877433  222    2356788888886

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.0003  Score=57.81  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=33.8

Q ss_pred             hhhccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-eeec--CCccCCCCCccEEeeccccc
Q 044468          217 SFASLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS-KFRH--ATWLVLAPRAKVIRISNCQR  288 (396)
Q Consensus       217 ~l~~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--l~~l~~l~~L~~L~l~~~~~  288 (396)
                      .+..++.++.|.+. |..+.+..++..+.       ..++|+.|+|++| ++|+  +.++..+++|+.|.|.+.+.
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            34444555555555 55555544433322       4556666666666 5555  44555555565555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.86  E-value=0.028  Score=43.62  Aligned_cols=102  Identities=18%  Similarity=0.309  Sum_probs=44.6

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccch-hhhcCCccc
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLK  110 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~  110 (396)
                      .++.+|+.+.+.. .+..+....|..+..|+.+.+..+  +..++ ..+.++++++.+.+.. .+..++. .+..+++|+
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            4566666666654 355555555666666777776554  33333 3345555667776654 3333333 244566666


Q ss_pred             EEecccccCCCCCCcchhcCCCcccEEEeec
Q 044468          111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFE  141 (396)
Q Consensus       111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~  141 (396)
                      .+++..+  ...++...+..+ +++.+.+..
T Consensus        85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            6666542  233333335555 666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.20  E-value=0.0076  Score=30.74  Aligned_cols=9  Identities=33%  Similarity=0.121  Sum_probs=3.7

Q ss_pred             ccEEEeecC
Q 044468           62 LRVLIFLYN   70 (396)
Q Consensus        62 L~~L~l~~~   70 (396)
                      |++|++++|
T Consensus         2 L~~Ldls~n   10 (22)
T PF00560_consen    2 LEYLDLSGN   10 (22)
T ss_dssp             ESEEEETSS
T ss_pred             ccEEECCCC
Confidence            334444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.76  E-value=0.022  Score=26.94  Aligned_cols=17  Identities=29%  Similarity=0.526  Sum_probs=9.5

Q ss_pred             CCcceEEeccCcccccCC
Q 044468          337 PRLKEICVWKCAELKKLP  354 (396)
Q Consensus       337 ~~L~~L~i~~c~~L~~lp  354 (396)
                      ++|+.|++++|. |+++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467777777775 77766

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.33  E-value=0.023  Score=47.02  Aligned_cols=82  Identities=20%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             ccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCccc
Q 044468          134 LRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLL  213 (396)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  213 (396)
                      ++.++.+++.+..+             .+..+..++.++.+.+.....-....+..+..  -.++|+.|.+++|..++..
T Consensus       103 IeaVDAsds~I~~e-------------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  103 IEAVDASDSSIMYE-------------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             EEEEecCCchHHHH-------------HHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechh
Confidence            56667677666553             66677777777777766555433333333333  3455888888888888888


Q ss_pred             chhhhhccccccceeee
Q 044468          214 SAFSFASLRHLWTLHLY  230 (396)
Q Consensus       214 ~~~~l~~~~~L~~L~l~  230 (396)
                      .+..+..+++|+.|++.
T Consensus       168 GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  168 GLACLLKLKNLRRLHLY  184 (221)
T ss_pred             HHHHHHHhhhhHHHHhc
Confidence            87777778888888876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.30  E-value=0.022  Score=28.99  Aligned_cols=18  Identities=39%  Similarity=0.610  Sum_probs=9.4

Q ss_pred             CCEEEccCCCCCccchhh
Q 044468           86 LQHLDLSWTGITTLPIEL  103 (396)
Q Consensus        86 L~~L~l~~~~l~~l~~~l  103 (396)
                      |++|++++|.++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.48  E-value=0.39  Score=25.33  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=12.3

Q ss_pred             CCCcEEEccCCccCccChHH
Q 044468           36 PHLRALFLHSNHLGTVSNNF   55 (396)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~   55 (396)
                      ++|+.|++++|.+..+|.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.48  E-value=0.39  Score=25.33  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=12.3

Q ss_pred             CCCcEEEccCCccCccChHH
Q 044468           36 PHLRALFLHSNHLGTVSNNF   55 (396)
Q Consensus        36 ~~L~~L~l~~~~~~~~~~~~   55 (396)
                      ++|+.|++++|.+..+|.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.85  E-value=0.45  Score=25.11  Aligned_cols=19  Identities=37%  Similarity=0.524  Sum_probs=11.3

Q ss_pred             CcCCEEEccCCCCCccchh
Q 044468           84 VSLQHLDLSWTGITTLPIE  102 (396)
Q Consensus        84 ~~L~~L~l~~~~l~~l~~~  102 (396)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666665544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.85  E-value=0.45  Score=25.11  Aligned_cols=19  Identities=37%  Similarity=0.524  Sum_probs=11.3

Q ss_pred             CcCCEEEccCCCCCccchh
Q 044468           84 VSLQHLDLSWTGITTLPIE  102 (396)
Q Consensus        84 ~~L~~L~l~~~~l~~l~~~  102 (396)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666665544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.87  E-value=0.29  Score=25.93  Aligned_cols=17  Identities=24%  Similarity=0.604  Sum_probs=11.1

Q ss_pred             CCCcceEEeccCccccc
Q 044468          336 FPRLKEICVWKCAELKK  352 (396)
Q Consensus       336 ~~~L~~L~i~~c~~L~~  352 (396)
                      +++|+.|++++|+.+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            45677777777766654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.71  E-value=0.019  Score=48.51  Aligned_cols=83  Identities=19%  Similarity=0.095  Sum_probs=48.7

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL  112 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L  112 (396)
                      ..++..+.|+++.+.+..+... |+.+..+..|+++.+ .+..+|..++....++++++..|..+..|.+.+..++++++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            4455556666666654444333 555555666666665 55556666666666666666556666666666666666666


Q ss_pred             ecccc
Q 044468          113 NLEYT  117 (396)
Q Consensus       113 ~l~~~  117 (396)
                      +.-++
T Consensus       117 e~k~~  121 (326)
T KOG0473|consen  117 EQKKT  121 (326)
T ss_pred             hhccC
Confidence            65554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.09  E-value=0.029  Score=47.49  Aligned_cols=95  Identities=21%  Similarity=0.097  Sum_probs=77.4

Q ss_pred             CccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchh
Q 044468           49 GTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVI  128 (396)
Q Consensus        49 ~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i  128 (396)
                      +++|---+..+...++||++.+ .+..+-..+.-++.|..|+++.+.+..+|...+....++.++...| .....|.. .
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~  107 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-Q  107 (326)
T ss_pred             cccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-c
Confidence            4555333788889999999999 6666666677788899999999999999999999988999988776 56677887 8


Q ss_pred             cCCCcccEEEeeccCccc
Q 044468          129 SDLKMLRALRMFECGFKV  146 (396)
Q Consensus       129 ~~l~~L~~L~l~~~~~~~  146 (396)
                      +..+.+++++..++.+..
T Consensus       108 ~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cccCCcchhhhccCcchH
Confidence            899999999988887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	396
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.1 bits (216), Expect = 7e-19
 Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 33/284 (11%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHS 58
                  P  G+  E   + L +N I+ L +    + PHL  L L+ N +  V    F++
Sbjct: 20  RKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78

Query: 59  MASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEY 116
           + +LR L    NR L+ +PLG+   L +L  LD+S   I  L   + + L NLK L +  
Sbjct: 79  LFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 117 TFCLSRIPQPVISDLKMLRALRMFECGF-KVEQEADRILFGDSEVLVEELLALKHLNLLT 175
              L  I     S L  L  L + +C    +  EA          L+   L L+HLN+  
Sbjct: 138 ND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA----LSHLHGLIV--LRLRHLNINA 190

Query: 176 VTLQIFGALQRL----LNYCNSSRSINTQSLCLRHL-------NNSNLLSAFSFASLRHL 224
           +    F  L RL    +++     ++    L   +L        N   +   +   L +L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 225 WTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH 268
             L+L +N    +                  LQ++ +   +   
Sbjct: 251 RFLNLSYNPISTIEGSM--------LHELLRLQEIQLVGGQLAV 286

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 44/200 (22%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTG 95
             L  L L   ++  + +  F  +  L+VL   +   L+ +    L  ++L  L ++   
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 96  ITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRIL 154
           +T +P   +++LV L+ LNL Y   +S I   ++ +L  L+ ++                
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQ---------------- 278

Query: 155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLS 214
                        L    L  V    F  L  L            + L +   N    L 
Sbjct: 279 -------------LVGGQLAVVEPYAFRGLNYL------------RVLNVSG-NQLTTLE 312

Query: 215 AFSFASLRHLWTLHLYFNDF 234
              F S+ +L TL L  N  
Sbjct: 313 ESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 35/263 (13%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
           T++ + +N I  L +       +L++L +  N L  +S+  F  + SL  L       L 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LT 165

Query: 75  NLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
           ++P   L +L  L  L L    I  +     K L  LK L + + +       P      
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH-WPYLDTMTPNCLYGL 224

Query: 133 MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCN 192
            L +L +  C          +       L    L L +  + T+   +   L RL     
Sbjct: 225 NLTSLSITHCNLT---AVPYLAVRHLVYL--RFLNLSYNPISTIEGSMLHELLRL----- 274

Query: 193 SSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRG 252
                  Q + L       ++  ++F  L +L  L++  N    L               
Sbjct: 275 -------QEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH--------S 318

Query: 253 FHSLQKVYINYSKFR---HATWL 272
             +L+ + ++ +         W+
Sbjct: 319 VGNLETLILDSNPLACDCRLLWV 341

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 53/351 (15%), Positives = 110/351 (31%), Gaps = 44/351 (12%)

Query: 16  ITRMSLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
           IT ++L  N ++ L          L +L +  N +  +       +  L+VL   +N  L
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-L 85

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
             L         +L  L L    I  +         NL  L+L +   LS         L
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQL 144

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYC 191
           + L+ L +     +  +  +  +F +S +     L L    +   +   F A+ RL    
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKK---LELSSNQIKEFSPGCFHAIGRL---- 197

Query: 192 NSSRSINTQSLCLRH--LNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRE 249
                     L L +  L  S         +   +  L L  +     +           
Sbjct: 198 --------FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF------L 243

Query: 250 TRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDN 308
              + +L  + ++Y+         +   +     +   +L+   +    +  + +  +  
Sbjct: 244 GLKWTNLTMLDLSYNNLNV-----VGNDS----FAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 309 LILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQ 359
           L     + YL L   ++      S    P++ +        L+ L ++ N 
Sbjct: 295 L---FNVRYLNL--KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 57/378 (15%), Positives = 116/378 (30%), Gaps = 60/378 (15%)

Query: 14  KEITRMSLMQNAIQNLTETP----TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLY 69
             I  +SL  + +   + T        +L  L L  N+L  V N+ F  +  L      Y
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 70  NRSLENLPLGILNLVSLQHLDL---------SWTGITTL-PIELKYLVNLKCLNLEYTFC 119
           N         +  L ++++L+L         S   +  +     ++L  L+ LN+E    
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND- 340

Query: 120 LSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL-----L 174
           +  I   + + L  L+ L +      +    +      +         L  LNL      
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA------HSPLHILNLTKNKIS 394

Query: 175 TVTLQIFGALQRL----LNYCNSSRSINTQSLC----LRHLN-NSNLLSAF---SFASLR 222
            +    F  L  L    L      + +  Q       +  +  + N        SFA + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 223 HLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIR 282
            L  L L     + ++      +         +L  + ++ +   +     +        
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQ------PLRNLTILDLSNNNIAN-----INDDM---- 499

Query: 283 ISNCQRLQEI-ISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKE 341
           +   ++L+ + +    L  +                  L+GL +L  ++     F  +  
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGP------IYFLKGLSHLHILNLESNGFDEIPV 553

Query: 342 ICVWKCAELKKLPLDCNQ 359
                  ELK + L  N 
Sbjct: 554 EVFKDLFELKIIDLGLNN 571

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 66/317 (20%), Positives = 112/317 (35%), Gaps = 35/317 (11%)

Query: 35  CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSW 93
           C +L  L L SN +  + NN F    +L  L   +N  L +  LG    L +LQ L LS 
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSN 154

Query: 94  TGITTLP---IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEA 150
             I  L    +++    +LK L L     +          +  L  L +           
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 151 DRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS 210
              L   +  +    L+L +  L T +   F  L          +  N   L L + NN 
Sbjct: 214 KLCLELANTSIRN--LSLSNSQLSTTSNTTFLGL----------KWTNLTMLDLSY-NNL 260

Query: 211 NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT 270
           N++   SFA L  L    L +N+ + L   +          G  +++ + +  S  + + 
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--------LHGLFNVRYLNLKRSFTKQSI 312

Query: 271 WLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGRLEYLILEG----LQN 325
            L   P+         + L+ + +    +  I + +   LI    L+YL L      L+ 
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI---NLKYLSLSNSFTSLRT 369

Query: 326 LKSIHSSYLPFPRLKEI 342
           L +     L    L  +
Sbjct: 370 LTNETFVSLAHSPLHIL 386

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 27/217 (12%)

Query: 35  CPHLRALFLHSNHL-GTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLS 92
             HL  L L  N +   ++   +  + ++  +   YN+    L       + SLQ L L 
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLR 462

Query: 93  W---TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQE 149
                 + + P   + L NL  L+L     ++ I   ++  L+ L  L +         +
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 150 ADRILFGDSEVLVEELLALKHLNL-----LTVTLQIFGALQRLLNYCNSSRSINTQSLCL 204
                 G     ++ L  L  LNL       + +++F  L  L            + + L
Sbjct: 522 --HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL------------KIIDL 567

Query: 205 RHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
              NN N L A  F +   L +L+L  N    +    
Sbjct: 568 GL-NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 47/245 (19%), Positives = 80/245 (32%), Gaps = 36/245 (14%)

Query: 16  ITRMSLMQNAIQNLTETP----TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
           +  + L  N IQ L            L+ L L SN +   S   FH++  L  L     +
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 72  SLENLPLGI---LNLVSLQHLDLSWTGITTLP---IELKYLVNLKCLNLEYTFCLSRIPQ 125
              +L   +   L   S+++L LS + ++T            NL  L+L Y   L+ +  
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGN 265

Query: 126 PVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQ 185
              + L  L    +     +                +  L  +++LNL         +  
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQ----------HLFSHSLHGLFNVRYLNLK-------RSFT 308

Query: 186 RLLNYCNSSRSINTQSLC----LRHLN-NSNLLS---AFSFASLRHLWTLHLYFNDFEEL 237
           +      S   I+  S      L HLN   N +    +  F  L +L  L L  +     
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 238 NIDAG 242
            +   
Sbjct: 369 TLTNE 373

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 19/140 (13%)

Query: 20  SLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNN--------FFHSMASLRVLIFLY 69
            L  N I N+ +        L  L L  N+L  +  +        F   ++ L +L    
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 70  NRSLENLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPV 127
           N   + +P+ +  +L  L+ +DL    + TLP       V+LK LNL+    ++ + + V
Sbjct: 546 NG-FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKV 603

Query: 128 ISD-LKMLRALRM----FEC 142
                + L  L M    F+C
Sbjct: 604 FGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 34/163 (20%), Positives = 53/163 (32%), Gaps = 31/163 (19%)

Query: 84  VSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECG 143
           VS +  D S   +T +P +L    N+  LNL +   L R+P    +    L +L +    
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT 60

Query: 144 FKVEQEADRILFGDSEVLVEELLALKHLNL-----LTVTLQIFGALQRLLNYCNSSRSIN 198
               +     L          L  LK LNL       ++ + F     L           
Sbjct: 61  ISKLEPE---LCQK-------LPMLKVLNLQHNELSQLSDKTFAFCTNL----------- 99

Query: 199 TQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
              L L   N+   +    F   ++L TL L  N      +  
Sbjct: 100 -TELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 57/325 (17%), Positives = 108/325 (33%), Gaps = 55/325 (16%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
           +  + L  N I  +       C +L+ L L S+ + T+  + F+S+ SL  L    N  L
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-L 86

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISD 130
            +L       L SL++L+L      TL +      L NL+ L +      S I +   + 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY 190
           L  L  L                              +K L+L     Q   +++ +   
Sbjct: 147 LTSLNELE-----------------------------IKALSLRNYQSQSLKSIRDI--- 174

Query: 191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRET 250
                      L L HL+ S  L       L  +  L L   +          V  +   
Sbjct: 175 ---------HHLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV--- 221

Query: 251 RGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLI 310
                ++K+    S     ++  L  +     +   +   +  ++  LG+ +    D + 
Sbjct: 222 --SSPMKKLAFRGSVLTDESFNEL-LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 311 LFGRLEYLILEGLQNLKSIHSSYLP 335
             G++E + +  L ++   +  Y  
Sbjct: 279 ELGKVETVTIRRL-HIPQFYLFYDL 302

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 42/262 (16%), Positives = 80/262 (30%), Gaps = 51/262 (19%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
           I R+ + Q  +     T       ++ + + ++ +  V  +F   + SL  L    N  +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-M 346

Query: 74  ENLPLG----ILNLVSLQHLDLSWTGITTLPIE---LKYLVNLKCLNLEYTFCLSRIPQP 126
               L          SLQ L LS   + ++      L  L NL  L++        +P  
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP-D 404

Query: 127 VISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQR 186
                + +R L                              L    +  V   I   L+ 
Sbjct: 405 SCQWPEKMRFLN-----------------------------LSSTGIRVVKTCIPQTLEV 435

Query: 187 LLNYCNSSRSINTQSLCLRHLN-NSNLLSAF-SFASLRHLWTLHLYFNDFEELNIDAGEV 244
           L    N+  S +     L+ L  + N L      +    L  + +  N  + +       
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGI--- 492

Query: 245 KRIRETRGFHSLQKVYINYSKF 266
                     SLQK++++ + +
Sbjct: 493 -----FDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 43/232 (18%)

Query: 14  KEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTV---SNNFFHSMASLRVLIFL 68
           +++ R+++  + +  +  +       L  L L  N +      ++    +  SL+ L+  
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 69  YNR--SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP 126
            N   S++     +L L +L  LD+S      +P   ++   ++ LNL  T  +  +   
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC 428

Query: 127 VISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQIFG 182
           +    + L  L +                         L  L+ L +    L  TL    
Sbjct: 429 I---PQTLEVLDVSNNNLD--------------SFSLFLPRLQELYISRNKLK-TLPDAS 470

Query: 183 ALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF 234
               L              + +   N    +    F  L  L  + L+ N +
Sbjct: 471 LFPVL------------LVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 27/214 (12%), Positives = 63/214 (29%), Gaps = 18/214 (8%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN-LVSLQHLDLSWT 94
             L  L + +  L    +    S+  +  L    +     L     + L S+++L+L  T
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDT 206

Query: 95  GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRIL 154
            +         +  +     +  F  S +     ++L  L    +     + +      L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLC----LRHL--- 207
              +    + +  L  +  +T        ++RL           +        ++ +   
Sbjct: 267 GDFNPSESDVVSELGKVETVT--------IRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 208 -NNSNLLSAFSFASLRHLWTLHLYFNDFEELNID 240
            +   L+       L+ L  L L  N   E  + 
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 18/240 (7%)

Query: 20  SLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVS-NNFFHSMASLRVLIFLYNRSLENL 76
             ++  + +L   P      L+ L +  N + +     +F ++ +L  +   YN  ++ +
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTI 168

Query: 77  PLGIL-----NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            +  L     N      LD+S   I  +  +    + L  L L   F  S I +  + +L
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 132 KMLRALRMFECGFKVEQEADRI---LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL- 187
             L   R+    FK E+  +     +      +  +   L + N  +  +  F  L  + 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 188 ---LNYCN-SSRSINTQSLCLRHLN-NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAG 242
              L   +        +    + L+     L  F    L  L +L L  N          
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 42/293 (14%), Positives = 91/293 (31%), Gaps = 29/293 (9%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
              + L  N ++ L          L+ L L    + T+ +  +H +  L  LI   N  +
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-I 92

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSRIPQP-VISD 130
           ++   G    L SL++L    T + +L    +  L+ LK LN+ + F +     P   S+
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSN 151

Query: 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEEL------------LALKHLNLLTVTL 178
           L  L  + +     +     D     ++  +   L             A + + L  +TL
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 179 ----QIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF 234
                    ++  L                +   N  +        L  +          
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 235 EELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQ 287
            + + D  +           ++  + +     ++   +    + + + I  CQ
Sbjct: 272 NDFSDDIVKF------HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ 318

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 52/278 (18%), Positives = 86/278 (30%), Gaps = 47/278 (16%)

Query: 20  SLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR--SLENLP 77
           S+++  ++        P L++L L  N           ++ SL  L    N         
Sbjct: 313 SIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCS 369

Query: 78  LGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP-VISDLKMLRA 136
              L   SL+HLDLS+ G   +      L  L+ L+ +++  L R+ +      L+ L  
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLY 428

Query: 137 LRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL------LTVTLQIFGALQRL--- 187
           L +     K++   D I  G        L +L  L +            +F     L   
Sbjct: 429 LDISYTNTKIDF--DGIFLG--------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 188 -LNYCNSSRSINTQSL----CLRHLN-NSNLLSAF---SFASLRHLWTLHLYFNDFEELN 238
            L+       I+         L+ LN + N L       +  L  L TL   FN  E   
Sbjct: 479 DLSK-CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 239 IDAGEVKRIRETRGFHSLQKVYINYSKFR---HATWLV 273
                           SL    +  +           +
Sbjct: 538 GILQ--------HFPKSLAFFNLTNNSVACICEHQKFL 567

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 34/258 (13%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             ++ MSL   +I+ L + P     ++L +    L          +  L+ L    N+  
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKG- 340

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLP---IELKYLVNLKCLNLEYTFCLSRIPQPVISD 130
            ++    + L SL +LDLS   ++             +L+ L+L  +F  + I       
Sbjct: 341 -SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL--SFNGAIIMSANFMG 397

Query: 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY 190
           L+ L+ L        +++  +   F   E L+   L + + N       IF  L  L   
Sbjct: 398 LEELQHLDFQHS--TLKRVTEFSAFLSLEKLLY--LDISYTNTKIDFDGIFLGLTSL--- 450

Query: 191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRET 250
                     +L +   +  +   +  FA+  +L  L L     E+++            
Sbjct: 451 ---------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV--------F 493

Query: 251 RGFHSLQKVYINYSKFRH 268
              H LQ + ++++    
Sbjct: 494 DTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 39/186 (20%)

Query: 66  IFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIP 124
               ++ L  +P  I +  S +++DLS+  +  L          L+ L+L     +  I 
Sbjct: 16  YQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIE 72

Query: 125 QPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGAL 184
                 L  L  L +             I           L +L++L             
Sbjct: 73  DKAWHGLHHLSNLILTGN---------PIQSFSPGSF-SGLTSLENLVA----------- 111

Query: 185 QRLLNYCNSSRSINTQSLC----LRHLN-NSNLLSAF----SFASLRHLWTLHLYFNDFE 235
                      S+ +  +     L+ LN   N + +      F++L +L  + L +N  +
Sbjct: 112 -----VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 236 ELNIDA 241
            + ++ 
Sbjct: 167 TITVND 172

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 56/266 (21%), Positives = 94/266 (35%), Gaps = 34/266 (12%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHS 58
             GL+  P+ G+      ++LM+N IQ +         HL  L L  N +  +    F+ 
Sbjct: 63  RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121

Query: 59  MASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY 116
           +ASL  L    N  L  +P G    L  L+ L L    I ++P      + +L  L+L  
Sbjct: 122 LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 117 TFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTV 176
              L  I +     L  L+ L +  C  K               L E  L +   +   +
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEE--LEMSGNHFPEI 233

Query: 177 TLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEE 236
               F  L  L            + L + + +  +L+   +F  L  L  L+L  N+   
Sbjct: 234 RPGSFHGLSSL------------KKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 237 LNIDAGEVKRIRETRGFHSLQKVYIN 262
           L  D               L +++++
Sbjct: 281 LPHDLFT--------PLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 50/307 (16%), Positives = 87/307 (28%), Gaps = 76/307 (24%)

Query: 34  TC-PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDL 91
           +C      +      L  V      +   L     L   +++ +      +L  L+ L L
Sbjct: 51  SCSNQFSKVVCTRRGLSEVPQGIPSNTRYL----NLMENNIQMIQADTFRHLHHLEVLQL 106

Query: 92  SWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEA 150
               I  + +     L +L  L L   + L+ IP      L  LR L +           
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-------- 157

Query: 151 DRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS 210
                                 + ++    F  +  L              L L  L   
Sbjct: 158 ---------------------PIESIPSYAFNRVPSL------------MRLDLGELKKL 184

Query: 211 NLLSAFSFASLRHLWTLHLYFNDF------------EELNIDAGEVKRIRET--RGFHSL 256
             +S  +F  L +L  L+L   +             EEL +       IR     G  SL
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 257 QKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGRL 315
           +K+++  S+        +   A          L E+ ++   L  +  ++   L     L
Sbjct: 245 KKLWVMNSQVSL-----IERNA----FDGLASLVELNLAHNNLSSLPHDLFTPL---RYL 292

Query: 316 EYLILEG 322
             L L  
Sbjct: 293 VELHLHH 299

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 9e-14
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 20/242 (8%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
              + L  N +++L      + P L+ L L    + T+ +  + S++ L  LI   N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSRIPQP-VISD 130
           ++L LG    L SLQ L    T + +L    + +L  LK LN+ +   +     P   S+
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN 147

Query: 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEEL------------LALKHLNLLTVTL 178
           L  L  L +     +     D  +     +L   L             A K + L  +TL
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 179 Q-IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
           +  F +L  +         +    L L    N   L  F  ++L  L  L +       L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 238 NI 239
           + 
Sbjct: 268 DY 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 25/231 (10%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NL 83
            N  + P       + L L  N L  + +  F S   L+VL       ++ +  G   +L
Sbjct: 17  LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSL 75

Query: 84  VSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142
             L  L L+   I +L +     L +L+ L    T  L+ +    I  LK L+ L +   
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN 134

Query: 143 GFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYC----------- 191
             +  +  +   F +   L  E L L    + ++       L ++               
Sbjct: 135 LIQSFKLPE--YFSNLTNL--EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 192 ----NSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELN 238
                + + I    L LR+  +S  +       L  L    L   +F    
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 47/268 (17%), Positives = 83/268 (30%), Gaps = 44/268 (16%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           +              + L+               L+ L   SN  G   +     + SL 
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNAFS--EVDLPSLE 350

Query: 64  VLIFLYNR--SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLS 121
            L    N                SL++LDLS+ G+ T+      L  L+ L+ +++  L 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LK 409

Query: 122 RIPQP-VISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTV 176
           ++ +  V   L+ L  L +                  + +    L +L+ L +       
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHT---------HTRVAFNGIF-NGLSSLEVLKMAGNSFQE 459

Query: 177 TLQ--IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF 234
                IF  L+ L              L L        LS  +F SL  L  L++  N  
Sbjct: 460 NFLPDIFTELRNL------------TFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 235 EELNIDAGEVKRIRETRGFHSLQKVYIN 262
           + +                 SLQK++++
Sbjct: 507 KSVPDGI--------FDRLTSLQKIWLH 526

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 55/314 (17%), Positives = 92/314 (29%), Gaps = 62/314 (19%)

Query: 15  EITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRS 72
            +  + L  N I  ++ +    C +L+AL L SN + T+  + F S+ SL  L   YN  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 111

Query: 73  LENLPLGIL-NLVSLQHLDLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIPQPVIS 129
           L NL       L SL  L+L      TL       +L  L+ L +      ++I +   +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN 189
            L  L  L +                                +L +   +   ++Q +  
Sbjct: 172 GLTFLEELEIDAS-----------------------------DLQSYEPKSLKSIQNV-- 200

Query: 190 YCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRE 249
                       L L H+    LL          +  L L   D +  +           
Sbjct: 201 ----------SHLIL-HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 250 TRGFHSLQKVYINYSKFRH-ATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDN 308
                + + V I           L        +  S  Q          L  +   + D 
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ----------LKSVPDGIFDR 299

Query: 309 LILFGRLEYLILEG 322
           L     L+ + L  
Sbjct: 300 L---TSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 25/225 (11%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVS-NNFFHSMASLRVLIFLYNRSL 73
             + L  N + NL+ +       L  L L  N   T+   + F  +  L++L      + 
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
             +       L  L+ L++  + + +   + LK + N+  L L        + +  +   
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVT 221

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYC 191
             +  L + +        ++      S      L+       + +T +    + +LLN  
Sbjct: 222 SSVECLELRDTDLDTFHFSEL-----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276

Query: 192 NSSRSINTQSLCLRHLN-NSNLLSAFS---FASLRHLWTLHLYFN 232
           +           L  L  + N L +     F  L  L  + L+ N
Sbjct: 277 SG----------LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 50/280 (17%)

Query: 10  IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLY 69
           +    ++  +  + N +++L    T   L  L L  N +  +  +F      +  L F +
Sbjct: 569 LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 70  NRSLENLP--LGILNLVSLQHLDLSWTGITTLPIEL------KYLVNLKCLNLEYTFCLS 121
           N+ L+ +P      ++  +  +D S+  I +    +         +N   + L Y   + 
Sbjct: 629 NK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQ 686

Query: 122 RIPQPVISDLKMLRALRMFECGFK-VEQEADRILFG---------------------DSE 159
           + P  + +    +  + +       + + + +   G                       +
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 160 VLVEELLALKHLNL-------LTVTLQIFGALQRLLNYCNSSRSINTQ------SLC--- 203
                L  L ++++                 L+            N         +    
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 204 -LRHLN-NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
            L  L   SN +          L+ L +  N    +++ +
Sbjct: 807 SLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTS 846

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 36/350 (10%), Positives = 90/350 (25%), Gaps = 62/350 (17%)

Query: 28  NLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ 87
             T                         + ++  L  +      ++  LP  + +L  LQ
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 88  HLDLS----------WTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPV-ISDLKMLRA 136
            L+++              T L  +      ++   + Y   L   P    +  +  L  
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGL 577

Query: 137 LRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRS 196
           L       +  +      FG +  L +  L L +  +  +         ++         
Sbjct: 578 LDCVHNKVRHLEA-----FGTNVKLTD--LKLDYNQIEEIPEDFCAFTDQV--------- 621

Query: 197 INTQSLCLRHLNN-SNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHS 255
              + L   H N    + + F+  S+  + ++   +N       +        +     +
Sbjct: 622 ---EGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC---SMDDYKGIN 674

Query: 256 LQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGR 314
              V ++Y++ +                +    +  I +S   +  I    +        
Sbjct: 675 ASTVTLSYNEIQK-----FPTEL----FATGSPISTIILSNNLMTSIPENSLKPKD---- 721

Query: 315 LEYLILEGLQNLKSIHSSY-----LPFPRLKEICVWKCAELKKLPLDCNQ 359
                 +    L +I   +     L      +        L  + +  N 
Sbjct: 722 ---GNYKNTYLLTTIDLRFNKLTSLS----DDFRATTLPYLSNMDVSYNC 764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 25/226 (11%)

Query: 17  TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL 76
            RM   +  +           L+     +  +  +  +   S+   ++   L NR +  +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN-LTNR-ITFI 440

Query: 77  PLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRA 136
              I  L  LQ +  + +  T   I +    + +  N +Y            S+LK L  
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAV----DWEDANSDYAKQYENEE-LSWSNLKDLTD 495

Query: 137 LRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRS 196
           + ++ C                  L + L  L  L  L +      +  +L         
Sbjct: 496 VELYNCPN-------------MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 197 INTQSLCLRHLN-NSNLLSAF----SFASLRHLWTLHLYFNDFEEL 237
                  ++      N L  F    S   +  L  L    N    L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 37/252 (14%), Positives = 72/252 (28%), Gaps = 39/252 (15%)

Query: 24  NAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR-SLENLPLGILN 82
           +AI  LT       L+ L   ++        F     +  +     +R  +    + +  
Sbjct: 341 DAIGQLT------ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394

Query: 83  LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTF------CLSRIPQPVISDLKMLRA 136
              L   DL    I   P E+K +     ++L+ T        ++ I    I  L  L+ 
Sbjct: 395 DQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNRITFIS-KAIQRLTKLQI 452

Query: 137 LRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRS 196
           +      F            D+  +  E     +          +  L+ L         
Sbjct: 453 IYFANSPFT----------YDNIAVDWEDANSDYAKQYENEELSWSNLKDL--------- 493

Query: 197 INTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRET-RGFHS 255
                + L +  N   L       L  L +L++  N          +  R+ +       
Sbjct: 494 ---TDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 256 LQKVYINYSKFR 267
           +Q  Y+ Y+   
Sbjct: 550 IQIFYMGYNNLE 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 40/328 (12%), Positives = 83/328 (25%), Gaps = 44/328 (13%)

Query: 46  NHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIEL-K 104
           +  G        +   +  L      +   +P  I  L  L+ L       T        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 105 YLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE 164
             +                 +  +   + L    + +       E   I         + 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK-------DS 421

Query: 165 LLALKHLNLLTVTLQI------FGALQRL----LNYCNSSRSINTQSLCLRHLNNSNLLS 214
            ++LK   +  +T +I         L +L          +           + + +    
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 215 AF--SFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWL 272
               S+++L+ L  + LY      +      +  +        LQ + I  ++   A  L
Sbjct: 482 NEELSWSNLKDLTDVELYNCPN--MTQLPDFLYDLP------ELQSLNIACNRGISAAQL 533

Query: 273 VLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHS 331
                          ++Q   +    L E  A                L+ +  L  +  
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA-------------SLQKMVKLGLLDC 580

Query: 332 SYLPFPRLKEICVWKCAELKKLPLDCNQ 359
            +     L+        +L  L LD NQ
Sbjct: 581 VHNKVRHLEAFG--TNVKLTDLKLDYNQ 606

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 23/173 (13%), Positives = 51/173 (29%), Gaps = 19/173 (10%)

Query: 69  YNRSLENLPLGILNLVSLQHLDLSWTGITT-LPIELKYLVNLKCLNLEYTFCLSRIPQPV 127
            +   +   + + N   +  L L+  G    +P  +  L  LK L+       +   +  
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLF 366

Query: 128 ISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL 187
             +                E+   RI     ++ ++    L   +LL        A+ R 
Sbjct: 367 GDEELTPDMS---------EERKHRIRMHYKKMFLDYDQRLNLSDLLQD------AINRN 411

Query: 188 LNYCNSSRSINTQSLCLRHLNNSNLLSAF--SFASLRHLWTLHLYFNDFEELN 238
                  +         +  N +N ++    +   L  L  ++   + F   N
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 59/332 (17%), Positives = 110/332 (33%), Gaps = 42/332 (12%)

Query: 19  MSLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVSNNFFHSMA--SLRVLIFLYNRSLE 74
                NAI            H+       +++     N F  +A  S+R L   +   + 
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VF 279

Query: 75  NLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
           +L   +   L  L+ L+L++  I  +  E    L NL+ LNL Y   L  +       L 
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLP 338

Query: 133 MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL---LTVTLQIFGALQRLLN 189
            +  + + +           I     +   + L  L+ L+L      T+    ++  +  
Sbjct: 339 KVAYIDLQKN---------HIAIIQDQTF-KFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388

Query: 190 YCNSSRSINTQSLCLRHLNNS-----NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEV 244
             N   ++   +L    ++ S     NL   +    + HL  L L  N F   + D    
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP- 447

Query: 245 KRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISA 303
                     SL+++++  +  + A    L              LQ + ++   L  +  
Sbjct: 448 ------SENPSLEQLFLGENMLQLAWETELCWDV----FEGLSHLQVLYLNHNYLNSLPP 497

Query: 304 EVMDNLILFGRLEYLILEGLQNLKSIHSSYLP 335
            V  +L     L  L L     L  +  + LP
Sbjct: 498 GVFSHL---TALRGLSLNSN-RLTVLSHNDLP 525

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 5e-12
 Identities = 51/296 (17%), Positives = 93/296 (31%), Gaps = 44/296 (14%)

Query: 20  SLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79
              QN    L  +     +R L L    + ++++  F ++  L+VL  L    +  +   
Sbjct: 254 DPDQNTFAGLARS----SVRHLDLSHGFVFSLNSRVFETLKDLKVL-NLAYNKINKIADE 308

Query: 80  IL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRAL 137
               L +LQ L+LS+  +  L       L  +  ++L+    ++ I       L+ L+ L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTL 367

Query: 138 RMFECGFKVEQEADRILFGD----------SEVLVEELLALKHLNLLTVTLQIFGA---- 183
            + +           I                 L   L+ L    L  + +  F      
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 184 LQRLLNYCNSSRSINTQSLC-----LRHLNNSN---------LLSAFSFASLRHLWTLHL 229
           LQ L+   N   S +          L  L              L    F  L HL  L+L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 230 YFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISN 285
             N    L                 +L+ + +N ++    +   L    +++ IS 
Sbjct: 488 NHNYLNSLPPGVF--------SHLTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 58/343 (16%), Positives = 109/343 (31%), Gaps = 42/343 (12%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR-SLENLPLGIL-NLVSLQHLDLSW 93
           P+LR L L S+ +  +  + F  +  L  L   +   S   L  G   NL +L  LDLS 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 94  TGITTLPIE--LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEAD 151
             I +L +      L +LK ++      +  + +  +  L+             +     
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 152 RILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSN 211
                        +L +  ++    T+ I G     ++   +   I    +        N
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 212 L--LSAFSFASLRH--LWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFR 267
           +      +FA L    +  L L       LN                 L+ + + Y+K  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV--------FETLKDLKVLNLAYNKIN 303

Query: 268 HATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGRLEYLILEG---- 322
                 +A  A          LQ + +S   LGE+ +     L    ++ Y+ L+     
Sbjct: 304 K-----IADEA----FYGLDNLQVLNLSYNLLGELYSSNFYGLP---KVAYIDLQKNHIA 351

Query: 323 ------LQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQ 359
                  + L+ + +  L    L  I       +  + L  N+
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPS--IPDIFLSGNK 392

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 54/349 (15%), Positives = 108/349 (30%), Gaps = 44/349 (12%)

Query: 27  QNLTETPTC-PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLV 84
            NLT+ P        L L  N++ TV+ + F  +  L++L      +   +      NL 
Sbjct: 14  CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 85  SLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFC-LSRIPQPVISDLKMLRALRMFEC 142
           +L+ LDL  + I  L  +  + L +L  L L +     + +      +LK L  L + + 
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 143 GFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSL 202
             +         FG    L  + +      +  V       LQ       +    +  + 
Sbjct: 134 QIRSLYLHP--SFGKLNSL--KSIDFSSNQIFLVCEHELEPLQGK-----TLSFFSLAAN 184

Query: 203 CLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL----NIDAGEVKRIRETRGFHSLQK 258
            L    + +     +      L  L +  N +         +A    +       H +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 259 VYINYSKFRHATWLVLAPRA----KVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGR 314
               +   +       A  A    + + +S+            +  +++ V + L     
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF----------VFSLNSRVFETL---KD 291

Query: 315 LEYLILEG----------LQNLKSIHSSYLPFPRLKEICVWKCAELKKL 353
           L+ L L               L ++    L +  L E+       L K+
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 49/224 (21%), Positives = 80/224 (35%), Gaps = 27/224 (12%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR--------SLENLPLGILNLVSL- 86
           P +  + L  NH+  + +  F  +  L+ L    N         S+ ++ L    LV+L 
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397

Query: 87  ------QHLDLSWTGITTLPIE--LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALR 138
                   + LS   +  L I   L  + +L+ L L      S       S+   L  L 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 139 MFECGFKVEQEA--DRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL----LNYCN 192
           + E   ++  E      +F     L  ++L L H  L ++   +F  L  L    LN   
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHL--QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 193 -SSRSINTQSLCLRHLN-NSNLLSAFSFASLRHLWTLHLYFNDF 234
            +  S N     L  L+ + N L A +      L  L +  N F
Sbjct: 516 LTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 55/302 (18%), Positives = 92/302 (30%), Gaps = 67/302 (22%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI---L 81
           + LT  PT        L L SN L ++ +  F  +  L  L  L +  L           
Sbjct: 17  KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKL-SLSSNGLSFKGCCSQSDF 75

Query: 82  NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFE 141
              SL++LDLS+ G+ T+      L  L+ L+ +++         V   L+ L  L    
Sbjct: 76  GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD--- 132

Query: 142 CGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQS 201
                                     + H +       IF  L  L            + 
Sbjct: 133 --------------------------ISHTHTRVAFNGIFNGLSSL------------EV 154

Query: 202 LCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYI 261
           L +   +         F  LR+L  L L     E+L+  A             SLQ + +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--------FNSLSSLQVLNM 206

Query: 262 NYSKFRHATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGRLEYLIL 320
           +++ F       L              LQ +  S+  +     + + +      L +L L
Sbjct: 207 SHNNFFS-----LDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQH--FPSSLAFLNL 255

Query: 321 EG 322
             
Sbjct: 256 TQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 17  TRMSLMQNAIQNLTETPT---CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             +    + ++ ++E        +L  L +   H     N  F+ ++SL VL    N   
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
           EN    I   L +L  LDLS   +  L       L +L+ LN+ +      +       L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCL 222

Query: 132 KMLRALRM 139
             L+ L  
Sbjct: 223 NSLQVLDY 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 20  SLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79
            L   A  +L        L+ L +  N+  ++    +  + SL+VL       +      
Sbjct: 189 QLSPTAFNSL------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVL-DYSLNHIMTSKKQ 241

Query: 80  ILN--LVSLQHLDLS 92
            L     SL  L+L+
Sbjct: 242 ELQHFPSSLAFLNLT 256

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 54/286 (18%), Positives = 99/286 (34%), Gaps = 32/286 (11%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHS 58
             GL   P+  +  +   + L  N I  + +       +L  L L +N +  +S   F  
Sbjct: 40  DLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98

Query: 59  MASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY- 116
           +  L  L    N+ L+ LP  +    +LQ L +    IT +       L  +  + L   
Sbjct: 99  LVKLERLYLSKNQ-LKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 117 TFCLSRIPQPVISDLKMLRALRMFECGF-KVEQEADRILFGDSEVLVEELLALKHLNLLT 175
               S I       +K L  +R+ +     + Q     L           L L    +  
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---------TELHLDGNKITK 206

Query: 176 VTLQIFGALQRL----LNYCNSSRSINTQSLC----LRHLN-NSNLLSAF--SFASLRHL 224
           V       L  L    L++ NS  +++  SL     LR L+ N+N L       A  +++
Sbjct: 207 VDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265

Query: 225 WTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT 270
             ++L+ N+     I + +           S   V +  +  ++  
Sbjct: 266 QVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 41/245 (16%), Positives = 85/245 (34%), Gaps = 19/245 (7%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNH-LGTVSNNFFH 57
            + +T  P   + +    +  +   ++ + +        L  + +  N  L  +  + F 
Sbjct: 18  ESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 58  SMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWTGITTLPIELK-YLVNLKCLNLE 115
           ++  L  +      +L  +      NL +LQ+L +S TGI  LP   K + +    L+++
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 116 YTFCLSRIPQPVISDLKM-LRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL 174
               +  I +     L      L + + G +    +    F  +++   EL    + NL 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS---AFNGTQLD--ELNLSDNNNLE 191

Query: 175 TVTLQIF---GALQRLLNYCNSSRSINTQSLC----LRHLNNSNLLSAFSFASLRHLWTL 227
            +   +F        L        S+ +  L     LR  +  NL    +   L  L   
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEA 251

Query: 228 HLYFN 232
            L + 
Sbjct: 252 SLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 35/216 (16%), Positives = 58/216 (26%), Gaps = 22/216 (10%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NL 83
             +TE P+    +   L      L  +    F     L  +    N  LE +   +  NL
Sbjct: 19  SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78

Query: 84  VSLQHLDLS-WTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFE 141
             L  + +     +  +  E  + L NL+ L +  T  +  +P            L + +
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137

Query: 142 CGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQS 201
               +         G S      +L L    +  +    F   Q                
Sbjct: 138 -NINIHTIERNSFVGLSFES--VILWLNKNGIQEIHNSAFNGTQLD-------------E 181

Query: 202 LCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
           L L   NN   L    F        L +       L
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 47/248 (18%), Positives = 78/248 (31%), Gaps = 42/248 (16%)

Query: 14  KEITRMSLMQNAIQNLTETP------TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIF 67
                  +     + L  T       T P   AL L S  L    +  F  ++ L+ +  
Sbjct: 53  ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHM-T 110

Query: 68  LYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQ-- 125
           +    L  LP  +     L+ L L+   +  LP  +  L  L+ L++     L+ +P+  
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 126 ------PVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LT 175
                      L  L++LR+   G +            S   +  L  LK L +    L+
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRS--------LPAS---IANLQNLKSLKIRNSPLS 219

Query: 176 VTLQIFGALQRL----LNYCNSSRSI-----NTQSLCLRHLNNSNLLSAF--SFASLRHL 224
                   L +L    L  C + R+          L    L + + L         L  L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 225 WTLHLYFN 232
             L L   
Sbjct: 280 EKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 4/138 (2%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNL-TETPTCPHLRALFLHSNHLGTVSNNFFHSMASL 62
              +        +  + L    I++L        +L++L + ++ L  +     H +  L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI-HHLPKL 231

Query: 63  RVLIFLYNRSLENLPLGILNLVSLQHLDLSW-TGITTLPIELKYLVNLKCLNLEYTFCLS 121
             L      +L N P        L+ L L   + + TLP+++  L  L+ L+L     LS
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 122 RIPQPVISDLKMLRALRM 139
           R+P  +I+ L     + +
Sbjct: 292 RLP-SLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 4/119 (3%)

Query: 10  IGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFL-HSNHLGTVSNNFFHSMASLRVLIF 67
           I   + +  + +  + +  L       P L  L L     L      F    A L+ LI 
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLIL 260

Query: 68  LYNRSLENLPLGILNLVSLQHLDLSW-TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQ 125
               +L  LPL I  L  L+ LDL     ++ LP  +  L     + +           
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 56/246 (22%), Positives = 81/246 (32%), Gaps = 50/246 (20%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHS 58
             GL   P  G+     R+ L  N I ++       C +L  L+LHSN L  +    F  
Sbjct: 20  QQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 59  MASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY 116
           +A L  L    N  L ++       L  L  L L   G+  L     + L  L+ L L+ 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 117 TFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT- 175
              L  +P     DL  L  L +                              H N ++ 
Sbjct: 139 NA-LQALPDDTFRDLGNLTHLFL------------------------------HGNRISS 167

Query: 176 VTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE 235
           V  + F  L  L              L L   N    +   +F  L  L TL+L+ N+  
Sbjct: 168 VPERAFRGLHSL------------DRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 236 ELNIDA 241
            L  +A
Sbjct: 215 ALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
             + L +  +Q L          L+ L+L  N L  + ++ F  + +L  L    NR + 
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-IS 166

Query: 75  NLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
           ++P      L SL  L L    +  +     + L  L  L L     LS +P   ++ L+
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLR 225

Query: 133 MLRALRMFE 141
            L+ LR+ +
Sbjct: 226 ALQYLRLND 234

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 55/219 (25%), Positives = 85/219 (38%), Gaps = 25/219 (11%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NL 83
           +NL E P     + R L LH N +  +  N F  +  L +L    N  +  + +G    L
Sbjct: 53  KNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGL 111

Query: 84  VSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142
            +L  L+L    +TT+P     YL  LK L L     +  IP    + +  LR L + E 
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL 170

Query: 143 GFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSL 202
                    R+ +       E L  L++LNL    L+    L  L         I    L
Sbjct: 171 K--------RLSYISEGAF-EGLSNLRYLNLAMCNLREIPNLTPL---------IKLDEL 212

Query: 203 CLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
            L   N+ + +   SF  L HL  L +  +  + +  +A
Sbjct: 213 DLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWT 94
             L+ L+L +N + ++ +  F+ + SLR L     + L  +  G    L +L++L+L+  
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 95  GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFK-VEQEADRI 153
            +  +P  L  L+ L  L+L     LS I       L  L+ L M +   + +E+ A   
Sbjct: 196 NLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--- 250

Query: 154 LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL 187
            F + + L    + L H NL  +   +F  L  L
Sbjct: 251 -FDNLQSL--VEINLAHNNLTLLPHDLFTPLHHL 281

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 54/221 (24%), Positives = 85/221 (38%), Gaps = 27/221 (12%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
             + L +N I+ +         +L  L L  N L T+ N  F  ++ L+ L +L N  +E
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL-WLRNNPIE 149

Query: 75  NLPLGIL-NLVSLQHLDLS-WTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
           ++P      + SL+ LDL     ++ +     + L NL+ LNL     L  IP   ++ L
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPL 206

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYC 191
             L  L +        +      F     L +  L +    +  +    F  LQ L    
Sbjct: 207 IKLDELDLSGNHLSAIRPGS---FQGLMHLQK--LWMIQSQIQVIERNAFDNLQSL---- 257

Query: 192 NSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN 232
                     + L H NN  LL    F  L HL  +HL+ N
Sbjct: 258 --------VEINLAH-NNLTLLPHDLFTPLHHLERIHLHHN 289

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 13/206 (6%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWT 94
            + + +   ++ +  +      S   + +L     + +E +         ++Q L + + 
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 103

Query: 95  GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF-KVEQEADR 152
            I  LP    + +  L  L LE    LS +P+ +  +   L  L M      ++E +   
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-- 160

Query: 153 ILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN-NSN 211
             F  +  L    L L    L  V L +  +L       N   ++      +  L+ + N
Sbjct: 161 --FQATTSLQN--LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI-AVEELDASHN 215

Query: 212 LLSAFSFASLRHLWTLHLYFNDFEEL 237
            ++         L  L L  N+  + 
Sbjct: 216 SINVVRGPVNVELTILKLQHNNLTDT 241

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
            E+T + L  N + +       P L  + L  N L  +  + F  M  L  L    NR L
Sbjct: 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-L 284

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKM 133
             L L    + +L+ LDLS   +  +         L+ L L++   +  +       LK 
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKN 343

Query: 134 LR 135
           L 
Sbjct: 344 LT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 46/241 (19%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
           T + L +N + +L        P L  L + +N+L  + ++ F +  SL+ L    NR L 
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LT 178

Query: 75  NLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML 134
           ++ L    + SL H ++S+  ++TL I     + ++ L+  +   ++ +  PV  +L +L
Sbjct: 179 HVDLS--LIPSLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPVNVELTIL 231

Query: 135 R----ALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY 190
           +     L                   +   LVE  + L +  L  +    F  +QRL   
Sbjct: 232 KLQHNNLTDTA------------WLLNYPGLVE--VDLSYNELEKIMYHPFVKMQRL--- 274

Query: 191 CNSSRSINTQSLCLRHLNNSNLLSAFS--FASLRHLWTLHLYFNDFEELNIDAGEVKRIR 248
                    + L + +    N L A +     +  L  L L  N    +  +  +  R+ 
Sbjct: 275 ---------ERLYISN----NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321

Query: 249 E 249
            
Sbjct: 322 N 322

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 52/291 (17%), Positives = 97/291 (33%), Gaps = 24/291 (8%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
              + L  N +++L      + P L+ L L    + T+ +  + S++ L  LI   N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
           ++L LG    L SLQ L    T + +L    + +L  LK LN+ +    S       S+L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVLVEEL------------LALKHLNLLTVTL- 178
             L  L +     +     D  +     +L   L             A K + L  +TL 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 179 --QIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEE 236
                  + +          +    L L    N   L  F  ++L  L  L +       
Sbjct: 209 NNFDSLNVMKTC--IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 237 LNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQ 287
           L+    ++  +       ++    +                 + + + NC+
Sbjct: 267 LDYYLDDIIDL--FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 48/267 (17%), Positives = 81/267 (30%), Gaps = 50/267 (18%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN--- 70
             ++  SL+   I+ + +       + L L +   G        S+  L           
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 71  -----RSLENL-------------PLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL 112
                 SLE L                     SL++LDLS+ G+ T+      L  L+ L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 113 NLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN 172
           + +++         V   L+ L  L +     +               +   L +L+ L 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR----------VAFNGIFNGLSSLEVLK 451

Query: 173 L------LTVTLQIFGALQRL----LNYCN----SSRSINTQSLCLRHLN-NSNLLS--- 214
           +            IF  L+ L    L+ C     S  + N+ S  L+ LN + N      
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLD 510

Query: 215 AFSFASLRHLWTLHLYFNDFEELNIDA 241
            F +  L  L  L    N         
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 21/171 (12%)

Query: 68  LYNRSLENLPLGILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQP 126
               +   +P  +    S ++LDLS+  +  L          L+ L+L     +  I   
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDG 70

Query: 127 VISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQR 186
               L  L  L +        Q      F     L +  L     NL ++     G L+ 
Sbjct: 71  AYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQK--LVAVETNLASLENFPIGHLKT 125

Query: 187 LLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
           L            + L + H    +      F++L +L  L L  N  + +
Sbjct: 126 L------------KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 7e-12
 Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 25/215 (11%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWT 94
             +  L L+   +  +    F    +++ L   +N  +  LP  +  N+  L  L L   
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN 133

Query: 95  GITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRI 153
            +++LP  +      L  L++     L RI          L+ L++              
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL--------- 183

Query: 154 LFGDSEVLVEELLALKHLNL----LTVTLQIFGALQRLLNYCNSSRSINTQSLC-LRHLN 208
               + V +  + +L H N+    L+ TL I  A++ L    NS   +       L  L 
Sbjct: 184 ----THVDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVRGPVNVELTILK 238

Query: 209 NSN--LLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
             +  L       +   L  + L +N+ E++    
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 51/327 (15%), Positives = 107/327 (32%), Gaps = 37/327 (11%)

Query: 20  SLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79
              Q+      +  T  + + +   ++ +  +      S   + +L     + +E +   
Sbjct: 36  MQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY 93

Query: 80  IL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRAL 137
                 ++Q L + +  I  LP    + +  L  L LE    LS +P+ +  +   L  L
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTL 152

Query: 138 RMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSI 197
            M     +     +   F  +  L  + L L    L  V L +  +L       N   ++
Sbjct: 153 SMSNNNLE---RIEDDTFQATTSL--QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207

Query: 198 NTQSLCLRHLN-NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSL 256
                 +  L+ + N ++         L  L L  N+  +                +  L
Sbjct: 208 AIPIA-VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA----------WLLNYPGL 256

Query: 257 QKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGRL 315
            +V ++Y++        +            QRL+ + IS  +L  ++            L
Sbjct: 257 VEVDLSYNELEK-----IMYHP----FVKMQRLERLYISNNRLVALNLYGQPI----PTL 303

Query: 316 EYLILEGLQNLKSIHSSYLPFPRLKEI 342
           + L L     L  +  +   F RL+ +
Sbjct: 304 KVLDLSHNH-LLHVERNQPQFDRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
            E+T + L  N + +       P L  + L  N L  +  + F  M  L  L    NR L
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-L 290

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKM 133
             L L    + +L+ LDLS   +  +         L+ L L++   +  +       LK 
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKN 349

Query: 134 LR 135
           L 
Sbjct: 350 LT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 46/241 (19%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
           T + L +N + +L        P L  L + +N+L  + ++ F +  SL+ L    NR L 
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LT 184

Query: 75  NLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML 134
           ++ L ++   SL H ++S+  ++TL I     + ++ L+  +   ++ +  PV  +L +L
Sbjct: 185 HVDLSLIP--SLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPVNVELTIL 237

Query: 135 R----ALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY 190
           +     L                   +   LVE  + L +  L  +    F  +QRL   
Sbjct: 238 KLQHNNLTDTA------------WLLNYPGLVE--VDLSYNELEKIMYHPFVKMQRL--- 280

Query: 191 CNSSRSINTQSLCLRHLNNSNLLSAFS--FASLRHLWTLHLYFNDFEELNIDAGEVKRIR 248
                    + L + +    N L A +     +  L  L L  N    +  +  +  R+ 
Sbjct: 281 ---------ERLYISN----NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327

Query: 249 E 249
            
Sbjct: 328 N 328

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 55/229 (24%), Positives = 80/229 (34%), Gaps = 24/229 (10%)

Query: 20  SLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL 78
            L    +  L         L+ L L +N    +      +  SL  L    N     L  
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

Query: 79  GIL-NLVSLQHLDLSWTGITTLPI---ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML 134
           G L NL +L+ LDLS   I T      +L+ L +L+ LNL Y      +      +   L
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQL 402

Query: 135 RALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSS 194
             L +     KV+    +  F +  +L    L L H  L   + Q+F  L  L       
Sbjct: 403 ELLDLAFTRLKVKD--AQSPFQNLHLLKV--LNLSHSLLDISSEQLFDGLPAL------- 451

Query: 195 RSINTQSLCLRH--LNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
                Q L L+       N+    S  +L  L  L L F D   ++  A
Sbjct: 452 -----QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 37/232 (15%), Positives = 68/232 (29%), Gaps = 23/232 (9%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV 84
             L E P         L    N L T+ N  F  + +L  L     +          +  
Sbjct: 22  LGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81

Query: 85  SLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECG 143
            L  L L+   +  +    L     LK L    T  +S I    + + K L +L +    
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH 140

Query: 144 FKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY-----CNSSRSIN 198
                         +E L    L  ++  +  ++ +   +LQ+  N       N    I 
Sbjct: 141 I---SSIKLPKGFPTEKLKV--LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 199 TQSLCLRHL---------NNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
             +               N   +      ++++ LW       D E+++   
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 25/233 (10%)

Query: 18  RMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTV--SNNFFHSMASLRVLIFLYNRSLEN 75
           R+ L    ++NL       +LR L L  + + T    N    +++ L+ L   YN    +
Sbjct: 338 RLELGTGCLENL------ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLS 390

Query: 76  LPLGIL-NLVSLQHLDLSWTGITTLPIE--LKYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
           L          L+ LDL++T +     +   + L  LK LNL ++  L    + +   L 
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLP 449

Query: 133 MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL--LN- 189
            L+ L +    F                L  E+L L   +L ++    F +L+ +  ++ 
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRL--EILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 190 YCNSSRSINTQSLC---LRHLN-NSNLLSAF---SFASLRHLWTLHLYFNDFE 235
             N   S + ++L      +LN  SN +S         L    T++L  N  +
Sbjct: 508 SHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTC---PHLRALFLHSNHLGTVSNNFFH 57
              L   P+  +      + L  N +  L    T     +L +L L  NHL  +S+  F 
Sbjct: 27  KQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85

Query: 58  SMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLE 115
            + +LR L    N  L  L   +  +L +L+ L L    I  +     + +  L+ L L 
Sbjct: 86  PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 116 YTFCLSRIPQPVISDLKMLRALR 138
               +SR P  +I D   L  L 
Sbjct: 145 QNQ-ISRFPVELIKDGNKLPKLM 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
             + L  N +  ++       P+LR L L SNHL T+    F  + +L VL+   N  + 
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IV 125

Query: 75  NLPLGIL-NLVSLQHLDLSWTGITTLPIE----LKYLVNLKCLNLEYTFCLSRIPQPVIS 129
            +      ++  LQ L LS   I+  P+E       L  L  L+L     L ++P   + 
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ 184

Query: 130 DLKMLRAL 137
            L      
Sbjct: 185 KLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL----NLVSLQHLDL 91
             L  L L++NH+  V  N F  MA L+ L +L    +   P+ ++     L  L  LDL
Sbjct: 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKL-YLSQNQISRFPVELIKDGNKLPKLMLLDL 170

Query: 92  SWTGITTLPIE-LKYLVNLKCLNL 114
           S   +  LP+  L+ L       L
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGL 194

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 31/257 (12%)

Query: 1   GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHS 58
             GL   P+  +  + T + L  N I  L +       HL AL L +N +  +    F  
Sbjct: 42  DLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100

Query: 59  MASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY- 116
           +  L+ L    N  L  +P  + +  SL  L +    I  +P      L N+ C+ +   
Sbjct: 101 LRKLQKLYISKNH-LVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 117 TFCLSRIPQPVISDLKMLRALRMFECGF-KVEQEADRILFGDSEVLVEELLALKHLNLLT 175
               S         LK L  LR+ E     + ++    L           L L H  +  
Sbjct: 158 PLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETL---------NELHLDHNKIQA 207

Query: 176 VTLQIFGALQRL----LNYCNSSRSINTQSLC----LRHLN-NSNLLSAFS--FASLRHL 224
           + L+      +L    L + N  R I   SL     LR L+ ++N LS        L+ L
Sbjct: 208 IELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266

Query: 225 WTLHLYFNDFEELNIDA 241
             ++L+ N+  ++ ++ 
Sbjct: 267 QVVYLHTNNITKVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWT 94
             L  L L  N +  +        + L  L   +N+ +  +  G L  L +L+ L L   
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN 251

Query: 95  GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRAL 137
            ++ +P  L  L  L+ + L     ++++       +      
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKR 293

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 62/359 (17%), Positives = 108/359 (30%), Gaps = 63/359 (17%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             +T +    ++I ++T       L  L   SN++ T+         +L  L    N+ L
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNK-L 97

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKM 133
            NL +    L  L +L+     +T L +       L  LN      L+ I    +S    
Sbjct: 98  TNLDVT--PLTKLTYLNCDTNKLTKLDVSQ--NPLLTYLNCARNT-LTEID---VSHNTQ 149

Query: 134 LRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN-----LLTVTLQIFGALQRLL 188
           L  L                    +++ V     L  L+     +  + +     L RL 
Sbjct: 150 LTELDCHLNKKI------------TKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197

Query: 189 NYCNSSRSINTQSLC-LRHLN-NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKR 246
              N+   ++      L  L+ +SN L+      L  L       N   EL++       
Sbjct: 198 CDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVS------ 251

Query: 247 IRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQE--IISMEKLGEISAE 304
                    L  ++   +                I +++  +L         K+ E+   
Sbjct: 252 -----TLSKLTTLHCIQTDLLE------------IDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 305 VMDNLILFG----RLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQ 359
               L L       +  L L     L  +   YL    L E+ V    +LK L      
Sbjct: 295 HNTQLYLLDCQAAGITELDLSQNPKLVYL---YLNNTELTELDVSHNTKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 32/232 (13%), Positives = 65/232 (28%), Gaps = 23/232 (9%)

Query: 10  IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLY 69
           +    ++T +    N      +      L  L    N +  +          L  L    
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDT 200

Query: 70  NRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVIS 129
           N  +  L L     + L  LD S   +T + +    L  L   +      L+ +    +S
Sbjct: 201 NN-ITKLDLN--QNIQLTFLDCSSNKLTEIDVTP--LTQLTYFDCSVN-PLTELD---VS 251

Query: 130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT-VTLQIFGALQRLL 188
            L  L  L   +           I    +  L+      +    +  + +     L  L 
Sbjct: 252 TLSKLTTLHCIQTDLL------EIDLTHNTQLIY--FQAEGCRKIKELDVTHNTQLYLLD 303

Query: 189 NYCNSSRSINTQSLC-LRHLN-NSNLLSAFSFASLRHLWTLHLYFNDFEELN 238
                   ++      L +L  N+  L+    +    L +L       ++ +
Sbjct: 304 CQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFS 355

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 47/322 (14%), Positives = 88/322 (27%), Gaps = 57/322 (17%)

Query: 62  LRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLS 121
               +           +    L +L  LD   + IT +   ++ L  L  L       ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-IT 77

Query: 122 RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN-----LLTV 176
            +    +S    L  L                    + + V  L  L +LN     L  +
Sbjct: 78  TLD---LSQNTNLTYLACDSNKL-------------TNLDVTPLTKLTYLNCDTNKLTKL 121

Query: 177 TLQIFGALQRLLNYCNSSRSI---NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFND 233
            +     L  L    N+   I   +   L     + +  ++         L TL   FN 
Sbjct: 122 DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181

Query: 234 F-----------EELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIR 282
                         LN D   + ++ +      L  +  + +K               I 
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKL------------TEID 228

Query: 283 ISNCQRLQEI-ISMEKLGEISAEVMDNL----ILFGRLEYLILEGLQNLKSIHSSYLPFP 337
           ++   +L     S+  L E+    +  L     +   L  + L     L    +      
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK- 287

Query: 338 RLKEICVWKCAELKKLPLDCNQ 359
            +KE+ V    +L  L      
Sbjct: 288 -IKELDVTHNTQLYLLDCQAAG 308

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 24/225 (10%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
              + L  N +++L      + P L+ L L    + T+ +  + S++ L  LI   N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQP-VISD 130
           ++L LG    L SLQ L    T + +L      +L  LK LN+ +   +     P   S+
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN 147

Query: 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG-ALQRLLN 189
           L  L  L +     +     D             L  L  + LL ++L +    +  +  
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTD-------------LRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 190 YCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF 234
              + + I  + L L   N    +    F  L  L  + L+ N +
Sbjct: 195 --GAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 236

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 47/232 (20%), Positives = 77/232 (33%), Gaps = 46/232 (19%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV 84
             LT  P C   H+  L +  N+L ++          LR L    N+ L +LP+    L+
Sbjct: 50  SGLTTLPDCLPAHITTLVIPDNNLTSLPALP----PELRTLEVSGNQ-LTSLPVLPPGLL 104

Query: 85  SLQHLDLSWTGITTLPIELKYLV--------------NLKCLNLEYTFCLSRIPQPVISD 130
            L       T +  LP  L  L                L+ L++     L+ +P  + S+
Sbjct: 105 ELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLP-ALPSE 162

Query: 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQIFGALQR 186
           L  L A               ++       L      L+ L++    L     +   L +
Sbjct: 163 LCKLWAYNN------------QL-----TSLPMLPSGLQELSVSDNQLASLPTLPSELYK 205

Query: 187 LLNYCNSSRSINTQSLCLRHLN-NSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
           L  Y N   S+      L+ L  + N L++        L  L +  N    L
Sbjct: 206 LWAYNNRLTSLPALPSGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 17  TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL 76
            ++    N + +L   P+   L+ L +  N L ++        + L+ L+   NR L +L
Sbjct: 204 YKLWAYNNRLTSLPALPS--GLKELIVSGNRLTSLPV----LPSELKELMVSGNR-LTSL 256

Query: 77  PLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLE 115
           P+    L     L +    +T LP  L +L +   +NLE
Sbjct: 257 PMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLE 292

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 21/220 (9%)

Query: 27  QNLTETPTCP-HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLV 84
           + L + P  P H+  + L  N +  ++   F  +  L+ L          +       L 
Sbjct: 20  RGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 85  SLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY-TFCLSRIPQPVISDLKMLRALRMFEC 142
           SL  L L +     L       L NL+ L L       + +       L  L  L + + 
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 143 GFKVEQEADRILFGDSEVLVEELLALKHLNLL-----TVTLQIFGALQRLLNYCNSSRSI 197
              +++      F         +     L+L      ++  +     Q          SI
Sbjct: 140 --NIKKIQPASFF-------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

Query: 198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
             Q +   +          +      + TL L  N F+E 
Sbjct: 191 TLQDM---NEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
           +    L ++ I  L ++       L  L L  N +  + +N F  +  L  L  L    L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL-NLSQNFL 335

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            ++   +  NL  L+ LDLS+  I  L  +    L NLK L L+    L  +P  +   L
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRL 394

Query: 132 KMLRALRMF 140
             L+ + + 
Sbjct: 395 TSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 14  KEITRMSLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
             + +++L QN + ++          L  L L  NH+  + +  F  + +L+ L  L   
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL-ALDTN 381

Query: 72  SLENLPLGIL-NLVSLQHLDLS 92
            L+++P GI   L SLQ + L 
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLH 403

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 30/225 (13%)

Query: 17  TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL 76
             + +  N ++ L E      L+ + + +N L  + +       SL  +    N+ LE L
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQ-LEEL 188

Query: 77  PLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRA 136
           P  + NL  L  +      +  LP      ++L+ +       L  +P+  + +L  L  
Sbjct: 189 P-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNI-LEELPE--LQNLPFLTT 241

Query: 137 LRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ----IFGALQRLLNYCN 192
           +                     + L +   +L+ LN+    L     +  +L  L    N
Sbjct: 242 IYADNNLL--------------KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 193 SSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
               ++     L +LN S+            L  L++  N   EL
Sbjct: 288 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL 332

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 45/247 (18%), Positives = 73/247 (29%), Gaps = 53/247 (21%)

Query: 28  NLTETP----TCPHLRALFLHSNHLGTVSNNFFHSMASLRV--LIFLYNRSLENLPLGIL 81
           NLTE P            +   +     +         + V  L    +R    L L  L
Sbjct: 22  NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81

Query: 82  NLVS-------LQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQ--------- 125
            L S       L+ L  S   +T LP   + L +L   N      LS +P          
Sbjct: 82  GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSN 140

Query: 126 ------PVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LT 175
                 P + +   L+ + +     K               L +   +L+ +      L 
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNNSLK--------------KLPDLPPSLEFIAAGNNQLE 186

Query: 176 VTLQIFGALQRLLN---YCNSSRSINTQSLCLRHLN-NSNLLSAF-SFASLRHLWTLHLY 230
             L     L  L       NS + +    L L  +   +N+L       +L  L T++  
Sbjct: 187 -ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 231 FNDFEEL 237
            N  + L
Sbjct: 246 NNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 46/242 (19%), Positives = 78/242 (32%), Gaps = 46/242 (19%)

Query: 17  TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL 76
             +    N ++ L E    P L  ++  +N L T+ +       SL  L    N  L +L
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNY-LTDL 272

Query: 77  PLGILNLVSLQHLDLSWTGITTLPIELKYL--------------VNLKCLNLEYTFCLSR 122
           P    +L  L   +  ++G++ LP  L YL               +L+ LN+     L  
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIE 331

Query: 123 IPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTL 178
           +P    +    L  L                       + E    LK L++    L    
Sbjct: 332 LP----ALPPRLERLIASFNHLA--------------EVPELPQNLKQLHVEYNPLREFP 373

Query: 179 QIFGALQRLLNYCNSSRSINTQSLCLRHLN-NSNLLSAF--SFASLRHLWTLHLYFNDFE 235
            I  +++  L   +    +      L+ L+  +N L  F     S+  L        D  
Sbjct: 374 DIPESVED-LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPY 432

Query: 236 EL 237
           E 
Sbjct: 433 EF 434

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 44/291 (15%), Positives = 95/291 (32%), Gaps = 52/291 (17%)

Query: 76  LPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLR 135
           +    ++   LQ      + +T +P+E + + +       ++    R   P   + + + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMA 61

Query: 136 ALRMFECGFKVEQEADRILFGDS-EVLVEELLALKHLNL----LTVTLQIFGALQRLLNY 190
             R+ +C  +   E +  L       L E    L+ L      LT   ++  +L+ LL  
Sbjct: 62  VSRLRDCLDRQAHELE--LNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 191 CNSSRSINTQSLCLRHLN-NSNLLSAF-SFASLRHLWTLHLYFNDFEELNIDAGEVKRIR 248
            N+ ++++     L +L  ++N L       +   L  + +  N  ++L           
Sbjct: 120 NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP---------- 169

Query: 249 ETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDN 308
                 SL+ +    ++              +  + N   L  I              +N
Sbjct: 170 --DLPPSLEFIAAGNNQLEE-----------LPELQNLPFLTAI-----------YADNN 205

Query: 309 LILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQ 359
                 L+ L  +   +L+SI +       L E+       L  +  D N 
Sbjct: 206 -----SLKKLP-DLPLSLESIVAGNNILEELPELQ--NLPFLTTIYADNNL 248

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 54/354 (15%), Positives = 99/354 (27%), Gaps = 88/354 (24%)

Query: 37  HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV------------ 84
            L+    HS++L  +     + + S       ++    N P G                 
Sbjct: 12  FLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 85  -SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECG 143
                L+L+  G+++LP       +L+ L       L+ +P  +   LK L         
Sbjct: 71  RQAHELELNNLGLSSLPELPP---HLESLVASCNS-LTELP-ELPQSLKSLLVDNN---- 121

Query: 144 FKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN------YCNSSRSI 197
                        + + L +    L++L +    L+    LQ            NS + +
Sbjct: 122 -------------NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168

Query: 198 NTQSLCLRHLN-NSNLLSAF-SFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHS 255
                 L  +   +N L       +L  L  ++   N  ++L                 S
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL------------PDLPLS 216

Query: 256 LQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEI-ISMEKLGEISAEVMDNLILFGR 314
           L+ +    +               +  + N   L  I      L  +             
Sbjct: 217 LESIVAGNNILEE-----------LPELQNLPFLTTIYADNNLLKTLPDL-------PPS 258

Query: 315 LEYLIL---------EGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQ 359
           LE L +         E  Q+L  +  S   F  L E+       L  L    N+
Sbjct: 259 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNE 308

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
            ++ L  N + +L          LR L+L+ N L T+    F  + +L  L ++ +  L+
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL-WVTDNKLQ 98

Query: 75  NLPLGIL-NLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
            LP+G+   LV+L  L L    + +LP  +   L  L  L+L Y   L  +P+ V   L 
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT 157

Query: 133 MLRALRM 139
            L+ LR+
Sbjct: 158 SLKELRL 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 34/215 (15%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN-L 83
           + LT  P+      + L L SN L ++ +  FH +  LR+L +L +  L+ LP GI   L
Sbjct: 26  KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL-YLNDNKLQTLPAGIFKEL 84

Query: 84  VSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142
            +L+ L ++   +  LPI +   LVNL  L L+    L  +P  V   L  L  L +   
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN 143

Query: 143 GFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ-----IFGALQRLLNYCNSSRSI 197
             +   +    +F       ++L +LK L L    L+      F  L  L          
Sbjct: 144 ELQSLPKG---VF-------DKLTSLKELRLYNNQLKRVPEGAFDKLTEL---------- 183

Query: 198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN 232
             ++L L + N    +   +F SL  L  L L  N
Sbjct: 184 --KTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 16/85 (18%)

Query: 17  TRMSLMQNAIQNLTETPTCPH--------LRALFLHSNHLGTVSNNFFHSMASLRVLIFL 68
           T +SL  N +Q+L      P         L+ L L++N L  V    F  +  L+ L  L
Sbjct: 136 TYLSLGYNELQSL------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL-KL 188

Query: 69  YNRSLENLPLGIL-NLVSLQHLDLS 92
            N  L+ +P G   +L  L+ L L 
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQ 213

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 17/108 (15%)

Query: 17  TRMSLMQNAIQ--------NLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFL 68
             + L +N ++        +LT+      L  L L  N L ++    F  + SL+ L  L
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTK------LTYLSLGYNELQSLPKGVFDKLTSLKEL-RL 164

Query: 69  YNRSLENLPLGIL-NLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNL 114
           YN  L+ +P G    L  L+ L L    +  +P      L  LK L L
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 31/246 (12%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           +T        + IT++ +    + ++       +L  L L+ N +  +S     ++  L 
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLT 91

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRI 123
            L    N+ + ++   + NL +L+ L L+   I+ +   L  L  +  LNL     LS +
Sbjct: 92  NLYIGTNK-ITDIS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL 148

Query: 124 PQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQ 179
               +S++  L  L + E   K           D   +   L  L  L+L    +   + 
Sbjct: 149 --SPLSNMTGLNYLTVTESKVK-----------DVTPI-ANLTDLYSLSLNYNQIE-DIS 193

Query: 180 IFGALQRL----LNYCNSSRSINTQSL-CLRHLN-NSNLLSAFS-FASLRHLWTLHLYFN 232
              +L  L          +      ++  L  L   +N ++  S  A+L  L  L +  N
Sbjct: 194 PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253

Query: 233 DFEELN 238
              ++N
Sbjct: 254 QISDIN 259

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 31/229 (13%)

Query: 20  SLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79
           + +   I  +             L    +  V       + S+  L+ +    + ++  G
Sbjct: 6   ATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLV-VAGEKVASIQ-G 61

Query: 80  ILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRM 139
           I  L +L++L+L+   IT +   L  LV L  L +     ++ I    + +L  LR L +
Sbjct: 62  IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNK-ITDI--SALQNLTNLRELYL 117

Query: 140 FECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQIFGALQRL----LNYC 191
            E               D   L   L  +  LNL        L     +  L    +   
Sbjct: 118 NEDNIS-----------DISPL-ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 192 NSSRSINTQSL-CLRHLN-NSNLLSAFS-FASLRHLWTLHLYFNDFEEL 237
                    +L  L  L+ N N +   S  ASL  L     Y N   ++
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 52/233 (22%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           +     I    ++  +SL  N I++++   +   L     + N +  ++     +M  L 
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLN 224

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRI 123
            L    N+ + +L   + NL  L  L++    I+ +   +K L  LK LN+     +S I
Sbjct: 225 SLKIGNNK-ITDLS-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDI 280

Query: 124 PQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGA 183
              V+++L  L +L +                      +E +  L +L  L         
Sbjct: 281 S--VLNNLSQLNSLFLNNNQL-------------GNEDMEVIGGLTNLTTL--------- 316

Query: 184 LQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEE 236
                                  L+ +++      ASL  + +        ++
Sbjct: 317 ----------------------FLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 50/331 (15%), Positives = 105/331 (31%), Gaps = 40/331 (12%)

Query: 14  KEITRMSLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
                  +  ++++    +   +  +++ L L  N L  +S         L +L    N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            L      + +L +L+ LDL+   +  L +      +++ L+      +SR+     S  
Sbjct: 70  -LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVS---CSRG 119

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGA----LQRL 187
           +  + + +             +  G    +    L LK   + TV      A    L+ L
Sbjct: 120 QGKKNIYLANNKIT---MLRDLDEGCRSRVQY--LDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 188 LNYCNSSRSINTQSLC--LRHLN-NSNLLSAF--SFASLRHLWTLHLYFNDFEELNIDAG 242
               N    +  Q +   L+ L+ +SN L+     F S   +  + L  N    +     
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE---- 230

Query: 243 EVKRIRETRGFHSLQKVYINYSKFRHAT---WLVLAPRAKVIRISNCQRLQEIISMEKLG 299
                +  R   +L+   +  + F   T   +     R + +     ++L      E+  
Sbjct: 231 -----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN--EEEC 283

Query: 300 EISAEVMDNLILFGRLEYLILEGLQNLKSIH 330
            +             L     + L  L   H
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 10  IGMWKEITRMSLMQNAIQNL---TETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLI 66
            G    +  + L  N I  +       +   L  L L  N +  V        A L+ L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLD 197

Query: 67  FLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
              N+ L  +     +   +  + L    +  +   L++  NL+  +L  
Sbjct: 198 LSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 26/173 (15%)

Query: 80  ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALR 138
             N    +   ++ + +        +   N+K L+L     LS+I    ++    L  L 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLN 64

Query: 139 MFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQIFGALQRLLNYCNSS 194
           +         +            +E L  L+ L+L    +   L +  +++ L    N+ 
Sbjct: 65  LSSNVLYETLD------------LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI 111

Query: 195 RSI------NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
             +        +++ L + N   +L          +  L L  N+ + +N   
Sbjct: 112 SRVSCSRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 17  TRMSLMQNAIQNLTETPT---CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             + L  N    L  T      P LR +   +N +  +    F   + +  ++   NR L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-L 93

Query: 74  ENLPLGIL-NLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDL 131
           EN+   +   L SL+ L L    IT +  +    L +++ L+L Y   ++ +       L
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL-YDNQITTVAPGAFDTL 152

Query: 132 KMLRALRMF 140
             L  L + 
Sbjct: 153 HSLSTLNLL 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 8e-09
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 15/127 (11%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR-- 71
             I ++    + I+++      P++  LFL+ N L  +      ++ +L  L    N+  
Sbjct: 43  NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            L +L     +L  L+ L L   GI+ +   L +L  L+ L L       +I    I+ L
Sbjct: 101 DLSSLK----DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN----KITD--ITVL 149

Query: 132 KMLRALR 138
             L  L 
Sbjct: 150 SRLTKLD 156

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 50/230 (21%)

Query: 38  LRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGIT 97
           +      S  +  +      + A       L  +S+ +       L S+  +  + + I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDN-LKKKSVTDAV-TQNELNSIDQIIANNSDIK 56

Query: 98  TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157
           ++   ++YL N+  L L     L+ I    +++LK L  L + E   K           D
Sbjct: 57  SVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIK-----------D 101

Query: 158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLC--LRHLN-NSNLLS 214
              L ++L  LK L+L                  N    IN       L  L   +N ++
Sbjct: 102 LSSL-KDLKKLKSLSL----------------EHNGISDINGLVHLPQLESLYLGNNKIT 144

Query: 215 AFS-FASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINY 263
             +  + L  L TL L  N          ++  I    G   LQ +Y++ 
Sbjct: 145 DITVLSRLTKLDTLSLEDN----------QISDIVPLAGLTKLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 6/126 (4%)

Query: 10  IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLY 69
           +    ++  + L  N I ++T       L  L L  N +  +       +  L+ L    
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184

Query: 70  NRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVIS 129
           N  + +L   +  L +L  L+L        PI   +  NL   N       S +   +IS
Sbjct: 185 NH-ISDLR-ALAGLKNLDVLELFSQECLNKPIN--HQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 130 DLKMLR 135
           D     
Sbjct: 241 DDGDYE 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 36/230 (15%), Positives = 68/230 (29%), Gaps = 21/230 (9%)

Query: 10  IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLY 69
                 +  ++L  N I ++        L+ L L SN L  +    F S A +  +  L 
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWI-SLR 222

Query: 70  NRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVIS 129
           N  L  +   +    +L+H DL   G     +   +  N +   +     + ++      
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ-TVKKLTGQNEE 281

Query: 130 DLKMLRALRM--FECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL 187
           +  +        + C       ADR++           L  K   LL+        L+  
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIA----------LKRKEHALLSGQGSETERLECE 331

Query: 188 LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
                  R I+      R + +            +   TL       +E 
Sbjct: 332 RENQARQREIDALKEQYRTVIDQ------VTLRKQAKITLEQKKKALDEQ 375

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 34/238 (14%)

Query: 15  EITRMSLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRS 72
                 +  ++++    +   +  +++ L L  N L  +S         L +L    N  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV- 69

Query: 73  LENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
           L      + +L +L+ LDL+   +  L +      +++ L+      +SR+        K
Sbjct: 70  LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSCSRGQGKK 123

Query: 133 MLR----ALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGA----L 184
            +      + M                G    +    L LK   + TV      A    L
Sbjct: 124 NIYLANNKITMLRDL----------DEGCRSRVQY--LDLKLNEIDTVNFAELAASSDTL 171

Query: 185 QRLLNYCNSSRSINTQSLC--LRHLN-NSNLLSAF--SFASLRHLWTLHLYFNDFEEL 237
           + L    N    +  Q +   L+ L+ +SN L+     F S   +  + L  N    +
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 24/172 (13%)

Query: 80  ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALR 138
             N    +   ++ + +        +   N+K L+L     LS+I    ++    L  L 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLN 64

Query: 139 MFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQIFGALQRLLNYCNSS 194
           +         +            +E L  L+ L+L    +   L +  +++ L    N+ 
Sbjct: 65  LSSNVLYETLD------------LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI 111

Query: 195 RSINTQSLC-LRHLNNSN----LLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
             ++       +++  +N    +L          +  L L  N+ + +N   
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 64/381 (16%), Positives = 131/381 (34%), Gaps = 55/381 (14%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           +T         ++T +   +  I+++       +L  +   +N L  ++     ++  L 
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLV 93

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRI 123
            ++   N+ + ++   + NL +L  L L    IT +   LK L NL  L L     +S I
Sbjct: 94  DILMNNNQ-IADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDI 149

Query: 124 PQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQ 179
                  L  L +L+    G +V               +  L  L+ L++    ++  + 
Sbjct: 150 S-----ALSGLTSLQQLSFGNQVTDLKP----------LANLTTLERLDISSNKVS-DIS 193

Query: 180 IFGALQRL----LNYCNSSRSINTQSL-CLRHLN-NSNLLSAFS-FASLRHLWTLHLYFN 232
           +   L  L          S       L  L  L+ N N L      ASL +L  L L  N
Sbjct: 194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253

Query: 233 DF------------EELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKV 280
                          EL + A ++  I    G  +L  + +N ++    + +        
Sbjct: 254 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 313

Query: 281 IRISNCQRLQEIISMEKLGEISAEVMDNLILFG-RLEYLI-LEGLQNLKSIHSSYLPFPR 338
           + +     + +I  +  L ++       L  +  ++  +  L  L N+  + + +     
Sbjct: 314 LTLYFNN-ISDISPVSSLTKLQ-----RLFFYNNKVSDVSSLANLTNINWLSAGHNQISD 367

Query: 339 LKEICVWKCAELKKLPLDCNQ 359
           L  +       + +L L+   
Sbjct: 368 LTPLA--NLTRITQLGLNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 60/359 (16%), Positives = 129/359 (35%), Gaps = 51/359 (14%)

Query: 24  NAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNL 83
             I  +             L   ++    +     +  +  L       ++++  G+  L
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQ-ADRLGIKSID-GVEYL 67

Query: 84  VSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECG 143
            +L  ++ S   +T +   LK L  L  + +     ++ I    +++L  L  L +F   
Sbjct: 68  NNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQ 123

Query: 144 FKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL-----LNYCNSSRSIN 198
                        D + L + L  L  L L + T+    AL  L     L++ N    + 
Sbjct: 124 IT-----------DIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 171

Query: 199 TQSLC--LRHLN-NSNLLSAFS-FASLRHLWTLHLYFNDF------------EELNIDAG 242
             +    L  L+ +SN +S  S  A L +L +L    N              +EL+++  
Sbjct: 172 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 231

Query: 243 EVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEIS 302
           ++K I       +L  + +  ++  +   L    +   +++   Q +  I  +  L  ++
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALT 290

Query: 303 AEVMDNLILFG-RLEYLI-LEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQ 359
                NL L   +LE +  +  L+NL  +   +     +  +      +L++L    N+
Sbjct: 291 -----NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNK 342

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           ++    +     +T + L +N +++++      +L  L L+ N++  +S     S+  L+
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRI 123
            L F  N+ + ++   + NL ++  L      I+ L   L  L  +  L L      +  
Sbjct: 335 RLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQA-WTNA 390

Query: 124 PQPVISDLKMLRALR 138
           P    +++ +   ++
Sbjct: 391 PVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 54/355 (15%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           LT    +    ++  + +  N I ++T      +L  L L +N +  +      ++ +L 
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRI 123
            L    N  + ++   +  L SLQ L      +T L   L  L  L+ L++     +S I
Sbjct: 138 RLELSSNT-ISDIS-ALSGLTSLQQLSFG-NQVTDL-KPLANLTTLERLDISSNK-VSDI 192

Query: 124 PQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQ 179
              V++ L  L +L                        +  L  L  L+L    L   + 
Sbjct: 193 --SVLAKLTNLESLIATNNQISDITP------------LGILTNLDELSLNGNQLK-DIG 237

Query: 180 IFGALQRL----LNYCNSSRSINTQSL-CLRHLN-NSNLLSAFS-FASLRHLWTLHLYFN 232
              +L  L    L     S       L  L  L   +N +S  S  A L  L  L L  N
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297

Query: 233 DF------------EELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKV 280
                           L +    +  I        LQ+++   +K    + L        
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINW 357

Query: 281 IRISNCQ--RLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSY 333
           +   + Q   L  + ++ ++ ++     D            +    N+   ++  
Sbjct: 358 LSAGHNQISDLTPLANLTRITQLGLN--DQ-----AWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 12/113 (10%), Positives = 39/113 (34%), Gaps = 3/113 (2%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           ++    +    ++ R+    N + +++      ++  L    N +  ++     ++  + 
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
            L         N P+     VS+ +   + TG    P  +    +    ++ +
Sbjct: 379 QLGLNDQA-WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 27  QNLTETPTCP-HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLV 84
           +++   P+ P   + L L   HL T+ ++ F ++ ++  +    + +L+ L      NL 
Sbjct: 21  KDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 85  SLQHLDLSWT-GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQ-PVISDLKMLRALRMFE 141
            + H+++  T  +T +  + LK L  LK L +  T  L   P    +    +   L + +
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITD 139

Query: 142 CGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG--ALQRL-LNYCNSSRSIN 198
               +         G     +   L L +    +V    F    L  + LN       I+
Sbjct: 140 -NPYMTSIPVNAFQGLCNETLT--LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 199 TQSL-----CLRHLN-NSNLLSAFSFASLRHLWTLHL 229
             +          L+ +   ++A     L HL  L  
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 39/266 (14%), Positives = 88/266 (33%), Gaps = 18/266 (6%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NL 83
             L   P         L +  N++  +  +   S++ LR+LI  +NR ++ L + +    
Sbjct: 10  NGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFN 68

Query: 84  VSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP-VISDLKMLRALRMFEC 142
             L++LDLS   +  +       VNLK L+L +      +P      ++  L+ L +   
Sbjct: 69  QELEYLDLSHNKLVKISCHP--TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT 125

Query: 143 GFK---------VEQEADRILFGDSEVLVEELLALKHLNLLTVTL-QIFGALQRLLNYCN 192
             +         +      ++ G++    E+   L+  N  ++ +          +   +
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 193 SSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRG 252
                N +   ++ +   N  S F     +      L       +        RI +   
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 253 FHSLQKVYINYSKFRHATWLVLAPRA 278
             ++    I+  K +          +
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYS 271

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 34/206 (16%)

Query: 37  HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSWTG 95
           ++       +    V       ++    L F  N  L +       +L  L+ L L    
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQ 359

Query: 96  ITTLPIE---LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR 152
           +  L         + +L+ L++          +   S  K L +L M             
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT------D 413

Query: 153 ILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN-NSN 211
            +F      ++ L  L    + ++  Q+                       L+ LN  SN
Sbjct: 414 TIFRCLPPRIKVLD-LHSNKIKSIPKQVVKLEA------------------LQELNVASN 454

Query: 212 LLSAF---SFASLRHLWTLHLYFNDF 234
            L +     F  L  L  + L+ N +
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 28/249 (11%), Positives = 72/249 (28%), Gaps = 30/249 (12%)

Query: 17  TRMSLMQNAIQNLTETPT---CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             + L  NA   L           L+ L L + HL   S      +   +VL+ L     
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 74  ENLPLGILNLVSLQHLDLSWTGITT----LPIELKYLVNLKCLNLEYTFCLSRIPQPVIS 129
           E      L   + + L + +         L + +K + NL+  N++     ++    +  
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN 189
             K+    ++        +          +++      + + ++  V LQ     +    
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 190 YCNSSRSINTQSLCLR---------------------HLNNSNLLSAFSFASLRHLWTLH 228
              S ++++   +                         ++ + ++     + +     L 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 229 LYFNDFEEL 237
              N   + 
Sbjct: 331 FSNNLLTDT 339

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             +T ++L    + +LT      +++ L +++ H    +      +++L  L  +     
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
            +    +  L SL  LD+S +      +  +  L  +  ++L Y   ++ I    +  L 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLP 159

Query: 133 MLRAL 137
            L++L
Sbjct: 160 ELKSL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 21/104 (20%), Positives = 42/104 (40%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             I  +++      N        +L  L +    + +        + SL +L   ++   
Sbjct: 66  HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYT 117
           +++   I  L  +  +DLS+ G  T  + LK L  LK LN+++ 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 33/178 (18%)

Query: 60  ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
           ++ +  +           +    + SL ++ L+   +T L   ++Y  N+K L +     
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-- 76

Query: 120 LSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL--TVT 177
                    + +  L  L               +       L   L +L  L++      
Sbjct: 77  --HATN--YNPISGLSNLERLRIMG------KDVTSDKIPNL-SGLTSLTLLDISHSAHD 125

Query: 178 LQIFGALQRLLNYCNSSRSINTQSLCLRHLN---NSNLLSAFSFASLRHLWTLHLYFN 232
             I   +  L                +  ++   N  +       +L  L +L++ F+
Sbjct: 126 DSILTKINTLPK--------------VNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
           T + L +N +   +         L  L L    L  +      ++  L  L  L +  L+
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL-DLSHNQLQ 90

Query: 75  NLPLGILNLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDLKM 133
           +LPL    L +L  LD+S+  +T+LP+   + L  L+ L L+    L  +P  +++    
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPK 149

Query: 134 LRALRM 139
           L  L +
Sbjct: 150 LEKLSL 155

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTG 95
                L L  N L T S         L  L  L    L  L +    L  L  LDLS   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQL-NLDRAELTKLQVD-GTLPVLGTLDLSHNQ 88

Query: 96  ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRM 139
           + +LP+  + L  L  L++ +   L+ +P   +  L  L+ L +
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 15  EITRMSLMQNAIQNLTE---TPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
           E+  + L  N ++ L     TPT P L  L L +N+L  +     + + +L  L  L   
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTL-LLQEN 182

Query: 72  SLENLPLGILNLVSLQHLDLS 92
           SL  +P G      L    L 
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLH 203

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
           T + +  N + +L          L+ L+L  N L T+          L  L  L N +L 
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-SLANNNLT 161

Query: 75  NLPLGIL-NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNL 114
            LP G+L  L +L  L L    + T+P        L    L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 62/349 (17%), Positives = 115/349 (32%), Gaps = 41/349 (11%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI-LNL 83
           +NLT  P    P  +AL L  N +  +       ++ LRVL   +NR + +L   + L  
Sbjct: 41  RNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFN 99

Query: 84  VSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP-VISDLKMLRALRMFEC 142
             L++LD+S   +  +      + +L+ L+L +      +P      +L  L  L +   
Sbjct: 100 QDLEYLDVSHNRLQNISC--CPMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGL--- 153

Query: 143 GFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSL 202
                          ++    +LL + HL+L  + L     L         + S+   + 
Sbjct: 154 -------------SAAKFRQLDLLPVAHLHLSCILLD----LVSYHIKGGETESLQIPNT 196

Query: 203 CLRHL--NNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH----SL 256
            + HL  + ++L S     S+  L  L L      + N           TRG      +L
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 257 QKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLIL----- 311
           Q +   +               + + I N   + E I  E+       +   +I      
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 312 -FGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQ 359
            F   +  +      +     S    P +  +C    +    L    N 
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 24/242 (9%)

Query: 16  ITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
              +SL QN+I  L          LR L L  N + ++  + F     L  L  + +  L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL-DVSHNRL 112

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
           +N+      + SL+HLDLS+     LP+  E   L  L  L L       ++    ++ L
Sbjct: 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL-SAAKFRQLDLLPVAHL 169

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVL--------------VEELLALKHLNLLTVT 177
            +   L           E + +   ++ VL                 + AL HL L  + 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 178 LQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSN--LLSAFSFASLRHLWTLHLYFNDFE 235
           L      + +      +R     ++ L+H+  +    +  F F   R +  L++Y     
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 236 EL 237
           E 
Sbjct: 290 ER 291

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 13  WKEITRMSLMQNAIQNLTETPTCP-HLRALFLHSNHLGT----VSNNFFHSMASLRVLIF 67
            K +  + L +N ++N  +      ++ +L      L +      +       S+ VL  
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN- 434

Query: 68  LYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPV 127
           L +  L       L    ++ LDL    I ++P ++ +L  L+ LN+     L  +P  V
Sbjct: 435 LSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGV 492

Query: 128 ISDLKMLRALRMF 140
              L  L+ + + 
Sbjct: 493 FDRLTSLQYIWLH 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 14/224 (6%)

Query: 17  TRMSLMQNAIQNLTETPT---CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             + L  N    L           L  L L +     +       +    +L+ L +  +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVN-LKCLNLEYTFCLSRIPQPVISDL- 131
           +      L + +   L L +   +   +++   VN L  L L          Q +++ L 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 132 KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYC 191
           ++ R   +     +  +   +      +        +++LN+  +T+      +      
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEF---- 297

Query: 192 NSSRSINTQSLCLRHLNNSNLLSAFS--FASLRHLWTLHLYFND 233
            +      +SL + H+ N   L +    ++    +    L  +D
Sbjct: 298 -TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN-L 83
           + LTE PT     +  + L  N +  +    F     LR +  L N  +  L       L
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRI-DLSNNQISELAPDAFQGL 79

Query: 84  VSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFE 141
            SL  L L    IT LP  L + L +L+ L L     ++ +      DL  L  L +++
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD 137

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 14  KEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
           K++ R+ L  N I  L          L +L L+ N +  +  + F  + SL++L  L   
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL-LLNAN 114

Query: 72  SLENLPLGIL-NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNL 114
            +  L +    +L +L  L L    + T+       L  ++ ++L
Sbjct: 115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           +     I     +  ++L  N + +++      +L  L L  N L ++ N  F  + +L+
Sbjct: 53  IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 64  VLIFLYNRSLENLPLGILN-LVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEY 116
            L  L    L++LP G+ + L +L +L+L+   + +LP  +   L NL  L+L Y
Sbjct: 113 EL-VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 3   GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASL 62
            +T A        I ++    + I+++      P++R L L  N L  +S      + +L
Sbjct: 30  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNL 87

Query: 63  RVLIFLYNRSLENLPLGILN-LVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEY 116
             L  L    L++LP G+ + L +L+ L L    + +LP  +   L NL  LNL +
Sbjct: 88  TYL-ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 52/217 (23%)

Query: 35  CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR-------SLENLPLGILNLVSLQ 87
             ++ ++ L +N +       F + + L  +  + N        SL++      N   L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 88  HLDLSWTGITTLPIELKY--LVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFK 145
            +DL +  +T L  + +   L  L  ++L Y    S+ P     +   L+   +      
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFP-TQPLNSSTLKGFGI------ 543

Query: 146 VEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLR 205
                                            +        +  C S          L 
Sbjct: 544 ------------------------RNQRDAQGNRTLREWPEGITLCPS----------LT 569

Query: 206 HLN-NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
            L   SN +   +     ++  L +  N    +++  
Sbjct: 570 QLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 25/151 (16%)

Query: 8   PRIGMWKEITRMSLMQNAIQNLTETP-----TCPHLRALFLHSNHLGTVSNNF------- 55
           P       ++ ++L  N    +++ P     T   L ++ L  N L  +  N        
Sbjct: 427 PTPFKGINVSSINLSNN---QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 56  FHSMASLRVLIFLYNRSLENLP--LGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLN 113
           F +   L  +   +N+ L  L        L  L  +DLS+   +  P +      LK   
Sbjct: 484 FKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542

Query: 114 LEYTFCLSR------IPQPVISDLKMLRALR 138
           +               P   I+    L  L+
Sbjct: 543 IRNQRDAQGNRTLREWP-EGITLCPSLTQLQ 572

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 30/231 (12%), Positives = 75/231 (32%), Gaps = 35/231 (15%)

Query: 20  SLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFH------SMASLRVLIFLYNRSL 73
            L+++ I +  +  +      + L    +G +SNN          +  LR      +  +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKM 133
                      + ++         T  ++   L +L  + +     L+++P   +  L  
Sbjct: 220 AENICEAWENENSEYAQQY----KTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPE 274

Query: 134 LRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQIFGALQRLLN 189
           ++ + +        ++        ++        ++ + +    L  T  +  +LQ++  
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALAD--APVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331

Query: 190 YCNSSRSINTQSLCLRHLN-NSNLLSAF--SFASLRHLWTLHLYFNDFEEL 237
                         L  L    N L     +F S   L +L+L +N   E+
Sbjct: 332 --------------LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 10  IGMWKEITRMSLMQNAIQNLTETP------TCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
                 +T + L  N    LT+        T P+L  + L  N           + ++L+
Sbjct: 484 FKNTYLLTSIDLRFN---KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLK 539

Query: 64  VLIFLYNRSLEN------LPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
                  R  +        P GI    SL  L +    I  +  ++    N+  L+++ 
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 23/228 (10%), Positives = 60/228 (26%), Gaps = 45/228 (19%)

Query: 28  NLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ 87
                  C                 +  + ++  L  +      +L  LP  +  L  +Q
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 88  HLDLSWTGITTLPI---------ELKYLVNLKCLNLEYTFCLSRIPQPV-ISDLKMLRAL 137
            ++++     +            +      ++ + + Y   L   P    +  +K L  L
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGML 335

Query: 138 RMFECGFKVEQEADRILFGDSEVLVEELLALKHL-------NLLT-VTLQIFGALQRLLN 189
                                E  +    +   L       N +T +     G  +++  
Sbjct: 336 ECLYNQL--------------EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV-- 379

Query: 190 YCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
                     ++L   H     + + F   S+  +  +   +N+   +
Sbjct: 380 ----------ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 28/267 (10%), Positives = 63/267 (23%), Gaps = 60/267 (22%)

Query: 35  CPHLRALFLHSNHL-GTVSNNFFHSMASLRVLIFLYNR----SLENLPLGILNLVSLQHL 89
              +  L L      G V +     +  L VL    +          P GI   +S +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 90  DLSWTGITTLPIELKYLVNLKCLNLEY----------------------------TFCLS 121
                        + Y       +L                              +  ++
Sbjct: 139 QKMRMHYQ--KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 122 RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIF 181
            +    +  L  LR   M                 ++     E    ++          +
Sbjct: 197 FVS-KAVMRLTKLRQFYMGNSP----------FVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 182 GALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241
             L+ L              + + +  N   L      +L  +  +++  N         
Sbjct: 246 DNLKDL------------TDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLK 292

Query: 242 GEVKRIRETRGFHSLQKVYINYSKFRH 268
            + + + +      +Q +YI Y+  + 
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKT 319

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
            +IT + L  N ++N++       ++ L L S  +  V+      +++L+VL    N+ +
Sbjct: 85  TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ-I 141

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKM 133
            N+   +  L +LQ+L +    ++ L   L  L  L  L  +    +S I    ++ L  
Sbjct: 142 TNIS-PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISP--LASLPN 196

Query: 134 LRAL 137
           L  +
Sbjct: 197 LIEV 200

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             IT +S     +  +       +L  L L  N +  ++     ++  +  L    N  L
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-L 97

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
           +N+   I  L S++ LDL+ T IT +   L  L NL+ L L+ 
Sbjct: 98  KNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDL 138

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             +  +S+    + +LT       L  L    N +  +S     S+ +L  +    N+ +
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ-I 207

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISD 130
            ++   + N  +L  + L+   IT  P+   Y  NL   N+      + I    ISD
Sbjct: 208 SDVS-PLANTSNLFIVTLTNQTITNQPVF--YNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR-- 71
             I ++    + I+++      P++  LFL+ N L  +      ++ +L  L    N+  
Sbjct: 46  NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            L +L     +L  L+ L L   GI+ +   L +L  L+ L L     ++ I   V+S L
Sbjct: 104 DLSSLK----DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI--TVLSRL 155

Query: 132 KMLRAL 137
             L  L
Sbjct: 156 TKLDTL 161

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 9   RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFL 68
               + ++  + L    +  L        +  L L  N L  +      ++  L VL   
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQAS 494

Query: 69  YNRSLENLPLGILNLVSLQHLDLSWTGITTLP--IELKYLVNLKCLNLE 115
            N  LEN+  G+ NL  LQ L L    +        L     L  LNL+
Sbjct: 495 DNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 12  MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
           M          +  ++N         +R L L    L  + +     +  +  L   +NR
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR 474

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQ-PVISD 130
            L  LP  +  L  L+ L  S   +  +   +  L  L+ L L     L +      +  
Sbjct: 475 -LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVS 531

Query: 131 LKMLRAL 137
              L  L
Sbjct: 532 CPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 14  KEITRMSLMQNAIQNLTE-TPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRS 72
           + +  +   +  +Q  +      P   A          + N+      +   ++ L ++ 
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 73  LENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
           L  L   +  L+ + HLDLS   +  LP  L  L  L+ L    
Sbjct: 453 LTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 17  TRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE 74
            ++ L    +  L++        L  L L  N L T+S   F  +  L  L  L N  L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL-GLANNQLA 96

Query: 75  NLPLGIL-NLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDLK 132
           +LPLG+  +L  L  L L    + +LP  +   L  LK L L     L  IP      L 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLT 155

Query: 133 MLRALRM 139
            L+ L +
Sbjct: 156 NLQTLSL 162

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 23  QNAIQNLTETPTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL 81
             A+ +L   P   +L  L++ +  HL  +       +  LR L  + +  L  +     
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAF 76

Query: 82  -NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLE 115
                L  L+LS+  + +L  +    ++L+ L L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 35  CPHLRALFLHSNHL-GTVSNNFFHSMASLRVLIFLYNRSLE-NLPLGILNLVSLQHLDLS 92
              LR L L  N L G +       + +L  LI  +N  L   +P G+ N  +L  + LS
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLS 498

Query: 93  WTGIT-TLPIELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRM 139
              +T  +P  +  L NL  L L      S  IP   + D + L  L +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNS-FSGNIP-AELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 38/211 (18%)

Query: 35  CPHLRALFLHSNHL-GTVSNNFFHSMASLRVLIFLYNR---SLENLPLGILNLVSLQHLD 90
           C  L+ L + SN L      +    + SL VL    N    +     +       L+HL 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 91  LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEA 150
           +S   I +  +++   VNL+ L++      + IP   + D   L+ L +           
Sbjct: 185 ISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKL------ 235

Query: 151 DRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLC-LRHLN- 208
                  S      +     L LL             ++       I    L  L++L+ 
Sbjct: 236 -------SGDFSRAISTCTELKLL------------NISSNQFVGPIPPLPLKSLQYLSL 276

Query: 209 NSNLLS----AFSFASLRHLWTLHLYFNDFE 235
             N  +     F   +   L  L L  N F 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 40/224 (17%)

Query: 35  CPHLRALFLHSNHL-GTVSNNF--FHSMASLRVLIFLYNRSLE-NLPLGILNLVSLQHLD 90
              L  L L +N + G     +        L+ L    N  +  ++ +     V+L+ LD
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLD 206

Query: 91  LSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQE 149
           +S    +  +P  L     L+ L++             IS    L+ L +    F     
Sbjct: 207 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQF----- 259

Query: 150 ADRILFGDSEVLVEELLALKHLNL----LTVTL--QIFGALQRL----LNYCNSSRSI-- 197
                     +    L +L++L+L     T  +   + GA   L    L+  +   ++  
Sbjct: 260 -------VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 198 ---NTQSLCLRHLNNSNL---LSAFSFASLRHLWTLHLYFNDFE 235
              +   L    L+++N    L   +   +R L  L L FN+F 
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 37/220 (16%), Positives = 67/220 (30%), Gaps = 34/220 (15%)

Query: 35  CPHLRALFLHSNHL-GTVSNNFFHSMASLRVLIFLYNRSLENLP--LGILNLVSLQHLDL 91
              L +LFL ++H+ G+VS   F   ASL  L    N     +     + +   L+ L++
Sbjct: 76  LTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133

Query: 92  SWTGIT-TLPIELKY-LVNLKCLNLEYTFCLSRIPQPV--ISDLKMLRALRMFECGFKVE 147
           S   +     +     L +L+ L+L                     L+ L +        
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--- 190

Query: 148 QEADRILFGDSEVLVEELLALKHLNL----LTVTLQIFGALQRL----LNYCNSSRSINT 199
             +  +            + L+ L++     +  +   G    L    ++    S   + 
Sbjct: 191 --SGDVDVS-------RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241

Query: 200 QSLCLRHLNN----SNLLS-AFSFASLRHLWTLHLYFNDF 234
                  L      SN          L+ L  L L  N F
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 30/183 (16%), Positives = 53/183 (28%), Gaps = 26/183 (14%)

Query: 70  NRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPV-I 128
           N     +   +L+L  L+ L LS + I       K   +L  L+L        +     +
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122

Query: 129 SDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL--------LTVTLQI 180
                L+ L +               F        +L +L+ L+L          V   +
Sbjct: 123 GSCSGLKFLNVSSNTLD---------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 181 FGALQRL----LNYCNSSRSINTQSLC-LRHLN-NSNLLSAF--SFASLRHLWTLHLYFN 232
                 L    ++    S  ++      L  L+ +SN  S           L  L +  N
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233

Query: 233 DFE 235
              
Sbjct: 234 KLS 236

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 21  LMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI 80
                I  +   P   +     L    +  + +     ++ ++      +  +++L  G+
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN-IQSLA-GM 59

Query: 81  LNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
               +L+ L LS   I+ L   LK L  L+ L++  
Sbjct: 60  QFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNR 94

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSL 73
             +   +   + IQ+L       +L+ L L  N +  +S      +  L  L    NR L
Sbjct: 41  SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-L 97

Query: 74  ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
           +NL    +    L  L L    +      L +L NL+ L++  
Sbjct: 98  KNLN--GIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN 137

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 45/238 (18%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
                +  +  + + + L +  + +L +    P +  L +  N L ++        ASL 
Sbjct: 49  AVSLLKECLINQFSELQLNRLNLSSLPDN-LPPQITVLEITQNALISLPELP----ASLE 103

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRI 123
            L    NR L  LP    +L   +HLD+    +T LP        L+ +N +    L+ +
Sbjct: 104 YLDACDNR-LSTLPELPASL---KHLDVDNNQLTMLPELPA---LLEYINADNNQ-LTML 155

Query: 124 PQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL----LTVTLQ 179
           P         L  L +                     L E   +L+ L++    L     
Sbjct: 156 P----ELPTSLEVLSVRNNQL--------------TFLPELPESLEALDVSTNLLESLPA 197

Query: 180 IFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237
           +              R    +   + H+         +  SL    T+ L  N     
Sbjct: 198 VPVRNHHSEETEIFFRCRENR---ITHIPE-------NILSLDPTCTIILEDNPLSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 15/127 (11%)

Query: 13  WKEITRMSLMQNAIQNLTETP---TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLY 69
           W +  + +L                      L L+  +L ++ +N       + VL    
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP---PQITVLEITQ 89

Query: 70  NRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVIS 129
           N  L +LP    +L   ++LD     ++TLP     L +L   N +    L+ +P  + +
Sbjct: 90  NA-LISLPELPASL---EYLDACDNRLSTLPELPASLKHLDVDNNQ----LTMLP-ELPA 140

Query: 130 DLKMLRA 136
            L+ + A
Sbjct: 141 LLEYINA 147

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 17  TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRS--LE 74
             +S+  N +  L E P    L AL + +N L ++      +  S    IF   R   + 
Sbjct: 163 EVLSVRNNQLTFLPELPE--SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 75  NLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNL 114
           ++P  IL+L     + L    +++   E       +    
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 19  MSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN--RSLENL 76
           + L    I+   +       R L L    +  +  N   ++     + F  N  R L+  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 77  PLGILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNL 114
           P     L  L+ L ++   I  +     + L +L  L L
Sbjct: 61  P----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 3   GLTGAPRIGMWKEITRMSLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVSNNFFHSMA 60
                P  G+      + L  N I  L      +  +L+ L+L SN LG +    F S+ 
Sbjct: 30  RHASVP-AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88

Query: 61  SLRVLIFLYNRSLENLPLGILN-LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFC 119
            L VL  L    L  LP  + + LV L+ L +    +T LP  ++ L +L  L L     
Sbjct: 89  QLTVL-DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-DQNQ 146

Query: 120 LSRIPQPVISDLKMLRALRMF 140
           L  IP      L  L    +F
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLF 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 35  CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL----PLGILNLVSLQHLD 90
              +  L L   +L         S+A+L  L FLY   + NL    P  I  L  L +L 
Sbjct: 49  TYRVNNLDLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 91  LSWTGIT-TLPIELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRM 139
           ++ T ++  +P  L  +  L  L+  Y   LS  +P P IS L  L  +  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLP-PSISSLPNLVGITF 156

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 45/300 (15%), Positives = 97/300 (32%), Gaps = 53/300 (17%)

Query: 56  FHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLE 115
                   +L+   +   ++LP  +L   + + L +    I           ++ C  L 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 116 YTF--CLSRIPQPVISDLK-MLRALRMFECGFKVEQEADRILFGDS-----EVLVEEL-- 165
                 L+ + +P  ++ + M   L +F     +      +++ D       V+V +L  
Sbjct: 357 TIIESSLNVL-EP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 166 --LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRH 223
             L  K     T++  I      L     +  ++        H    +++  ++      
Sbjct: 414 YSLVEKQPKESTIS--IPSIYLELKVKLENEYAL--------H---RSIVDHYNIPKTFD 460

Query: 224 LWTLHLYFND---FEELNIDAGEVKRIRETRGFHSLQKVYINYS----KFRHATWLVLAP 276
              L   + D   +  +      +K I         + V++++     K RH +    A 
Sbjct: 461 SDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 277 RAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKS--IHSSYL 334
                  S    LQ++   +        + DN   + RL   IL+ L  ++   I S Y 
Sbjct: 518 G------SILNTLQQLKFYKPY------ICDNDPKYERLVNAILDFLPKIEENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 70/452 (15%), Positives = 125/452 (27%), Gaps = 169/452 (37%)

Query: 67  FLYN--RSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIP 124
           FL +  ++ +  P  +  +   Q  D  +          KY V             SR  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFA---KYNV-------------SR-L 134

Query: 125 QPVISDLKMLRALR---------MFECG-----------FKVEQEADRILF-------GD 157
           QP +   + L  LR         +   G           +KV+ + D  +F         
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 158 SEVLVEELLALKHL-------------NLLTVTLQIFGALQRLL---NYCNSSRSINTQS 201
            E ++E L  L +              N+      I   L+RLL    Y N         
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------- 247

Query: 202 LCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELN-IDAGEVKRIR---ETRGFH--- 254
           L L ++ N+   +AF+ +  + L T        +  + + A     I     +       
Sbjct: 248 LVLLNVQNAKAWNAFNLSC-KILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 255 --SLQKVYINYSKF---RHATW---LVLAPRAKVIRI----------SNCQRLQEIISM- 295
             SL   Y++       R         L+  A+ IR            NC +L  II   
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 296 -------------EKLG------EISAEVMDNLILFGRLEY----LILEGLQNLK----- 327
                        ++L        I   ++   +++  +      +++  L         
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 328 ------SIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKII-----IKGQDRWWNE 376
                 SI S YL                 K+ L+    L + I+      K  D     
Sbjct: 421 PKESTISIPSIYL---------------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 377 LQWDD------------QATQNASLACFQSLY 396
             + D                   +  F+ ++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 23  QNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN 82
            N  +    T     L  L   +  L +++N     +  L+ L    NR    L +    
Sbjct: 29  SNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEK 86

Query: 83  LVSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLE 115
             +L HL+LS   I  L     LK L NLK L+L 
Sbjct: 87  CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 3   GLTGAPRIGMWKEITRMSLMQNAIQNLTETP--TCPHLRALFLHSNHLGTVSNNFFHSMA 60
           G T  P  G+  + T + L  N++++L          L  L+L  N L ++ N  F+ + 
Sbjct: 18  GRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76

Query: 61  SLRVLIFLYNRSLENLPLGILN-LVSLQHLDLSWTGITTLPIEL-KYLVNLKCLNLEYTF 118
           SL  L  L    L++LP G+ + L  L+ L L+   + +LP  +   L  LK L L Y  
Sbjct: 77  SLTYL-NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQN 134

Query: 119 CLSRIPQPVISDLKMLRALRMF 140
            L  +P  V   L  L+ + + 
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLH 156

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 14  KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR-- 71
           K    ++L  N I+ ++      +LR L L  N +  +  N      +L  L   YN+  
Sbjct: 48  KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIA 106

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLE 115
           SL  +      LV+L+ L +S   IT      +L  L  L+ L L 
Sbjct: 107 SLSGIE----KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 18/131 (13%)

Query: 15  EITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR-- 71
           E   +  M   I+ +  T  T    + L L +N++  +S+     M +LR+L    N   
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIK 83

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            +ENL        +L+ L +S+  I +L   ++ LVNL+ L +             I++ 
Sbjct: 84  KIENLD---AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK---------ITNW 130

Query: 132 KMLRALRMFEC 142
             +  L   + 
Sbjct: 131 GEIDKLAALDK 141

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 3   GLTGAPRIGMWKEITRMSLMQNAIQNL-TETPTCPHLRALFLHSNHLGTVSNNFFHSMAS 61
           GL   P+ G+ +++T + L  N    +  E     HL  + L +N + T+SN  F +M  
Sbjct: 21  GLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 62  LRVLIFLYNRSLENLPLGILN-LVSLQHLDLS 92
           L  LI  YNR L  +P    + L SL+ L L 
Sbjct: 80  LLTLILSYNR-LRCIPPRTFDGLKSLRLLSLH 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 26  IQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVS 85
           I+ LT      +L  L L +  L +VSN     +  L+ L    NR    L +    L +
Sbjct: 41  IEGLTAE--FVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 86  LQHLDLSWTGITTLP--IELKYLVNLKCLNLE 115
           L HL+LS   +  +     LK L  LK L+L 
Sbjct: 97  LTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 36  PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI----LNLVSLQHLDL 91
           P L+ L +   H    S        +L  L    N  L    L      L   +LQ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 92  SWTGITTLPIE----LKYLVNLKCLNL 114
              G+ T            V L+ L+L
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDL 235

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 41  LFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN-LVSLQHLDLSWTGITTL 99
           L L SN L ++ +  F  +  L  L  L    +++LP G+ + L  L  L L    + +L
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKL-SLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 100 PIEL-KYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMF 140
           P  +   L  LK L L  T  L  +P  +   L  L+ + + 
Sbjct: 92  PNGVFDKLTQLKELAL-DTNQLKSVPDGIFDRLTSLQKIWLH 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	396
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.18
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.86
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.81
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.8
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.09
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.33

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=5e-28  Score=223.65  Aligned_cols=308  Identities=16%  Similarity=0.165  Sum_probs=243.2

Q ss_pred             CCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCC
Q 044468            4 LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNL   83 (396)
Q Consensus         4 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l   83 (396)
                      +.++..+..++++++|+++++.+..++....+++|++|++++|.+..++.  +..+++|++|++++| .++.++ .+.++
T Consensus        34 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l  109 (347)
T 4fmz_A           34 VTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNL  109 (347)
T ss_dssp             TTSEECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTC
T ss_pred             cCCcccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCC
Confidence            44455566788999999999999988777889999999999999988876  899999999999999 777765 58899


Q ss_pred             CcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhH
Q 044468           84 VSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVE  163 (396)
Q Consensus        84 ~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (396)
                      ++|++|++++|.++.++. +.++++|++|++++|.....++.  +..+++|++|++.+|.+...               .
T Consensus       110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~---------------~  171 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV---------------T  171 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC---------------G
T ss_pred             CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc---------------h
Confidence            999999999999998876 88999999999999866665554  88999999999999987763               2


Q ss_pred             hhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccc
Q 044468          164 ELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGE  243 (396)
Q Consensus       164 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~  243 (396)
                      .+..+++|+.|++..+.......      +..+++|+.+++.++......   .+..+++|++|+++.+.+.++..  . 
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~-  239 (347)
T 4fmz_A          172 PIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP--L-  239 (347)
T ss_dssp             GGGGCTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG--G-
T ss_pred             hhccCCCCCEEEccCCccccccc------ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCCcc--h-
Confidence            27888999999998887765543      445666999999876433222   26788999999999887775432  1 


Q ss_pred             ccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468          244 VKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL  323 (396)
Q Consensus       244 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  323 (396)
                             ..+++|++|++.+|.++.++.+..+++|++|++++|. ++++ .             ....+++|+.|++++|
T Consensus       240 -------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-~-------------~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          240 -------ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ-ISDI-S-------------VLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             -------TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC-G-------------GGGGCTTCSEEECCSS
T ss_pred             -------hcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc-cCCC-h-------------hhcCCCCCCEEECcCC
Confidence                   1789999999999988888888889999999999885 5544 1             4567899999999998


Q ss_pred             cccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468          324 QNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ  370 (396)
Q Consensus       324 ~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~  370 (396)
                      .--...+.....+++|+.|++.+|+ ++.+|+  ....+.++.+...
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSS
T ss_pred             cCCCcChhHhhccccCCEEEccCCc-cccccC--hhhhhccceeehh
Confidence            5333333345568999999999986 777766  2333566665533

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2.6e-27  Score=218.86  Aligned_cols=291  Identities=15%  Similarity=0.195  Sum_probs=236.5

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      .++..++.+..+++|++|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++| .+..++. +.
T Consensus        54 ~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~  129 (347)
T 4fmz_A           54 EKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-LA  129 (347)
T ss_dssp             SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-GT
T ss_pred             CccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-hc
Confidence            3566778889999999999999999988767899999999999999988764  899999999999999 7777766 88


Q ss_pred             CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468           82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL  161 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  161 (396)
                      .+++|++|++++|.....+..+..+++|++|++++|. ...++.  +..+++|++|++.+|.+...              
T Consensus       130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~--------------  192 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDI--------------  192 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCC--------------
T ss_pred             cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccccc--------------
Confidence            9999999999999544344458999999999999984 444444  78999999999999988763              


Q ss_pred             hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecc
Q 044468          162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA  241 (396)
Q Consensus       162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~  241 (396)
                       ..+..+++|+.+++..+.......      +..+++|+.|+++++.-.....   +..+++|++|+++.+.+.++.  .
T Consensus       193 -~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~  260 (347)
T 4fmz_A          193 -SPLASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN--A  260 (347)
T ss_dssp             -GGGGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--G
T ss_pred             -ccccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh--h
Confidence             237889999999999887765543      4456679999999865433222   778899999999988887642  1


Q ss_pred             ccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeecc
Q 044468          242 GEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILE  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  321 (396)
                      .        ..+++|++|++++|.+++++.+..+++|++|++++|. +.....            ..+..+++|++|+++
T Consensus       261 ~--------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          261 V--------KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNEDM------------EVIGGLTNLTTLFLS  319 (347)
T ss_dssp             G--------TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGGGH------------HHHHTCTTCSEEECC
T ss_pred             H--------hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCcCh------------hHhhccccCCEEEcc
Confidence            1        2789999999999999988888999999999999986 433322            145679999999999


Q ss_pred             CCcccccccCCCCCCCCcceEEeccCc
Q 044468          322 GLQNLKSIHSSYLPFPRLKEICVWKCA  348 (396)
Q Consensus       322 ~~~~l~~~~~~~~~~~~L~~L~i~~c~  348 (396)
                      +|+ +..++. ...+++|+.|++.+|+
T Consensus       320 ~n~-l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          320 QNH-ITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             SSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred             CCc-cccccC-hhhhhccceeehhhhc
Confidence            996 665544 6679999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=7.8e-27  Score=223.59  Aligned_cols=328  Identities=20%  Similarity=0.192  Sum_probs=227.9

Q ss_pred             CCCCCCCccCCCccccEEEccccccccc-cCC-CCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccc-c
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNL-TET-PTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENL-P   77 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l-~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l-~   77 (396)
                      .+++.+|.+  .+++++|++++|.+..+ +.. ..+++|++|++++|.+. .++...+..+++|++|++++| .+..+ |
T Consensus        20 ~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~   96 (455)
T 3v47_A           20 RGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLET   96 (455)
T ss_dssp             SCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECT
T ss_pred             CCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccCh
Confidence            466777763  37899999999999986 444 89999999999999885 676665899999999999999 55544 7


Q ss_pred             ccccCCCcCCEEEccCCCCCc-cchh--hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhc
Q 044468           78 LGILNLVSLQHLDLSWTGITT-LPIE--LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRIL  154 (396)
Q Consensus        78 ~~l~~l~~L~~L~l~~~~l~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~  154 (396)
                      ..++++++|++|++++|.++. .+..  +.++++|++|++++|......|...+..+++|++|++.+|.+...       
T Consensus        97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------  169 (455)
T 3v47_A           97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI-------  169 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-------
T ss_pred             hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-------
Confidence            789999999999999999884 4444  889999999999999666655666588999999999999988764       


Q ss_pred             cCCchhhhHhhh----------------------------------cCCCCcEEEEEecccchhhhhhhccCCCCCcccc
Q 044468          155 FGDSEVLVEELL----------------------------------ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQ  200 (396)
Q Consensus       155 ~~~~~~~~~~l~----------------------------------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~  200 (396)
                            ....+.                                  .+++|+.|+++.+.......... ......++|+
T Consensus       170 ------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~  242 (455)
T 3v47_A          170 ------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQ  242 (455)
T ss_dssp             ------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-HHHTTTCCEE
T ss_pred             ------ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-hcccccccee
Confidence                  122222                                  22344444444443321110000 0000112355


Q ss_pred             eEEecccCCCcc---------cchhhhh--ccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC
Q 044468          201 SLCLRHLNNSNL---------LSAFSFA--SLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA  269 (396)
Q Consensus       201 ~L~l~~~~~~~~---------~~~~~l~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  269 (396)
                      .|.+.++.....         .....+.  .+++|+.|+++.+.+..+.....        +.+++|++|++++|.++.+
T Consensus       243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--------SHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--------TTCTTCCEEECTTSCCCEE
T ss_pred             eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc--------ccCCCCCEEECCCCccccc
Confidence            555543321110         0000111  12577778887777665433222        2688999999999977775


Q ss_pred             C--ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc-cCCCCCCCCcceEEecc
Q 044468          270 T--WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI-HSSYLPFPRLKEICVWK  346 (396)
Q Consensus       270 ~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~  346 (396)
                      +  .++.+++|++|+++++. +..+..            ..+..+++|++|+++++. +..+ +.....+++|+.|++.+
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~  380 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNF-LGSIDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDT  380 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCEECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             ChhHhcCcccCCEEECCCCc-cCCcCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCC
Confidence            4  47789999999999885 555532            145678999999999984 5554 55667789999999998


Q ss_pred             CcccccCCCCCCCCCCCceEEee
Q 044468          347 CAELKKLPLDCNQGLEQKIIIKG  369 (396)
Q Consensus       347 c~~L~~lp~~~~~~~~~l~~~~~  369 (396)
                      + +++.+|.......+.++.+..
T Consensus       381 N-~l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          381 N-QLKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             S-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             C-ccccCCHhHhccCCcccEEEc
Confidence            6 688898877666677777753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=2.9e-27  Score=235.39  Aligned_cols=335  Identities=12%  Similarity=0.136  Sum_probs=237.7

Q ss_pred             CC-ccCCCccccEEEcccccccc------------------ccCC-C--CCCCCcEEEccCCcc-CccChHHHhcCcccc
Q 044468            7 AP-RIGMWKEITRMSLMQNAIQN------------------LTET-P--TCPHLRALFLHSNHL-GTVSNNFFHSMASLR   63 (396)
Q Consensus         7 ~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~   63 (396)
                      +| .++++++|++|++++|.+++                  +|.. .  ++++|++|++++|.+ ..+|.. +.++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCC
Confidence            44 58889999999999999998                  8887 7  899999999999976 467766 89999999


Q ss_pred             EEEeecCCCCc--cccccccCC------CcCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcchhcCCCc
Q 044468           64 VLIFLYNRSLE--NLPLGILNL------VSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKM  133 (396)
Q Consensus        64 ~L~l~~~~~~~--~l~~~l~~l------~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~  133 (396)
                      +|++++|..++  .+|..++++      ++|++|++++|.++.+|.  .+.++++|++|++++|...+.+| . ++.+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence            99999994255  588877776      999999999999999998  89999999999999986665788 4 888999


Q ss_pred             ccEEEeeccCccchhccchhccCCchhhhHhhhcCCC-CcEEEEEecccchhhhhhhc---------------------c
Q 044468          134 LRALRMFECGFKVEQEADRILFGDSEVLVEELLALKH-LNLLTVTLQIFGALQRLLNY---------------------C  191 (396)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---------------------~  191 (396)
                      |++|++++|.+..              ....+..+++ |+.|+++.+....++.....                     .
T Consensus       355 L~~L~L~~N~l~~--------------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          355 LASLNLAYNQITE--------------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             ESEEECCSSEEEE--------------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred             CCEEECCCCcccc--------------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence            9999999987764              3344666666 77777666665443321100                     0


Q ss_pred             CCC-------CCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCc
Q 044468          192 NSS-------RSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS  264 (396)
Q Consensus       192 ~l~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  264 (396)
                      .+.       ++++|+.|+++++.-. ......+..+++|++|+++.+.+..+....... ..+.-..+++|++|++++|
T Consensus       421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          421 NFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE-TTEECTTGGGCCEEECCSS
T ss_pred             hhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc-ccccccccCCccEEECcCC
Confidence            111       3345666666654322 222223445677777777766666443322110 0000012348999999999


Q ss_pred             eeecCCc-cC--CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC------cccccccCCCCC
Q 044468          265 KFRHATW-LV--LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL------QNLKSIHSSYLP  335 (396)
Q Consensus       265 ~l~~l~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~~  335 (396)
                      .++.++. +.  .+++|++|+++++. ++.++.             .+..+++|+.|+++++      .-...++.....
T Consensus       499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          499 KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             CCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccChhhhhccCCCcCEEECCCCC-CCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence            7777765 43  78999999999876 444433             5567899999999653      334566777778


Q ss_pred             CCCcceEEeccCcccccCCCCCCCCCCCceEEeehHHHHHhhc
Q 044468          336 FPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQ  378 (396)
Q Consensus       336 ~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~~~~~~~~~  378 (396)
                      +++|+.|++++|. +..+|....   +.++.+....+.+..++
T Consensus       565 l~~L~~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          565 CPSLTQLQIGSND-IRKVNEKIT---PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CSSCCEEECCSSC-CCBCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred             CCCCCEEECCCCc-CCccCHhHh---CcCCEEECcCCCCcccc
Confidence            9999999999985 689998754   56777766655554443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=5.7e-26  Score=218.91  Aligned_cols=304  Identities=21%  Similarity=0.232  Sum_probs=223.0

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-   78 (396)
                      .+++.+|. .-.+++++|++++|.+..++. . ..+++|++|++++|.+..+.+..+..+++|++|++++| .++.+|. 
T Consensus        21 ~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~   98 (477)
T 2id5_A           21 KRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLG   98 (477)
T ss_dssp             CCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred             CCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcc
Confidence            45666663 223589999999999988644 3 88999999999999888775555889999999999999 7777764 


Q ss_pred             cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .+.++++|++|++++|.+..+ +..+.++++|++|++++|......+.. +..+++|++|++.+|.+...          
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~----------  167 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSI----------  167 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSC----------
T ss_pred             cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCccc----------
Confidence            467899999999999988855 456888999999999998544433434 88899999999999988764          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL  237 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l  237 (396)
                         ....+.++++|+.|++..+.......    ..+.++++|+.|++.++......... .....+|++|+++.+.++.+
T Consensus       168 ---~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          168 ---PTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             ---CHHHHTTCTTCCEEEEESCCCCEECT----TCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSC
T ss_pred             ---ChhHhcccCCCcEEeCCCCcCcEeCh----hhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCccccc
Confidence               45667888999999999887755432    34566777899999886654443322 22334888888887777654


Q ss_pred             eeccccccccccccccccCcEeEEeCceeecCCc--cCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468          238 NIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL  315 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  315 (396)
                      .....        ..+++|++|++++|.++.++.  +..+++|++|+++++. +..+..            ..+..+++|
T Consensus       240 ~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L  298 (477)
T 2id5_A          240 PYLAV--------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP------------YAFRGLNYL  298 (477)
T ss_dssp             CHHHH--------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECT------------TTBTTCTTC
T ss_pred             CHHHh--------cCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECH------------HHhcCcccC
Confidence            43221        167888888888887766543  6778888888888775 454432            144567888


Q ss_pred             ceeeccCCcccccccCC-CCCCCCcceEEeccCc
Q 044468          316 EYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCA  348 (396)
Q Consensus       316 ~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~  348 (396)
                      +.|+++++ .+..++.. ...+++|+.|++.+++
T Consensus       299 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          299 RVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             CEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            88888887 46665543 3457888888887665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.3e-25  Score=222.79  Aligned_cols=143  Identities=22%  Similarity=0.289  Sum_probs=111.2

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PL   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~   78 (396)
                      .+++.+|. .-.+++++|++++|.+..++. . .++++|++|++++|.+..+++..|..+++|++|++++| .+..+ |.
T Consensus        21 ~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~   98 (606)
T 3vq2_A           21 QKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPG   98 (606)
T ss_dssp             SCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTT
T ss_pred             CCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChh
Confidence            45667764 223688899999998888655 3 78889999999988888776655888899999999988 56555 67


Q ss_pred             cccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccch
Q 044468           79 GILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      .++++++|++|++++|.++.++ ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus        99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred             hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence            7888889999999888888666 557888889999988885544 45666 88888888888888876553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=3.6e-26  Score=219.54  Aligned_cols=135  Identities=17%  Similarity=0.345  Sum_probs=86.3

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN   82 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~   82 (396)
                      ++..++.+..+++|++|++++|.+..++....+++|++|++++|.+..+++  +..+++|++|++++| .+..++. +.+
T Consensus        57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~  132 (466)
T 1o6v_A           57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKN  132 (466)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTT
T ss_pred             CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcC
Confidence            455566677777777777777777776555677777777777777766655  677777777777777 5665554 667


Q ss_pred             CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      +++|++|++++|.++.++. +.++++|++|+++++  ...++.  ++.+++|++|++++|.+..
T Consensus       133 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          133 LTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCC
Confidence            7777777777776665542 455555555555321  112221  5556666666666665544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=6.3e-26  Score=212.92  Aligned_cols=287  Identities=17%  Similarity=0.179  Sum_probs=205.7

Q ss_pred             CCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCE
Q 044468           12 MWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQH   88 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~   88 (396)
                      .++++++++++++.+..++..  ..+++|++|++++|.+..++...+..+++|++|++++| .++.++ ..++++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence            357899999999999998875  78999999999999998887755899999999999999 666554 56889999999


Q ss_pred             EEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468           89 LDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA  167 (396)
Q Consensus        89 L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (396)
                      |++++|.++.+|.. +.++++|++|++++|.... ++...++.+++|++|++.+|.++..                .+..
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~  184 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV----------------DLSL  184 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC----------------CGGG
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc----------------cccc
Confidence            99999999998877 4889999999999985544 4443488999999999999988763                2556


Q ss_pred             CCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccc
Q 044468          168 LKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRI  247 (396)
Q Consensus       168 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~  247 (396)
                      +++|+.+++..+....+.         ..++|+.|++.++.-.. ..   ...+++|+.|+++.+.+.+..  ..     
T Consensus       185 l~~L~~L~l~~n~l~~~~---------~~~~L~~L~l~~n~l~~-~~---~~~~~~L~~L~l~~n~l~~~~--~l-----  244 (390)
T 3o6n_A          185 IPSLFHANVSYNLLSTLA---------IPIAVEELDASHNSINV-VR---GPVNVELTILKLQHNNLTDTA--WL-----  244 (390)
T ss_dssp             CTTCSEEECCSSCCSEEE---------CCSSCSEEECCSSCCCE-EE---CCCCSSCCEEECCSSCCCCCG--GG-----
T ss_pred             ccccceeecccccccccC---------CCCcceEEECCCCeeee-cc---ccccccccEEECCCCCCcccH--HH-----
Confidence            677888887776654332         12237777776643222 11   122456777777766665431  11     


Q ss_pred             ccccccccCcEeEEeCceeecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcc
Q 044468          248 RETRGFHSLQKVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQN  325 (396)
Q Consensus       248 ~~~~~~~~L~~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  325 (396)
                         +.+++|++|++++|.++.+  ..++.+++|++|+++++. ++.+..             ....+++|+.|+++++ .
T Consensus       245 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~~l~~L~~L~L~~n-~  306 (390)
T 3o6n_A          245 ---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-------------YGQPIPTLKVLDLSHN-H  306 (390)
T ss_dssp             ---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEEC-------------SSSCCTTCCEEECCSS-C
T ss_pred             ---cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCc-------------ccCCCCCCCEEECCCC-c
Confidence               1567777777777755553  335667777777777664 444432             3345677777777776 4


Q ss_pred             cccccCCCCCCCCcceEEeccCcccccCCC
Q 044468          326 LKSIHSSYLPFPRLKEICVWKCAELKKLPL  355 (396)
Q Consensus       326 l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~  355 (396)
                      +..++.....+++|+.|++.+++ ++.+|.
T Consensus       307 l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~  335 (390)
T 3o6n_A          307 LLHVERNQPQFDRLENLYLDHNS-IVTLKL  335 (390)
T ss_dssp             CCCCGGGHHHHTTCSEEECCSSC-CCCCCC
T ss_pred             ceecCccccccCcCCEEECCCCc-cceeCc
Confidence            55665555566777777777764 666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1.6e-26  Score=234.60  Aligned_cols=334  Identities=13%  Similarity=0.120  Sum_probs=238.5

Q ss_pred             CC-ccCCCccccEEEcccccccc------------------ccCC-C--CCCCCcEEEccCCcc-CccChHHHhcCcccc
Q 044468            7 AP-RIGMWKEITRMSLMQNAIQN------------------LTET-P--TCPHLRALFLHSNHL-GTVSNNFFHSMASLR   63 (396)
Q Consensus         7 ~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~   63 (396)
                      +| .++++++|++|++++|.+..                  +|.. .  .+++|+.|++++|.+ ..+|.. +.++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence            54 58889999999999999998                  8887 6  899999999999976 577766 89999999


Q ss_pred             EEEeecCCCCc--cccccccCCC-------cCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcchhcCCC
Q 044468           64 VLIFLYNRSLE--NLPLGILNLV-------SLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISDLK  132 (396)
Q Consensus        64 ~L~l~~~~~~~--~l~~~l~~l~-------~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~  132 (396)
                      +|++++|..++  .+|..+++++       +|++|++++|.++.+|.  .+.++++|++|++++|.+. .+| . ++.++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCC
Confidence            99999994255  4777666655       99999999999999998  8999999999999998555 788 4 89999


Q ss_pred             cccEEEeeccCccchhccchhccCCchhhhHhhhcCCC-CcEEEEEecccchhhhhhhcc--------------------
Q 044468          133 MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKH-LNLLTVTLQIFGALQRLLNYC--------------------  191 (396)
Q Consensus       133 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~--------------------  191 (396)
                      +|++|++++|.+..              ....+..+++ |+.|++..+....++......                    
T Consensus       596 ~L~~L~Ls~N~l~~--------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          596 KLTDLKLDYNQIEE--------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             EESEEECCSSCCSC--------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             cceEEECcCCcccc--------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence            99999999998774              3345666777 777777777665443211100                    


Q ss_pred             CC----C--CCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCce
Q 044468          192 NS----S--RSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSK  265 (396)
Q Consensus       192 ~l----~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  265 (396)
                      .+    .  .+++|+.|+++++.-. ..+...+..+++|+.|+++.|.+..+...... +..+.-..+++|++|++++|.
T Consensus       662 ~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~-~~~~~l~nl~~L~~L~Ls~N~  739 (876)
T 4ecn_A          662 NISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLK-PKDGNYKNTYLLTTIDLRFNK  739 (876)
T ss_dssp             SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS-CTTSCCTTGGGCCEEECCSSC
T ss_pred             cchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhc-cccccccccCCccEEECCCCC
Confidence            00    0  1224666666554322 22222234567788888877777644332211 000000134589999999998


Q ss_pred             eecCCc-cC--CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc------ccccccCCCCCC
Q 044468          266 FRHATW-LV--LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ------NLKSIHSSYLPF  336 (396)
Q Consensus       266 l~~l~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~  336 (396)
                      ++.++. +.  .+++|+.|+++++. ++.++.             .+..+++|+.|++++++      -...++.....+
T Consensus       740 L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          740 LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT-------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC-------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             CccchHHhhhccCCCcCEEEeCCCC-CCccch-------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence            877765 43  78999999999875 444432             55679999999997743      344566677789


Q ss_pred             CCcceEEeccCcccccCCCCCCCCCCCceEEeehHHHHHhhc
Q 044468          337 PRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQ  378 (396)
Q Consensus       337 ~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~~~~~~~~~  378 (396)
                      ++|+.|++.+|. +..+|....   +.++.+....+.+..++
T Consensus       806 ~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          806 PSLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNISID  843 (876)
T ss_dssp             SSCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTCEEE
T ss_pred             CCCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCCccC
Confidence            999999999985 699998754   46777766555444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.1e-25  Score=216.98  Aligned_cols=142  Identities=23%  Similarity=0.283  Sum_probs=102.7

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~   78 (396)
                      .+++.+|. .-.+++++|++++|.+..++..  ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++ .
T Consensus        17 ~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~   94 (570)
T 2z63_A           17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALG   94 (570)
T ss_dssp             SCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTT
T ss_pred             CCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHh
Confidence            45666664 2235688888888888776543  77888888888888887776655788888888888888 565554 5


Q ss_pred             cccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccc
Q 044468           79 GILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      .++++++|++|++++|.++.++. .++++++|++|++++|.... .+|.. ++++++|++|++.+|.+..
T Consensus        95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred             hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence            67788888888888887776665 47778888888888874443 35665 7778888888888776554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.9e-26  Score=229.54  Aligned_cols=184  Identities=13%  Similarity=0.210  Sum_probs=145.8

Q ss_pred             cccCC-CCCCCCcEEEccCCccCc------------------cChHHHh--cCccccEEEeecCCCCccccccccCCCcC
Q 044468           28 NLTET-PTCPHLRALFLHSNHLGT------------------VSNNFFH--SMASLRVLIFLYNRSLENLPLGILNLVSL   86 (396)
Q Consensus        28 ~l~~~-~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~l~~~l~~l~~L   86 (396)
                      ++|.. .++++|++|++++|.+..                  +|.. +.  ++++|++|++++|...+.+|..++++++|
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            35555 789999999999999876                  8887 77  99999999999996677889999999999


Q ss_pred             CEEEccCCC-CC--ccchhhhcC------CcccEEecccccCCCCCCc--chhcCCCcccEEEeeccCccchhccchhcc
Q 044468           87 QHLDLSWTG-IT--TLPIELKYL------VNLKCLNLEYTFCLSRIPQ--PVISDLKMLRALRMFECGFKVEQEADRILF  155 (396)
Q Consensus        87 ~~L~l~~~~-l~--~l~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~  155 (396)
                      ++|++++|. ++  .+|..++.+      ++|++|++++|... .+|.  . ++.+++|++|++.+|.+.+.        
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g~--------  345 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEGK--------  345 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEEE--------
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCccc--------
Confidence            999999997 88  488888876      99999999998655 8887  5 99999999999999998842        


Q ss_pred             CCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcc-cceEEecccCCCcccchhhhhc--cccccceeeecc
Q 044468          156 GDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSIN-TQSLCLRHLNNSNLLSAFSFAS--LRHLWTLHLYFN  232 (396)
Q Consensus       156 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~  232 (396)
                           .. .+..+++|+.|++..+....++     ..+.++++ |+.|+++++.-. ..+ ..+..  +++|+.|+++.+
T Consensus       346 -----ip-~~~~l~~L~~L~L~~N~l~~lp-----~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          346 -----LP-AFGSEIKLASLNLAYNQITEIP-----ANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             -----CC-CCEEEEEESEEECCSSEEEECC-----TTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSS
T ss_pred             -----hh-hhCCCCCCCEEECCCCcccccc-----HhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCC
Confidence                 33 7888899999999988876443     33566777 888888876533 221 12222  347777777766


Q ss_pred             ccc
Q 044468          233 DFE  235 (396)
Q Consensus       233 ~i~  235 (396)
                      .+.
T Consensus       413 ~l~  415 (636)
T 4eco_A          413 EIG  415 (636)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=9e-26  Score=221.35  Aligned_cols=180  Identities=22%  Similarity=0.247  Sum_probs=128.9

Q ss_pred             CCCCCCCccCCCccccEEEcccccccccc-CC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-   78 (396)
                      .+++.+|. .-.+++++|++++|.+..++ .. ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++. 
T Consensus        15 ~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~   92 (549)
T 2z81_A           15 RSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSS   92 (549)
T ss_dssp             SCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHH
T ss_pred             Cccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHH
Confidence            35666664 22368999999999988854 33 88999999999999888777655889999999999999 6666654 


Q ss_pred             cccCCCcCCEEEccCCCCCc--cchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccc-----
Q 044468           79 GILNLVSLQHLDLSWTGITT--LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEAD-----  151 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~-----  151 (396)
                      .++++++|++|++++|.++.  .|..+.++++|++|++++|.....++...+..+++|++|++.+|.+.+.....     
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  172 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR  172 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence            48889999999999998874  45678889999999999886567776544888999999999988876531000     


Q ss_pred             -----hhccCCchhh-hHhhhcCCCCcEEEEEecccch
Q 044468          152 -----RILFGDSEVL-VEELLALKHLNLLTVTLQIFGA  183 (396)
Q Consensus       152 -----~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  183 (396)
                           .+........ ...+..+++|+.|++..+....
T Consensus       173 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence                 0001111111 1123457788888887766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=1.3e-25  Score=222.75  Aligned_cols=334  Identities=18%  Similarity=0.168  Sum_probs=204.3

Q ss_pred             ccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCc
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVS   85 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~   85 (396)
                      .|.++++|++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++ ..++++++
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLIT  129 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTT
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCC
Confidence            47788888888888888888643 3 78888888888888887764444888888888888888 565554 56788888


Q ss_pred             CCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcC---------------------------CCcccE
Q 044468           86 LQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISD---------------------------LKMLRA  136 (396)
Q Consensus        86 L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~---------------------------l~~L~~  136 (396)
                      |++|++++|.+.  .+|..++++++|++|++++|......+.. ++.                           ..+|++
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~  208 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE  208 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence            888888888776  46778888888888888877433221111 111                           113444


Q ss_pred             EEeeccCcc-----------------------------------------------------------------------
Q 044468          137 LRMFECGFK-----------------------------------------------------------------------  145 (396)
Q Consensus       137 L~l~~~~~~-----------------------------------------------------------------------  145 (396)
                      |++.+|.+.                                                                       
T Consensus       209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~  288 (606)
T 3vq2_A          209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS  288 (606)
T ss_dssp             EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred             eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence            444444321                                                                       


Q ss_pred             --------------------------------chhcc-------chhccCCchhhhHhhhcCCCCcEEEEEecccchhh-
Q 044468          146 --------------------------------VEQEA-------DRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQ-  185 (396)
Q Consensus       146 --------------------------------~~~~~-------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-  185 (396)
                                                      ..+..       ..+..... .....+..+++|+.|+++.+...... 
T Consensus       289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~  367 (606)
T 3vq2_A          289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGC  367 (606)
T ss_dssp             EEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSS-CEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred             EEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcC-ccchhhccCCCCCEEECcCCccCCCcc
Confidence                                            00000       00000000 00113445566666666655543221 


Q ss_pred             ---hhhhc-----------------cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccc
Q 044468          186 ---RLLNY-----------------CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK  245 (396)
Q Consensus       186 ---~~~~~-----------------~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~  245 (396)
                         .+...                 ..+.++++|+.|++.++.-........+..+++|+.|+++.+.+........   
T Consensus       368 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---  444 (606)
T 3vq2_A          368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF---  444 (606)
T ss_dssp             CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT---
T ss_pred             hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh---
Confidence               00000                 2234445566666655432222111235556666666666555543222111   


Q ss_pred             ccccccccccCcEeEEeCceeec--CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccC
Q 044468          246 RIRETRGFHSLQKVYINYSKFRH--AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEG  322 (396)
Q Consensus       246 ~~~~~~~~~~L~~L~l~~~~l~~--l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  322 (396)
                           +.+++|++|++.+|.+++  ++ .++.+++|++|++++|. ++.+..            ..+..+++|+.|++++
T Consensus       445 -----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          445 -----LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW------------GVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             -----TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCS
T ss_pred             -----cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccCh------------hhhcccccCCEEECCC
Confidence                 267888888888886665  33 46778888888888875 444432            1456789999999999


Q ss_pred             Ccccccc-cCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEe
Q 044468          323 LQNLKSI-HSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIK  368 (396)
Q Consensus       323 ~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~  368 (396)
                      |. +..+ +.....+++|+.|++++|. ++.+|.........++.+.
T Consensus       507 N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          507 NN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             SC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEE
T ss_pred             Cc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEE
Confidence            85 5444 5667778999999999984 8899987444333466665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=7.9e-25  Score=217.22  Aligned_cols=143  Identities=20%  Similarity=0.155  Sum_probs=110.4

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-ccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPL   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~   78 (396)
                      .+++.+|. .--+.+++|++++|.++.++. . ..+++|++|++++|.+..+.+..|..+++|++|++++| .+.. .|.
T Consensus        22 ~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~   99 (606)
T 3t6q_A           22 LGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAET   99 (606)
T ss_dssp             SCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTT
T ss_pred             CCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChh
Confidence            45666663 113478999999999988643 4 88999999999999887775555889999999999999 5554 467


Q ss_pred             cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468           79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      .++++++|++|++++|.++.+ +..+.++++|++|++++|......... +..+++|++|++.+|.+...
T Consensus       100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A          100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEE
T ss_pred             hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCccccc
Confidence            788999999999999988876 456888999999999998544422122 45588999999999887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=6.9e-25  Score=210.64  Aligned_cols=306  Identities=18%  Similarity=0.213  Sum_probs=176.7

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN   82 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~   82 (396)
                      .+.+++.+..+++|++|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++| .+..++. ++.
T Consensus        79 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~  154 (466)
T 1o6v_A           79 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISA-LSG  154 (466)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCGG-GTT
T ss_pred             ccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCChh-hcc
Confidence            345555578888999999999988886656788899999999988877765  788888999998888 5555543 555


Q ss_pred             CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch--------hc
Q 044468           83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR--------IL  154 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~--------~~  154 (396)
                      +++|++|++++ .+..++. +.++++|++|++++|. ...++.  +..+++|++|++.+|.+........        +.
T Consensus       155 l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  229 (466)
T 1o6v_A          155 LTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLN  229 (466)
T ss_dssp             CTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             CCcccEeecCC-cccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCcccccccccccCCCCEEECC
Confidence            55555555542 2222222 4445555555555542 222221  4445555555555544433200000        00


Q ss_pred             cCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccc
Q 044468          155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF  234 (396)
Q Consensus       155 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  234 (396)
                      .... ..+..+..+++|+.|++..+.......      +.++++|+.|+++++.-....   .+..+++|+.|+++.+.+
T Consensus       230 ~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l  299 (466)
T 1o6v_A          230 GNQL-KDIGTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQL  299 (466)
T ss_dssp             SSCC-CCCGGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCC
T ss_pred             CCCc-ccchhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCccc---cccCCCccCeEEcCCCcc
Confidence            0000 001234455556656555555443322      334445666666554322111   145566666666665555


Q ss_pred             ceeeeccccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccC
Q 044468          235 EELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGR  314 (396)
Q Consensus       235 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  314 (396)
                      +++..         - +.+++|++|++++|.++++++++.+++|++|++++|. ++.+ .             .+..+++
T Consensus       300 ~~~~~---------~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-~-------------~l~~l~~  354 (466)
T 1o6v_A          300 EDISP---------I-SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDV-S-------------SLANLTN  354 (466)
T ss_dssp             SCCGG---------G-GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCC-G-------------GGTTCTT
T ss_pred             cCchh---------h-cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCc-h-------------hhccCCC
Confidence            43221         1 1567777777777766666666677777777777764 3333 1             4456788


Q ss_pred             cceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCC
Q 044468          315 LEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL  355 (396)
Q Consensus       315 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~  355 (396)
                      |+.|++++|. +..+.. ...+++|+.|++.+|+ ++.+|.
T Consensus       355 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~  392 (466)
T 1o6v_A          355 INWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA-WTNAPV  392 (466)
T ss_dssp             CCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred             CCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence            8888888774 444333 5567888888888764 555444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=3.7e-25  Score=213.27  Aligned_cols=308  Identities=19%  Similarity=0.152  Sum_probs=242.2

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~   94 (396)
                      -+.++.++++++.+|.. -.++++.|++++|.+..+++..+..+++|++|++++| .+..+ |..+.++++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence            36788888888888764 2368999999999998886666999999999999999 66655 678999999999999999


Q ss_pred             CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      .++.+|.. +.++++|++|++++|......+.. +..+++|++|++.+|.+...             ....+.++++|+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~  156 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYI-------------SHRAFSGLNSLEQ  156 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEE-------------CTTSSTTCTTCCE
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCcccee-------------ChhhccCCCCCCE
Confidence            99988865 689999999999998554444444 89999999999999988764             4567888999999


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc-ccceeeeccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN-DFEELNIDAGEVKRIRETRG  252 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~l~~~~~~~~~~~~~~~  252 (396)
                      |++..+.....+.    ..+.++++|+.|++.++.. .......+..+++|+.|+++.+ .+..+.....         .
T Consensus       157 L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~  222 (477)
T 2id5_A          157 LTLEKCNLTSIPT----EALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL---------Y  222 (477)
T ss_dssp             EEEESCCCSSCCH----HHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTT---------T
T ss_pred             EECCCCcCcccCh----hHhcccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcccc---------c
Confidence            9999988765443    1245667799999988643 3333345778899999999944 4443332221         4


Q ss_pred             cccCcEeEEeCceeecCC--ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc-
Q 044468          253 FHSLQKVYINYSKFRHAT--WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI-  329 (396)
Q Consensus       253 ~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-  329 (396)
                      ..+|++|++++|.++.++  .+..+++|++|+++++. ++.+..            ..+..+++|+.|+++++. +..+ 
T Consensus       223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n~-l~~~~  288 (477)
T 2id5_A          223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------------SMLHELLRLQEIQLVGGQ-LAVVE  288 (477)
T ss_dssp             TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT------------TSCTTCTTCCEEECCSSC-CSEEC
T ss_pred             CccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh------------hhccccccCCEEECCCCc-cceEC
Confidence            459999999999888887  47889999999999886 555533            145678999999999984 5554 


Q ss_pred             cCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEe
Q 044468          330 HSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIK  368 (396)
Q Consensus       330 ~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~  368 (396)
                      +.....+++|+.|++.++ +++.+|.......+.++.+.
T Consensus       289 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  326 (477)
T 2id5_A          289 PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLI  326 (477)
T ss_dssp             TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEE
T ss_pred             HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEE
Confidence            445667899999999998 69999987766656677664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=5.6e-25  Score=214.29  Aligned_cols=134  Identities=23%  Similarity=0.292  Sum_probs=109.8

Q ss_pred             CCCCCCCc-cCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc
Q 044468            2 AGLTGAPR-IGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL   78 (396)
Q Consensus         2 ~~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~   78 (396)
                      -+++.+|. +.  +++++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|.
T Consensus        10 n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~   86 (520)
T 2z7x_B           10 NGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISC   86 (520)
T ss_dssp             SCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC
T ss_pred             CCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCc
Confidence            35666764 33  789999999999988653 3 88999999999999998775555899999999999999 7788887


Q ss_pred             cccCCCcCCEEEccCCCCCc--cchhhhcCCcccEEecccccCCCCCCcchhcCCCcc--cEEEeeccCc
Q 044468           79 GILNLVSLQHLDLSWTGITT--LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML--RALRMFECGF  144 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L--~~L~l~~~~~  144 (396)
                      .  .+++|++|++++|.++.  +|..++++++|++|++++|....   . .+..+++|  ++|++.+|.+
T Consensus        87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~-~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---S-SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---G-GGGGGTTSCEEEEEEEECTT
T ss_pred             c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---h-hccccccceeeEEEeecccc
Confidence            6  79999999999999885  57889999999999999985433   2 26677777  9999988876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=1.2e-25  Score=223.05  Aligned_cols=274  Identities=18%  Similarity=0.157  Sum_probs=145.8

Q ss_pred             HhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcc
Q 044468           56 FHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML  134 (396)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L  134 (396)
                      +..+++|++|++++| .++.+|..+.++++|++|++++|.++.+ |..+.++++|++|++++|.....++...++.+++|
T Consensus       274 ~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            445555555555555 4555555555555566666655555543 33455555566666555544444444335555666


Q ss_pred             cEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccc
Q 044468          135 RALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLS  214 (396)
Q Consensus       135 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  214 (396)
                      ++|++++|.+...           ......+..+++|+.|++..+.......    ..+.++++|+.|+++++.-.....
T Consensus       353 ~~L~l~~n~l~~~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          353 RELDLSHDDIETS-----------DCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CEEECCSSCCCEE-----------EESTTTTTTCTTCCEEECCSCSCEEECT----TTTTTCTTCSEEECTTCCEECCTT
T ss_pred             CEEECCCCccccc-----------cCcchhcccCCCCCEEECCCCcCCcCCH----HHhcCCccCCeEECCCCcCCCccc
Confidence            6666665555442           0113345556666666666555432211    234445556666666543222211


Q ss_pred             hhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec--C---CccCCCCCccEEeecccccc
Q 044468          215 AFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH--A---TWLVLAPRAKVIRISNCQRL  289 (396)
Q Consensus       215 ~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--l---~~l~~l~~L~~L~l~~~~~l  289 (396)
                      ...+..+++|+.|+++.+.+........        +.+++|++|++++|.+++  +   ..++.+++|++|++++|. +
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l  488 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLF--------DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-L  488 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTT--------TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-C
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHH--------hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-c
Confidence            1224556666666666555543222111        156777777777775544  1   235567777777777664 4


Q ss_pred             ceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEe
Q 044468          290 QEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIK  368 (396)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~  368 (396)
                      +.+..            ..+..+++|+.|+++++.--...+.....+++| .|++.++ +++.+|+......+.++.+.
T Consensus       489 ~~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~  553 (606)
T 3t6q_A          489 SSIDQ------------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTIN  553 (606)
T ss_dssp             CEECT------------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEE
T ss_pred             CccCh------------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEe
Confidence            44422            134567777777777774333334445556777 7777776 46666654433334445543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.5e-25  Score=219.09  Aligned_cols=290  Identities=16%  Similarity=0.207  Sum_probs=196.3

Q ss_pred             CccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEE
Q 044468           13 WKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHL   89 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L   89 (396)
                      +++++.+++.++.+..+|..  ..+++|++|++++|.+..+++..+..+++|++|++++| .+..+| ..++++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence            56889999999999888775  67899999999999998877655899999999999999 666555 457899999999


Q ss_pred             EccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcC
Q 044468           90 DLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL  168 (396)
Q Consensus        90 ~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  168 (396)
                      ++++|.++.+|.. +.++++|++|++++|.+....|.. ++.+++|++|++++|.+...                .+..+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~----------------~~~~l  191 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV----------------DLSLI  191 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBC----------------CGGGC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCc----------------Chhhh
Confidence            9999999988876 488999999999998555444444 88999999999999988763                13344


Q ss_pred             CCCcEEEEEecccchhhhhhhcc------------CCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccce
Q 044468          169 KHLNLLTVTLQIFGALQRLLNYC------------NSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEE  236 (396)
Q Consensus       169 ~~L~~L~l~~~~~~~~~~~~~~~------------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~  236 (396)
                      +.|+.|++..+....+.......            .....++|+.|+++++.-...   ..+..+++|+.|+++.+.+..
T Consensus       192 ~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          192 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCE
T ss_pred             hhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCC
Confidence            55555555544432211100000            000113466666666432221   235667777777777666665


Q ss_pred             eeeccccccccccccccccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468          237 LNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL  315 (396)
Q Consensus       237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  315 (396)
                      +.....        +.+++|++|++++|.++.++. .+.+++|++|++++|. +..++.             .+..+++|
T Consensus       269 ~~~~~~--------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~-------------~~~~l~~L  326 (597)
T 3oja_B          269 IMYHPF--------VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVER-------------NQPQFDRL  326 (597)
T ss_dssp             EESGGG--------TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGG-------------GHHHHTTC
T ss_pred             CCHHHh--------cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCc-------------ccccCCCC
Confidence            433222        156777777777776666544 3347777777777765 444432             34567777


Q ss_pred             ceeeccCCcccccccCCCCCCCCcceEEeccCc
Q 044468          316 EYLILEGLQNLKSIHSSYLPFPRLKEICVWKCA  348 (396)
Q Consensus       316 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~  348 (396)
                      ++|++++|. +..++  ...+++|+.|++.+++
T Consensus       327 ~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          327 ENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             CEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence            777777763 44443  4456777777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=1.1e-24  Score=214.23  Aligned_cols=134  Identities=26%  Similarity=0.328  Sum_probs=98.4

Q ss_pred             CCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI   80 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l   80 (396)
                      +++.+|. .-.+++++|++++|.+..++. . ..+++|++|++++|.+..++++.+..+++|++|++++| .++.+|.. 
T Consensus        42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-  118 (562)
T 3a79_B           42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-  118 (562)
T ss_dssp             CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-
T ss_pred             CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-
Confidence            4556653 113678888888888888653 3 78888888888888887775555788888888888888 67777765 


Q ss_pred             cCCCcCCEEEccCCCCCccc--hhhhcCCcccEEecccccCCCCCCcchhcCCCcc--cEEEeeccCc
Q 044468           81 LNLVSLQHLDLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML--RALRMFECGF  144 (396)
Q Consensus        81 ~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L--~~L~l~~~~~  144 (396)
                       .+++|++|++++|.++.++  ..++++++|++|++++|.... ..   +..+++|  ++|++.+|.+
T Consensus       119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred             -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence             7888888888888887654  678888888888888874433 22   4444444  8888887766

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=3.4e-25  Score=217.29  Aligned_cols=132  Identities=19%  Similarity=0.268  Sum_probs=107.1

Q ss_pred             ccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc--cccccccCCC
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE--NLPLGILNLV   84 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~l~~l~   84 (396)
                      .|..+++|++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .+.  ..|..+++++
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT  123 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence            58889999999999999999654 4 88999999999999998888777899999999999999 666  3466788999


Q ss_pred             cCCEEEccCCC-CCccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468           85 SLQHLDLSWTG-ITTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC  142 (396)
Q Consensus        85 ~L~~L~l~~~~-l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~  142 (396)
                      +|++|++++|. ++.+| ..+.++++|++|++++|......|.. ++.+++|++|++..+
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS  182 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence            99999999996 66776 46888999999999988655545554 555555555554444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=5.3e-25  Score=210.22  Aligned_cols=227  Identities=17%  Similarity=0.133  Sum_probs=157.7

Q ss_pred             CccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCC
Q 044468            8 PRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ   87 (396)
Q Consensus         8 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~   87 (396)
                      ..++++++|++|++++|.+.+++....+++|++|++++|.+..++   +..+++|++|++++| .++.++  ++++++|+
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~  109 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT  109 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred             cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence            456678888888888888888765578888888888888887764   678888888888888 666664  77888888


Q ss_pred             EEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468           88 HLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA  167 (396)
Q Consensus        88 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (396)
                      +|++++|.++.++  +.++++|++|++++|... .++   ++.+++|++|++.+|...+.             .  .+..
T Consensus       110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~-------------~--~~~~  168 (457)
T 3bz5_A          110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITK-------------L--DVTP  168 (457)
T ss_dssp             EEECCSSCCSCCC--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCC-------------C--CCTT
T ss_pred             EEECCCCcCCeec--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCcccc-------------c--cccc
Confidence            8888888888775  778888888888887433 343   67788888888888754431             1  3566


Q ss_pred             CCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccc
Q 044468          168 LKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRI  247 (396)
Q Consensus       168 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~  247 (396)
                      +++|+.|++..+....++       +.++++|+.|+++++.- ....   +..+++|+.|+++.+.++.+.+        
T Consensus       169 l~~L~~L~ls~n~l~~l~-------l~~l~~L~~L~l~~N~l-~~~~---l~~l~~L~~L~Ls~N~l~~ip~--------  229 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITELD-------VSQNKLLNRLNCDTNNI-TKLD---LNQNIQLTFLDCSSNKLTEIDV--------  229 (457)
T ss_dssp             CTTCCEEECCSSCCCCCC-------CTTCTTCCEEECCSSCC-SCCC---CTTCTTCSEEECCSSCCSCCCC--------
T ss_pred             CCcCCEEECCCCccceec-------cccCCCCCEEECcCCcC-Ceec---cccCCCCCEEECcCCcccccCc--------
Confidence            777777777777665532       44556677777766432 2222   5566777777777766665331        


Q ss_pred             ccccccccCcEeEEeCceeecCCccCCCCCccEEeec
Q 044468          248 RETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRIS  284 (396)
Q Consensus       248 ~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~  284 (396)
                         +.+++|++|++++|.++.++ .+.+++|+.|+++
T Consensus       230 ---~~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~  262 (457)
T 3bz5_A          230 ---TPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCI  262 (457)
T ss_dssp             ---TTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECT
T ss_pred             ---cccCCCCEEEeeCCcCCCcC-HHHCCCCCEEecc
Confidence               15667777777777666554 3445555544443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=218.75  Aligned_cols=346  Identities=17%  Similarity=0.129  Sum_probs=221.2

Q ss_pred             ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCc
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVS   85 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~   85 (396)
                      .|..+++|++|++++|.+..++..  ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++. .++++++
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence            678899999999999999987543  78999999999999998887666899999999999999 7776664 6889999


Q ss_pred             CCEEEccCCCCCc--cchhhhcCCcccEEecccccCCCCCCcchhcCCCcc----cEEEeeccCccchhccch-------
Q 044468           86 LQHLDLSWTGITT--LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML----RALRMFECGFKVEQEADR-------  152 (396)
Q Consensus        86 L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L----~~L~l~~~~~~~~~~~~~-------  152 (396)
                      |++|++++|.++.  +|..+.++++|++|++++|... .++...++.+++|    +.+++.+|.+........       
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~  204 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK  204 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence            9999999998874  7888999999999999998443 3332225555555    566666655443211000       


Q ss_pred             --hcc-----------------------------------------------------------CCchhhhHhhhcCCCC
Q 044468          153 --ILF-----------------------------------------------------------GDSEVLVEELLALKHL  171 (396)
Q Consensus       153 --~~~-----------------------------------------------------------~~~~~~~~~l~~l~~L  171 (396)
                        +..                                                           .........+..+++|
T Consensus       205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L  284 (570)
T 2z63_A          205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV  284 (570)
T ss_dssp             EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred             EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence              000                                                           0001112334455666


Q ss_pred             cEEEEEecccchhhhhhh---------------------cc----------------CCCCCcccceEEecccCCCcccc
Q 044468          172 NLLTVTLQIFGALQRLLN---------------------YC----------------NSSRSINTQSLCLRHLNNSNLLS  214 (396)
Q Consensus       172 ~~L~l~~~~~~~~~~~~~---------------------~~----------------~l~~~~~L~~L~l~~~~~~~~~~  214 (396)
                      +.|++..+....++....                     ..                ....+++|+.|+++++.-.....
T Consensus       285 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  364 (570)
T 2z63_A          285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC  364 (570)
T ss_dssp             SEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred             cEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence            666666555433321110                     00                01356778888887754322110


Q ss_pred             -hhhhhccccccceeeeccccceeeeccccc--------------ccccc-c-cccccCcEeEEeCceeecC--CccCCC
Q 044468          215 -AFSFASLRHLWTLHLYFNDFEELNIDAGEV--------------KRIRE-T-RGFHSLQKVYINYSKFRHA--TWLVLA  275 (396)
Q Consensus       215 -~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~--------------~~~~~-~-~~~~~L~~L~l~~~~l~~l--~~l~~l  275 (396)
                       ...+..+++|++|+++.+.+..+......-              +..+. . ..+++|++|++++|.++..  ..+..+
T Consensus       365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  444 (570)
T 2z63_A          365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  444 (570)
T ss_dssp             EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence             234677889999999877766554321100              00110 0 2344555555555533332  123445


Q ss_pred             CCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc-cCCCCCCCCcceEEeccCcccccCC
Q 044468          276 PRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI-HSSYLPFPRLKEICVWKCAELKKLP  354 (396)
Q Consensus       276 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~lp  354 (396)
                      ++|++|++++|.....            .....+..+++|+.|++++|. +..+ +.....+++|+.|++.+| +++.+|
T Consensus       445 ~~L~~L~l~~n~l~~~------------~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  510 (570)
T 2z63_A          445 SSLEVLKMAGNSFQEN------------FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVP  510 (570)
T ss_dssp             TTCCEEECTTCEEGGG------------EECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             CcCcEEECcCCcCccc------------cchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence            5555555555542111            122356778999999999984 5554 556677899999999998 688888


Q ss_pred             CCCCCCCCCceEEeeh
Q 044468          355 LDCNQGLEQKIIIKGQ  370 (396)
Q Consensus       355 ~~~~~~~~~l~~~~~~  370 (396)
                      .......+.++.+...
T Consensus       511 ~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          511 DGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             TTTTTTCTTCCEEECC
T ss_pred             HHHhhcccCCcEEEec
Confidence            8766666777777633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=6.5e-25  Score=222.93  Aligned_cols=278  Identities=10%  Similarity=0.137  Sum_probs=180.1

Q ss_pred             ccCC-CCCCCCcEEEccCCccCc------------------cChHHHh--cCccccEEEeecCCCCccccccccCCCcCC
Q 044468           29 LTET-PTCPHLRALFLHSNHLGT------------------VSNNFFH--SMASLRVLIFLYNRSLENLPLGILNLVSLQ   87 (396)
Q Consensus        29 l~~~-~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~   87 (396)
                      +|.. .++++|+.|++++|.+..                  +|.. +.  .+++|++|++++|...+.+|..++++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            5555 778899999999998876                  7777 55  899999999999866778888899999999


Q ss_pred             EEEccCCC-CCc--cchhhhcCC-------cccEEecccccCCCCCCc--chhcCCCcccEEEeeccCccchhccchhcc
Q 044468           88 HLDLSWTG-ITT--LPIELKYLV-------NLKCLNLEYTFCLSRIPQ--PVISDLKMLRALRMFECGFKVEQEADRILF  155 (396)
Q Consensus        88 ~L~l~~~~-l~~--l~~~l~~l~-------~L~~L~l~~~~~~~~~~~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~  155 (396)
                      +|++++|. ++.  +|..+.+++       +|++|++++|.+. .+|.  . ++.+++|++|++++|.+...        
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N~l~~l--------  588 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHNKVRHL--------  588 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTSCCCBC--------
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCCCcccc--------
Confidence            99999997 774  887776665       9999999998555 7887  5 88999999999999987742        


Q ss_pred             CCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcc-cceEEecccCCCcccchhhhhcc--ccccceeeecc
Q 044468          156 GDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSIN-TQSLCLRHLNNSNLLSAFSFASL--RHLWTLHLYFN  232 (396)
Q Consensus       156 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~  232 (396)
                            . .+..+++|+.|++..+....++     ..+.++++ |+.|+++++.-. ..+ ..+..+  ++|+.|+++.|
T Consensus       589 ------p-~~~~L~~L~~L~Ls~N~l~~lp-----~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          589 ------E-AFGTNVKLTDLKLDYNQIEEIP-----EDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             ------C-CCCTTSEESEEECCSSCCSCCC-----TTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSS
T ss_pred             ------h-hhcCCCcceEEECcCCccccch-----HHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCC
Confidence                  2 7788889999999888876443     23566777 888888876432 221 112222  34777777755


Q ss_pred             ccceee-------------------eccccccccccc--cccccCcEeEEeCceeecCCc-cC--------CCCCccEEe
Q 044468          233 DFEELN-------------------IDAGEVKRIRET--RGFHSLQKVYINYSKFRHATW-LV--------LAPRAKVIR  282 (396)
Q Consensus       233 ~i~~l~-------------------~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~l~~-l~--------~l~~L~~L~  282 (396)
                      .+....                   +....-..+|..  ..+++|+.|++++|.++.++. ..        .+++|++|+
T Consensus       655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~  734 (876)
T 4ecn_A          655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID  734 (876)
T ss_dssp             CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred             cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence            553210                   000000112211  134555555555554444432 11        122555666


Q ss_pred             eccccccceeecccccccchhccccccc--cccCcceeeccCCcccccccCCCCCCCCcceEEecc
Q 044468          283 ISNCQRLQEIISMEKLGEISAEVMDNLI--LFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWK  346 (396)
Q Consensus       283 l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~  346 (396)
                      +++|. ++.+..             .+.  .+++|+.|+++++ .+..++.....+++|+.|++.+
T Consensus       735 Ls~N~-L~~lp~-------------~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          735 LRFNK-LTSLSD-------------DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             CCSSC-CCCCCG-------------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCC
T ss_pred             CCCCC-CccchH-------------HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCC
Confidence            55553 333322             222  5666677776666 3555555555666777776655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=9.1e-25  Score=222.17  Aligned_cols=155  Identities=21%  Similarity=0.283  Sum_probs=92.4

Q ss_pred             CCCccccEEEcccccccc-ccCCCCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468           11 GMWKEITRMSLMQNAIQN-LTETPTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus        11 ~~~~~L~~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      ..+++|++|++++|.+.. ++....+++|++|++++|.+. .++.. +..+++|++|++++|...+.+|..  .+++|++
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~  273 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQY  273 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence            456666777777666665 333366777777777777665 33333 677777777777777322233322  5566666


Q ss_pred             EEccCCCCC-ccchhhhcC-CcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh
Q 044468           89 LDLSWTGIT-TLPIELKYL-VNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL  166 (396)
Q Consensus        89 L~l~~~~l~-~l~~~l~~l-~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (396)
                      |++++|.++ .+|..+... ++|++|++++|...+.+|.. ++.+++|++|++.+|.+.+.            .....+.
T Consensus       274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~------------ip~~~l~  340 (768)
T 3rgz_A          274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE------------LPMDTLL  340 (768)
T ss_dssp             EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE------------CCHHHHT
T ss_pred             EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc------------CCHHHHh
Confidence            666666555 556555543 77777777777555566655 67777777777777766532            1122245


Q ss_pred             cCCCCcEEEEEeccc
Q 044468          167 ALKHLNLLTVTLQIF  181 (396)
Q Consensus       167 ~l~~L~~L~l~~~~~  181 (396)
                      ++++|+.|++..+..
T Consensus       341 ~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEF  355 (768)
T ss_dssp             TCTTCCEEECCSSEE
T ss_pred             cCCCCCEEeCcCCcc
Confidence            555555555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=1.1e-24  Score=221.62  Aligned_cols=92  Identities=13%  Similarity=0.023  Sum_probs=56.6

Q ss_pred             ccccCcEeEEeCceeec-CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc
Q 044468          252 GFHSLQKVYINYSKFRH-AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI  329 (396)
Q Consensus       252 ~~~~L~~L~l~~~~l~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  329 (396)
                      .+++|+.|++++|.++. +| .++.+++|+.|+++++.....++.             .+..+++|+.|+++++.--..+
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-------------~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-------------EVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-------------GGGGCTTCCEEECCSSCCEECC
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-------------HHhCCCCCCEEECCCCcccCcC
Confidence            34566677777765554 33 256677777777776653223322             5566777777777777544466


Q ss_pred             cCCCCCCCCcceEEeccCcccccCCCC
Q 044468          330 HSSYLPFPRLKEICVWKCAELKKLPLD  356 (396)
Q Consensus       330 ~~~~~~~~~L~~L~i~~c~~L~~lp~~  356 (396)
                      |.....+++|+.|++++++--..+|..
T Consensus       697 p~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          697 PQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             ChHHhCCCCCCEEECcCCcccccCCCc
Confidence            666667777777777776544456653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=1.5e-24  Score=203.61  Aligned_cols=270  Identities=16%  Similarity=0.167  Sum_probs=222.8

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccch-hhhcCCccc
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLK  110 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~  110 (396)
                      ..+++++.|+++++.+..+|..++..+++|++|++++| .+..++ ..+.++++|++|++++|.++.++. .+.++++|+
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            45789999999999999999988899999999999999 677665 478999999999999999997754 478999999


Q ss_pred             EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhc
Q 044468          111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY  190 (396)
Q Consensus       111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  190 (396)
                      +|++++| ....+|..+++.+++|++|++.+|.+...             ....+..+++|+.|++..+.....+     
T Consensus       121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~-----  181 (390)
T 3o6n_A          121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI-------------EDDTFQATTSLQNLQLSSNRLTHVD-----  181 (390)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC-------------CTTTTSSCTTCCEEECCSSCCSBCC-----
T ss_pred             EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCcc-------------ChhhccCCCCCCEEECCCCcCCccc-----
Confidence            9999998 55677877678999999999999988764             4556888999999999988876542     


Q ss_pred             cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC
Q 044468          191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT  270 (396)
Q Consensus       191 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  270 (396)
                        +..+++|+.|++.++.- .     .+...++|++|+++.+.+..+...           .+++|++|++.+|.+++.+
T Consensus       182 --~~~l~~L~~L~l~~n~l-~-----~~~~~~~L~~L~l~~n~l~~~~~~-----------~~~~L~~L~l~~n~l~~~~  242 (390)
T 3o6n_A          182 --LSLIPSLFHANVSYNLL-S-----TLAIPIAVEELDASHNSINVVRGP-----------VNVELTILKLQHNNLTDTA  242 (390)
T ss_dssp             --GGGCTTCSEEECCSSCC-S-----EEECCSSCSEEECCSSCCCEEECC-----------CCSSCCEEECCSSCCCCCG
T ss_pred             --cccccccceeecccccc-c-----ccCCCCcceEEECCCCeeeecccc-----------ccccccEEECCCCCCcccH
Confidence              33456699999987532 2     134457899999998888765421           5689999999999999888


Q ss_pred             ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCccc
Q 044468          271 WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAEL  350 (396)
Q Consensus       271 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L  350 (396)
                      +++.+++|++|+++++. ++.+..            ..+..+++|+.|+++++ .+..++.....+++|+.|++.+| ++
T Consensus       243 ~l~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l  307 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNE-LEKIMY------------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HL  307 (390)
T ss_dssp             GGGGCTTCSEEECCSSC-CCEEES------------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CC
T ss_pred             HHcCCCCccEEECCCCc-CCCcCh------------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cc
Confidence            89999999999999986 555432            14567899999999998 57788777778999999999998 58


Q ss_pred             ccCCCC
Q 044468          351 KKLPLD  356 (396)
Q Consensus       351 ~~lp~~  356 (396)
                      +.+|..
T Consensus       308 ~~~~~~  313 (390)
T 3o6n_A          308 LHVERN  313 (390)
T ss_dssp             CCCGGG
T ss_pred             eecCcc
Confidence            888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=1.8e-24  Score=198.54  Aligned_cols=294  Identities=13%  Similarity=0.124  Sum_probs=213.7

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW   93 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~   93 (396)
                      .++.++++++.+..+|.. -.++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..++++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence            689999999999888764 2478999999999998886655899999999999999 66655 67889999999999999


Q ss_pred             CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      |.++.+|..+.  ++|++|++++| ....++...+..+++|++|++.+|.+...           ......+..+ +|+.
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL-KLNY  176 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-CCSC
T ss_pred             CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-ccCE
Confidence            99998887655  89999999998 45566665588999999999999988642           1234455555 7888


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      |+++.+....++..     +.  ++|+.|+++++.- .......+..+++|++|+++.+.+..+.....        +.+
T Consensus       177 L~l~~n~l~~l~~~-----~~--~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~l  240 (332)
T 2ft3_A          177 LRISEAKLTGIPKD-----LP--ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SFL  240 (332)
T ss_dssp             CBCCSSBCSSCCSS-----SC--SSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GGC
T ss_pred             EECcCCCCCccCcc-----cc--CCCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hCC
Confidence            88888877654421     11  4588888887533 33333347778899999999888776543222        268


Q ss_pred             ccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccc--cccc
Q 044468          254 HSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNL--KSIH  330 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~  330 (396)
                      ++|++|++++|.++.++. ++.+++|++|+++++. ++.+....|.+..      ....+++|+.|++.+++..  ...+
T Consensus       241 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~------~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG------FGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS------CCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             CCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccc------cccccccccceEeecCcccccccCc
Confidence            899999999998888765 7778999999998875 6666443332210      1123678888999888632  1222


Q ss_pred             CCCCCCCCcceEEeccCc
Q 044468          331 SSYLPFPRLKEICVWKCA  348 (396)
Q Consensus       331 ~~~~~~~~L~~L~i~~c~  348 (396)
                      .....+++|+.+++.++.
T Consensus       314 ~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGTTBCCSTTEEC----
T ss_pred             ccccccchhhhhhccccc
Confidence            334457788888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=7.5e-24  Score=194.21  Aligned_cols=293  Identities=15%  Similarity=0.157  Sum_probs=218.7

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW   93 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~   93 (396)
                      +++.++++++.+..+|.. -.++++.|++++|.+..++...+..+++|++|++++| .++.+ |..++++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence            789999999999888764 2368999999999998888766899999999999999 66655 77899999999999999


Q ss_pred             CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      |.++.+|..+.  ++|++|++++| ....++...+..+++|++|++.+|.+...           ......+.++++|+.
T Consensus       110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~~L~~  175 (330)
T 1xku_A          110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMKKLSY  175 (330)
T ss_dssp             SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCTTCCE
T ss_pred             CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc-----------CcChhhccCCCCcCE
Confidence            99998887654  79999999998 45556665589999999999999987642           124567788999999


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      |++..+....++..     +  .++|+.|+++++. ........+..+++|++|+++.+.++.+......        .+
T Consensus       176 L~l~~n~l~~l~~~-----~--~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l  239 (330)
T 1xku_A          176 IRIADTNITTIPQG-----L--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NT  239 (330)
T ss_dssp             EECCSSCCCSCCSS-----C--CTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--------GS
T ss_pred             EECCCCccccCCcc-----c--cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--------CC
Confidence            99998887654421     1  1459999998764 3333334577889999999998888765542221        68


Q ss_pred             ccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc---
Q 044468          254 HSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI---  329 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---  329 (396)
                      ++|++|++++|.++.++. +..+++|++|+++++. ++.+....|.+..      .....+.|+.|++.+++ +..+   
T Consensus       240 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~------~~~~~~~l~~l~l~~N~-~~~~~i~  311 (330)
T 1xku_A          240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG------YNTKKASYSGVSLFSNP-VQYWEIQ  311 (330)
T ss_dssp             TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS------CCTTSCCCSEEECCSSS-SCGGGSC
T ss_pred             CCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcc------cccccccccceEeecCc-ccccccC
Confidence            899999999998887754 7778999999999876 6666554433211      12346788888888876 3222   


Q ss_pred             cCCCCCCCCcceEEeccC
Q 044468          330 HSSYLPFPRLKEICVWKC  347 (396)
Q Consensus       330 ~~~~~~~~~L~~L~i~~c  347 (396)
                      +.....+++++.+++.++
T Consensus       312 ~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          312 PSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGGTTCCCGGGEEC---
T ss_pred             ccccccccceeEEEeccc
Confidence            223344667777777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=5.3e-24  Score=203.89  Aligned_cols=312  Identities=16%  Similarity=0.160  Sum_probs=222.8

Q ss_pred             CccCCCccccEEEcccccccc-ccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-cccc--cc
Q 044468            8 PRIGMWKEITRMSLMQNAIQN-LTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPLG--IL   81 (396)
Q Consensus         8 ~~~~~~~~L~~L~l~~~~~~~-l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~--l~   81 (396)
                      ..|+.+++|++|++++|.+.. ++. . ..+++|++|++++|.+..+.+..+..+++|++|++++| .+.. .+..  +.
T Consensus        48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~  126 (455)
T 3v47_A           48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFK  126 (455)
T ss_dssp             TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTT
T ss_pred             hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCccccc
Confidence            358889999999999998874 543 3 88999999999999998765444899999999999999 5553 4443  88


Q ss_pred             CCCcCCEEEccCCCCCcc-chh-hhcCCcccEEecccccCCCCCCcchhcC-----------------------------
Q 044468           82 NLVSLQHLDLSWTGITTL-PIE-LKYLVNLKCLNLEYTFCLSRIPQPVISD-----------------------------  130 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~-----------------------------  130 (396)
                      ++++|++|++++|.++.+ |.. +.++++|++|++++|......+.. +..                             
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~  205 (455)
T 3v47_A          127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC  205 (455)
T ss_dssp             TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred             CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhcccccc
Confidence            899999999999999866 544 789999999999998655544433 433                             


Q ss_pred             -----CCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhh----hhhc--cCCC--CCc
Q 044468          131 -----LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQR----LLNY--CNSS--RSI  197 (396)
Q Consensus       131 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~--~~l~--~~~  197 (396)
                           +++|++|++++|.+...          ....+.......+|+.+++..+.......    +...  ..+.  ..+
T Consensus       206 ~~~~~~~~L~~L~Ls~n~l~~~----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
T 3v47_A          206 GNPFKNTSITTLDLSGNGFKES----------MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS  275 (455)
T ss_dssp             CCTTTTCEEEEEECTTSCCCHH----------HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred             ccccccceeeeEecCCCccccc----------chhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence                 35677777777766542          11122222334778888876553221100    0000  0011  125


Q ss_pred             ccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCC
Q 044468          198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLA  275 (396)
Q Consensus       198 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l  275 (396)
                      +|+.|+++++.- .......+..+++|++|+++.+.+..+......        .+++|++|++++|.++.++  .++.+
T Consensus       276 ~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          276 GVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--------GLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             CCCEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             CceEEEecCccc-cccchhhcccCCCCCEEECCCCcccccChhHhc--------CcccCCEEECCCCccCCcChhHhcCc
Confidence            699999988643 333334478889999999998888866543322        6899999999999777764  47789


Q ss_pred             CCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCC-CCCCCCcceEEeccCcccccCC
Q 044468          276 PRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCAELKKLP  354 (396)
Q Consensus       276 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~lp  354 (396)
                      ++|++|+++++. ++.+..            ..+..+++|++|+++++ .+..++.. ...+++|+.|++.+++--...|
T Consensus       347 ~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          347 DKLEVLDLSYNH-IRALGD------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCEEECCCCc-ccccCh------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999986 555532            14567999999999998 57777664 3678999999999886433344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=2e-23  Score=214.37  Aligned_cols=143  Identities=23%  Similarity=0.287  Sum_probs=119.4

Q ss_pred             CCCCCCCccCCCccccEEEcccccccccc-CC-CCCCCCcEEEccCCc-cCccChHHHhcCccccEEEeecCCCCccc-c
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNH-LGTVSNNFFHSMASLRVLIFLYNRSLENL-P   77 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~   77 (396)
                      .+++.+|.  ..+++++|++++|.+..+. .. ..+++|++|++++|. +..+++..+.++++|++|++++| .+..+ |
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p   90 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHP   90 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCH
Confidence            56788887  5689999999999999854 44 899999999999994 46775555999999999999999 56544 7


Q ss_pred             ccccCCCcCCEEEccCCCCCc-cchh--hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468           78 LGILNLVSLQHLDLSWTGITT-LPIE--LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        78 ~~l~~l~~L~~L~l~~~~l~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      ..++++++|++|++++|.++. +|..  +.++++|++|++++|......+...++++++|++|++++|.+...
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            889999999999999999884 5554  889999999999999665544433489999999999999988663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=2.1e-23  Score=209.77  Aligned_cols=260  Identities=19%  Similarity=0.181  Sum_probs=174.3

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-   78 (396)
                      .+++.+|.- -.+++++|++++|.+..++..  ..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|. 
T Consensus        14 ~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~   91 (680)
T 1ziw_A           14 LKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDK   91 (680)
T ss_dssp             SCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChh
Confidence            456677642 136899999999999987653  78999999999999998776666899999999999999 7777775 


Q ss_pred             cccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           79 GILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .++++++|++|++++|.++.++ ..+.++++|++|++++|......+.. ++.+++|++|++.+|.+...          
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~----------  160 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQAL----------  160 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCB----------
T ss_pred             hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCccccc----------
Confidence            5889999999999999998776 46889999999999998655554544 88999999999999987764          


Q ss_pred             chhhhHhh--hcCCCCcEEEEEecccchhhhh--hhccCCC---------------------CCcccceEEecccCCCcc
Q 044468          158 SEVLVEEL--LALKHLNLLTVTLQIFGALQRL--LNYCNSS---------------------RSINTQSLCLRHLNNSNL  212 (396)
Q Consensus       158 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~---------------------~~~~L~~L~l~~~~~~~~  212 (396)
                         ....+  ..+++|+.|++..+........  .....+.                     ..++|+.|++.++.- ..
T Consensus       161 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l-~~  236 (680)
T 1ziw_A          161 ---KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-ST  236 (680)
T ss_dssp             ---CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC-CE
T ss_pred             ---CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc-cc
Confidence               22222  2345667676665544322110  0000000                     113456666655432 11


Q ss_pred             cchhhhhccc--cccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCCCCccEEeeccc
Q 044468          213 LSAFSFASLR--HLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLAPRAKVIRISNC  286 (396)
Q Consensus       213 ~~~~~l~~~~--~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l~~~  286 (396)
                      .....+..++  +|++|+++.+.++.+.....        +.+++|++|++.+|.++.+.  .++++++|++|+++++
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSCCCEECTTTT--------TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             cChhHhhccCcCCCCEEECCCCCcCccCcccc--------cCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            1112244443  37777777666654432222        15667777777776555432  3555666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=8.1e-24  Score=202.05  Aligned_cols=292  Identities=16%  Similarity=0.144  Sum_probs=223.6

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN   82 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~   82 (396)
                      ++.++|.++.+++|++|++++|.+..++ ...+++|++|++++|.+..++   +..+++|++|++++| .++.+|  +++
T Consensus        53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~~  125 (457)
T 3bz5_A           53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VSQ  125 (457)
T ss_dssp             CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CTT
T ss_pred             CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CCC
Confidence            4566788999999999999999999875 578999999999999998874   789999999999999 777775  889


Q ss_pred             CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468           83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV  162 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  162 (396)
                      +++|++|++++|.++.++  ++++++|++|++++|...+.++   ++.+++|++|++++|.++..               
T Consensus       126 l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l---------------  185 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL---------------  185 (457)
T ss_dssp             CTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC---------------
T ss_pred             CCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee---------------
Confidence            999999999999999875  7899999999999997676663   78899999999999988763               


Q ss_pred             HhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccc
Q 044468          163 EELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAG  242 (396)
Q Consensus       163 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~  242 (396)
                       .+..++.|+.|++..+.....       .+.++++|+.|+++++.- ...+   +..+++|+.|+++.+.++.+...  
T Consensus       186 -~l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l-~~ip---~~~l~~L~~L~l~~N~l~~~~~~--  251 (457)
T 3bz5_A          186 -DVSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKL-TEID---VTPLTQLTYFDCSVNPLTELDVS--  251 (457)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSSCCSCCCCT--
T ss_pred             -ccccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcc-cccC---ccccCCCCEEEeeCCcCCCcCHH--
Confidence             167888999999998887654       256778899999988643 3333   67789999999998888765421  


Q ss_pred             cccccccccccccCcEeEEeCceeecCC----------ccCCCCCccEEeeccccccceeecccccccchhccccccccc
Q 044468          243 EVKRIRETRGFHSLQKVYINYSKFRHAT----------WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF  312 (396)
Q Consensus       243 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~----------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  312 (396)
                               .+++|+.|++.++.++.+.          +.+.+++|+.|++++|..+..+.... ..    -..-.+..+
T Consensus       252 ---------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~-~~----L~~L~l~~~  317 (457)
T 3bz5_A          252 ---------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA-AG----ITELDLSQN  317 (457)
T ss_dssp             ---------TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT-CC----CSCCCCTTC
T ss_pred             ---------HCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC-Cc----ceEechhhc
Confidence                     4566665555544443321          24568999999999998776664311 00    000124566


Q ss_pred             cCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccC
Q 044468          313 GRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKL  353 (396)
Q Consensus       313 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l  353 (396)
                      ++|+.|+++++ .++.++  ...+++|+.|++.+. +++.+
T Consensus       318 ~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l  354 (457)
T 3bz5_A          318 PKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA-HIQDF  354 (457)
T ss_dssp             TTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred             ccCCEEECCCC-cccccc--cccCCcCcEEECCCC-CCCCc
Confidence            78888888776 465553  567889999988764 34443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=5.4e-23  Score=202.10  Aligned_cols=130  Identities=18%  Similarity=0.190  Sum_probs=109.5

Q ss_pred             CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEE
Q 044468           12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLD   90 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~   90 (396)
                      .+...+++++++++++.+|..- .++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..+.++++|++|+
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEE
Confidence            3555689999999999988752 389999999999999888666999999999999999 66665 67789999999999


Q ss_pred             ccCCCCCccchhhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccc
Q 044468           91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      +++|.++.+|..  .+++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus       107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred             CCCCcCCccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCcccc
Confidence            999999999877  89999999999985444 23455 9999999999999998765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.3e-23  Score=207.70  Aligned_cols=290  Identities=15%  Similarity=0.119  Sum_probs=203.6

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccchh-hhcCCccc
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLK  110 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~  110 (396)
                      -.+.+++.++++++.+..+|..++..+++|++|++++| .+..++ ..++++++|++|++++|.++.+|.. ++++++|+
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            35689999999999999999988899999999999999 676665 5889999999999999999977654 68999999


Q ss_pred             EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhc
Q 044468          111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY  190 (396)
Q Consensus       111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  190 (396)
                      +|++++| .+..+|..+++.+++|++|++++|.+...             ....+.++++|+.|++.++.....+     
T Consensus       127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~-----  187 (597)
T 3oja_B          127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI-------------EDDTFQATTSLQNLQLSSNRLTHVD-----  187 (597)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC-------------CTTTTTTCTTCCEEECTTSCCSBCC-----
T ss_pred             EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCC-------------ChhhhhcCCcCcEEECcCCCCCCcC-----
Confidence            9999998 55577777679999999999999998874             4557888999999999988775542     


Q ss_pred             cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccc-----------cccccccccccccCcEe
Q 044468          191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAG-----------EVKRIRETRGFHSLQKV  259 (396)
Q Consensus       191 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~-----------~~~~~~~~~~~~~L~~L  259 (396)
                        +..+++|+.|++.++.- ..     +...++|+.|+++.+.+..+.....           .-...+.-+.+++|++|
T Consensus       188 --~~~l~~L~~L~l~~n~l-~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L  259 (597)
T 3oja_B          188 --LSLIPSLFHANVSYNLL-ST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV  259 (597)
T ss_dssp             --GGGCTTCSEEECCSSCC-SE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             --hhhhhhhhhhhcccCcc-cc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEE
Confidence              22344466666665321 11     2223345555555444433221100           00000101256777777


Q ss_pred             EEeCceeecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCC
Q 044468          260 YINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFP  337 (396)
Q Consensus       260 ~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  337 (396)
                      ++++|.++.+  ..++.+++|++|+++++. +..+..             ....+++|+.|++++| .+..++.....++
T Consensus       260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-------------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~  324 (597)
T 3oja_B          260 DLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFD  324 (597)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC-------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred             ECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc-------------ccccCCCCcEEECCCC-CCCccCcccccCC
Confidence            7777765554  246667777777777764 444432             3456788888888887 4666766666788


Q ss_pred             CcceEEeccCcccccCCCCCCCCCCCceEEee
Q 044468          338 RLKEICVWKCAELKKLPLDCNQGLEQKIIIKG  369 (396)
Q Consensus       338 ~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~  369 (396)
                      +|+.|++.+|. +..+|...   .+.++.+..
T Consensus       325 ~L~~L~L~~N~-l~~~~~~~---~~~L~~L~l  352 (597)
T 3oja_B          325 RLENLYLDHNS-IVTLKLST---HHTLKNLTL  352 (597)
T ss_dssp             TCSEEECCSSC-CCCCCCCT---TCCCSEEEC
T ss_pred             CCCEEECCCCC-CCCcChhh---cCCCCEEEe
Confidence            88888888874 77776433   345555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.1e-22  Score=198.11  Aligned_cols=144  Identities=19%  Similarity=0.221  Sum_probs=120.8

Q ss_pred             cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCC
Q 044468           17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTG   95 (396)
Q Consensus        17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~   95 (396)
                      +++++++++++.+|..-. ++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..++++++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence            679999999999887522 89999999999998888666999999999999999 66655 6789999999999999999


Q ss_pred             CCccchhhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC--c
Q 044468           96 ITTLPIELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL--N  172 (396)
Q Consensus        96 l~~l~~~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~  172 (396)
                      ++.+|..  .+++|++|++++|.... .+|.. ++.+++|++|++++|.+...                .+..+++|  +
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~----------------~~~~l~~L~L~  141 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKS----------------SVLPIAHLNIS  141 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCGG----------------GGGGGTTSCEE
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccchh----------------hccccccceee
Confidence            9999877  89999999999996555 35666 99999999999999987652                33444555  7


Q ss_pred             EEEEEeccc
Q 044468          173 LLTVTLQIF  181 (396)
Q Consensus       173 ~L~l~~~~~  181 (396)
                      .|++..+..
T Consensus       142 ~L~l~~n~l  150 (520)
T 2z7x_B          142 KVLLVLGET  150 (520)
T ss_dssp             EEEEEECTT
T ss_pred             EEEeecccc
Confidence            777777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=1.5e-22  Score=203.60  Aligned_cols=359  Identities=19%  Similarity=0.146  Sum_probs=210.4

Q ss_pred             CCCCC--ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468            4 LTGAP--RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L   78 (396)
Q Consensus         4 l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~   78 (396)
                      +..++  .|.++++|++|++++|.+..++..  ..+++|++|++++|.+..++...+..+++|++|++++| .+..++ .
T Consensus        37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~  115 (680)
T 1ziw_A           37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNN  115 (680)
T ss_dssp             CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSC
T ss_pred             CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChh
Confidence            44454  488899999999999999886444  78999999999999998888766899999999999999 666665 5


Q ss_pred             cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhc--CCCcccEEEeeccCccchhccch---
Q 044468           79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVIS--DLKMLRALRMFECGFKVEQEADR---  152 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~--~l~~L~~L~l~~~~~~~~~~~~~---  152 (396)
                      .++++++|++|++++|.++.. |..+.++++|++|++++|.. ..++...+.  .+++|++|++.+|.+........   
T Consensus       116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  194 (680)
T 1ziw_A          116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI  194 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred             HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence            788999999999999988854 45578899999999999844 444433243  56889999999987765411000   


Q ss_pred             -------hccC-CchhhhHhh---hcCCCCcEEEEEecccchhhhhhhccCCCCCc--ccceEEecccCCCcccchhhhh
Q 044468          153 -------ILFG-DSEVLVEEL---LALKHLNLLTVTLQIFGALQRLLNYCNSSRSI--NTQSLCLRHLNNSNLLSAFSFA  219 (396)
Q Consensus       153 -------~~~~-~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~l~  219 (396)
                             +... ........+   -..+.|+.|++..+.......    ..+.+++  +|+.|+++++.- .......+.
T Consensus       195 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~----~~~~~l~~~~L~~L~Ls~n~l-~~~~~~~~~  269 (680)
T 1ziw_A          195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN----TTFLGLKWTNLTMLDLSYNNL-NVVGNDSFA  269 (680)
T ss_dssp             SEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT----TTTGGGGGSCCCEEECTTSCC-CEECTTTTT
T ss_pred             hhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh----hHhhccCcCCCCEEECCCCCc-CccCccccc
Confidence                   0000 000000000   012445555554443322110    1122222  255666655432 222112344


Q ss_pred             ccccccceeeeccccceeeeccccc--------------------ccccc----c-cccccCcEeEEeCceeecCCc--c
Q 044468          220 SLRHLWTLHLYFNDFEELNIDAGEV--------------------KRIRE----T-RGFHSLQKVYINYSKFRHATW--L  272 (396)
Q Consensus       220 ~~~~L~~L~l~~~~i~~l~~~~~~~--------------------~~~~~----~-~~~~~L~~L~l~~~~l~~l~~--l  272 (396)
                      .+++|++|+++.+.+..+.......                    ..+|.    . ..+++|++|++.+|.++.++.  +
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (680)
T 1ziw_A          270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF  349 (680)
T ss_dssp             TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred             CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence            5555555555544444332111000                    01111    1 257888888888887776543  6


Q ss_pred             CCCCCccEEeeccccc-cceeecccccc-------------c-chhccccccccccCcceeeccCCccccccc-CCCCCC
Q 044468          273 VLAPRAKVIRISNCQR-LQEIISMEKLG-------------E-ISAEVMDNLILFGRLEYLILEGLQNLKSIH-SSYLPF  336 (396)
Q Consensus       273 ~~l~~L~~L~l~~~~~-l~~~~~~~~~~-------------~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~  336 (396)
                      ..+++|++|+++++.. +..+....|..             . ...-....+..+++|+.|+++++.-...++ .....+
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l  429 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL  429 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred             ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence            6788888888887641 12221111100             0 000011234556777777777764322333 234456


Q ss_pred             CCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468          337 PRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ  370 (396)
Q Consensus       337 ~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~  370 (396)
                      ++|+.|++.+|. +..++.......+.++.+...
T Consensus       430 ~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          430 ENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             TTCCEEECCSCS-EEECCTTTTTTCTTCCEEECT
T ss_pred             ccccEEecCCCC-cceeChhhhhcCcccccchhc
Confidence            777777777764 666666555555666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.90  E-value=2.6e-22  Score=199.93  Aligned_cols=142  Identities=24%  Similarity=0.286  Sum_probs=120.1

Q ss_pred             CCCCCCCccCCC-ccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc
Q 044468            2 AGLTGAPRIGMW-KEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL   78 (396)
Q Consensus         2 ~~l~~~~~~~~~-~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~   78 (396)
                      .+++.+|.  .+ +++++|++++|.++.++..  .++++|++|++++|.+..+++++|..+++|++|++++| .++.+|.
T Consensus        41 ~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~  117 (635)
T 4g8a_A           41 LNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL  117 (635)
T ss_dssp             SCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred             CCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence            56777773  23 4799999999999998754  88999999999999999998877999999999999999 7887774


Q ss_pred             -cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccch
Q 044468           79 -GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        79 -~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                       .+.++++|++|++++|.++.++.. ++++++|++|++++|.... ..|.. ++.+++|++|++.+|.+...
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccc
Confidence             578999999999999999988764 8899999999999985543 24454 88899999999999877554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=1.7e-22  Score=207.44  Aligned_cols=306  Identities=20%  Similarity=0.221  Sum_probs=211.6

Q ss_pred             CccCCCccccEEEccccccc-cc-cCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc-ccccc--cc
Q 044468            8 PRIGMWKEITRMSLMQNAIQ-NL-TET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE-NLPLG--IL   81 (396)
Q Consensus         8 ~~~~~~~~L~~L~l~~~~~~-~l-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~--l~   81 (396)
                      ..|.++++|++|++++|... .+ +.. .++++|++|++++|.+..+.+..+..+++|++|++++| .+. .+|..  ++
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~  120 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFR  120 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCS
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCcccc
Confidence            36888999999999999544 46 444 89999999999999998775555999999999999999 554 35544  88


Q ss_pred             CCCcCCEEEccCCCCCcc--chhhhcCCcccEEecccccCCCCCCcchhcCC--CcccEEEeeccCccchhccchhccCC
Q 044468           82 NLVSLQHLDLSWTGITTL--PIELKYLVNLKCLNLEYTFCLSRIPQPVISDL--KMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      ++++|++|++++|.++.+  +..++++++|++|++++|......+.. +..+  ++|+.|++..|.+...          
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~----------  189 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSR----------  189 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCC----------
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCccccc----------
Confidence            999999999999998855  356899999999999998655555554 6666  7899999988877652          


Q ss_pred             chhhhHhhhcCC------CCcEEEEEecccch--hhhhhh------------------------------ccCCCC--Cc
Q 044468          158 SEVLVEELLALK------HLNLLTVTLQIFGA--LQRLLN------------------------------YCNSSR--SI  197 (396)
Q Consensus       158 ~~~~~~~l~~l~------~L~~L~l~~~~~~~--~~~~~~------------------------------~~~l~~--~~  197 (396)
                         ....+..+.      .|+.|+++++....  ...+..                              ...+.+  .+
T Consensus       190 ---~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          190 ---VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             ---CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             ---cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence               111122221      36666666553211  000000                              011111  25


Q ss_pred             ccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCC
Q 044468          198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLA  275 (396)
Q Consensus       198 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l  275 (396)
                      +|+.|+++++.- .......+..+++|+.|+++.+.+..+.....        ..+++|++|++++|.++.+.  .+..+
T Consensus       267 ~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (844)
T 3j0a_A          267 SVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAF--------YGLDNLQVLNLSYNLLGELYSSNFYGL  337 (844)
T ss_dssp             CCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTT--------TTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred             CccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHh--------cCCCCCCEEECCCCCCCccCHHHhcCC
Confidence            688888876542 22222346778888888888888776543322        26788999999888777653  46778


Q ss_pred             CCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCC
Q 044468          276 PRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL  355 (396)
Q Consensus       276 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~  355 (396)
                      ++|++|+++++. +..+..            ..+..+++|+.|+++++ .+..++    .+++|+.|.+.++ +++.+|.
T Consensus       338 ~~L~~L~L~~N~-i~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N-~l~~l~~  398 (844)
T 3j0a_A          338 PKVAYIDLQKNH-IAIIQD------------QTFKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGN-KLVTLPK  398 (844)
T ss_dssp             TTCCEEECCSCC-CCCCCS------------SCSCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESC-CCCCCCC
T ss_pred             CCCCEEECCCCC-CCccCh------------hhhcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCC-Ccccccc
Confidence            889999988874 444432            13456888899988887 355443    2778888888876 4667765


Q ss_pred             C
Q 044468          356 D  356 (396)
Q Consensus       356 ~  356 (396)
                      .
T Consensus       399 ~  399 (844)
T 3j0a_A          399 I  399 (844)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=6.6e-23  Score=189.67  Aligned_cols=275  Identities=17%  Similarity=0.157  Sum_probs=191.1

Q ss_pred             CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEE
Q 044468           12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLD   90 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~   90 (396)
                      .|+.....+.+++.++.+|.. -.++|+.|++++|.+..++...+..+++|++|++++| .++.+ +..+.++++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEE
Confidence            355555677888888887764 2358888899888888777755888888999999888 66655 45678888899999


Q ss_pred             ccCCCCCccchh-hhcCCcccEEecccccCCCCCCc-chhcCCCcccEEEeeccC-ccchhccchhccCCchhhhHhhhc
Q 044468           91 LSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQ-PVISDLKMLRALRMFECG-FKVEQEADRILFGDSEVLVEELLA  167 (396)
Q Consensus        91 l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  167 (396)
                      +++|.++.++.. +.++++|++|++++| ....++. ..+..+++|++|++.+|. +...             ....+.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-------------~~~~~~~  172 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI-------------QRKDFAG  172 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-------------CTTTTTT
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc-------------CHHHccC
Confidence            988888887766 778888999999887 4445665 447788889999888884 4432             3456777


Q ss_pred             CCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccc
Q 044468          168 LKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRI  247 (396)
Q Consensus       168 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~  247 (396)
                      +++|+.|++..+......    ...+.++++|+.|+++++.. .......+..+++|+.|+++.+.++.......     
T Consensus       173 l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----  242 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYE----PKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-----  242 (353)
T ss_dssp             CCEEEEEEEEETTCCEEC----TTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------
T ss_pred             CCCCCEEECCCCCcCccC----HHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccccc-----
Confidence            888888888887765431    13456677788888887543 33222234557889999998877775543211     


Q ss_pred             ccccccccCcEeEEeCceeec-----CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeecc
Q 044468          248 RETRGFHSLQKVYINYSKFRH-----AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILE  321 (396)
Q Consensus       248 ~~~~~~~~L~~L~l~~~~l~~-----l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  321 (396)
                      +.......++.+++.++.+++     ++ .+..+++|++|+++++. ++.+.. .           ....+++|++|+++
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~-~-----------~~~~l~~L~~L~L~  309 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD-G-----------IFDRLTSLQKIWLH  309 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT-T-----------TTTTCTTCCEEECC
T ss_pred             ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH-H-----------HHhcCCCCCEEEee
Confidence            111145667777777775544     22 35678888888888875 555533 0           23568888888888


Q ss_pred             CCcc
Q 044468          322 GLQN  325 (396)
Q Consensus       322 ~~~~  325 (396)
                      +++-
T Consensus       310 ~N~~  313 (353)
T 2z80_A          310 TNPW  313 (353)
T ss_dssp             SSCB
T ss_pred             CCCc
Confidence            8753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=6.2e-23  Score=186.52  Aligned_cols=250  Identities=14%  Similarity=0.088  Sum_probs=134.6

Q ss_pred             CCCcEEEccCCccC---ccChHHHhcCccccEEEeec-CCCCccccccccCCCcCCEEEccCCCCC-ccchhhhcCCccc
Q 044468           36 PHLRALFLHSNHLG---TVSNNFFHSMASLRVLIFLY-NRSLENLPLGILNLVSLQHLDLSWTGIT-TLPIELKYLVNLK  110 (396)
Q Consensus        36 ~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~~~~~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~  110 (396)
                      .+++.|+++++.+.   .+|.. +..+++|++|++++ +...+.+|..++++++|++|++++|.++ .+|..+.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            34555555555443   24443 45555555555552 3222244444555555555555555554 4444455555555


Q ss_pred             EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCC-CCcEEEEEecccc-hhhhhh
Q 044468          111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALK-HLNLLTVTLQIFG-ALQRLL  188 (396)
Q Consensus       111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~~  188 (396)
                      +|++++|.+...+|.. ++.+++|++|++.+|.+.+.             ....+..++ .|+.|++..+... ..+.  
T Consensus       129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~--  192 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA-------------IPDSYGSFSKLFTSMTISRNRLTGKIPP--  192 (313)
T ss_dssp             EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE-------------CCGGGGCCCTTCCEEECCSSEEEEECCG--
T ss_pred             EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc-------------CCHHHhhhhhcCcEEECcCCeeeccCCh--
Confidence            5555555444344443 45555555555555554431             333444444 5555555544433 1111  


Q ss_pred             hccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec
Q 044468          189 NYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH  268 (396)
Q Consensus       189 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  268 (396)
                         .+.+++ |+.|+++++.- .......+..+++|+.|+++.+.+....         |....+++|++|++++|.++.
T Consensus       193 ---~~~~l~-L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          193 ---TFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDL---------GKVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             ---GGGGCC-CSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBG---------GGCCCCTTCCEEECCSSCCEE
T ss_pred             ---HHhCCc-ccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeec---------CcccccCCCCEEECcCCcccC
Confidence               111222 55566655321 1122233566778888888866665221         111267888999998887764


Q ss_pred             -CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccccccc
Q 044468          269 -AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIH  330 (396)
Q Consensus       269 -l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  330 (396)
                       ++ .+..+++|++|+++++. ++..+.             ....+++|+.+++.+++.+...+
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~-l~~~ip-------------~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNN-LCGEIP-------------QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSE-EEEECC-------------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             cCChHHhcCcCCCEEECcCCc-ccccCC-------------CCccccccChHHhcCCCCccCCC
Confidence             33 37778899999998886 332222             22578899999999888776543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.1e-21  Score=179.80  Aligned_cols=275  Identities=17%  Similarity=0.149  Sum_probs=205.3

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI   80 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l   80 (396)
                      ++..+|. .-.++++.|++++|.+..++..  ..+++|++|++++|.+..+.+..+..+++|++|++++| .++.+|..+
T Consensus        42 ~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~  119 (330)
T 1xku_A           42 GLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM  119 (330)
T ss_dssp             CCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred             CccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh
Confidence            4555553 1236899999999999997663  88999999999999998775444899999999999999 788888765


Q ss_pred             cCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCC--CCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           81 LNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLS--RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        81 ~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .  ++|++|++++|.++.++. .+.++++|++|++++|....  ..+.. +..+++|++|++.+|.+...          
T Consensus       120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l----------  186 (330)
T 1xku_A          120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI----------  186 (330)
T ss_dssp             C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC----------
T ss_pred             c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccC----------
Confidence            4  899999999999997765 47899999999999985532  23334 88999999999999988763          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL  237 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l  237 (396)
                          ...+  .++|+.|++..+.......    ..+.++++|+.|+++++.- .......+..+++|++|+++.+.+..+
T Consensus       187 ----~~~~--~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l  255 (330)
T 1xku_A          187 ----PQGL--PPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVKV  255 (330)
T ss_dssp             ----CSSC--CTTCSEEECTTSCCCEECT----GGGTTCTTCCEEECCSSCC-CEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred             ----Cccc--cccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcC-ceeChhhccCCCCCCEEECCCCcCccC
Confidence                1111  2789999998887654421    2355677799999988643 333333578889999999998888754


Q ss_pred             eeccccccccccccccccCcEeEEeCceeecCCc--cC------CCCCccEEeeccccccceeecccccccchhcccccc
Q 044468          238 NIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LV------LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL  309 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  309 (396)
                      ....         ..+++|++|++.+|.++.++.  +.      ..+.|+.|++.+++. ..+..          .....
T Consensus       256 p~~l---------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~-~~~~i----------~~~~f  315 (330)
T 1xku_A          256 PGGL---------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV-QYWEI----------QPSTF  315 (330)
T ss_dssp             CTTT---------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS-CGGGS----------CGGGG
T ss_pred             Chhh---------ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc-ccccc----------Ccccc
Confidence            4322         278999999999998887653  21      258899999998873 32211          01245


Q ss_pred             ccccCcceeeccCC
Q 044468          310 ILFGRLEYLILEGL  323 (396)
Q Consensus       310 ~~~~~L~~L~l~~~  323 (396)
                      ..+++|+.++++++
T Consensus       316 ~~~~~l~~l~L~~N  329 (330)
T 1xku_A          316 RCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTCCCGGGEEC---
T ss_pred             ccccceeEEEeccc
Confidence            66888999998775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=5e-22  Score=182.18  Aligned_cols=275  Identities=20%  Similarity=0.212  Sum_probs=205.1

Q ss_pred             CCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI   80 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l   80 (396)
                      ++..+|. .-.+++++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|..+
T Consensus        44 ~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~  121 (332)
T 2ft3_A           44 GLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL  121 (332)
T ss_dssp             CCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC
T ss_pred             CccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccc
Confidence            4555653 224689999999999999754 3 89999999999999998875555899999999999999 788888766


Q ss_pred             cCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCC--CCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           81 LNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLS--RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        81 ~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~--~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .  ++|++|++++|.++.++.. +.++++|++|++++|....  ..+.. +..+ +|++|++.+|.+...          
T Consensus       122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~l~~l----------  187 (332)
T 2ft3_A          122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAKLTGI----------  187 (332)
T ss_dssp             C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSBCSSC----------
T ss_pred             c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCCCCcc----------
Confidence            5  8999999999999988764 7899999999999985532  33333 6677 999999999988763          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL  237 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l  237 (396)
                          ...+  .++|+.|+++.+.......    ..+.++++|+.|+++++.- .......+..+++|++|+++.+.++.+
T Consensus       188 ----~~~~--~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l  256 (332)
T 2ft3_A          188 ----PKDL--PETLNELHLDHNKIQAIEL----EDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSRV  256 (332)
T ss_dssp             ----CSSS--CSSCSCCBCCSSCCCCCCT----TSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred             ----Cccc--cCCCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCCcCeec
Confidence                1111  1678888888887755431    3466778899999988643 333333578899999999998888755


Q ss_pred             eeccccccccccccccccCcEeEEeCceeecCCc--cC------CCCCccEEeeccccccceeecccccccchhcccccc
Q 044468          238 NIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LV------LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL  309 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  309 (396)
                      ....         +.+++|++|++++|.++.++.  +.      ..++|+.|++.+++. ..+..          .....
T Consensus       257 p~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~-~~~~~----------~~~~~  316 (332)
T 2ft3_A          257 PAGL---------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV-PYWEV----------QPATF  316 (332)
T ss_dssp             CTTG---------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS-CGGGS----------CGGGG
T ss_pred             Chhh---------hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc-ccccc----------Ccccc
Confidence            4322         278999999999998887643  22      257899999999873 31110          01245


Q ss_pred             ccccCcceeeccCCc
Q 044468          310 ILFGRLEYLILEGLQ  324 (396)
Q Consensus       310 ~~~~~L~~L~l~~~~  324 (396)
                      ..+++|+.++++++.
T Consensus       317 ~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          317 RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTBCCSTTEEC----
T ss_pred             cccchhhhhhccccc
Confidence            678999999998874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=1.9e-22  Score=183.24  Aligned_cols=254  Identities=17%  Similarity=0.060  Sum_probs=196.7

Q ss_pred             ccccEEEeecCCCCc--cccccccCCCcCCEEEccC-CCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCccc
Q 044468           60 ASLRVLIFLYNRSLE--NLPLGILNLVSLQHLDLSW-TGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLR  135 (396)
Q Consensus        60 ~~L~~L~l~~~~~~~--~l~~~l~~l~~L~~L~l~~-~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~  135 (396)
                      .++++|+++++...+  .+|..++++++|++|++++ +.+. .+|..+.++++|++|++++|...+.+|.. +..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCC
Confidence            679999999994434  6888999999999999994 7776 78989999999999999999766677876 89999999


Q ss_pred             EEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc-hhhhhhhccCCCCCc-ccceEEecccCCCccc
Q 044468          136 ALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG-ALQRLLNYCNSSRSI-NTQSLCLRHLNNSNLL  213 (396)
Q Consensus       136 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~  213 (396)
                      +|++++|.+.+.             ....+..+++|+.|++..+... ..+.     .+.+++ +|+.|+++++.- ...
T Consensus       129 ~L~Ls~N~l~~~-------------~p~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~~l~~~L~~L~L~~N~l-~~~  189 (313)
T 1ogq_A          129 TLDFSYNALSGT-------------LPPSISSLPNLVGITFDGNRISGAIPD-----SYGSFSKLFTSMTISRNRL-TGK  189 (313)
T ss_dssp             EEECCSSEEESC-------------CCGGGGGCTTCCEEECCSSCCEEECCG-----GGGCCCTTCCEEECCSSEE-EEE
T ss_pred             EEeCCCCccCCc-------------CChHHhcCCCCCeEECcCCcccCcCCH-----HHhhhhhcCcEEECcCCee-ecc
Confidence            999999988753             5677888999999999988875 3321     233444 699999987543 222


Q ss_pred             chhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec-CCccCCCCCccEEeecccccccee
Q 044468          214 SAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH-ATWLVLAPRAKVIRISNCQRLQEI  292 (396)
Q Consensus       214 ~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~l~~l~~L~~L~l~~~~~l~~~  292 (396)
                      ....+..++ |+.|+++.+.++.......        +.+++|++|++.+|.++. .+.+..+++|++|+++++.....+
T Consensus       190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          190 IPPTFANLN-LAFVDLSRNMLEGDASVLF--------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             CCGGGGGCC-CSEEECCSSEEEECCGGGC--------CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC
T ss_pred             CChHHhCCc-ccEEECcCCcccCcCCHHH--------hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcC
Confidence            223456665 9999999888764332222        278999999999997775 555777999999999998732233


Q ss_pred             ecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCC
Q 044468          293 ISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLD  356 (396)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~  356 (396)
                      ..             .+..+++|++|+++++.--..++.. ..+++|+.+++.+.+.+...|..
T Consensus       261 p~-------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~  310 (313)
T 1ogq_A          261 PQ-------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             CG-------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred             Ch-------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence            22             5667899999999998533356554 77999999999999888876654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=7.9e-22  Score=180.31  Aligned_cols=219  Identities=19%  Similarity=0.220  Sum_probs=140.5

Q ss_pred             CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEec
Q 044468           35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNL  114 (396)
Q Consensus        35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l  114 (396)
                      ..+++.|+++++.+..+|.. +.++++|++|++++| .+..+|..++++++|++|++++|.++.+|..+.++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            46778888888888777776 666888888888888 6667777778888888888888887778877888888888888


Q ss_pred             ccccCCCCCCcchhc---------CCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhh
Q 044468          115 EYTFCLSRIPQPVIS---------DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQ  185 (396)
Q Consensus       115 ~~~~~~~~~~~~~i~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  185 (396)
                      ++|+..+.+|.. +.         .+++|++|++.+|.+..              ....+..+++|+.|++..+....++
T Consensus       158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------------lp~~l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS--------------LPASIANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC--------------CCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred             CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc--------------chHhhcCCCCCCEEEccCCCCCcCc
Confidence            887677777765 33         36667777776666553              2334555666666666655543221


Q ss_pred             hhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccc-cccccCcEeEEeCc
Q 044468          186 RLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRET-RGFHSLQKVYINYS  264 (396)
Q Consensus       186 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  264 (396)
                      .                              .+..+++|++|+++.+.+...         +|.. +.+++|++|++.+|
T Consensus       223 ~------------------------------~l~~l~~L~~L~Ls~n~~~~~---------~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          223 P------------------------------AIHHLPKLEELDLRGCTALRN---------YPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             G------------------------------GGGGCTTCCEEECTTCTTCCB---------CCCCTTCCCCCCEEECTTC
T ss_pred             h------------------------------hhccCCCCCEEECcCCcchhh---------hHHHhcCCCCCCEEECCCC
Confidence            1                              234455555555553333211         1111 25666777777666


Q ss_pred             -eeecCC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccC
Q 044468          265 -KFRHAT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEG  322 (396)
Q Consensus       265 -~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  322 (396)
                       ....++ .++.+++|++|++++|.....++.             .+..+++|+.+.+..
T Consensus       264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-------------~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-------------LIAQLPANCIILVPP  310 (328)
T ss_dssp             TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-------------GGGGSCTTCEEECCG
T ss_pred             CchhhcchhhhcCCCCCEEeCCCCCchhhccH-------------HHhhccCceEEeCCH
Confidence             344444 355677777777777665555543             555667777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=6.9e-22  Score=180.68  Aligned_cols=86  Identities=23%  Similarity=0.326  Sum_probs=71.8

Q ss_pred             cCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEE
Q 044468           58 SMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRAL  137 (396)
Q Consensus        58 ~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L  137 (396)
                      ...++++|+++++ .++.+|..++++++|++|++++|.++.+|..+.++++|++|++++|.+. .+|.. ++.+++|++|
T Consensus        79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred             cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence            4578899999998 7778888888899999999999988888888888999999999988444 77776 8888888888


Q ss_pred             EeeccCccc
Q 044468          138 RMFECGFKV  146 (396)
Q Consensus       138 ~l~~~~~~~  146 (396)
                      ++.+|...+
T Consensus       156 ~L~~n~~~~  164 (328)
T 4fcg_A          156 SIRACPELT  164 (328)
T ss_dssp             EEEEETTCC
T ss_pred             ECCCCCCcc
Confidence            888876554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=2.6e-21  Score=178.89  Aligned_cols=274  Identities=18%  Similarity=0.147  Sum_probs=117.9

Q ss_pred             CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCCCCCccc-hhhhcCCcccEE
Q 044468           35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCL  112 (396)
Q Consensus        35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L  112 (396)
                      |+.....+++++.+..+|.+ +  .++|++|++++| .++.++. .+.++++|++|++++|.++.++ ..+.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~~-~--~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSG-L--TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTT-C--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccccccc-c--cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            34444445555555555543 1  135555555555 4444432 4455555555555555555432 234555555555


Q ss_pred             ecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecc-cchhhhhhhcc
Q 044468          113 NLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI-FGALQRLLNYC  191 (396)
Q Consensus       113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~  191 (396)
                      ++++| ....++...++.+++|++|++++|.+...            .....+.++++|+.|++..+. ......    .
T Consensus       106 ~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~  168 (353)
T 2z80_A          106 DLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTL------------GETSLFSHLTKLQILRVGNMDTFTKIQR----K  168 (353)
T ss_dssp             ECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSS------------CSSCSCTTCTTCCEEEEEESSSCCEECT----T
T ss_pred             ECCCC-cCCcCCHhHhCCCccCCEEECCCCCCccc------------CchhhhccCCCCcEEECCCCccccccCH----H
Confidence            55554 23334433345555555555555544432            001234445555555555542 221110    1


Q ss_pred             CCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc
Q 044468          192 NSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW  271 (396)
Q Consensus       192 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~  271 (396)
                      .+.++++|+.|+++++.- .......+..+++|++|+++.+.+..+.....        ..+++|++|++++|.++.++.
T Consensus       169 ~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             TTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HHTTTEEEEEEESCBCTTCCC
T ss_pred             HccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhh--------hhcccccEEECCCCccccccc
Confidence            233444455555554321 11111234445555555555444432221110        034555555555554443221


Q ss_pred             -----cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCC-CCCCCcceEEec
Q 044468          272 -----LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSY-LPFPRLKEICVW  345 (396)
Q Consensus       272 -----l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~  345 (396)
                           ....+.++.++++++. +......        .+...+..+++|+.|+++++ .+..++... ..+++|+.|++.
T Consensus       240 ~~l~~~~~~~~l~~l~L~~~~-l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          240 SELSTGETNSLIKKFTFRNVK-ITDESLF--------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             C------CCCCCCEEEEESCB-CCHHHHH--------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccccchhhcccccccc-ccCcchh--------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence                 1223444455544432 1110000        01112334555555555554 344444443 345555555555


Q ss_pred             cCc
Q 044468          346 KCA  348 (396)
Q Consensus       346 ~c~  348 (396)
                      +++
T Consensus       310 ~N~  312 (353)
T 2z80_A          310 TNP  312 (353)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=5.5e-21  Score=182.07  Aligned_cols=242  Identities=19%  Similarity=0.246  Sum_probs=171.1

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~   94 (396)
                      .+.++..+.++..+|.. -.++++.|++++|.+..++...+..+++|++|++++| .+..++ ..+.++++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence            45677777777777664 2257788888888877766555778888888888888 555554 56777888888888888


Q ss_pred             CCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           95 GITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        95 ~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      .++.++. .+..+++|++|++++| .+..++...+..+++|++|++.++.....            .....+.++++|+.
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY------------ISEGAFEGLSNLRY  189 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCSSCCE
T ss_pred             cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce------------eCcchhhcccccCe
Confidence            8877765 3677888888888887 34455554477788888888887543321            13345667778888


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      |++..+....++      .+.++++|+.|+++++. ........+.++++|++|+++.+.++.+......        .+
T Consensus       190 L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l  254 (440)
T 3zyj_A          190 LNLAMCNLREIP------NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--------NL  254 (440)
T ss_dssp             EECTTSCCSSCC------CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSST--------TC
T ss_pred             ecCCCCcCcccc------ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhc--------CC
Confidence            887777665443      35566668888888753 3333334577888899999988888766543332        67


Q ss_pred             ccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468          254 HSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~  287 (396)
                      ++|++|++++|.++.++.  +..+++|+.|++++++
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            889999999988887654  5678899999988765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=6.2e-21  Score=182.35  Aligned_cols=242  Identities=17%  Similarity=0.180  Sum_probs=172.6

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~   94 (396)
                      .+.++..+.++..+|.. -.++++.|++++|.+..+++..+..+++|++|++++| .+..++ ..+.++++|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence            46677777777777653 2357888888888887765555788888888888888 555544 56778888888888888


Q ss_pred             CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      .++.+|.. +.++++|++|++++|. +..++...+..+++|++|++.++.....            .....+.++++|+.
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~~  200 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEY------------ISEGAFEGLFNLKY  200 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCTTCCE
T ss_pred             cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccc------------cChhhccCCCCCCE
Confidence            88877654 6778888888888873 4455554577888888888887543321            13345677788888


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      |+++.+....++      .+..+++|+.|+++++.- .......+.++++|+.|+++.+.+..+......        .+
T Consensus       201 L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l  265 (452)
T 3zyi_A          201 LNLGMCNIKDMP------NLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--------GL  265 (452)
T ss_dssp             EECTTSCCSSCC------CCTTCTTCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTTT--------TC
T ss_pred             EECCCCcccccc------cccccccccEEECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHhc--------CC
Confidence            888777765543      355666788888887543 333334577888899999988888766543322        67


Q ss_pred             ccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468          254 HSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~  287 (396)
                      ++|++|++++|.++.++.  +..+++|++|++++++
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            889999999888877654  5678889999988765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=2e-21  Score=176.07  Aligned_cols=244  Identities=20%  Similarity=0.175  Sum_probs=149.9

Q ss_pred             cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc---cccccCCCcCCEEEccC
Q 044468           17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL---PLGILNLVSLQHLDLSW   93 (396)
Q Consensus        17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l---~~~l~~l~~L~~L~l~~   93 (396)
                      +.++.++++++.+|.. ..++|+.|++++|.+..++..++..+++|++|++++| .++..   +..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence            5677777777777653 2357888888888877777765678888888888887 55433   44555678888888888


Q ss_pred             CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      |.+..+|..+..+++|++|++++|......+...+..+++|++|++.+|.+...             ....+..+++|+.
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~  154 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------------FNGIFNGLSSLEV  154 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-------------STTTTTTCTTCCE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-------------chhhcccCcCCCE
Confidence            877777777777888888888877443332213377778888888888776652             3445666677777


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      |++.++......   ....+.++++|+.|+++++.- .......+..+++|++|+++.+.+..+.....        ..+
T Consensus       155 L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l  222 (306)
T 2z66_A          155 LKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY--------KCL  222 (306)
T ss_dssp             EECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCSBCCSGGG--------TTC
T ss_pred             EECCCCcccccc---chhHHhhCcCCCEEECCCCCc-CCcCHHHhcCCCCCCEEECCCCccCccChhhc--------cCc
Confidence            776665543200   012344455566666665432 22222235556666666666655554332111        145


Q ss_pred             ccCcEeEEeCceeecCC--ccCCCC-CccEEeecccc
Q 044468          254 HSLQKVYINYSKFRHAT--WLVLAP-RAKVIRISNCQ  287 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~--~l~~l~-~L~~L~l~~~~  287 (396)
                      ++|++|++++|.++...  .+..++ +|++|++++++
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            66666666666555432  244443 66666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=1.1e-20  Score=180.27  Aligned_cols=274  Identities=21%  Similarity=0.212  Sum_probs=154.5

Q ss_pred             ccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccC
Q 044468           14 KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSW   93 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~   93 (396)
                      ++|++|++++|.+..++..  .++|++|++++|.+..+| + +..+++|++|++++| .++.+|..+   .+|++|++++
T Consensus       111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~  182 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN  182 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred             CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence            5677777777777665432  268888888888887777 3 788888889988888 666666543   5888888888


Q ss_pred             CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      |.++.+| .++++++|++|++++|. ...+|..    .++|++|++.+|.+...               ..+..+++|+.
T Consensus       183 n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~~l---------------p~~~~l~~L~~  241 (454)
T 1jl5_A          183 NQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILEEL---------------PELQNLPFLTT  241 (454)
T ss_dssp             SCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSSC---------------CCCTTCTTCCE
T ss_pred             CcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCCcc---------------cccCCCCCCCE
Confidence            8888777 57888888888888874 3344432    25788888888876642               13667777887


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeec----------ccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNID----------AGE  243 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~----------~~~  243 (396)
                      |+++.+....++..        .++|+.|+++++.-.. ..    ..+++|+.|+++.+.++.+..-          ...
T Consensus       242 L~l~~N~l~~l~~~--------~~~L~~L~l~~N~l~~-l~----~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~  308 (454)
T 1jl5_A          242 IYADNNLLKTLPDL--------PPSLEALNVRDNYLTD-LP----ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE  308 (454)
T ss_dssp             EECCSSCCSSCCSC--------CTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred             EECCCCcCCccccc--------ccccCEEECCCCcccc-cC----cccCcCCEEECcCCccCcccCcCCcCCEEECcCCc
Confidence            77777766543321        2346777776543211 11    1125566666665555432100          000


Q ss_pred             ccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468          244 VKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL  323 (396)
Q Consensus       244 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  323 (396)
                      -..++.  ..++|++|++++|.++.++..  +++|++|+++++. ++.+.              .  .+++|++|+++++
T Consensus       309 l~~i~~--~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~-l~~lp--------------~--~l~~L~~L~L~~N  367 (454)
T 1jl5_A          309 IRSLCD--LPPSLEELNVSNNKLIELPAL--PPRLERLIASFNH-LAEVP--------------E--LPQNLKQLHVEYN  367 (454)
T ss_dssp             CSEECC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-CSCCC--------------C--CCTTCCEEECCSS
T ss_pred             CCcccC--CcCcCCEEECCCCcccccccc--CCcCCEEECCCCc-ccccc--------------c--hhhhccEEECCCC
Confidence            000000  124566666666655554432  4666666666553 33331              1  3566777777666


Q ss_pred             cccc--cccCCCCCC-------------CCcceEEeccCcccc
Q 044468          324 QNLK--SIHSSYLPF-------------PRLKEICVWKCAELK  351 (396)
Q Consensus       324 ~~l~--~~~~~~~~~-------------~~L~~L~i~~c~~L~  351 (396)
                      .--.  .++.....+             ++|+.|++.+++ ++
T Consensus       368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~  409 (454)
T 1jl5_A          368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LR  409 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCC------------------------
T ss_pred             CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CC
Confidence            3222  233333333             567777776654 44

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=1.9e-22  Score=183.67  Aligned_cols=235  Identities=13%  Similarity=0.066  Sum_probs=144.5

Q ss_pred             cccEEEcccccccccc-CC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEcc
Q 044468           15 EITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLS   92 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~   92 (396)
                      .++..+++.+.+.... .. ..+++|+.|++++|.+..+++..+..+++|++|++++| .+...+. +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECc
Confidence            3455566666665532 22 56778889999988888777655888889999999888 6665544 7788889999998


Q ss_pred             CCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468           93 WTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN  172 (396)
Q Consensus        93 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  172 (396)
                      +|.++.++    ..++|++|++++|. ...++   ...+++|++|++.+|.+...             ....+..+++|+
T Consensus        89 ~n~l~~l~----~~~~L~~L~l~~n~-l~~~~---~~~~~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~  147 (317)
T 3o53_A           89 NNYVQELL----VGPSIETLHAANNN-ISRVS---CSRGQGKKNIYLANNKITML-------------RDLDEGCRSRVQ  147 (317)
T ss_dssp             SSEEEEEE----ECTTCCEEECCSSC-CSEEE---ECCCSSCEEEECCSSCCCSG-------------GGBCTGGGSSEE
T ss_pred             CCcccccc----CCCCcCEEECCCCc-cCCcC---ccccCCCCEEECCCCCCCCc-------------cchhhhccCCCC
Confidence            88877665    34788888888874 33333   23467888888888887763             334556667777


Q ss_pred             EEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccc
Q 044468          173 LLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRG  252 (396)
Q Consensus       173 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~  252 (396)
                      .|+++.+.........   ....+++|+.|+++++.-.....   ...+++|++|+++.+.++.+.....         .
T Consensus       148 ~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~---------~  212 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAE---LAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGPEFQ---------S  212 (317)
T ss_dssp             EEECTTSCCCEEEGGG---GGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECGGGG---------G
T ss_pred             EEECCCCCCCcccHHH---HhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchhhhc---------c
Confidence            7776666554322110   01123446666665543211111   2235566666666555554432211         4


Q ss_pred             cccCcEeEEeCceeecCCc-cCCCCCccEEeecccc
Q 044468          253 FHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       253 ~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~  287 (396)
                      +++|++|++++|.++.++. +..+++|++|++++++
T Consensus       213 l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence            5666666666665555432 4445666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=4.1e-21  Score=174.03  Aligned_cols=238  Identities=24%  Similarity=0.290  Sum_probs=188.7

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCcc---ChHHHhcCccccEEEeecCCCCccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTV---SNNFFHSMASLRVLIFLYNRSLENL   76 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~l   76 (396)
                      .+++.+|. ...+++++|++++|.+..++..  ..+++|+.|++++|.+..+   +.. +..+++|++|++++| .+..+
T Consensus        17 ~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l   93 (306)
T 2z66_A           17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITM   93 (306)
T ss_dssp             SCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEE
T ss_pred             CCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC-ccccC
Confidence            45667764 3346899999999999998764  7899999999999988654   455 778999999999999 78888


Q ss_pred             cccccCCCcCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhc
Q 044468           77 PLGILNLVSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRIL  154 (396)
Q Consensus        77 ~~~l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~  154 (396)
                      |..+..+++|++|++++|.++.++.  .+.++++|++|++++|......+.. +..+++|++|++.+|.+...       
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~-------  165 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQEN-------  165 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGG-------
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccc-------
Confidence            8889999999999999999887764  6889999999999998655555554 88999999999999987641       


Q ss_pred             cCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccc
Q 044468          155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF  234 (396)
Q Consensus       155 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i  234 (396)
                           .....+..+++|+.|+++.+.......    ..+.++++|+.|+++++.- .......+..+++|+.|+++.+.+
T Consensus       166 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          166 -----FLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             -----EECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             -----cchhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCC
Confidence                 245677888999999999887765421    3456677899999998653 333333477889999999998888


Q ss_pred             ceeeecccccccccccccc-ccCcEeEEeCceeec
Q 044468          235 EELNIDAGEVKRIRETRGF-HSLQKVYINYSKFRH  268 (396)
Q Consensus       235 ~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~  268 (396)
                      .........        .+ ++|++|++.+|.++.
T Consensus       236 ~~~~~~~~~--------~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          236 MTSKKQELQ--------HFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CBCSSSSCC--------CCCTTCCEEECTTCCEEC
T ss_pred             cccCHHHHH--------hhhccCCEEEccCCCeec
Confidence            754432221        45 599999999997765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=5.6e-20  Score=175.33  Aligned_cols=279  Identities=20%  Similarity=0.186  Sum_probs=148.6

Q ss_pred             ccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccC
Q 044468           14 KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSW   93 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~   93 (396)
                      ++|++|++++|.+..++.  ..++|+.|++++|.+..++..    .++|++|++++| .++.+| .++++++|++|++++
T Consensus        91 ~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             TTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence            456666666666555543  235666666666655544321    156677777776 555565 366677777777777


Q ss_pred             CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      |.++.+|...   .+|++|++++|. ...+| . ++.+++|++|++.+|.+.+.           +.      ..++|+.
T Consensus       163 N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~-~~~l~~L~~L~l~~N~l~~l-----------~~------~~~~L~~  219 (454)
T 1jl5_A          163 NSLKKLPDLP---PSLEFIAAGNNQ-LEELP-E-LQNLPFLTAIYADNNSLKKL-----------PD------LPLSLES  219 (454)
T ss_dssp             SCCSCCCCCC---TTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSSCCSSC-----------CC------CCTTCCE
T ss_pred             CcCcccCCCc---ccccEEECcCCc-CCcCc-c-ccCCCCCCEEECCCCcCCcC-----------CC------CcCcccE
Confidence            7666665432   466777777663 33355 2 66677777777777665542           00      0136677


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      |++..+....++      .+.++++|+.|+++++.-. ...    ..+++|+.|+++.+.++.+..            .+
T Consensus       220 L~l~~n~l~~lp------~~~~l~~L~~L~l~~N~l~-~l~----~~~~~L~~L~l~~N~l~~l~~------------~~  276 (454)
T 1jl5_A          220 IVAGNNILEELP------ELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDLPE------------LP  276 (454)
T ss_dssp             EECCSSCCSSCC------CCTTCTTCCEEECCSSCCS-SCC----SCCTTCCEEECCSSCCSCCCC------------CC
T ss_pred             EECcCCcCCccc------ccCCCCCCCEEECCCCcCC-ccc----ccccccCEEECCCCcccccCc------------cc
Confidence            777666554333      2445666777777664322 111    123677777777666554221            23


Q ss_pred             ccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeeccc-ccccchh---ccccccccccCcceeeccCCcccccc
Q 044468          254 HSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISME-KLGEISA---EVMDNLILFGRLEYLILEGLQNLKSI  329 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~  329 (396)
                      ++|++|++++|.++.++.+  .++|++|+++++. ++.+.... .....+.   .+...-..+++|+.|+++++ .+..+
T Consensus       277 ~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~l  352 (454)
T 1jl5_A          277 QSLTFLDVSENIFSGLSEL--PPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEV  352 (454)
T ss_dssp             TTCCEEECCSSCCSEESCC--CTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC
T ss_pred             CcCCEEECcCCccCcccCc--CCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCC-ccccc
Confidence            5566666666644443322  1344444444332 11110000 0000000   00000112577888888777 46666


Q ss_pred             cCCCCCCCCcceEEeccCcccccCC
Q 044468          330 HSSYLPFPRLKEICVWKCAELKKLP  354 (396)
Q Consensus       330 ~~~~~~~~~L~~L~i~~c~~L~~lp  354 (396)
                      +.   .+++|+.|++.++ ++..+|
T Consensus       353 p~---~l~~L~~L~L~~N-~l~~l~  373 (454)
T 1jl5_A          353 PE---LPQNLKQLHVEYN-PLREFP  373 (454)
T ss_dssp             CC---CCTTCCEEECCSS-CCSSCC
T ss_pred             cc---hhhhccEEECCCC-CCCcCC
Confidence            55   4678888888876 455544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=3.3e-20  Score=184.78  Aligned_cols=340  Identities=18%  Similarity=0.137  Sum_probs=228.5

Q ss_pred             CCCCC--ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468            4 LTGAP--RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-   78 (396)
Q Consensus         4 l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-   78 (396)
                      ++.++  .|..+++|++|++++|.+..++..  .++++|++|++++|.+..++...|..+++|++|++++| .+..++. 
T Consensus        64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~  142 (635)
T 4g8a_A           64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENF  142 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTC
T ss_pred             CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChh
Confidence            44453  588999999999999999998664  78999999999999999998887999999999999999 7777764 


Q ss_pred             cccCCCcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCC------------------------
Q 044468           79 GILNLVSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLK------------------------  132 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~------------------------  132 (396)
                      .++++++|++|++++|.++  .+|..+..+++|++|++++|.+....+.. +..+.                        
T Consensus       143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~~i~~~~~  221 (635)
T 4g8a_A          143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAF  221 (635)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred             hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcccCcccccCcccc
Confidence            5889999999999999887  46778899999999999988433221111 22111                        


Q ss_pred             ---cccEEEeeccCccch-------------------------------h------------------------------
Q 044468          133 ---MLRALRMFECGFKVE-------------------------------Q------------------------------  148 (396)
Q Consensus       133 ---~L~~L~l~~~~~~~~-------------------------------~------------------------------  148 (396)
                         .++.+.+.++.....                               .                              
T Consensus       222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~  301 (635)
T 4g8a_A          222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL  301 (635)
T ss_dssp             TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred             cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence               112222222110000                               0                              


Q ss_pred             ----------------------ccc-------hhccC----C----------------chhhhHhhhcCCCCcEEEEEec
Q 044468          149 ----------------------EAD-------RILFG----D----------------SEVLVEELLALKHLNLLTVTLQ  179 (396)
Q Consensus       149 ----------------------~~~-------~~~~~----~----------------~~~~~~~l~~l~~L~~L~l~~~  179 (396)
                                            ...       .+...    .                ..........++.|+.+++..+
T Consensus       302 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n  381 (635)
T 4g8a_A          302 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN  381 (635)
T ss_dssp             TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS
T ss_pred             hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcc
Confidence                                  000       00000    0                0000111224678888887665


Q ss_pred             ccchhhh----------h-----------hhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceee
Q 044468          180 IFGALQR----------L-----------LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELN  238 (396)
Q Consensus       180 ~~~~~~~----------~-----------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~  238 (396)
                      .......          +           .....+..+++|+.+.+..+..........+..+++++.++++.+.+....
T Consensus       382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~  461 (635)
T 4g8a_A          382 GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  461 (635)
T ss_dssp             CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             ccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence            5421100          0           001234566778888887655444434345677889999999977776544


Q ss_pred             eccccccccccccccccCcEeEEeCce-eecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468          239 IDAGEVKRIRETRGFHSLQKVYINYSK-FRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL  315 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  315 (396)
                      ....        ..++.|+.|++.+|. ...+  ..+..+++|++|++++|. ++.++..            .+..+++|
T Consensus       462 ~~~~--------~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~------------~f~~l~~L  520 (635)
T 4g8a_A          462 NGIF--------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT------------AFNSLSSL  520 (635)
T ss_dssp             TTTT--------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT------------TTTTCTTC
T ss_pred             cccc--------ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH------------HHcCCCCC
Confidence            3222        268999999999984 4432  347779999999999985 6666431            45678999


Q ss_pred             ceeeccCCcccccccCC-CCCCCCcceEEeccCcccccCCCCCCCCC-CCceEEe
Q 044468          316 EYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCAELKKLPLDCNQGL-EQKIIIK  368 (396)
Q Consensus       316 ~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~~~-~~l~~~~  368 (396)
                      +.|+++++ ++..++.. ...+++|+.|+++++ +++.+|+...... +.++.+.
T Consensus       521 ~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          521 QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             CEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEE
T ss_pred             CEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEE
Confidence            99999998 57666543 456899999999987 5888777655443 5676664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=4e-20  Score=181.88  Aligned_cols=255  Identities=18%  Similarity=0.141  Sum_probs=168.0

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      ++++|+++++.++.+|.... ++|+.|++++|.+..+|.    .+++|++|++++| .++.+|.   .+++|++|++++|
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence            57788888888887776522 688888888888877765    5678888888888 6777765   5678888888888


Q ss_pred             CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468           95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL  174 (396)
Q Consensus        95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  174 (396)
                      .++.+|.   .+++|++|++++| .+..+|..    +++|++|++++|.+...              .   ....+|+.|
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l--------------~---~~~~~L~~L  166 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL--------------P---ALPSELCKL  166 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC--------------C---CCCTTCCEE
T ss_pred             cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCc--------------C---CccCCCCEE
Confidence            8887775   5677888888887 44455542    37788888888876653              0   123566767


Q ss_pred             EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccc
Q 044468          175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH  254 (396)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~  254 (396)
                      .+..+....++        ..+++|+.|+++++.- ....    ..+++|+.|+++.|.++.+..            .++
T Consensus       167 ~L~~N~l~~l~--------~~~~~L~~L~Ls~N~l-~~l~----~~~~~L~~L~L~~N~l~~l~~------------~~~  221 (622)
T 3g06_A          167 WAYNNQLTSLP--------MLPSGLQELSVSDNQL-ASLP----TLPSELYKLWAYNNRLTSLPA------------LPS  221 (622)
T ss_dssp             ECCSSCCSCCC--------CCCTTCCEEECCSSCC-SCCC----CCCTTCCEEECCSSCCSSCCC------------CCT
T ss_pred             ECCCCCCCCCc--------ccCCCCcEEECCCCCC-CCCC----CccchhhEEECcCCcccccCC------------CCC
Confidence            77666655443        2234477777766432 2211    123567777777666654321            356


Q ss_pred             cCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCC
Q 044468          255 SLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYL  334 (396)
Q Consensus       255 ~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  334 (396)
                      +|++|++++|.++.++  ..+++|++|+++++. ++.+..                .+++|+.|++++| .+..++....
T Consensus       222 ~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~----------------~~~~L~~L~Ls~N-~L~~lp~~l~  281 (622)
T 3g06_A          222 GLKELIVSGNRLTSLP--VLPSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYRN-QLTRLPESLI  281 (622)
T ss_dssp             TCCEEECCSSCCSCCC--CCCTTCCEEECCSSC-CSCCCC----------------CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred             CCCEEEccCCccCcCC--CCCCcCcEEECCCCC-CCcCCc----------------ccccCcEEeCCCC-CCCcCCHHHh
Confidence            7777777777666665  446777777777663 444321                4567777777776 4666666566


Q ss_pred             CCCCcceEEeccCc
Q 044468          335 PFPRLKEICVWKCA  348 (396)
Q Consensus       335 ~~~~L~~L~i~~c~  348 (396)
                      .+++|+.|++.+++
T Consensus       282 ~l~~L~~L~L~~N~  295 (622)
T 3g06_A          282 HLSSETTVNLEGNP  295 (622)
T ss_dssp             GSCTTCEEECCSCC
T ss_pred             hccccCEEEecCCC
Confidence            67777777777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=2e-20  Score=167.72  Aligned_cols=218  Identities=19%  Similarity=0.220  Sum_probs=137.3

Q ss_pred             cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCC
Q 044468           17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTG   95 (396)
Q Consensus        17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~   95 (396)
                      ++++.+++++..+|.. ..++|+.|+++++.+..++...+..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence            5677777777777653 3468888888888887777655788888888888888 55555 5667788888888888885


Q ss_pred             -CCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           96 -ITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        96 -l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                       ++.+ |..+..+++|++|++++|.... ++...+..+++|++|++.+|.+...             ....+..+++|+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~  157 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQAL-------------PDDTFRDLGNLTH  157 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCE
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCccccc-------------CHhHhccCCCccE
Confidence             7766 5567788888888888874443 4333377788888888888877653             3334556666666


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      |++..+....++.                             ..+..+++|++|+++.+.+..+.....        +.+
T Consensus       158 L~l~~n~l~~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l  200 (285)
T 1ozn_A          158 LFLHGNRISSVPE-----------------------------RAFRGLHSLDRLLLHQNRVAHVHPHAF--------RDL  200 (285)
T ss_dssp             EECCSSCCCEECT-----------------------------TTTTTCTTCCEEECCSSCCCEECTTTT--------TTC
T ss_pred             EECCCCcccccCH-----------------------------HHhcCccccCEEECCCCcccccCHhHc--------cCc
Confidence            6665554432211                             113334455555555444443322111        144


Q ss_pred             ccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468          254 HSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~  287 (396)
                      ++|++|++++|.++.++.  +..+++|++|++++++
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            555555555555555442  4455566666665544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=1.9e-21  Score=177.06  Aligned_cols=271  Identities=15%  Similarity=0.082  Sum_probs=202.1

Q ss_pred             CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecc
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLE  115 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~  115 (396)
                      .++..+++.+.+...+...+..+++|++|++++| .++.++ ..+.++++|++|++++|.++..+. +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            3455566666666666665778889999999999 666554 678999999999999999986665 8899999999999


Q ss_pred             cccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCC
Q 044468          116 YTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSR  195 (396)
Q Consensus       116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  195 (396)
                      +|. ...     +...++|++|++.+|.+...             .   ...+++|+.|+++.+.......    ..+.+
T Consensus        89 ~n~-l~~-----l~~~~~L~~L~l~~n~l~~~-------------~---~~~~~~L~~L~l~~N~l~~~~~----~~~~~  142 (317)
T 3o53_A           89 NNY-VQE-----LLVGPSIETLHAANNNISRV-------------S---CSRGQGKKNIYLANNKITMLRD----LDEGC  142 (317)
T ss_dssp             SSE-EEE-----EEECTTCCEEECCSSCCSEE-------------E---ECCCSSCEEEECCSSCCCSGGG----BCTGG
T ss_pred             CCc-ccc-----ccCCCCcCEEECCCCccCCc-------------C---ccccCCCCEEECCCCCCCCccc----hhhhc
Confidence            984 333     33458999999999988764             1   2236789999999888766543    23456


Q ss_pred             CcccceEEecccCCCcccchhhh-hccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc-cC
Q 044468          196 SINTQSLCLRHLNNSNLLSAFSF-ASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW-LV  273 (396)
Q Consensus       196 ~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-l~  273 (396)
                      +++|+.|+++++.- .......+ ..+++|++|+++.+.++.+....          .+++|++|++++|.++.++. +.
T Consensus       143 l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~~  211 (317)
T 3o53_A          143 RSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----------VFAKLKTLDLSSNKLAFMGPEFQ  211 (317)
T ss_dssp             GSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC----------CCTTCCEEECCSSCCCEECGGGG
T ss_pred             cCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCCcCccccccc----------ccccCCEEECCCCcCCcchhhhc
Confidence            67799999988643 33322233 46789999999988888663211          57899999999998877643 67


Q ss_pred             CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccc-ccccCCCCCCCCcceEEeccCccccc
Q 044468          274 LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNL-KSIHSSYLPFPRLKEICVWKCAELKK  352 (396)
Q Consensus       274 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~~c~~L~~  352 (396)
                      .+++|++|+++++. ++.+..             .+..+++|+.|++++++-. ..++.....+++|+.+++.++..++.
T Consensus       212 ~l~~L~~L~L~~N~-l~~l~~-------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          212 SAAGVTWISLRNNK-LVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             GGTTCSEEECTTSC-CCEECT-------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             ccCcccEEECcCCc-ccchhh-------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            78999999999885 665543             4567899999999998644 24444566788999999988888877


Q ss_pred             CCCCCCCC
Q 044468          353 LPLDCNQG  360 (396)
Q Consensus       353 lp~~~~~~  360 (396)
                      .++.....
T Consensus       278 ~~~~~~~~  285 (317)
T 3o53_A          278 QNEEECTV  285 (317)
T ss_dssp             SSSCCCSS
T ss_pred             CchhccCC
Confidence            65544433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.2e-21  Score=178.08  Aligned_cols=250  Identities=14%  Similarity=0.104  Sum_probs=153.9

Q ss_pred             cCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccC--ccChHHHh-------cCccccEEEeecCCCCcccccc
Q 044468           10 IGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLG--TVSNNFFH-------SMASLRVLIFLYNRSLENLPLG   79 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~-------~l~~L~~L~l~~~~~~~~l~~~   79 (396)
                      ++..++|+++++++|.+ .+|.. ...  |+.|+++++.+.  .++.. +.       .+++|++|++++|...+.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34456788888888888 65553 222  888888888774  35554 33       6899999999999333367776


Q ss_pred             c--cCCCcCCEEEccCCCCCccchhhhcC-----CcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch
Q 044468           80 I--LNLVSLQHLDLSWTGITTLPIELKYL-----VNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR  152 (396)
Q Consensus        80 l--~~l~~L~~L~l~~~~l~~l~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~  152 (396)
                      +  +.+++|++|++++|.++.+|..+..+     ++|++|++++|.. ..++...++.+++|++|++++|.+.+.     
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----  188 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGE-----  188 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHH-----
T ss_pred             HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcc-----
Confidence            5  78999999999999998778777776     8999999999854 444433388999999999999986541     


Q ss_pred             hccCCchhhhHhh--hcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeee
Q 044468          153 ILFGDSEVLVEEL--LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY  230 (396)
Q Consensus       153 ~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  230 (396)
                            ...+..+  ..+++|+.|+++.+.....+.... ..+.++++|+.|+++++.-........+..+++|++|+++
T Consensus       189 ------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          189 ------RGLISALCPLKFPTLQVLALRNAGMETPSGVCS-ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             ------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH-HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred             ------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHH-HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence                  1123333  677777777777776653332211 0011233466666655432221111123334555555555


Q ss_pred             ccccceeeeccccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeecccc
Q 044468          231 FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQ  287 (396)
Q Consensus       231 ~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~  287 (396)
                      .|.++.+.          .. .+++|++|++++|.++.++.+..+++|++|++++++
T Consensus       262 ~N~l~~ip----------~~-~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          262 FTGLKQVP----------KG-LPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             TSCCSSCC----------SS-CCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             CCccChhh----------hh-ccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence            55554221          11 124555555555555555445555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=2.9e-19  Score=175.85  Aligned_cols=246  Identities=21%  Similarity=0.183  Sum_probs=196.7

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      .+++.+|..- .++|++|++++|.++.++.  .+++|++|++++|.+..+|.    .+++|++|++++| .+..+|.   
T Consensus        50 n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---  118 (622)
T 3g06_A           50 SGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---  118 (622)
T ss_dssp             SCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---
T ss_pred             CCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---
Confidence            3556666422 2799999999999998876  78999999999999988875    7799999999999 7888876   


Q ss_pred             CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468           82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL  161 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  161 (396)
                      .+++|++|++++|.++.+|..   +++|++|++++| ....+|.    .+++|+.|++.+|.++..              
T Consensus       119 ~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l--------------  176 (622)
T 3g06_A          119 LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL--------------  176 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC--------------
T ss_pred             CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC--------------
Confidence            578999999999999998864   589999999998 4455554    357899999999988864              


Q ss_pred             hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecc
Q 044468          162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA  241 (396)
Q Consensus       162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~  241 (396)
                      .   ..+++|+.|+++.+....++..        .++|+.|++.++.-. ...    ..+++|+.|++++|.++.+.   
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~l~~~--------~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~L~~lp---  237 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLASLPTL--------PSELYKLWAYNNRLT-SLP----ALPSGLKELIVSGNRLTSLP---  237 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCSSCCS-SCC----CCCTTCCEEECCSSCCSCCC---
T ss_pred             c---ccCCCCcEEECCCCCCCCCCCc--------cchhhEEECcCCccc-ccC----CCCCCCCEEEccCCccCcCC---
Confidence            1   4568899999999887654421        245999999876432 221    23578999999988887543   


Q ss_pred             ccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeecc
Q 044468          242 GEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILE  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  321 (396)
                              . .+++|++|++++|.++.++.  .+++|++|++++|. ++.++.             .+..+++|+.|+++
T Consensus       238 --------~-~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~-------------~l~~l~~L~~L~L~  292 (622)
T 3g06_A          238 --------V-LPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LTRLPE-------------SLIHLSSETTVNLE  292 (622)
T ss_dssp             --------C-CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CCSCCG-------------GGGGSCTTCEEECC
T ss_pred             --------C-CCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCC-CCcCCH-------------HHhhccccCEEEec
Confidence                    1 68999999999998888877  68999999999985 665543             56789999999999


Q ss_pred             CCc
Q 044468          322 GLQ  324 (396)
Q Consensus       322 ~~~  324 (396)
                      +++
T Consensus       293 ~N~  295 (622)
T 3g06_A          293 GNP  295 (622)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            986

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=3e-19  Score=170.67  Aligned_cols=242  Identities=18%  Similarity=0.149  Sum_probs=188.7

Q ss_pred             CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEec
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNL  114 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l  114 (396)
                      ..+.+++.+..+..+|.. +  .+++++|++++| .+..+ +..+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQG-I--PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSSCCSC-C--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCccCCC-C--CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            456788888888888875 2  368999999999 66655 567899999999999999999665 56889999999999


Q ss_pred             ccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEec-ccchhhhhhhccCC
Q 044468          115 EYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ-IFGALQRLLNYCNS  193 (396)
Q Consensus       115 ~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l  193 (396)
                      ++|. +..++...+..+++|++|++++|.+...             ....+.++++|+.|++..+ ....++.    ..+
T Consensus       131 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~~~~l~~i~~----~~~  192 (452)
T 3zyi_A          131 FDNW-LTVIPSGAFEYLSKLRELWLRNNPIESI-------------PSYAFNRVPSLMRLDLGELKKLEYISE----GAF  192 (452)
T ss_dssp             CSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEE-------------CTTTTTTCTTCCEEECCCCTTCCEECT----TTT
T ss_pred             CCCc-CCccChhhhcccCCCCEEECCCCCccee-------------CHhHHhcCCcccEEeCCCCCCccccCh----hhc
Confidence            9984 5566666588999999999999998864             4557888999999998873 3332221    346


Q ss_pred             CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--c
Q 044468          194 SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--W  271 (396)
Q Consensus       194 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~  271 (396)
                      .++++|+.|+++++.-....   .+..+++|+.|+++.|.+..+......        .+++|++|++.+|.++.+.  .
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~  261 (452)
T 3zyi_A          193 EGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPEIRPGSFH--------GLSSLKKLWVMNSQVSLIERNA  261 (452)
T ss_dssp             TTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSEECGGGGT--------TCTTCCEEECTTSCCCEECTTT
T ss_pred             cCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcccCccccc--------CccCCCEEEeCCCcCceECHHH
Confidence            67788999999886543322   367889999999999888876543322        7899999999999777753  4


Q ss_pred             cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468          272 LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ  324 (396)
Q Consensus       272 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  324 (396)
                      +..+++|++|+++++. ++.+..            .....+++|+.|++.+++
T Consensus       262 ~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          262 FDGLASLVELNLAHNN-LSSLPH------------DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTCTTCCEEECCSSC-CSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCc-CCccCh------------HHhccccCCCEEEccCCC
Confidence            7789999999999885 565543            134568999999998875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=2.4e-19  Score=170.70  Aligned_cols=242  Identities=19%  Similarity=0.150  Sum_probs=189.8

Q ss_pred             CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEec
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNL  114 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l  114 (396)
                      ..+.+++.+..+..+|.. +  .+++++|++++| .+..++ ..+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG-I--STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC-C--CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCcCCCC-C--CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            467888888889999876 3  378999999999 676654 67899999999999999999766 46889999999999


Q ss_pred             ccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecc-cchhhhhhhccCC
Q 044468          115 EYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI-FGALQRLLNYCNS  193 (396)
Q Consensus       115 ~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l  193 (396)
                      ++| .+..++...+..+++|++|++.+|.+...             ....+.++++|+.|++..+. ...++.    ..+
T Consensus       120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-------------~~~~~~~l~~L~~L~l~~~~~l~~i~~----~~~  181 (440)
T 3zyj_A          120 FDN-RLTTIPNGAFVYLSKLKELWLRNNPIESI-------------PSYAFNRIPSLRRLDLGELKRLSYISE----GAF  181 (440)
T ss_dssp             CSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEE-------------CTTTTTTCTTCCEEECCCCTTCCEECT----TTT
T ss_pred             CCC-cCCeeCHhHhhccccCceeeCCCCccccc-------------CHHHhhhCcccCEeCCCCCCCcceeCc----chh
Confidence            998 55566665589999999999999998864             45577889999999988743 222221    346


Q ss_pred             CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--c
Q 044468          194 SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--W  271 (396)
Q Consensus       194 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~  271 (396)
                      .++++|+.|+++++.-....   .+..+++|++|+++.|.++.+......        .+++|++|++.+|.++.++  .
T Consensus       182 ~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~  250 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNLREIP---NLTPLIKLDELDLSGNHLSAIRPGSFQ--------GLMHLQKLWMIQSQIQVIERNA  250 (440)
T ss_dssp             TTCSSCCEEECTTSCCSSCC---CCTTCSSCCEEECTTSCCCEECTTTTT--------TCTTCCEEECTTCCCCEECTTS
T ss_pred             hcccccCeecCCCCcCcccc---ccCCCcccCEEECCCCccCccChhhhc--------cCccCCEEECCCCceeEEChhh
Confidence            67788999999986443222   367889999999998888876543322        7899999999999777754  4


Q ss_pred             cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468          272 LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ  324 (396)
Q Consensus       272 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  324 (396)
                      +..+++|++|+++++. ++.+..            ..+..+++|+.|++.+++
T Consensus       251 ~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          251 FDNLQSLVEINLAHNN-LTLLPH------------DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             STTCTTCCEEECTTSC-CCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCC-CCccCh------------hHhccccCCCEEEcCCCC
Confidence            7789999999999885 565543            134568999999998875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=3.2e-19  Score=159.87  Aligned_cols=166  Identities=26%  Similarity=0.341  Sum_probs=135.4

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PL   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~   78 (396)
                      .+++.+|. +..+++++|++++|.+..++..  ..+++|++|++++|.+..+.+..+..+++|++|++++|..++.+ |.
T Consensus        21 ~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           21 QGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             SCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence            45666663 3457999999999999997643  88999999999999998875555899999999999999437766 57


Q ss_pred             cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .+..+++|++|++++|.++.+ |..+.++++|++|++++|. ...++...++.+++|++|++.+|.++..          
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------  168 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV----------  168 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE----------
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc----------
Confidence            788999999999999999866 5568899999999999984 4556655588999999999999988763          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccc
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFG  182 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~  182 (396)
                         ....+..+++|+.|++..+...
T Consensus       169 ---~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          169 ---PERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCC
T ss_pred             ---CHHHhcCccccCEEECCCCccc
Confidence               3345777888888887776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=2.3e-21  Score=185.85  Aligned_cols=324  Identities=17%  Similarity=0.110  Sum_probs=167.7

Q ss_pred             CCCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccCcc-ChHHHhcCc----cccEEEeecCCCCc-----
Q 044468           11 GMWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLGTV-SNNFFHSMA----SLRVLIFLYNRSLE-----   74 (396)
Q Consensus        11 ~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~l~----~L~~L~l~~~~~~~-----   74 (396)
                      ..+++|++|++++|.+..     ++.. ..+++|++|++++|.+.+. +..++..++    +|++|++++| .++     
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~  103 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG  103 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence            345556666666665542     2333 4455666666666555321 122223333    4666666655 333     


Q ss_pred             cccccccCCCcCCEEEccCCCCCcc-chhh-----hcCCcccEEecccccCCCC----CCcchhcCCCcccEEEeeccCc
Q 044468           75 NLPLGILNLVSLQHLDLSWTGITTL-PIEL-----KYLVNLKCLNLEYTFCLSR----IPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus        75 ~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l-----~~l~~L~~L~l~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                      .++..+..+++|++|++++|.++.. +..+     ...++|++|++++|.....    ++.. +..+++|++|++++|.+
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBC
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCc
Confidence            2344455555555555555554411 1111     1133455555555432221    1111 33345555555555443


Q ss_pred             cchhccc---------------hhcc-----CCchhhhHhhhcCCCCcEEEEEecccchhhhhhh-ccCCCCCcccceEE
Q 044468          145 KVEQEAD---------------RILF-----GDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN-YCNSSRSINTQSLC  203 (396)
Q Consensus       145 ~~~~~~~---------------~~~~-----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~~~~L~~L~  203 (396)
                      .......               .+..     .........+..+++|+.|+++.+.........- .....++++|+.|+
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            3210000               0000     0011235566677888888888776543211100 01122456688888


Q ss_pred             ecccCCCcccc----hhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC------ccC
Q 044468          204 LRHLNNSNLLS----AFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT------WLV  273 (396)
Q Consensus       204 l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~------~l~  273 (396)
                      ++++. .+...    ...+..+++|++|+++.+.+.+.+...... .+. . ..++|++|++.+|.+++..      .+.
T Consensus       263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~-~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~  338 (461)
T 1z7x_W          263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE-TLL-E-PGCQLESLWVKSCSFTAACCSHFSSVLA  338 (461)
T ss_dssp             CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH-HHT-S-TTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred             CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH-Hhc-c-CCccceeeEcCCCCCchHHHHHHHHHHh
Confidence            88763 33322    123556788888888877776443321111 000 0 2368999999998766532      245


Q ss_pred             CCCCccEEeeccccccceeecccccccchhcccccc-ccccCcceeeccCCcccc-----cccCCCCCCCCcceEEeccC
Q 044468          274 LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL-ILFGRLEYLILEGLQNLK-----SIHSSYLPFPRLKEICVWKC  347 (396)
Q Consensus       274 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~i~~c  347 (396)
                      .+++|++|+++++. +.+.....+.        ... ...++|++|++++|. +.     .++.....+++|+.|++.+|
T Consensus       339 ~~~~L~~L~Ls~n~-i~~~~~~~l~--------~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          339 QNRFLLELQISNNR-LEDAGVRELC--------QGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HCSSCCEEECCSSB-CHHHHHHHHH--------HHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             hCCCccEEEccCCc-cccccHHHHH--------HHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence            57999999999885 4433111100        011 126799999999984 55     44444556899999999988


Q ss_pred             cccc
Q 044468          348 AELK  351 (396)
Q Consensus       348 ~~L~  351 (396)
                      + +.
T Consensus       409 ~-i~  411 (461)
T 1z7x_W          409 C-LG  411 (461)
T ss_dssp             S-CC
T ss_pred             C-CC
Confidence            5 44

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=2.7e-20  Score=184.11  Aligned_cols=304  Identities=13%  Similarity=0.130  Sum_probs=154.3

Q ss_pred             CCccccEEEccccccccc-----cCC-CCCCCCcEEEccCCccCccC----hHHHhcCccccEEEeecCCCCcccccccc
Q 044468           12 MWKEITRMSLMQNAIQNL-----TET-PTCPHLRALFLHSNHLGTVS----NNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l-----~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      .+++|++|++++|.+.+.     +.. ..+++|+.|+++++.+..+.    ...+..+++|++|++++| .+..++..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence            567888888888876432     222 56778888888877664222    122567788888888887 5555666666


Q ss_pred             CCCcCCEEEccCCC-C---CccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           82 NLVSLQHLDLSWTG-I---TTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        82 ~l~~L~~L~l~~~~-l---~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      ++++|++|+++... .   ...+..+..+++|+.+++.++ ....++.. +..+++|++|++.+|.+...          
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~----------  308 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETE----------  308 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHH----------
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHH----------
Confidence            66777777775321 1   122223444455555555443 22233332 44455555555555543321          


Q ss_pred             chhhhHhhhcC------------------------CCCcEEEEEe-----------cccchhhhhhhccCCCCCcccceE
Q 044468          158 SEVLVEELLAL------------------------KHLNLLTVTL-----------QIFGALQRLLNYCNSSRSINTQSL  202 (396)
Q Consensus       158 ~~~~~~~l~~l------------------------~~L~~L~l~~-----------~~~~~~~~~~~~~~l~~~~~L~~L  202 (396)
                        .....+..+                        ++|+.|++..           +.... ..+..  ....+++|+.|
T Consensus       309 --~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~--l~~~~~~L~~L  383 (592)
T 3ogk_B          309 --DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIA--LAQGCQELEYM  383 (592)
T ss_dssp             --HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHH--HHHHCTTCSEE
T ss_pred             --HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHH--HHhhCccCeEE
Confidence              111223344                        4455454442           11110 00000  01123335555


Q ss_pred             EecccCCCcccchhhhhc-cccccceeee----ccccceeeecccccccccc-ccccccCcEeEEeCc--eeec--CCcc
Q 044468          203 CLRHLNNSNLLSAFSFAS-LRHLWTLHLY----FNDFEELNIDAGEVKRIRE-TRGFHSLQKVYINYS--KFRH--ATWL  272 (396)
Q Consensus       203 ~l~~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~i~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~--~l~~--l~~l  272 (396)
                      .+ .+...+......+.. +++|++|+++    ++.+++...+.   + ++. ...+++|++|++++|  .+++  +..+
T Consensus       384 ~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~---~-~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          384 AV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN---G-VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             EE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH---H-HHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             Ee-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH---H-HHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            55 223333332222332 4555555554    33333221100   0 000 014677777777654  2333  2222


Q ss_pred             C-CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccccc--ccCCCCCCCCcceEEeccCcc
Q 044468          273 V-LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKS--IHSSYLPFPRLKEICVWKCAE  349 (396)
Q Consensus       273 ~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~~  349 (396)
                      + .+++|++|++++|. +++.           +.......+++|++|++++|+ +..  ++.....+++|+.|++++|. 
T Consensus       459 ~~~~~~L~~L~L~~n~-l~~~-----------~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-  524 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVG-ESDE-----------GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-  524 (592)
T ss_dssp             HHSCTTCCEEEECSCC-SSHH-----------HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-
T ss_pred             HHhCccceEeeccCCC-CCHH-----------HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-
Confidence            2 36777777777664 3221           111234568999999999997 543  22223458999999999997 


Q ss_pred             ccc
Q 044468          350 LKK  352 (396)
Q Consensus       350 L~~  352 (396)
                      ++.
T Consensus       525 it~  527 (592)
T 3ogk_B          525 ASM  527 (592)
T ss_dssp             CCT
T ss_pred             CCH
Confidence            554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=8.5e-19  Score=158.74  Aligned_cols=195  Identities=18%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEe
Q 044468           34 TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLN  113 (396)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~  113 (396)
                      .+++|+.|+++++.+..++.  +..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence            34444444444444444432  444444444444444 3443333 444444444444444444443 344444455555


Q ss_pred             cccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCC
Q 044468          114 LEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNS  193 (396)
Q Consensus       114 l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l  193 (396)
                      +++|. ...++.  +..+++|++|++.+|.+...               ..+..+++|+.|+++.+.....+.      +
T Consensus       114 l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~------l  169 (308)
T 1h6u_A          114 LTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITNI---------------SPLAGLTNLQYLSIGNAQVSDLTP------L  169 (308)
T ss_dssp             CTTSC-CCCCGG--GTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCCEEECCSSCCCCCGG------G
T ss_pred             CCCCC-CCCchh--hcCCCCCCEEECCCCccCcC---------------ccccCCCCccEEEccCCcCCCChh------h
Confidence            44442 222222  44444555555544444332               114444445545444444333221      2


Q ss_pred             CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC
Q 044468          194 SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT  270 (396)
Q Consensus       194 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  270 (396)
                      .++++|+.|+++++.-. ...  .+..+++|++|+++.+.+.++..  .        ..+++|++|++.+|.++..+
T Consensus       170 ~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~N~l~~~~~--l--------~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVSP--L--------ANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             TTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCBCGG--G--------TTCTTCCEEEEEEEEEECCC
T ss_pred             cCCCCCCEEECCCCccC-cCh--hhcCCCCCCEEEccCCccCcccc--c--------cCCCCCCEEEccCCeeecCC
Confidence            33344555555543221 111  14555666666666555554321  0        15667777777776665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1.1e-19  Score=174.99  Aligned_cols=216  Identities=14%  Similarity=0.080  Sum_probs=127.2

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL  112 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L  112 (396)
                      ..+++|+.|++++|.+..+++..+..+++|++|++++| .+...++ ++.+++|++|++++|.++.+|.    .++|++|
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            34456777777777776665444677777777777777 5554433 6677777777777776665543    2667777


Q ss_pred             ecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccC
Q 044468          113 NLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCN  192 (396)
Q Consensus       113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  192 (396)
                      ++++|.+ ..++.   ..+++|++|++.+|.+.+.             ....+..+++|+.|+++.+.......    ..
T Consensus       105 ~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~  163 (487)
T 3oja_A          105 HAANNNI-SRVSC---SRGQGKKNIYLANNKITML-------------RDLDEGCRSRVQYLDLKLNEIDTVNF----AE  163 (487)
T ss_dssp             ECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSG-------------GGBCGGGGSSEEEEECTTSCCCEEEG----GG
T ss_pred             ECcCCcC-CCCCc---cccCCCCEEECCCCCCCCC-------------CchhhcCCCCCCEEECCCCCCCCcCh----HH
Confidence            7777633 33332   2456677777777766653             33445556666666666555443211    11


Q ss_pred             C-CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc
Q 044468          193 S-SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW  271 (396)
Q Consensus       193 l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~  271 (396)
                      + .++++|+.|+++++.-....   ....+++|+.|+++.|.+..+....         ..+++|+.|++++|.++.++.
T Consensus       164 l~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          164 LAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPEF---------QSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEECGGG---------GGGTTCSEEECTTSCCCEECT
T ss_pred             HhhhCCcccEEecCCCcccccc---ccccCCCCCEEECCCCCCCCCCHhH---------cCCCCccEEEecCCcCcccch
Confidence            1 12344666666654322211   1334667777777766666543321         156777777777776666543


Q ss_pred             -cCCCCCccEEeecccc
Q 044468          272 -LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       272 -l~~l~~L~~L~l~~~~  287 (396)
                       ++.+++|+.|++++++
T Consensus       232 ~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          232 ALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             TCCCCTTCCEEECTTCC
T ss_pred             hhccCCCCCEEEcCCCC
Confidence             5556777777777765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=4.7e-21  Score=183.65  Aligned_cols=259  Identities=17%  Similarity=0.105  Sum_probs=165.7

Q ss_pred             CccccEEEcccccccc--ccCC-CCCCCCcEEEccCCccCc-----cChHHHhcCccccEEEeecCCCCcc-ccccc-cC
Q 044468           13 WKEITRMSLMQNAIQN--LTET-PTCPHLRALFLHSNHLGT-----VSNNFFHSMASLRVLIFLYNRSLEN-LPLGI-LN   82 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~l-~~   82 (396)
                      .+++++|+++++.+..  .... ..+++|+.|++++|.+..     ++.. +..+++|++|++++| .++. .+..+ ..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~   79 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSN-ELGDVGVHCVLQG   79 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence            3578999999999876  3332 678999999999998863     3444 788999999999999 6653 22222 23


Q ss_pred             CC----cCCEEEccCCCCC-----ccchhhhcCCcccEEecccccCCCCCCc----chhcCCCcccEEEeeccCccchhc
Q 044468           83 LV----SLQHLDLSWTGIT-----TLPIELKYLVNLKCLNLEYTFCLSRIPQ----PVISDLKMLRALRMFECGFKVEQE  149 (396)
Q Consensus        83 l~----~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~----~~i~~l~~L~~L~l~~~~~~~~~~  149 (396)
                      +.    +|++|++++|.++     .++..+.++++|++|++++|......+.    ......++|++|++.+|.++..  
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--  157 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--  157 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--
Confidence            44    7999999999988     4577789999999999999854332222    2122356899999999988763  


Q ss_pred             cchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCC-CCcccceEEecccCCCcccc----hhhhhccccc
Q 044468          150 ADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSS-RSINTQSLCLRHLNNSNLLS----AFSFASLRHL  224 (396)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L  224 (396)
                             ........+..+++|+.|+++++.........-...+. ..++|+.|+++++.- ....    ...+..+++|
T Consensus       158 -------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L  229 (461)
T 1z7x_W          158 -------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASL  229 (461)
T ss_dssp             -------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC-BTTHHHHHHHHHHHCTTC
T ss_pred             -------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC-cHHHHHHHHHHHHhCCCc
Confidence                   11123556777899999999888764322111111111 233588888887643 3221    1235567888


Q ss_pred             cceeeeccccceeeeccccccccccccccccCcEeEEeCceeec-----CC-ccCCCCCccEEeeccc
Q 044468          225 WTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH-----AT-WLVLAPRAKVIRISNC  286 (396)
Q Consensus       225 ~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----l~-~l~~l~~L~~L~l~~~  286 (396)
                      ++|+++.+.+.+.+......++.   ..+++|++|++++|.+++     ++ .+..+++|++|+++++
T Consensus       230 ~~L~Ls~n~l~~~~~~~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          230 RELALGSNKLGDVGMAELCPGLL---HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHT---STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             cEEeccCCcCChHHHHHHHHHHh---cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            88888866665533211110000   035666666666665544     11 1333556666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=6.3e-18  Score=150.62  Aligned_cols=132  Identities=24%  Similarity=0.299  Sum_probs=93.3

Q ss_pred             ccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEE
Q 044468           14 KEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLD   90 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~   90 (396)
                      +++++|++++|.+..++. . ..+++|++|++++|.+..++...+..+++|++|++++| .++.++ ..+.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence            467788888887777554 2 67778888888888777666655777788888888887 555444 5567778888888


Q ss_pred             ccCCCCCccch-hhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccch
Q 044468           91 LSWTGITTLPI-ELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        91 l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      +++|.+..++. .+.++++|++|++++|.... .+|.. ++.+++|++|++++|.+...
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC
Confidence            88777776554 46777788888887774433 24554 77777888888887776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=4.3e-18  Score=151.74  Aligned_cols=217  Identities=17%  Similarity=0.115  Sum_probs=154.6

Q ss_pred             EEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCC
Q 044468           18 RMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGI   96 (396)
Q Consensus        18 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l   96 (396)
                      .++..+..+..+|.. -.++|+.|++++|.+..++...+..+++|++|++++| .+..++ ..+.++++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence            455556666667653 2257999999999998887655889999999999999 666665 4688899999999999999


Q ss_pred             Cccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468           97 TTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT  175 (396)
Q Consensus        97 ~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  175 (396)
                      +.++ ..+.++++|++|++.+|... .++...++.+++|++|++.+|.+...            .....+.++++|+.|+
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~------------~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF------------KLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCC------------CCCGGGGGCTTCCEEE
T ss_pred             CccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCcccee------------cCchhhccCCCCCEEE
Confidence            8665 45888999999999998544 44442388899999999999987753            2345666777777777


Q ss_pred             EEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcccccc----ceeeeccccceeeecccccccccccc
Q 044468          176 VTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLW----TLHLYFNDFEELNIDAGEVKRIRETR  251 (396)
Q Consensus       176 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~i~~l~~~~~~~~~~~~~~  251 (396)
                      ++.+......                             ...+..+++|+    +|+++.+.+..+.....         
T Consensus       156 Ls~N~l~~~~-----------------------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------  197 (276)
T 2z62_A          156 LSSNKIQSIY-----------------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------  197 (276)
T ss_dssp             CCSSCCCEEC-----------------------------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------
T ss_pred             CCCCCCCcCC-----------------------------HHHhhhhhhccccceeeecCCCcccccCcccc---------
Confidence            6655432211                             11233334444    56677777765543322         


Q ss_pred             ccccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468          252 GFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ  287 (396)
Q Consensus       252 ~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~  287 (396)
                      ...+|++|++++|.++.++.  +..+++|++|++++++
T Consensus       198 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            34578888888887777654  5678888888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=2.2e-19  Score=177.51  Aligned_cols=298  Identities=12%  Similarity=0.080  Sum_probs=179.9

Q ss_pred             cccEEEccccc-ccc--ccCC-CCCCCCcEEEccCCccCcc----ChHHHhcCccccEEEeecCCCCc-----ccccccc
Q 044468           15 EITRMSLMQNA-IQN--LTET-PTCPHLRALFLHSNHLGTV----SNNFFHSMASLRVLIFLYNRSLE-----NLPLGIL   81 (396)
Q Consensus        15 ~L~~L~l~~~~-~~~--l~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~l~   81 (396)
                      +|++|+++++. +..  ++.. ..+++|+.|++++|.+.+.    -..+...+++|++|+++++ .++     .++..+.
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIAR  217 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHh
Confidence            49999999886 322  4444 5899999999999977432    1223678999999999999 443     3444566


Q ss_pred             CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCC---CCCCcchhcCCCcccEEEeeccCccchhccchhccCCc
Q 044468           82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL---SRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDS  158 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~---~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  158 (396)
                      ++++|++|++++|.+..++..+.++++|++|++++....   ...+.. +..+++|+.+++..+...             
T Consensus       218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~-------------  283 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMGPN-------------  283 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCCEEEETTCCTT-------------
T ss_pred             hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhccccccccCccccchh-------------
Confidence            889999999999998889988999999999999864222   122333 778899999999875332             


Q ss_pred             hhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEec------------------------c--------
Q 044468          159 EVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLR------------------------H--------  206 (396)
Q Consensus       159 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~------------------------~--------  206 (396)
                       .....+..+++|+.|++..+......-.   ..+.++++|+.|++.                        +        
T Consensus       284 -~l~~~~~~~~~L~~L~Ls~~~l~~~~~~---~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~  359 (592)
T 3ogk_B          284 -EMPILFPFAAQIRKLDLLYALLETEDHC---TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME  359 (592)
T ss_dssp             -TGGGGGGGGGGCCEEEETTCCCCHHHHH---HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred             -HHHHHHhhcCCCcEEecCCCcCCHHHHH---HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence             2445566788999999987764322111   112334445555554                        2        


Q ss_pred             --cCCCcccchhh-hhccccccceeeeccccceeeeccccccccccccccccCcEeEEeC---c-eeecCCc-------c
Q 044468          207 --LNNSNLLSAFS-FASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINY---S-KFRHATW-------L  272 (396)
Q Consensus       207 --~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~---~-~l~~l~~-------l  272 (396)
                        +...+...... ...+++|++|+++++.+.+......+.       .+++|++|++.+   | .+++.+.       +
T Consensus       360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-------~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~  432 (592)
T 3ogk_B          360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-------YLKNLCDFRLVLLDREERITDLPLDNGVRSLL  432 (592)
T ss_dssp             STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-------HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred             cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-------hCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence              22222222111 123444444444444443322211110       355666666652   2 4443211       2


Q ss_pred             CCCCCccEEeeccccc-cceeecccccccchhccccccccccCcceeeccCCccccc--ccCCCCCCCCcceEEeccCcc
Q 044468          273 VLAPRAKVIRISNCQR-LQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKS--IHSSYLPFPRLKEICVWKCAE  349 (396)
Q Consensus       273 ~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~~  349 (396)
                      .++++|++|+++.|.. +....           .......+++|++|++++|. +..  ++.....+++|+.|++.+|+ 
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~-----------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-  499 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLG-----------LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-  499 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHH-----------HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-
T ss_pred             HhCCCCCEEEEecCCCCccHHH-----------HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-
Confidence            3366666666654432 11110           00122347788888888774 432  22223457899999999987 


Q ss_pred             cc
Q 044468          350 LK  351 (396)
Q Consensus       350 L~  351 (396)
                      ++
T Consensus       500 l~  501 (592)
T 3ogk_B          500 FS  501 (592)
T ss_dssp             CB
T ss_pred             Cc
Confidence            44

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=2.1e-18  Score=153.33  Aligned_cols=158  Identities=23%  Similarity=0.260  Sum_probs=97.3

Q ss_pred             CccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcC
Q 044468            8 PRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSL   86 (396)
Q Consensus         8 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L   86 (396)
                      .....+++|++|++.++.+..++....+++|++|++++|.+..++ . +..+++|++|++++| .++.++. .++++++|
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGN-QLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred             cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence            334456667777777776666655566777777777777666554 2 667777777777777 5554443 35667777


Q ss_pred             CEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhh
Q 044468           87 QHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEEL  165 (396)
Q Consensus        87 ~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (396)
                      ++|++++|.++.++.. +.++++|++|++++|. ...++...++.+++|++|++.+|.+...             ....+
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~  177 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL-------------PEGVF  177 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTT
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc-------------CHHHh
Confidence            7777777766655544 5667777777777763 3344444356677777777777766542             22334


Q ss_pred             hcCCCCcEEEEEecccc
Q 044468          166 LALKHLNLLTVTLQIFG  182 (396)
Q Consensus       166 ~~l~~L~~L~l~~~~~~  182 (396)
                      ..+++|+.|++..+...
T Consensus       178 ~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          178 DKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTCTTCCEEECCSSCCS
T ss_pred             cCCccCCEEECCCCcCC
Confidence            55556666665555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=1.6e-18  Score=157.01  Aligned_cols=198  Identities=20%  Similarity=0.230  Sum_probs=135.0

Q ss_pred             ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      .+..+++|++|+++++.+..++....+++|+.|++++|.+..++.  +..+++|++|++++| .++.++ .+..+++|++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~  111 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT  111 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred             cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCE
Confidence            345567777888887777777655677788888888777776665  677778888888877 566654 4677777888


Q ss_pred             EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcC
Q 044468           89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL  168 (396)
Q Consensus        89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  168 (396)
                      |++++|.++.++. +..+++|++|++++|. ...++.  ++.+++|++|++.+|.+...               ..+..+
T Consensus       112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l  172 (308)
T 1h6u_A          112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDL---------------TPLANL  172 (308)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCC---------------GGGTTC
T ss_pred             EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCC---------------hhhcCC
Confidence            8888777777654 6777778888887773 344443  66777788888877776653               126677


Q ss_pred             CCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceee
Q 044468          169 KHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELN  238 (396)
Q Consensus       169 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~  238 (396)
                      ++|+.|++..+.....+.      +.++++|+.|+++++.-....   .+..+++|+.|+++.+.+....
T Consensus       173 ~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          173 SKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEECCC
T ss_pred             CCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeecCC
Confidence            777777777776655443      344555777777765432222   2666777777877766665443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=1.8e-19  Score=163.64  Aligned_cols=128  Identities=20%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc--ccccccc-------CCCcCCEEEccCCCCC-ccchhh
Q 044468           34 TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE--NLPLGIL-------NLVSLQHLDLSWTGIT-TLPIEL  103 (396)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~l~-------~l~~L~~L~l~~~~l~-~l~~~l  103 (396)
                      ..++|+.|++++|.+ .+|.. +...  |++|+++++ .+.  .+|..+.       ++++|++|++++|.++ .+|..+
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~-~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQ-FTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHH-HHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc-ccHHH-HHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            344566666666666 66655 2222  666666666 432  2343333       5667777777777665 455544


Q ss_pred             --hcCCcccEEecccccCCCCCCcchhcCC-----CcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEE
Q 044468          104 --KYLVNLKCLNLEYTFCLSRIPQPVISDL-----KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTV  176 (396)
Q Consensus       104 --~~l~~L~~L~l~~~~~~~~~~~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  176 (396)
                        ..+++|++|++++|..... |.. ++.+     ++|++|++++|.+...             ....+.++++|+.|++
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNF-------------SCEQVRVFPALSTLDL  180 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCC-------------CTTTCCCCSSCCEEEC
T ss_pred             HHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccc-------------hHHHhccCCCCCEEEC
Confidence              6666777777776643333 433 4444     6667777766666542             3345556666666666


Q ss_pred             Eeccc
Q 044468          177 TLQIF  181 (396)
Q Consensus       177 ~~~~~  181 (396)
                      +.+..
T Consensus       181 s~N~l  185 (312)
T 1wwl_A          181 SDNPE  185 (312)
T ss_dssp             CSCTT
T ss_pred             CCCCc
Confidence            65553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=9.7e-18  Score=150.36  Aligned_cols=204  Identities=21%  Similarity=0.165  Sum_probs=154.5

Q ss_pred             ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      .++++++++++++++++++.+|... .++++.|++++|.+..++...+..+++|++|++++| .++.++.. +.+++|++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred             cccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence            3667889999999999999887652 368999999999998776666899999999999999 77777654 78999999


Q ss_pred             EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcC
Q 044468           89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL  168 (396)
Q Consensus        89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  168 (396)
                      |++++|.++.+|..+..+++|++|++++| .+..++...+..+++|++|++.+|.+...             ....+..+
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l  147 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL-------------PPGLLTPT  147 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC-------------CTTTTTTC
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc-------------Chhhcccc
Confidence            99999999999988899999999999998 45566655589999999999999988763             33445566


Q ss_pred             CCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccc
Q 044468          169 KHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIR  248 (396)
Q Consensus       169 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~  248 (396)
                      ++|+.|+++.+....+                             ....+..+++|+.|+++.|.++.+.....      
T Consensus       148 ~~L~~L~L~~N~l~~l-----------------------------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~------  192 (290)
T 1p9a_G          148 PKLEKLSLANNNLTEL-----------------------------PAGLLNGLENLDTLLLQENSLYTIPKGFF------  192 (290)
T ss_dssp             TTCCEEECTTSCCSCC-----------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTT------
T ss_pred             cCCCEEECCCCcCCcc-----------------------------CHHHhcCcCCCCEEECCCCcCCccChhhc------
Confidence            6666666555443221                             11224556677777777776664433222      


Q ss_pred             cccccccCcEeEEeCceee
Q 044468          249 ETRGFHSLQKVYINYSKFR  267 (396)
Q Consensus       249 ~~~~~~~L~~L~l~~~~l~  267 (396)
                         ..++|+.+++.+|.+.
T Consensus       193 ---~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          193 ---GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ---TTCCCSEEECCSCCBC
T ss_pred             ---ccccCCeEEeCCCCcc
Confidence               4567888888877444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=1.7e-17  Score=147.39  Aligned_cols=200  Identities=23%  Similarity=0.277  Sum_probs=135.8

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEEccC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLDLSW   93 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~   93 (396)
                      +.++++++++.++.+|.. -.++++.|++++|.+..++...+..+++|++|++++| .++.++.. +.++++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence            467888888888887764 2257888899888888777655888888999999888 67766644 46788889999988


Q ss_pred             CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468           94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN  172 (396)
Q Consensus        94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  172 (396)
                      |.++.+|.. +..+++|++|++++|. ...++...++.+++|++|++++|.+...             ....+..+++|+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~  160 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSL-------------PKGVFDKLTSLK  160 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCcc-------------CHhHccCCcccc
Confidence            888877654 5778888888888874 4445544477888888888888877653             233355566666


Q ss_pred             EEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccc
Q 044468          173 LLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRG  252 (396)
Q Consensus       173 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~  252 (396)
                      .|++..+....++                             ...+..+++|++|+++.+.++.+......        .
T Consensus       161 ~L~L~~n~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~  203 (270)
T 2o6q_A          161 ELRLYNNQLKRVP-----------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFD--------S  203 (270)
T ss_dssp             EEECCSSCCSCCC-----------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTT--------T
T ss_pred             eeEecCCcCcEeC-----------------------------hhHhccCCCcCEEECCCCcCCcCCHHHhc--------c
Confidence            6665554432221                             11244556666666665555543322111        4


Q ss_pred             cccCcEeEEeCceee
Q 044468          253 FHSLQKVYINYSKFR  267 (396)
Q Consensus       253 ~~~L~~L~l~~~~l~  267 (396)
                      +++|+.|++.+|.+.
T Consensus       204 l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          204 LEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTCCEEECCSSCBC
T ss_pred             ccCCCEEEecCCCee
Confidence            667777777776433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=2.9e-19  Score=176.68  Aligned_cols=301  Identities=15%  Similarity=0.090  Sum_probs=161.1

Q ss_pred             CCccccEEEcccc-cccc--ccCC-CCCCCCcEEEccCCccCccCh----HHHhcCccccEEEeecCC-CCc--cccccc
Q 044468           12 MWKEITRMSLMQN-AIQN--LTET-PTCPHLRALFLHSNHLGTVSN----NFFHSMASLRVLIFLYNR-SLE--NLPLGI   80 (396)
Q Consensus        12 ~~~~L~~L~l~~~-~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~--~l~~~l   80 (396)
                      .+++|++|++.+| .+..  ++.. ..+++|+.|++++|.+.....    .+...+++|++|+++++. .+.  .++..+
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            4678888888877 4444  4444 567888888888876543221    113356688888888773 111  122223


Q ss_pred             cCCCcCCEEEccCC-CCCccchhhhcCCcccEEecccccC------------------------------CCCCCcchhc
Q 044468           81 LNLVSLQHLDLSWT-GITTLPIELKYLVNLKCLNLEYTFC------------------------------LSRIPQPVIS  129 (396)
Q Consensus        81 ~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~~~------------------------------~~~~~~~~i~  129 (396)
                      .++++|++|++++| .+..++..+.++++|++|+++.+..                              ...++. ++.
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~  286 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYS  286 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHH
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHH
Confidence            34677888888777 4445666666677777776544310                              001111 123


Q ss_pred             CCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecc---
Q 044468          130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRH---  206 (396)
Q Consensus       130 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~---  206 (396)
                      .+++|++|++.+|.+...            .....+..+++|+.|.+.++..  ...+..  ....+++|+.|++.+   
T Consensus       287 ~~~~L~~L~L~~~~l~~~------------~l~~~~~~~~~L~~L~l~~~~~--~~~l~~--l~~~~~~L~~L~L~~~~~  350 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSY------------DLVKLLCQCPKLQRLWVLDYIE--DAGLEV--LASTCKDLRELRVFPSEP  350 (594)
T ss_dssp             HHTTCCEEECTTCCCCHH------------HHHHHHTTCTTCCEEEEEGGGH--HHHHHH--HHHHCTTCCEEEEECSCT
T ss_pred             hhCCCCEEEccCCCCCHH------------HHHHHHhcCCCcCEEeCcCccC--HHHHHH--HHHhCCCCCEEEEecCcc
Confidence            567788888877775432            2333355677888888776521  111110  011245577777733   


Q ss_pred             -----cCCCcccchhhhh-ccccccceeeeccccceeeeccccccccccccccccCcEeEEe-----Cc-eeecCCc---
Q 044468          207 -----LNNSNLLSAFSFA-SLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYIN-----YS-KFRHATW---  271 (396)
Q Consensus       207 -----~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~-----~~-~l~~l~~---  271 (396)
                           +...+......+. .+++|++|.+.++.+.+........       .+++|++|++.     +| .+++.+.   
T Consensus       351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~  423 (594)
T 2p1m_B          351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-------NRPNMTRFRLCIIEPKAPDYLTLEPLDIG  423 (594)
T ss_dssp             TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-------HCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred             cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-------hCCCcceeEeecccCCCcccccCCchhhH
Confidence                 2333333333333 3677777766666655433221111       35566666665     23 3332111   


Q ss_pred             ----cCC------------------------CCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468          272 ----LVL------------------------APRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL  323 (396)
Q Consensus       272 ----l~~------------------------l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  323 (396)
                          +..                        +++|++|++++|. +++.           +.......+++|+.|++++|
T Consensus       424 ~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~-----------~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL-----------GMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHH-----------HHHHHHHHCTTCCEEEEESC
T ss_pred             HHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHH-----------HHHHHHhcCCCcCEEECcCC
Confidence                222                        4445555554443 1111           11111245788888888888


Q ss_pred             ccccccc--CCCCCCCCcceEEeccCcc
Q 044468          324 QNLKSIH--SSYLPFPRLKEICVWKCAE  349 (396)
Q Consensus       324 ~~l~~~~--~~~~~~~~L~~L~i~~c~~  349 (396)
                      +. ....  .....+++|+.|++++|+.
T Consensus       492 ~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          492 PF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             SC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            64 3221  1234578899999988864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=4.6e-18  Score=148.21  Aligned_cols=208  Identities=19%  Similarity=0.187  Sum_probs=123.3

Q ss_pred             ccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccC-CCCCccc
Q 044468           23 QNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSW-TGITTLP  100 (396)
Q Consensus        23 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~-~~l~~l~  100 (396)
                      ...++.+|.  -.++|+.|++++|.+..++...+..+++|++|++++|..++.++. .+.++++|++|++++ |.++.++
T Consensus        20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            333555555  334777778877777777665577777788888877732665553 566777777777777 6777665


Q ss_pred             h-hhhcCCcccEEecccccCCCCCCcchhcCCCccc---EEEeecc-CccchhccchhccCCchhhhHhhhcCCCCc-EE
Q 044468          101 I-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLR---ALRMFEC-GFKVEQEADRILFGDSEVLVEELLALKHLN-LL  174 (396)
Q Consensus       101 ~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L  174 (396)
                      . .+.++++|++|++++|. ...+|.  ++.+++|+   +|++.+| .+...             ....+.++++|+ .+
T Consensus        98 ~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i-------------~~~~~~~l~~L~~~L  161 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSI-------------PVNAFQGLCNETLTL  161 (239)
T ss_dssp             TTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEE-------------CTTTTTTTBSSEEEE
T ss_pred             HHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhc-------------CcccccchhcceeEE
Confidence            4 46677777777777763 334554  56666666   7777777 55542             223345555555 55


Q ss_pred             EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc-ccceeeecccccccccccccc
Q 044468          175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN-DFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      +++.+....++.                             ..+.. ++|++|+++.+ .++.+......        .+
T Consensus       162 ~l~~n~l~~i~~-----------------------------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~--------~l  203 (239)
T 2xwt_C          162 KLYNNGFTSVQG-----------------------------YAFNG-TKLDAVYLNKNKYLTVIDKDAFG--------GV  203 (239)
T ss_dssp             ECCSCCCCEECT-----------------------------TTTTT-CEEEEEECTTCTTCCEECTTTTT--------TC
T ss_pred             EcCCCCCcccCH-----------------------------hhcCC-CCCCEEEcCCCCCcccCCHHHhh--------cc
Confidence            555444322211                             11222 45555666544 25544332221        45


Q ss_pred             -ccCcEeEEeCceeecCCccCCCCCccEEeecccc
Q 044468          254 -HSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQ  287 (396)
Q Consensus       254 -~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~  287 (396)
                       ++|++|++++|.++.++.. .+++|+.|+++++.
T Consensus       204 ~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          204 YSGPSLLDVSQTSVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             SBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred             ccCCcEEECCCCccccCChh-HhccCceeeccCcc
Confidence             6677777777766665543 56777777776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=5e-18  Score=163.38  Aligned_cols=233  Identities=15%  Similarity=0.094  Sum_probs=182.6

Q ss_pred             CCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEE
Q 044468           12 MWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHL   89 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L   89 (396)
                      .+++|++|++++|.+..++. . ..+++|++|++++|.+...++  +..+++|++|++++| .++.+|.    .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence            45589999999999999653 4 899999999999999976655  889999999999999 7766653    3899999


Q ss_pred             EccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh-cC
Q 044468           90 DLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL-AL  168 (396)
Q Consensus        90 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l  168 (396)
                      ++++|.++.++.  ..+++|++|++++|.+....|.. ++.+++|++|++++|.+.+.             .+..+. .+
T Consensus       105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~-------------~~~~l~~~l  168 (487)
T 3oja_A          105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV-------------NFAELAASS  168 (487)
T ss_dssp             ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE-------------EGGGGGGGT
T ss_pred             ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc-------------ChHHHhhhC
Confidence            999999997765  35789999999999655544544 88999999999999998874             444554 78


Q ss_pred             CCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccc
Q 044468          169 KHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIR  248 (396)
Q Consensus       169 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~  248 (396)
                      +.|+.|+++.+.+...+.      ...+++|+.|+++++.- ..... .+..+++|+.|+++.|.+..+....       
T Consensus       169 ~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~Ls~N~l-~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l-------  233 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKL-AFMGP-EFQSAAGVTWISLRNNKLVLIEKAL-------  233 (487)
T ss_dssp             TTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCC-CEECG-GGGGGTTCSEEECTTSCCCEECTTC-------
T ss_pred             CcccEEecCCCccccccc------cccCCCCCEEECCCCCC-CCCCH-hHcCCCCccEEEecCCcCcccchhh-------
Confidence            999999999998766532      33567799999998643 33322 3778899999999999888654322       


Q ss_pred             cccccccCcEeEEeCceee--cC-CccCCCCCccEEeec
Q 044468          249 ETRGFHSLQKVYINYSKFR--HA-TWLVLAPRAKVIRIS  284 (396)
Q Consensus       249 ~~~~~~~L~~L~l~~~~l~--~l-~~l~~l~~L~~L~l~  284 (396)
                        +.+++|+.|++.+|.+.  .+ .++..++.|+.+++.
T Consensus       234 --~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          234 --RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             --CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             --ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence              26799999999999666  23 235567777777664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=5.3e-17  Score=144.15  Aligned_cols=185  Identities=24%  Similarity=0.344  Sum_probs=146.3

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-cc
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LG   79 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~   79 (396)
                      +++.+|. .-.+++++|++++|.+..++..  ..+++|++|++++|.+..++...+..+++|++|++++| .+..+| ..
T Consensus        27 ~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~  104 (270)
T 2o6q_A           27 KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGV  104 (270)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhH
Confidence            4556653 1235799999999999997753  88999999999999999998886789999999999999 777666 45


Q ss_pred             ccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCc
Q 044468           80 ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDS  158 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  158 (396)
                      +.++++|++|++++|.++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+...           
T Consensus       105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------  172 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRV-----------  172 (270)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------
T ss_pred             cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEe-----------
Confidence            68899999999999999977654 789999999999998 55566766588999999999999988764           


Q ss_pred             hhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468          159 EVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL  207 (396)
Q Consensus       159 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  207 (396)
                        ....+.++++|+.|++..+....++.    ..+..+++|+.|++.++
T Consensus       173 --~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          173 --PEGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSS
T ss_pred             --ChhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCC
Confidence              34457778888988888776654332    12344555666666553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=3.9e-18  Score=156.43  Aligned_cols=126  Identities=20%  Similarity=0.155  Sum_probs=88.8

Q ss_pred             CCcEEEccCCccCccChHHHhcC--ccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCc--cchhhhcCCcccEE
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSM--ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITT--LPIELKYLVNLKCL  112 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L  112 (396)
                      .++.++++++.+.   +..+..+  +++++|+++++ .+...+..+..+++|++|++++|.++.  ++..+.++++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4778888887665   2335666  78888888888 555555556678888888888887762  67778888888888


Q ss_pred             ecccccCCCCCCcchhcCCCcccEEEeecc-CccchhccchhccCCchhhhHhhhcCCCCcEEEEEec
Q 044468          113 NLEYTFCLSRIPQPVISDLKMLRALRMFEC-GFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ  179 (396)
Q Consensus       113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  179 (396)
                      ++++|......+.. ++.+++|++|++.+| .++..            .....+.++++|+.|++.++
T Consensus       124 ~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~------------~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          124 SLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF------------ALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH------------HHHHHHHHCTTCCEEECCCC
T ss_pred             eCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH------------HHHHHHhcCCCCCEEcCCCC
Confidence            88888544445554 777888888888888 45431            23444666777777766655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=5e-17  Score=149.89  Aligned_cols=238  Identities=13%  Similarity=0.074  Sum_probs=174.6

Q ss_pred             cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCE-EEccCC
Q 044468           17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQH-LDLSWT   94 (396)
Q Consensus        17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~-L~l~~~   94 (396)
                      ++++.++++++.+|..- .++++.|++++|.+..++.++|..+++|++|++++|...+.+|. .+.++++|++ +.+.++
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            67788888888887641 35789999999999988887688999999999999944455653 5678888776 455667


Q ss_pred             CCCccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc-CccchhccchhccCCchhhhHhhhcC-CCC
Q 044468           95 GITTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC-GFKVEQEADRILFGDSEVLVEELLAL-KHL  171 (396)
Q Consensus        95 ~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L  171 (396)
                      .++.++ ..+.++++|++|++++|. +..++...+....++..+++.++ .+...             ....+..+ ..+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l-------------~~~~f~~~~~~l  156 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTI-------------ERNSFVGLSFES  156 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEE-------------CTTSSTTSBSSC
T ss_pred             cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccc-------------cccchhhcchhh
Confidence            888775 457889999999999884 44555433555667778887654 33332             22334444 357


Q ss_pred             cEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccc
Q 044468          172 NLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETR  251 (396)
Q Consensus       172 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~  251 (396)
                      +.|++..+.+..++.     ......+|+.+.+.++..........+..+++|+.|+++.|.++.+.          .. 
T Consensus       157 ~~L~L~~N~i~~i~~-----~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp----------~~-  220 (350)
T 4ay9_X          157 VILWLNKNGIQEIHN-----SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP----------SY-  220 (350)
T ss_dssp             EEEECCSSCCCEECT-----TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC----------SS-
T ss_pred             hhhccccccccCCCh-----hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC----------hh-
Confidence            788888887765542     22234568889988766666666556788999999999988887543          22 


Q ss_pred             ccccCcEeEEeCc-eeecCCccCCCCCccEEeecc
Q 044468          252 GFHSLQKVYINYS-KFRHATWLVLAPRAKVIRISN  285 (396)
Q Consensus       252 ~~~~L~~L~l~~~-~l~~l~~l~~l~~L~~L~l~~  285 (396)
                      .+.+|++|.+.++ .++.+|.+..+++|+.+++.+
T Consensus       221 ~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          221 GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            6889999998888 899999999999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=1e-16  Score=147.87  Aligned_cols=104  Identities=15%  Similarity=0.241  Sum_probs=69.9

Q ss_pred             cEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCCCCC-ccchh-hhcCCcccEEecc
Q 044468           39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWTGIT-TLPIE-LKYLVNLKCLNLE  115 (396)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~l~-~l~~~-l~~l~~L~~L~l~  115 (396)
                      ++++++++.+.++|.+ +  .+++++|++++| .++.+|. .+.++++|++|++++|.+. .+|.. +.++++++++...
T Consensus        12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTT-C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcC-c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            5677777777777765 3  357788888888 7777764 4677888888888888764 45543 5667776654443


Q ss_pred             cccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468          116 YTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus       116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      +++.+..++...+..+++|++|++.+|.+..
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             cCCcccccCchhhhhcccccccccccccccc
Confidence            3335555555447777788888877776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=9.3e-17  Score=142.71  Aligned_cols=164  Identities=23%  Similarity=0.375  Sum_probs=138.2

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-ccc
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GIL   81 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~   81 (396)
                      ++..++.+..+++|++|++++|.+..++....+++|++|++++|.+..++...+..+++|++|++++| .+..++. .++
T Consensus        52 ~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  130 (272)
T 3rfs_A           52 DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFD  130 (272)
T ss_dssp             CCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred             CcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhc
Confidence            45667788899999999999999998875589999999999999998888776899999999999999 6766654 478


Q ss_pred             CCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchh
Q 044468           82 NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEV  160 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  160 (396)
                      ++++|++|++++|.++.++.. +.++++|++|++++|. ...++...++.+++|++|++.+|.+.+.             
T Consensus       131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------  196 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSV-------------  196 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC-------------
T ss_pred             cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCcc-------------
Confidence            999999999999999987765 6889999999999985 4456655578999999999999998874             


Q ss_pred             hhHhhhcCCCCcEEEEEeccc
Q 044468          161 LVEELLALKHLNLLTVTLQIF  181 (396)
Q Consensus       161 ~~~~l~~l~~L~~L~l~~~~~  181 (396)
                      ....+..+++|+.|++.++..
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCB
T ss_pred             CHHHHhCCcCCCEEEccCCCc
Confidence            344567778888888776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=6.5e-18  Score=154.96  Aligned_cols=219  Identities=16%  Similarity=0.051  Sum_probs=140.2

Q ss_pred             ccEEEccccccccccCC-CCC--CCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc-c-ccccccCCCcCCEEE
Q 044468           16 ITRMSLMQNAIQNLTET-PTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE-N-LPLGILNLVSLQHLD   90 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~-~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~-l~~~l~~l~~L~~L~   90 (396)
                      +++++++++.+..  .. ..+  ++++.|++.++.+...+.. +..+++|++|++++| .+. . ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEe
Confidence            6677777776553  11 233  6778888888777655444 556788888888887 444 2 556667778888888


Q ss_pred             ccCCCCC-ccchhhhcCCcccEEecccccCCCC--CCcchhcCCCcccEEEeecc-CccchhccchhccCCchhhhHhhh
Q 044468           91 LSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSR--IPQPVISDLKMLRALRMFEC-GFKVEQEADRILFGDSEVLVEELL  166 (396)
Q Consensus        91 l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~  166 (396)
                      +++|.++ ..+..+..+++|++|++++|.....  ++.. +..+++|++|++.+| .++..            .....+.
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------------~~~~~~~  191 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------------HVQVAVA  191 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------------HHHHHHH
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------------HHHHHHH
Confidence            8888776 5566677788888888887733332  3332 667788888888887 66542            2455567


Q ss_pred             cCC-CCcEEEEEeccc----chhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc-ccceeeec
Q 044468          167 ALK-HLNLLTVTLQIF----GALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN-DFEELNID  240 (396)
Q Consensus       167 ~l~-~L~~L~l~~~~~----~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~l~~~  240 (396)
                      .++ +|+.|++.++..    ..++.     .+.++++|+.|+++++...+......+..+++|++|+++.+ .+.+..+.
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  266 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLST-----LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL  266 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHH-----HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHH-----HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence            777 888888777642    12221     12335568888887776555444445677788888888743 33322221


Q ss_pred             cccccccccccccccCcEeEEeCc
Q 044468          241 AGEVKRIRETRGFHSLQKVYINYS  264 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~L~~L~l~~~  264 (396)
                      ..        +.+++|++|++.+|
T Consensus       267 ~l--------~~~~~L~~L~l~~~  282 (336)
T 2ast_B          267 EL--------GEIPTLKTLQVFGI  282 (336)
T ss_dssp             GG--------GGCTTCCEEECTTS
T ss_pred             HH--------hcCCCCCEEeccCc
Confidence            11        16788888888887

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=1.3e-16  Score=142.95  Aligned_cols=183  Identities=23%  Similarity=0.221  Sum_probs=148.3

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG   79 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~   79 (396)
                      .+++.+|. .-.++++.|++++|.+..++. . ..+++|+.|++++|.+..++.  ...+++|++|++++| .++.+|..
T Consensus        20 ~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~   95 (290)
T 1p9a_G           20 RNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-QLQSLPLL   95 (290)
T ss_dssp             SCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-CCSSCCCC
T ss_pred             CCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-cCCcCchh
Confidence            35566653 123689999999999998643 3 889999999999999988776  478999999999999 88899988


Q ss_pred             ccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCc
Q 044468           80 ILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDS  158 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  158 (396)
                      +..+++|++|++++|.++.+|. .+.++++|++|++++| .+..++..++..+++|+.|++.+|.+...           
T Consensus        96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----------  163 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL-----------  163 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC-----------
T ss_pred             hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCcc-----------
Confidence            8999999999999999998874 5889999999999998 55567766688999999999999998874           


Q ss_pred             hhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468          159 EVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL  207 (396)
Q Consensus       159 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  207 (396)
                        ....+..+++|+.|++..+....++.     .+...++|+.+++.++
T Consensus       164 --~~~~~~~l~~L~~L~L~~N~l~~ip~-----~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          164 --PAGLLNGLENLDTLLLQENSLYTIPK-----GFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCCCSEEECCSC
T ss_pred             --CHHHhcCcCCCCEEECCCCcCCccCh-----hhcccccCCeEEeCCC
Confidence              34556788999999998888765542     2333445777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=1.5e-18  Score=162.38  Aligned_cols=239  Identities=14%  Similarity=0.070  Sum_probs=122.8

Q ss_pred             CCCCCCcEEEccCCccCccChH----HHhcCccccEEEeecCCCCc----cccccc-------cCCCcCCEEEccCCCCC
Q 044468           33 PTCPHLRALFLHSNHLGTVSNN----FFHSMASLRVLIFLYNRSLE----NLPLGI-------LNLVSLQHLDLSWTGIT   97 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~----~l~~~l-------~~l~~L~~L~l~~~~l~   97 (396)
                      ..+++|+.|++++|.+......    .+..+++|++|++++| .+.    .+|..+       ..+++|++|++++|.++
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            5566777777777766432111    1446677777777765 322    223332       46677777777777666


Q ss_pred             c-----cchhhhcCCcccEEecccccCCCCCCcc---hhcCC---------CcccEEEeeccCccchhccchhccCCchh
Q 044468           98 T-----LPIELKYLVNLKCLNLEYTFCLSRIPQP---VISDL---------KMLRALRMFECGFKVEQEADRILFGDSEV  160 (396)
Q Consensus        98 ~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~---~i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  160 (396)
                      .     +|..+.++++|++|++++|.+....+..   .+..+         ++|++|++++|.+...         ....
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---------~~~~  178 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---------SMKE  178 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------GHHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------HHHH
Confidence            4     5556667777777777776432211111   02222         6777777777766531         0112


Q ss_pred             hhHhhhcCCCCcEEEEEecccchhhhhhhcc-CCCCCcccceEEecccCCCccc----chhhhhccccccceeeeccccc
Q 044468          161 LVEELLALKHLNLLTVTLQIFGALQRLLNYC-NSSRSINTQSLCLRHLNNSNLL----SAFSFASLRHLWTLHLYFNDFE  235 (396)
Q Consensus       161 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~  235 (396)
                      ....+..+++|+.|++..+............ .+.++++|+.|+++++. ....    ....+..+++|++|+++.|.+.
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence            2245566667777776666554211101111 34445556666666543 2110    1112445566666666655554


Q ss_pred             eeeeccccccccccc---cccccCcEeEEeCceeec-----CCc-c-CCCCCccEEeecccc
Q 044468          236 ELNIDAGEVKRIRET---RGFHSLQKVYINYSKFRH-----ATW-L-VLAPRAKVIRISNCQ  287 (396)
Q Consensus       236 ~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~-----l~~-l-~~l~~L~~L~l~~~~  287 (396)
                      +.+...     ++..   +.+++|++|++++|.++.     ++. + ..+++|++|++++|.
T Consensus       258 ~~~~~~-----l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          258 ARGAAA-----VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHH-----HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhhHHH-----HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            432111     1110   025666666666665554     322 2 335666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=5.6e-17  Score=141.28  Aligned_cols=204  Identities=13%  Similarity=0.226  Sum_probs=153.7

Q ss_pred             CCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCc-cCccChHHHhcCccccEEEeec-CCCCcccc-c
Q 044468            4 LTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNH-LGTVSNNFFHSMASLRVLIFLY-NRSLENLP-L   78 (396)
Q Consensus         4 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~l~-~   78 (396)
                      ++.+|.  -.+++++|++++|.++.++..  ..+++|+.|++++|. +..++...+..+++|++|++++ | .++.++ .
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD   99 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence            556666  234899999999999997764  789999999999997 8888876689999999999998 7 777776 4


Q ss_pred             cccCCCcCCEEEccCCCCCccchhhhcCCccc---EEecccccCCCCCCcchhcCCCccc-EEEeeccCccchhccchhc
Q 044468           79 GILNLVSLQHLDLSWTGITTLPIELKYLVNLK---CLNLEYTFCLSRIPQPVISDLKMLR-ALRMFECGFKVEQEADRIL  154 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~---~L~l~~~~~~~~~~~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~  154 (396)
                      .+.++++|++|++++|.++.+|. +..+++|+   +|++++|.....++...+..+++|+ +|++.+|.+...       
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-------  171 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-------  171 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-------
T ss_pred             HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-------
Confidence            67899999999999999999887 77888888   9999998456666665588999999 999999987753       


Q ss_pred             cCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcc-ccccceeeeccc
Q 044468          155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASL-RHLWTLHLYFND  233 (396)
Q Consensus       155 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~  233 (396)
                            ....+.. ++                            |+.|++.++..........+..+ ++|+.|+++.+.
T Consensus       172 ------~~~~~~~-~~----------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          172 ------QGYAFNG-TK----------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             ------CTTTTTT-CE----------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             ------CHhhcCC-CC----------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence                  1122222 33                            44444544322233222335666 788888888777


Q ss_pred             cceeeeccccccccccccccccCcEeEEeCc
Q 044468          234 FEELNIDAGEVKRIRETRGFHSLQKVYINYS  264 (396)
Q Consensus       234 i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  264 (396)
                      ++.+.          .. .+++|++|++.++
T Consensus       217 l~~l~----------~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          217 VTALP----------SK-GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCC----------CT-TCTTCSEEECTTC
T ss_pred             cccCC----------hh-HhccCceeeccCc
Confidence            76432          22 5788888888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=5.1e-18  Score=158.76  Aligned_cols=261  Identities=16%  Similarity=0.145  Sum_probs=180.5

Q ss_pred             ccCCCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccC----ccChHH------HhcCccccEEEeecCCC
Q 044468            9 RIGMWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLG----TVSNNF------FHSMASLRVLIFLYNRS   72 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~----~~~~~~------~~~l~~L~~L~l~~~~~   72 (396)
                      .+..+++|++|++++|.+..     ++.. ..+++|++|++++|.+.    .+|.++      +..+++|++|++++| .
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~  105 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A  105 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-c
Confidence            45667899999999998876     3333 68999999999998554    344442      478999999999999 5


Q ss_pred             Ccc-----ccccccCCCcCCEEEccCCCCC-----ccchhhhcC---------CcccEEecccccCC-CCCCc--chhcC
Q 044468           73 LEN-----LPLGILNLVSLQHLDLSWTGIT-----TLPIELKYL---------VNLKCLNLEYTFCL-SRIPQ--PVISD  130 (396)
Q Consensus        73 ~~~-----l~~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l---------~~L~~L~l~~~~~~-~~~~~--~~i~~  130 (396)
                      ++.     +|..+..+++|++|++++|.++     .++..+..+         ++|++|++++|... ..++.  ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            654     6677889999999999999886     233344455         89999999998654 23331  22678


Q ss_pred             CCcccEEEeeccCccchhccchhccCCchhhhH-hhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCC
Q 044468          131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVE-ELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNN  209 (396)
Q Consensus       131 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  209 (396)
                      +++|++|++.+|.+...         +...... .+..+++|+.|+++.+.........-...+.++++|+.|+++++.-
T Consensus       186 ~~~L~~L~L~~n~l~~~---------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPE---------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             CTTCCEEECCSSCCCHH---------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             CCCcCEEECcCCCCCHh---------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            89999999999988742         0011334 7788999999999998874321111112345677799999998753


Q ss_pred             Ccccch----hhhh--ccccccceeeeccccceeeeccccccccccc--cccccCcEeEEeCceeecCCc----c-CCCC
Q 044468          210 SNLLSA----FSFA--SLRHLWTLHLYFNDFEELNIDAGEVKRIRET--RGFHSLQKVYINYSKFRHATW----L-VLAP  276 (396)
Q Consensus       210 ~~~~~~----~~l~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~l~~----l-~~l~  276 (396)
                       .....    ..+.  .+++|++|+++.|.+.+.+..     .+|..  ..+++|++|++.+|.++....    + ..++
T Consensus       257 -~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~-----~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  330 (386)
T 2ca6_A          257 -SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR-----TLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS  330 (386)
T ss_dssp             -CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH-----HHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred             -chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH-----HHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence             33211    2232  279999999998888753211     12221  157999999999997776442    1 1245


Q ss_pred             CccEEeecc
Q 044468          277 RAKVIRISN  285 (396)
Q Consensus       277 ~L~~L~l~~  285 (396)
                      .++.+++..
T Consensus       331 ~~~~~~l~~  339 (386)
T 2ca6_A          331 TRGRGELDE  339 (386)
T ss_dssp             HHTCCEECC
T ss_pred             hcCcchhhh
Confidence            555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.70  E-value=1.2e-18  Score=172.30  Aligned_cols=263  Identities=14%  Similarity=0.111  Sum_probs=116.5

Q ss_pred             CccccEEEcccccccc--ccCC-CCCCCCcEEEccCC-ccCc--cChHHHhcCccccEEEeecCCCCcc-----cccccc
Q 044468           13 WKEITRMSLMQNAIQN--LTET-PTCPHLRALFLHSN-HLGT--VSNNFFHSMASLRVLIFLYNRSLEN-----LPLGIL   81 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~-~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~l~   81 (396)
                      +++|++|+++++.+..  +... ..+++|+.|++.+| .+..  ++. ++..+++|++|++++| .++.     ++....
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRES-DVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTC-EEECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCC-ccCCcchHHHHHHhh
Confidence            4455555555555443  1111 24555555555555 3322  222 1345555666666555 2221     111122


Q ss_pred             CCCcCCEEEccCCC--CC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCc-------cchhcc
Q 044468           82 NLVSLQHLDLSWTG--IT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF-------KVEQEA  150 (396)
Q Consensus        82 ~l~~L~~L~l~~~~--l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~-------~~~~~~  150 (396)
                      .+++|++|++++|.  ++  .++....++++|++|++.+|.....++.. +..+++|++|++..+..       ......
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHH
Confidence            44556666665553  22  12222334556666666555322223332 44555566655443321       000000


Q ss_pred             ---------c-hhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhh-h
Q 044468          151 ---------D-RILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSF-A  219 (396)
Q Consensus       151 ---------~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~  219 (396)
                               . ++...........+..+++|+.|++..+...... +.  ..+.++++|+.|++.++  ........+ .
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-l~--~~~~~~~~L~~L~l~~~--~~~~~l~~l~~  335 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD-LV--KLLCQCPKLQRLWVLDY--IEDAGLEVLAS  335 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH-HH--HHHTTCTTCCEEEEEGG--GHHHHHHHHHH
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH-HH--HHHhcCCCcCEEeCcCc--cCHHHHHHHHH
Confidence                     0 0000001111122224455665555554422111 10  11234555666766655  222222222 2


Q ss_pred             ccccccceeee---------ccccceeeeccccccccccccccccCcEeEEeCceeec--CCccC-CCCCccEEeec---
Q 044468          220 SLRHLWTLHLY---------FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH--ATWLV-LAPRAKVIRIS---  284 (396)
Q Consensus       220 ~~~~L~~L~l~---------~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~l~-~l~~L~~L~l~---  284 (396)
                      .+++|++|++.         ++.+.+..+....       ..+++|++|.+..+.+++  +..+. .+++|++|+++   
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~-------~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS-------MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH-------HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHH-------HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            46667777663         2333322211110       147888998665556665  23333 48999999998   


Q ss_pred             --cccccc
Q 044468          285 --NCQRLQ  290 (396)
Q Consensus       285 --~~~~l~  290 (396)
                        +|..++
T Consensus       409 ~~~~~~l~  416 (594)
T 2p1m_B          409 PKAPDYLT  416 (594)
T ss_dssp             TTCCCTTT
T ss_pred             CCCccccc
Confidence              455555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=2.5e-16  Score=141.24  Aligned_cols=130  Identities=22%  Similarity=0.305  Sum_probs=75.0

Q ss_pred             ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      .+..+++|++|++++|.+..++....+++|+.|++++|.+..++.  +..+++|++|++++| .++.++. +..+++|++
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence            344455666666666666655444556666666666666655544  556666666666666 4554433 556666666


Q ss_pred             EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      |++++|.++.++ .+..+++|++|++++|. ...++ . +..+++|++|++++|.+..
T Consensus       117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          117 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCCC
T ss_pred             EECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCcccc
Confidence            666666665553 35556666666666653 33332 2 5566666666666665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=3e-16  Score=132.35  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=125.3

Q ss_pred             cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc-cccccccCCCcCCE
Q 044468           10 IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE-NLPLGILNLVSLQH   88 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~   88 (396)
                      .+.+++|++|++++|.+..++....+++|+.|++++|.+..++.  +..+++|++|++++| .++ ..+..++.+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence            35678899999999999888855889999999999997776653  888999999999999 555 46777889999999


Q ss_pred             EEccCCCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468           89 LDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA  167 (396)
Q Consensus        89 L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (396)
                      |++++|.++ ..+..+..+++|++|++++|.....++.  +..+++|++|++.+|.+...               ..+..
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~---------------~~l~~  179 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY---------------RGIED  179 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC---------------TTGGG
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh---------------HHhcc
Confidence            999999888 4677788999999999999865677763  88999999999999988753               26778


Q ss_pred             CCCCcEEEEEecccc
Q 044468          168 LKHLNLLTVTLQIFG  182 (396)
Q Consensus       168 l~~L~~L~l~~~~~~  182 (396)
                      +++|+.|++.++...
T Consensus       180 l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          180 FPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSCCEEEECBC---
T ss_pred             CCCCCEEEeeCcccC
Confidence            888998888877653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=5.2e-17  Score=147.22  Aligned_cols=228  Identities=14%  Similarity=0.061  Sum_probs=137.8

Q ss_pred             CCCcEEEccCCccCc--cChH-HHhcCccccEEEeecCCCCccccccc--cCCCcCCEEEccCCCCCc-cc----hhhhc
Q 044468           36 PHLRALFLHSNHLGT--VSNN-FFHSMASLRVLIFLYNRSLENLPLGI--LNLVSLQHLDLSWTGITT-LP----IELKY  105 (396)
Q Consensus        36 ~~L~~L~l~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l--~~l~~L~~L~l~~~~l~~-l~----~~l~~  105 (396)
                      ..++.+.+.++.+..  +... .+..+++|++|++++|...+..|..+  ..+++|++|++++|.++. .+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            356778888876642  1110 12345679999999994444666666  889999999999998874 22    23467


Q ss_pred             CCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh--hHhhhcCCCCcEEEEEecccch
Q 044468          106 LVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL--VEELLALKHLNLLTVTLQIFGA  183 (396)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~  183 (396)
                      +++|++|++++|.. ..++...++.+++|++|++++|.+.+.           ...  ...+..+++|+.|+++.+....
T Consensus       144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l~~  211 (310)
T 4glp_A          144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGE-----------RGLMAALCPHKFPAIQNLALRNTGMET  211 (310)
T ss_dssp             CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHH-----------HHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred             ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccc-----------hhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence            99999999999855 444443488999999999999987642           011  1233678888888888887754


Q ss_pred             hhhhhhccCCCCCcccceEEecccCCCcc--cchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEE
Q 044468          184 LQRLLNYCNSSRSINTQSLCLRHLNNSNL--LSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYI  261 (396)
Q Consensus       184 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l  261 (396)
                      ++..... .+.++++|+.|+++++.-...  .....+..+++|++|+++.|.++.+.          .. .+++|++|++
T Consensus       212 l~~~~~~-l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp----------~~-~~~~L~~L~L  279 (310)
T 4glp_A          212 PTGVCAA-LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP----------KG-LPAKLRVLDL  279 (310)
T ss_dssp             HHHHHHH-HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC----------SC-CCSCCSCEEC
T ss_pred             hHHHHHH-HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh----------hh-hcCCCCEEEC
Confidence            4432110 012233466666665432111  11111112246666666655555321          11 2356666666


Q ss_pred             eCceeecCCccCCCCCccEEeecccc
Q 044468          262 NYSKFRHATWLVLAPRAKVIRISNCQ  287 (396)
Q Consensus       262 ~~~~l~~l~~l~~l~~L~~L~l~~~~  287 (396)
                      ++|.++.++.+..+++|++|++++++
T Consensus       280 s~N~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          280 SSNRLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred             CCCcCCCCchhhhCCCccEEECcCCC
Confidence            66655555555555666666665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.68  E-value=7.3e-16  Score=135.23  Aligned_cols=175  Identities=21%  Similarity=0.230  Sum_probs=114.6

Q ss_pred             ccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEcc
Q 044468           14 KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLS   92 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~   92 (396)
                      .+.++++++++.+..+|..- .++++.|++++|.+..++...+..+++|++|++++| .+..++ ..+.++++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence            34567777777777766541 256777777777776665554677777777777777 555443 446677777777777


Q ss_pred             CCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC
Q 044468           93 WTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL  171 (396)
Q Consensus        93 ~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  171 (396)
                      +|.++.++. .+..+++|++|++++| .+..++...+..+++|++|++.+|.+...             ....+..+++|
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L  157 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSI-------------PAGAFDKLTNL  157 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCcc-------------CHHHcCcCcCC
Confidence            777776654 3567777777777776 34455554466777777777777776653             33456667777


Q ss_pred             cEEEEEecccchhhhhhhccCCCCCcccceEEecccC
Q 044468          172 NLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN  208 (396)
Q Consensus       172 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  208 (396)
                      +.|++..+....++.    ..+.++++|+.|++.++.
T Consensus       158 ~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          158 QTLSLSTNQLQSVPH----GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCC
T ss_pred             CEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCc
Confidence            777777776665542    234455567777776643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=8.6e-17  Score=149.04  Aligned_cols=254  Identities=18%  Similarity=0.162  Sum_probs=135.6

Q ss_pred             EEcccccccc-ccCC-CCCCCCcEEEccCCccCccCh----HHHhcCc-cccEEEeecCCCCccc-cccccCC-----Cc
Q 044468           19 MSLMQNAIQN-LTET-PTCPHLRALFLHSNHLGTVSN----NFFHSMA-SLRVLIFLYNRSLENL-PLGILNL-----VS   85 (396)
Q Consensus        19 L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~l-~~~l~~l-----~~   85 (396)
                      +.++.+.+.. ++.. ...++|+.|++++|.+...+.    ..+..++ +|++|++++| .++.. +..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence            4566666665 4444 455568888888887766654    4466777 7888888888 55533 3344433     77


Q ss_pred             CCEEEccCCCCCccc-hh----hhcC-CcccEEecccccCCCCCCcc---hhcC-CCcccEEEeeccCccchhccchhcc
Q 044468           86 LQHLDLSWTGITTLP-IE----LKYL-VNLKCLNLEYTFCLSRIPQP---VISD-LKMLRALRMFECGFKVEQEADRILF  155 (396)
Q Consensus        86 L~~L~l~~~~l~~l~-~~----l~~l-~~L~~L~l~~~~~~~~~~~~---~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~  155 (396)
                      |++|++++|.++..+ ..    +..+ ++|++|++++|......+..   .+.. .++|++|++++|.+...        
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------  153 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--------  153 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--------
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--------
Confidence            888888888776333 22    3344 77888888887543332222   1223 35788888888776642        


Q ss_pred             CCchhhhHhhhcCC-CCcEEEEEecccchhhhhhhccCCCCC-cccceEEecccCCCcccchh----hhhc-ccccccee
Q 044468          156 GDSEVLVEELLALK-HLNLLTVTLQIFGALQRLLNYCNSSRS-INTQSLCLRHLNNSNLLSAF----SFAS-LRHLWTLH  228 (396)
Q Consensus       156 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~----~l~~-~~~L~~L~  228 (396)
                       ........+...+ +|+.|+++.+.............+..+ ++|+.|+++++. .......    .+.. .++|++|+
T Consensus       154 -~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~  231 (362)
T 3goz_A          154 -SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLN  231 (362)
T ss_dssp             -CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred             -HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEE
Confidence             1112334445554 677777766655432211111112222 246666666543 2221111    1222 34666666


Q ss_pred             eeccccceeeeccccccccccccccccCcEeEEeCceeecCC---------ccCCCCCccEEeecccc
Q 044468          229 LYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT---------WLVLAPRAKVIRISNCQ  287 (396)
Q Consensus       229 l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~---------~l~~l~~L~~L~l~~~~  287 (396)
                      ++.|.+.+.+...... .+   ..+++|++|++++|.+..+.         .+..+++|++|+++++.
T Consensus       232 Ls~N~l~~~~~~~l~~-~~---~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          232 LCLNCLHGPSLENLKL-LK---DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CCSSCCCCCCHHHHHH-TT---TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             CcCCCCCcHHHHHHHH-HH---hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            6666665543311100 00   14566666666666433221         23445566666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=1.1e-15  Score=134.11  Aligned_cols=166  Identities=24%  Similarity=0.303  Sum_probs=127.9

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~   78 (396)
                      .++..+|. .-.+++++|++++|.+..++..  ..+++|++|++++|.+..++...+..+++|++|++++| .++.++ .
T Consensus        24 ~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~  101 (251)
T 3m19_A           24 KSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLG  101 (251)
T ss_dssp             CCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTT
T ss_pred             CCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChh
Confidence            34555653 1235788999999988886543  78889999999999888777666788899999999998 666665 4


Q ss_pred             cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           79 GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .+..+++|++|++++|.++.++.. +.++++|++|++++| .+..++...++.+++|++|++.+|.+...          
T Consensus       102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------  170 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV----------  170 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC----------
T ss_pred             HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc----------
Confidence            567888999999999988877765 578889999999888 45556654488889999999999888764          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccch
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFGA  183 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~~  183 (396)
                         ....+..+++|+.|++.++....
T Consensus       171 ---~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          171 ---PHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ---CTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ---CHHHHhCCCCCCEEEeeCCceeC
Confidence               34567778888888888877643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=2.8e-15  Score=134.41  Aligned_cols=158  Identities=23%  Similarity=0.312  Sum_probs=136.9

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN   82 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~   82 (396)
                      ++..++.+..+++|++|++++|.+..++....+++|+.|++++|.+..++.  +..+++|++|++++| .++.++ .+..
T Consensus        57 ~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~i~~~~-~l~~  132 (291)
T 1h6t_A           57 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GISDIN-GLVH  132 (291)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCCCCG-GGGG
T ss_pred             CcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-cCCCCh-hhcC
Confidence            466677888999999999999999997767889999999999999988765  899999999999999 777764 5889


Q ss_pred             CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468           83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV  162 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  162 (396)
                      +++|++|++++|.++.+ ..+..+++|++|++++|. ...++.  +..+++|++|++++|.+...               
T Consensus       133 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~l---------------  193 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDL---------------  193 (291)
T ss_dssp             CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBC---------------
T ss_pred             CCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCCC---------------
Confidence            99999999999999988 578899999999999984 444444  88999999999999988753               


Q ss_pred             HhhhcCCCCcEEEEEecccch
Q 044468          163 EELLALKHLNLLTVTLQIFGA  183 (396)
Q Consensus       163 ~~l~~l~~L~~L~l~~~~~~~  183 (396)
                      ..+..+++|+.|++.++....
T Consensus       194 ~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          194 RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGTTCTTCSEEEEEEEEEEC
T ss_pred             hhhccCCCCCEEECcCCcccC
Confidence            357889999999999887644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.65  E-value=7.2e-17  Score=149.56  Aligned_cols=263  Identities=13%  Similarity=0.049  Sum_probs=173.2

Q ss_pred             EEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-----ccccCCC-cCCEEEccCCCCCcc-chhhhcC-----C
Q 044468           40 ALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-----LGILNLV-SLQHLDLSWTGITTL-PIELKYL-----V  107 (396)
Q Consensus        40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-----~~l~~l~-~L~~L~l~~~~l~~l-~~~l~~l-----~  107 (396)
                      ++.++.+.+....+.++....+|++|++++| .++..+     ..+..++ +|++|++++|.++.. +..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4678888887655564566667999999999 676554     4567788 899999999998844 4445554     9


Q ss_pred             cccEEecccccCCCCCCcc---hhcCC-CcccEEEeeccCccchhccchhccCCchhhhHhhhcC-CCCcEEEEEecccc
Q 044468          108 NLKCLNLEYTFCLSRIPQP---VISDL-KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL-KHLNLLTVTLQIFG  182 (396)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~---~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~  182 (396)
                      +|++|++++|......+..   .+..+ ++|++|++++|.+...         ........+..+ +.|+.|+++++...
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK---------SSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS---------CHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH---------HHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            9999999999655444332   13344 8999999999998763         111223345553 69999999988775


Q ss_pred             hhhhhhhccCCCCCc-ccceEEecccCCCcccchh----hhhcc-ccccceeeeccccceeeeccccccccccc-cc-cc
Q 044468          183 ALQRLLNYCNSSRSI-NTQSLCLRHLNNSNLLSAF----SFASL-RHLWTLHLYFNDFEELNIDAGEVKRIRET-RG-FH  254 (396)
Q Consensus       183 ~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~~~-~~-~~  254 (396)
                      ......-...+...+ +|+.|+++++. .......    .+..+ ++|++|+++.|.+.+.+...     ++.. .. .+
T Consensus       152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~-----l~~~l~~~~~  225 (362)
T 3goz_A          152 IKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE-----LAYIFSSIPN  225 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH-----HHHHHHHSCT
T ss_pred             HHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH-----HHHHHhcCCC
Confidence            321111111122222 59999999864 3333322    24445 59999999988887644321     1211 12 46


Q ss_pred             cCcEeEEeCceeecCCc------cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468          255 SLQKVYINYSKFRHATW------LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ  324 (396)
Q Consensus       255 ~L~~L~l~~~~l~~l~~------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  324 (396)
                      +|++|++++|.+++.+.      +..+++|++|++++|. +..+......     .+......+++|+.|+++++.
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~-----~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCK-----ALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHH-----HHHTTSTTCCEEEEECTTSCB
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHH-----HHHHHhccCCceEEEecCCCc
Confidence            99999999998777532      4668999999999886 2222111100     122245678889999998875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=2e-15  Score=133.22  Aligned_cols=153  Identities=22%  Similarity=0.189  Sum_probs=77.8

Q ss_pred             CCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468            5 TGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV   84 (396)
Q Consensus         5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~   84 (396)
                      .+++.+..+++|++|++++|.+..++....+++|+.|++++|.+..++.  +..+++|++|++++| .++.+|... . +
T Consensus        32 ~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~-~-~  106 (263)
T 1xeu_A           32 TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIP-S-A  106 (263)
T ss_dssp             TSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCC-C-S
T ss_pred             ccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCccc-c-C
Confidence            3334444555555555555555555433555555555555555555444  455555555555555 444444322 2 5


Q ss_pred             cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHh
Q 044468           85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE  164 (396)
Q Consensus        85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (396)
                      +|++|++++|.++.++ .+.++++|++|++++|. ...++ . ++.+++|++|++.+|.+...               ..
T Consensus       107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~-l~~l~~L~~L~L~~N~i~~~---------------~~  167 (263)
T 1xeu_A          107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-M-LGFLSKLEVLDLHGNEITNT---------------GG  167 (263)
T ss_dssp             SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-G-GGGCTTCCEEECTTSCCCBC---------------TT
T ss_pred             cccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-H-HccCCCCCEEECCCCcCcch---------------HH
Confidence            5555555555555543 34555555555555552 22233 1 55555555555555554431               34


Q ss_pred             hhcCCCCcEEEEEeccc
Q 044468          165 LLALKHLNLLTVTLQIF  181 (396)
Q Consensus       165 l~~l~~L~~L~l~~~~~  181 (396)
                      +..+++|+.|++.++..
T Consensus       168 l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             STTCCCCCEEEEEEEEE
T ss_pred             hccCCCCCEEeCCCCcc
Confidence            44455555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=2e-15  Score=148.35  Aligned_cols=174  Identities=22%  Similarity=0.267  Sum_probs=125.5

Q ss_pred             CCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468            5 TGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV   84 (396)
Q Consensus         5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~   84 (396)
                      .++..+..+++|+.|+++++.+..++....+++|+.|++++|.+..+++  +..+++|++|++++| .+..+| .+..++
T Consensus        34 ~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~  109 (605)
T 1m9s_A           34 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLK  109 (605)
T ss_dssp             TSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCT
T ss_pred             ccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCC
Confidence            3444455677788888888888777655778888888888888877765  778888888888888 666655 577788


Q ss_pred             cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHh
Q 044468           85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE  164 (396)
Q Consensus        85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (396)
                      +|++|++++|.++.++ .+..+++|+.|++++|. +..++ . +..+++|+.|++++|.+...             .  .
T Consensus       110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~~~-------------~--~  170 (605)
T 1m9s_A          110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISDI-------------V--P  170 (605)
T ss_dssp             TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCCCC-------------G--G
T ss_pred             CCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCCcCCCc-------------h--h
Confidence            8888888888887764 47778888888888874 33442 2 77888888888888877653             1  1


Q ss_pred             hhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468          165 LLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL  207 (396)
Q Consensus       165 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  207 (396)
                      +..+++|+.|+++.+.+..++      .+.++++|+.|++.++
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSE
T ss_pred             hccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCC
Confidence            677778888887777665543      2444556777777664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=7.5e-15  Score=126.81  Aligned_cols=130  Identities=28%  Similarity=0.380  Sum_probs=61.9

Q ss_pred             ccccEEEcccccccccc-CC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEE
Q 044468           14 KEITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLD   90 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~   90 (396)
                      ++|++|++++|.+..+. .. ..+++|+.|++++|.+..++...+..+++|++|++++| .++.++. .+..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence            44555555555555432 22 44555555555555554444443445555555555555 4443332 234455555555


Q ss_pred             ccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468           91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFK  145 (396)
Q Consensus        91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~  145 (396)
                      +++|.++.+|..+.++++|++|++++| .+..++...+..+++|+.|++.+|.+.
T Consensus       119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          119 MCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555555555544555555555555554 223333333444555555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=8.9e-16  Score=139.06  Aligned_cols=225  Identities=13%  Similarity=0.086  Sum_probs=160.2

Q ss_pred             cccEEEcccccccc--cc---CCCCCCCCcEEEccCCccC-ccChHHH--hcCccccEEEeecCCCCcc-cc----cccc
Q 044468           15 EITRMSLMQNAIQN--LT---ETPTCPHLRALFLHSNHLG-TVSNNFF--HSMASLRVLIFLYNRSLEN-LP----LGIL   81 (396)
Q Consensus        15 ~L~~L~l~~~~~~~--l~---~~~~~~~L~~L~l~~~~~~-~~~~~~~--~~l~~L~~L~l~~~~~~~~-l~----~~l~   81 (396)
                      .++.+.+.++.+..  +.   ....+++|+.|++++|.+. ..+.. +  ..+++|++|++++| .++. .+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence            47888888877654  22   2234567999999999886 44444 5  88999999999999 5543 22    2345


Q ss_pred             CCCcCCEEEccCCCCCccc-hhhhcCCcccEEecccccCCCC--CC-cchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           82 NLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSR--IP-QPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~--~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .+++|++|++++|.+..++ ..+.++++|++|++++|...+.  ++ ...++.+++|++|++++|.++..          
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------  212 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----------  212 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------
Confidence            7899999999999998665 5688999999999999865432  21 22246889999999999998753          


Q ss_pred             chhhhH-hhhcCCCCcEEEEEecccchh-hhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc
Q 044468          158 SEVLVE-ELLALKHLNLLTVTLQIFGAL-QRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE  235 (396)
Q Consensus       158 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  235 (396)
                       +.... .+..+++|+.|+++.+..... +..  ...+...++|+.|+++++.-. .... .+  +++|+.|+++.|.++
T Consensus       213 -~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~--~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          213 -TGVCAALAAAGVQPHSLDLSHNSLRATVNPS--APRCMWSSALNSLNLSFAGLE-QVPK-GL--PAKLRVLDLSSNRLN  285 (310)
T ss_dssp             -HHHHHHHHHHTCCCSSEECTTSCCCCCCCSC--CSSCCCCTTCCCEECCSSCCC-SCCS-CC--CSCCSCEECCSCCCC
T ss_pred             -HHHHHHHHhcCCCCCEEECCCCCCCccchhh--HHhccCcCcCCEEECCCCCCC-chhh-hh--cCCCCEEECCCCcCC
Confidence             12222 357889999999999887654 110  122222367999999886433 2221 12  379999999999988


Q ss_pred             eeeeccccccccccccccccCcEeEEeCceeec
Q 044468          236 ELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH  268 (396)
Q Consensus       236 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  268 (396)
                      .+.. .         ..+++|++|++++|.+++
T Consensus       286 ~~~~-~---------~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          286 RAPQ-P---------DELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-T---------TSCCCCSCEECSSTTTSC
T ss_pred             CCch-h---------hhCCCccEEECcCCCCCC
Confidence            6532 1         178999999999996654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=6.3e-15  Score=124.21  Aligned_cols=139  Identities=22%  Similarity=0.265  Sum_probs=116.3

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCc-cChHHHhcCccccEEEeecCCCCc-ccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGT-VSNNFFHSMASLRVLIFLYNRSLE-NLPLG   79 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~   79 (396)
                      -++..++.+..+++|++|++++|.+..++....+++|++|++++|.+.. .+.. +..+++|++|++++| .++ ..+..
T Consensus        54 n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~i~~~~~~~  131 (197)
T 4ezg_A           54 INVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS-AHDDSILTK  131 (197)
T ss_dssp             SCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSS-BCBGGGHHH
T ss_pred             CCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCC-ccCcHhHHH
Confidence            3566777888999999999999988877766889999999999999875 4444 899999999999999 555 46777


Q ss_pred             ccCCCcCCEEEccCCC-CCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           80 ILNLVSLQHLDLSWTG-ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      ++.+++|++|++++|. ++.+| .+.++++|++|++++|. ...++ . +..+++|++|++.+|.+.+
T Consensus       132 l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECBC----
T ss_pred             HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeCcccCC
Confidence            8999999999999997 88887 68999999999999984 44555 3 8899999999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=1.1e-14  Score=124.93  Aligned_cols=151  Identities=18%  Similarity=0.225  Sum_probs=111.8

Q ss_pred             cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCC
Q 044468           17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTG   95 (396)
Q Consensus        17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~   95 (396)
                      +.++.++++++.+|.. -.++|+.|++++|.+..++...+..+++|++|++++| .+..+ |..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence            5677888888777764 1267888888888887777655788888888888888 55554 5677888888888888888


Q ss_pred             CCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468           96 ITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL  174 (396)
Q Consensus        96 l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  174 (396)
                      ++.+|.. +.++++|++|++++|.+ ..++...+..+++|++|++.+|.+...             ....+..+++|+.+
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTI-------------AKGTFSPLRAIQTM  157 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCcCCEE-------------CHHHHhCCCCCCEE
Confidence            8877765 56788888888888744 444333377888888888888887764             33456677788888


Q ss_pred             EEEecccch
Q 044468          175 TVTLQIFGA  183 (396)
Q Consensus       175 ~l~~~~~~~  183 (396)
                      ++.++....
T Consensus       158 ~L~~N~~~c  166 (220)
T 2v9t_B          158 HLAQNPFIC  166 (220)
T ss_dssp             ECCSSCEEC
T ss_pred             EeCCCCcCC
Confidence            877776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=1.7e-14  Score=123.79  Aligned_cols=142  Identities=27%  Similarity=0.360  Sum_probs=119.3

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG   79 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~   79 (396)
                      .+++.+|. .-.+++++|++++|.+..++..  ..+++|+.|++++|.+..+.+..+..+++|++|++++| .++.+|..
T Consensus        21 ~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~   98 (220)
T 2v9t_B           21 KGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKS   98 (220)
T ss_dssp             SCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             CCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHh
Confidence            45667764 1236899999999999997653  88999999999999998875555999999999999999 78877754


Q ss_pred             -ccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           80 -ILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        80 -l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                       +.++++|++|++++|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++.+|.+.-
T Consensus        99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence             67899999999999999976 456889999999999998 4555565558899999999999998754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=2.8e-14  Score=121.36  Aligned_cols=131  Identities=26%  Similarity=0.364  Sum_probs=70.2

Q ss_pred             CccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEE
Q 044468           13 WKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHL   89 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L   89 (396)
                      .+++++|++++|.+..++..  ..+++|+.|++++|.+..++...+..+++|++|++++| .++.++. .+.++++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence            34556666666655554432  45556666666666555555444455566666666665 4444432 24555666666


Q ss_pred             EccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468           90 DLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFK  145 (396)
Q Consensus        90 ~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~  145 (396)
                      ++++|.++.++.. +.++++|++|++++|. ...++...+..+++|++|++.+|.+.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence            6666655554443 4555566666665552 33334333555556666666555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=1.2e-14  Score=142.84  Aligned_cols=158  Identities=23%  Similarity=0.299  Sum_probs=137.0

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN   82 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~   82 (396)
                      ++..++.+..+++|+.|++++|.+..++....+++|+.|++++|.+..++.  +..+++|++|++++| .+..++ .+..
T Consensus        54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~  129 (605)
T 1m9s_A           54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN-GISDIN-GLVH  129 (605)
T ss_dssp             CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTS-CCCCCG-GGGG
T ss_pred             CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCC-CCCCCc-cccC
Confidence            466678889999999999999999997767899999999999999988764  899999999999999 777764 5889


Q ss_pred             CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468           83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV  162 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  162 (396)
                      +++|+.|++++|.++.+ ..+..+++|++|++++|.+.. ++.  +..+++|+.|++++|.+...               
T Consensus       130 l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~l---------------  190 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDL---------------  190 (605)
T ss_dssp             CTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBC---------------
T ss_pred             CCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCCC---------------
Confidence            99999999999999988 578899999999999985444 433  88999999999999988752               


Q ss_pred             HhhhcCCCCcEEEEEecccch
Q 044468          163 EELLALKHLNLLTVTLQIFGA  183 (396)
Q Consensus       163 ~~l~~l~~L~~L~l~~~~~~~  183 (396)
                      ..+..+++|+.|++..+.+..
T Consensus       191 ~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          191 RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GGGTTCTTCSEEECCSEEEEC
T ss_pred             hHHccCCCCCEEEccCCcCcC
Confidence            468889999999998887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=2e-15  Score=133.20  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=124.6

Q ss_pred             CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEc
Q 044468           12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDL   91 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l   91 (396)
                      .+.+++.+++.++.+..++....+++|+.|++++|.+..++ . +..+++|++|++++| .++.++. +.++++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence            45667778888888888774478889999999999888887 3 788999999999999 7777766 888999999999


Q ss_pred             cCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC
Q 044468           92 SWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL  171 (396)
Q Consensus        92 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  171 (396)
                      ++|.++.+|....  ++|++|++++|. ...++.  +..+++|++|++++|.++..               ..+..+++|
T Consensus        93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~~---------------~~l~~l~~L  152 (263)
T 1xeu_A           93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKSI---------------VMLGFLSKL  152 (263)
T ss_dssp             CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCBC---------------GGGGGCTTC
T ss_pred             CCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCCC---------------hHHccCCCC
Confidence            9998888775433  889999999984 444543  88899999999999887753               356777788


Q ss_pred             cEEEEEecccchhhhhhhccCCCCCcccceEEecc
Q 044468          172 NLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRH  206 (396)
Q Consensus       172 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  206 (396)
                      +.|+++.+.....      ..+..+++|+.|++.+
T Consensus       153 ~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          153 EVLDLHGNEITNT------GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CEEECTTSCCCBC------TTSTTCCCCCEEEEEE
T ss_pred             CEEECCCCcCcch------HHhccCCCCCEEeCCC
Confidence            8777776665443      2233444455555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=2.6e-14  Score=122.56  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=117.8

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCcc-ChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTV-SNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSW   93 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~   93 (396)
                      -++++++++.++.+|.. -...++.|++++|.+..+ +..++..+++|++|++++| .++.++. .+.++++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence            46888998888887764 234568899999988776 3444788999999999998 6766654 688899999999999


Q ss_pred             CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468           94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN  172 (396)
Q Consensus        94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  172 (396)
                      |.++.++.. +.++++|++|++++|.+....|.. +..+++|++|++.+|.+...             ....+..+++|+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~  156 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTV-------------APGAFDTLHSLS  156 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCB-------------CTTTTTTCTTCC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEE-------------CHHHhcCCCCCC
Confidence            988877654 788999999999998544433444 88889999999999988763             456777888888


Q ss_pred             EEEEEecccch
Q 044468          173 LLTVTLQIFGA  183 (396)
Q Consensus       173 ~L~l~~~~~~~  183 (396)
                      .|++.++....
T Consensus       157 ~L~L~~N~l~c  167 (220)
T 2v70_A          157 TLNLLANPFNC  167 (220)
T ss_dssp             EEECCSCCEEC
T ss_pred             EEEecCcCCcC
Confidence            88888877643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=2.8e-14  Score=132.00  Aligned_cols=164  Identities=24%  Similarity=0.269  Sum_probs=100.7

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCC--C-CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET--P-TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-   78 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-   78 (396)
                      +++.+|. .-.+.++.|++++|.+..++..  . .+++|+.|++++|.+..++...+..+++|++|++++| .++.++. 
T Consensus        29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~  106 (361)
T 2xot_A           29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEF  106 (361)
T ss_dssp             CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred             CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHH
Confidence            4445542 1223567777777777775544  3 6777777777777776666555677777777777777 5555543 


Q ss_pred             cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchh---cCCCcccEEEeeccCccchhccchhc
Q 044468           79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVI---SDLKMLRALRMFECGFKVEQEADRIL  154 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i---~~l~~L~~L~l~~~~~~~~~~~~~~~  154 (396)
                      .+.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...+   ..+++|+.|++++|.+...       
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-------  178 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-------  178 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCC-------
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-------
Confidence            466677777777777777655 345667777777777776 4445555534   4567777777777766653       


Q ss_pred             cCCchhhhHhhhcCCC--CcEEEEEecccc
Q 044468          155 FGDSEVLVEELLALKH--LNLLTVTLQIFG  182 (396)
Q Consensus       155 ~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  182 (396)
                            ....+..++.  ++.|++.++...
T Consensus       179 ------~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 ------PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ------CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ------CHHHhhhccHhhcceEEecCCCcc
Confidence                  2334444444  255666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=4.6e-14  Score=121.85  Aligned_cols=150  Identities=23%  Similarity=0.258  Sum_probs=124.4

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~   94 (396)
                      -+.++.+++.+..+|.. -.++|+.|++++|.+..+++..+..+++|++|++++| .++.+|. .+..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence            56789999988888874 2389999999999998876555899999999999999 7777764 4688999999999999


Q ss_pred             CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      .++.++.. +..+++|++|++++| .+..+|.. +..+++|++|++.+|.+...             ....+..+++|+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~  163 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI-------------PHGAFDRLSSLTH  163 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC-------------CTTTTTTCTTCCE
T ss_pred             cCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc-------------CHHHHhCCCCCCE
Confidence            99988765 678999999999998 45578877 78999999999999988764             3356777888888


Q ss_pred             EEEEecccc
Q 044468          174 LTVTLQIFG  182 (396)
Q Consensus       174 L~l~~~~~~  182 (396)
                      |++.++...
T Consensus       164 L~l~~N~~~  172 (229)
T 3e6j_A          164 AYLFGNPWD  172 (229)
T ss_dssp             EECTTSCBC
T ss_pred             EEeeCCCcc
Confidence            888777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=7.2e-14  Score=119.82  Aligned_cols=141  Identities=21%  Similarity=0.259  Sum_probs=116.8

Q ss_pred             CCCCCCccCCCccccEEEccccccccccC--C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTE--T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L   78 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~--~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~   78 (396)
                      +++.+|. .-.+.+++|++++|.+..++.  . ..+++|+.|++++|.+..++...+..+++|++|++++| .++.++ .
T Consensus        22 ~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~   99 (220)
T 2v70_A           22 KLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHK   99 (220)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGG
T ss_pred             CcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHh
Confidence            4555653 223468999999999999733  2 78999999999999999888766999999999999999 667665 4


Q ss_pred             cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      .+.++++|++|++++|.++.+ |..+.++++|++|++++|.+....|.. +..+++|++|++.+|.+..
T Consensus       100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCCEEC
T ss_pred             HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcCCcC
Confidence            588999999999999999976 566889999999999998544433544 8999999999999998765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.53  E-value=1.4e-13  Score=117.01  Aligned_cols=149  Identities=25%  Similarity=0.273  Sum_probs=117.8

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~   94 (396)
                      -+.++.+++++..++.. ..++|++|++++|.+..++...+..+++|++|++++| .++.++. .+..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence            36778888888877653 3468999999999998888776789999999999999 7776664 4678999999999999


Q ss_pred             CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      .++.++.. +.++++|++|++++|. ...++...+..+++|++|++.+|.+...             ....+..+++|+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~  152 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQY  152 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCE
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcccee-------------CHHHhccCCCccE
Confidence            99877765 6889999999999984 4556655578899999999999987763             3334566677777


Q ss_pred             EEEEecc
Q 044468          174 LTVTLQI  180 (396)
Q Consensus       174 L~l~~~~  180 (396)
                      |++.++.
T Consensus       153 L~l~~N~  159 (208)
T 2o6s_A          153 IWLHDNP  159 (208)
T ss_dssp             EECCSCC
T ss_pred             EEecCCC
Confidence            7766653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=3.4e-14  Score=116.45  Aligned_cols=128  Identities=22%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             ccccEEEccccccc--cccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-ccccccCCCcCCEE
Q 044468           14 KEITRMSLMQNAIQ--NLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPLGILNLVSLQHL   89 (396)
Q Consensus        14 ~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L   89 (396)
                      +++++|++++|.+.  .++.. ..+++|+.|++++|.+..+ .. +..+++|++|++++| .+.. +|..+.++++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence            44555555555555  34444 4555555555555555444 22 455555555555555 3333 44444445555555


Q ss_pred             EccCCCCCccc--hhhhcCCcccEEecccccCCCCCCc---chhcCCCcccEEEeeccCcc
Q 044468           90 DLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIPQ---PVISDLKMLRALRMFECGFK  145 (396)
Q Consensus        90 ~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~i~~l~~L~~L~l~~~~~~  145 (396)
                      ++++|.++.+|  ..+..+++|++|++++|.. ..++.   ..+..+++|++|++.+|...
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55555555443  3455555555555555532 22232   22455555555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=1.8e-14  Score=119.13  Aligned_cols=134  Identities=18%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             CCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc-cCCC
Q 044468            7 APRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI-LNLV   84 (396)
Q Consensus         7 ~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l-~~l~   84 (396)
                      .+.+.++++|++|++++|.+..++.. ...++|+.|++++|.+..++ . +..+++|++|++++| .++.+|..+ ..++
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQALP   88 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcCC
Confidence            34455666777777777777666544 33347777777777666552 2 666777777777777 555555433 5667


Q ss_pred             cCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcc---hhcCCCcccEEEeeccCc
Q 044468           85 SLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQP---VISDLKMLRALRMFECGF  144 (396)
Q Consensus        85 ~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~---~i~~l~~L~~L~l~~~~~  144 (396)
                      +|++|++++|.++.+|.  .+..+++|++|++++|.. ..+|..   ++..+++|+.|++..+..
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            77777777776666665  566666777777766633 233432   355566666666665544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.50  E-value=2.7e-13  Score=131.90  Aligned_cols=137  Identities=25%  Similarity=0.305  Sum_probs=102.0

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      +++.|++++|.+.++|... .++|+.|++++|.+..+|    ..+++|++|++++| .++.+|. +.+  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence            7888888888888776642 478888888888888777    34688888888888 6777777 554  8888888888


Q ss_pred             CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468           95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL  174 (396)
Q Consensus        95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  174 (396)
                      .++.+|.   .+++|++|++++|. +..+|.    .+++|++|++++|.++..              .. +.  ++|+.|
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~l--------------p~-l~--~~L~~L  185 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFL--------------PE-LP--ESLEAL  185 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC--------------CC-CC--TTCCEE
T ss_pred             cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCc--------------ch-hh--CCCCEE
Confidence            8888876   67888888888874 444664    467888888888877653              11 32  677777


Q ss_pred             EEEecccchhh
Q 044468          175 TVTLQIFGALQ  185 (396)
Q Consensus       175 ~l~~~~~~~~~  185 (396)
                      +++.+.+..++
T Consensus       186 ~Ls~N~L~~lp  196 (571)
T 3cvr_A          186 DVSTNLLESLP  196 (571)
T ss_dssp             ECCSSCCSSCC
T ss_pred             ECcCCCCCchh
Confidence            77777665443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=5.2e-14  Score=112.93  Aligned_cols=124  Identities=23%  Similarity=0.202  Sum_probs=77.6

Q ss_pred             CccccEEEccccccc--cccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-ccccccCCCcCCE
Q 044468           13 WKEITRMSLMQNAIQ--NLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPLGILNLVSLQH   88 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~   88 (396)
                      .+++++|++++|.+.  .++.. ..+++|+.|++++|.+..+ .. +..+++|++|++++| .++. +|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence            356777777777776  46555 6677777777777766655 22 666777777777777 4444 5555556677777


Q ss_pred             EEccCCCCCccc--hhhhcCCcccEEecccccCCCCCCc---chhcCCCcccEEEee
Q 044468           89 LDLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIPQ---PVISDLKMLRALRMF  140 (396)
Q Consensus        89 L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~i~~l~~L~~L~l~  140 (396)
                      |++++|.++.++  ..+..+++|++|++++|... .++.   ..++.+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            777777666544  55666677777777666333 3332   235566666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=2.5e-13  Score=111.29  Aligned_cols=138  Identities=22%  Similarity=0.216  Sum_probs=111.3

Q ss_pred             CCCCCCcEEEccCCccC--ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCc-cchhhhcCCcc
Q 044468           33 PTCPHLRALFLHSNHLG--TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITT-LPIELKYLVNL  109 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L  109 (396)
                      ...++|+.|++++|.+.  .+|.. +..+++|++|++++| .++.+ ..+..+++|++|++++|.++. +|..+.++++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            45688999999999987  78776 789999999999999 67776 678899999999999999986 77777889999


Q ss_pred             cEEecccccCCCCCCc-chhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchh
Q 044468          110 KCLNLEYTFCLSRIPQ-PVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGAL  184 (396)
Q Consensus       110 ~~L~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  184 (396)
                      ++|++++|. ...++. ..+..+++|++|++.+|.+...          .......+..+++|+.|++..+.....
T Consensus        98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~----------~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNL----------NDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTS----------TTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcch----------HHHHHHHHHhCccCcEecCCCCChhhc
Confidence            999999984 455442 3388999999999999988763          011124678888999888887766443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=5.6e-13  Score=123.21  Aligned_cols=157  Identities=19%  Similarity=0.191  Sum_probs=122.5

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHh-cCccccEEEeecCCCCcccc-ccccCCCcCCEEEccC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFH-SMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSW   93 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~   93 (396)
                      -+.++++++++..+|.. -.+.++.|++++|.+..++...+. .+++|++|++++| .+..++ ..+.++++|++|++++
T Consensus        20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence            46899999999988764 234689999999999888877566 8999999999999 777665 5688999999999999


Q ss_pred             CCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468           94 TGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN  172 (396)
Q Consensus        94 ~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  172 (396)
                      |.++.++. .+.++++|++|++++|.+ ..++...+..+++|++|++.+|.+...          ....+..+..+++|+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l----------~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRF----------PVELIKDGNKLPKLM  166 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSC----------CGGGTC----CTTCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCee----------CHHHhcCcccCCcCC
Confidence            99997766 478999999999999854 444443489999999999999988864          111222236788888


Q ss_pred             EEEEEecccchhh
Q 044468          173 LLTVTLQIFGALQ  185 (396)
Q Consensus       173 ~L~l~~~~~~~~~  185 (396)
                      .|+++.+.+..++
T Consensus       167 ~L~L~~N~l~~l~  179 (361)
T 2xot_A          167 LLDLSSNKLKKLP  179 (361)
T ss_dssp             EEECCSSCCCCCC
T ss_pred             EEECCCCCCCccC
Confidence            8888888776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.43  E-value=1e-12  Score=127.80  Aligned_cols=169  Identities=20%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             CCCCCCc-cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468            3 GLTGAPR-IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus         3 ~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      ++.++|. +  .++|++|++++|.+..+|  ..+++|+.|++++|.+..+|.  +..  +|++|++++| .++.+|.   
T Consensus        70 ~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~~lp~---  137 (571)
T 3cvr_A           70 NLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLTMLPE---  137 (571)
T ss_dssp             CCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCSCCCC---
T ss_pred             CCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCCCCCC---
Confidence            4555654 3  478999999999999888  678999999999999988876  444  9999999999 7777877   


Q ss_pred             CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468           82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL  161 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  161 (396)
                      .+++|++|++++|.++.+|.   .+++|++|++++|. +..+|.  +.  ++|++|++++|.++.+           +..
T Consensus       138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~l-----------p~~  198 (571)
T 3cvr_A          138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESL-----------PAV  198 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSC-----------CCC
T ss_pred             cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCch-----------hhH
Confidence            68999999999999999886   67899999999984 555776  54  8999999999988764           110


Q ss_pred             hHh-hhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468          162 VEE-LLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL  207 (396)
Q Consensus       162 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  207 (396)
                      ... ....+.|+.|++.++.+..++.     .+.++++|+.|+++++
T Consensus       199 ~~~L~~~~~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          199 PVRNHHSEETEIFFRCRENRITHIPE-----NILSLDPTCTIILEDN  240 (571)
T ss_dssp             C--------CCEEEECCSSCCCCCCG-----GGGGSCTTEEEECCSS
T ss_pred             HHhhhcccccceEEecCCCcceecCH-----HHhcCCCCCEEEeeCC
Confidence            000 0111223777777776655443     1223455677777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=9.2e-13  Score=110.37  Aligned_cols=128  Identities=23%  Similarity=0.290  Sum_probs=106.1

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChH-HHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNN-FFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW   93 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~   93 (396)
                      -++++++++++..+|.. -..+|+.|++++|.+..++.. ++..+++|++|++++| .++.+ |..+.++++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence            37899999999888875 223899999999999877653 4789999999999999 66655 67889999999999999


Q ss_pred             CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      |.++.++.. +.++++|++|++++|.+....|.. +..+++|++|++.+|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence            999976654 788999999999998655555554 8899999999999998765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.41  E-value=2.5e-12  Score=107.76  Aligned_cols=127  Identities=20%  Similarity=0.268  Sum_probs=105.7

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~   94 (396)
                      -+.++++++++..+|.. -.++|+.|++++|.+..+|.. +..+++|++|++++| .++.++ ..+.++++|++|++++|
T Consensus        12 ~~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence            36789999999888764 236899999999999988865 899999999999999 676665 56889999999999999


Q ss_pred             CCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           95 GITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        95 ~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      .++.++. .+..+++|++|++++| .+..++...+..+++|+.|++.+|.+.-
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9997765 5888999999999998 4556666558889999999999987754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=3.8e-13  Score=107.82  Aligned_cols=129  Identities=20%  Similarity=0.284  Sum_probs=102.4

Q ss_pred             CCCCCCcEEEccCCccC--ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCc-cchhhhcCCcc
Q 044468           33 PTCPHLRALFLHSNHLG--TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITT-LPIELKYLVNL  109 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L  109 (396)
                      ...++|+.|++++|.+.  .+|.. +..+++|++|++++| .+..+ ..++++++|++|++++|.++. +|..+.++++|
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CCCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            34578999999999887  77765 789999999999999 77766 668889999999999999986 78778889999


Q ss_pred             cEEecccccCCCCCC--cchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEE
Q 044468          110 KCLNLEYTFCLSRIP--QPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTV  176 (396)
Q Consensus       110 ~~L~l~~~~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  176 (396)
                      ++|++++|. ...++  .. ++.+++|++|++.+|.++..          .......+..+++|+.|++
T Consensus        91 ~~L~ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~----------~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           91 THLNLSGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVTNL----------NDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CEEECTTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGGGS----------TTHHHHHHHHCTTCCEETT
T ss_pred             CEEECCCCc-CCChHHHHH-HhhCCCCCEEeCcCCcccch----------HHHHHHHHHHCCCcccccC
Confidence            999999984 44443  33 88899999999999988764          0111246777888887664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=4.3e-12  Score=104.80  Aligned_cols=129  Identities=21%  Similarity=0.278  Sum_probs=108.4

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSW   93 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~   93 (396)
                      ..+.++++++++..+|.. ..++|+.|++++|.+..++...+..+++|++|++++| .++.++. .+.++++|++|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence            357899999998888753 3479999999999998888776789999999999999 7777664 468899999999999


Q ss_pred             CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      |.++.++.. +..+++|++|++++| ....++...+..+++|++|++.+|.+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence            999987765 688999999999998 4556777657889999999999998765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=1.4e-12  Score=107.63  Aligned_cols=115  Identities=18%  Similarity=0.241  Sum_probs=101.0

Q ss_pred             CCCCCCccCCCc-cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc--c
Q 044468            3 GLTGAPRIGMWK-EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL--G   79 (396)
Q Consensus         3 ~l~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~   79 (396)
                      ++..++.+..+. +|+.|++++|.+..++....+++|++|++++|.+..+++..+..+++|++|++++| .++.+|.  .
T Consensus        30 ~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~  108 (176)
T 1a9n_A           30 KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDP  108 (176)
T ss_dssp             CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGG
T ss_pred             CCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHh
Confidence            455666676665 99999999999999855588999999999999999888775799999999999999 7888876  7


Q ss_pred             ccCCCcCCEEEccCCCCCccchh----hhcCCcccEEeccccc
Q 044468           80 ILNLVSLQHLDLSWTGITTLPIE----LKYLVNLKCLNLEYTF  118 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l~~~~  118 (396)
                      +..+++|++|++++|.++.+|..    +..+++|++|++++|.
T Consensus       109 l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            88999999999999999988875    8899999999999873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=4.9e-13  Score=130.50  Aligned_cols=124  Identities=19%  Similarity=0.156  Sum_probs=99.9

Q ss_pred             CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEeccc
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY  116 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~  116 (396)
                      .|+.|++++|.+..+|.  +..+++|++|++++| .++.+|..++++++|++|++++|.++.+| .++++++|++|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            58899999999988875  889999999999999 77788888999999999999999999888 788999999999999


Q ss_pred             ccCCCCC-CcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468          117 TFCLSRI-PQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT  175 (396)
Q Consensus       117 ~~~~~~~-~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  175 (396)
                      |.+.... |.. ++.+++|+.|++++|.+.+.          .+.....+..+++|+.|+
T Consensus       518 N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~----------~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE----------EGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGS----------SSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCC----------ccHHHHHHHHCcccCccC
Confidence            8554443 666 88999999999999988763          111223344567777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.33  E-value=2.2e-12  Score=129.73  Aligned_cols=111  Identities=28%  Similarity=0.265  Sum_probs=100.3

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL  112 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L  112 (396)
                      ..++.|+.|++++|.+..++.. +..+++|++|++++| .++.+|..++++++|++|+|++|.++.+|..++++++|++|
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            6789999999999999999888 669999999999999 77789988999999999999999999999999999999999


Q ss_pred             ecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468          113 NLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus       113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      ++++| .+..+|.. ++.+++|++|++++|.+.+.
T Consensus       299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             ECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred             ECCCC-CCCccChh-hhcCCCccEEeCCCCccCCC
Confidence            99998 55688887 99999999999999998764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.33  E-value=1.1e-11  Score=102.40  Aligned_cols=120  Identities=25%  Similarity=0.354  Sum_probs=100.6

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-   78 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-   78 (396)
                      .++..+|. ...+++++|++++|.+..++..  ..+++|++|++++|.+..++...+..+++|++|++++| .++.+|. 
T Consensus        17 ~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~   94 (177)
T 2o6r_A           17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG   94 (177)
T ss_dssp             SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHH
Confidence            34566652 3357899999999999987654  78999999999999999888776799999999999999 7776664 


Q ss_pred             cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCC
Q 044468           79 GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRI  123 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~  123 (396)
                      .+.++++|++|++++|.++.+|.. +..+++|++|++++|.+....
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            468899999999999999988876 578999999999998655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.32  E-value=5.8e-12  Score=122.94  Aligned_cols=122  Identities=21%  Similarity=0.170  Sum_probs=106.5

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      .|+.|++++|.++.+|....+++|+.|++++|.+..+|.. +..+++|++|++++| .++.+| .++++++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence            5889999999999998778899999999999999999887 899999999999999 788888 7999999999999999


Q ss_pred             CCCcc--chhhhcCCcccEEecccccCCCCCCc--chhcCCCcccEEEe
Q 044468           95 GITTL--PIELKYLVNLKCLNLEYTFCLSRIPQ--PVISDLKMLRALRM  139 (396)
Q Consensus        95 ~l~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~--~~i~~l~~L~~L~l  139 (396)
                      .++.+  |..+..+++|++|++++|.+.+..+.  .++..+++|+.|++
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99977  88999999999999999965544332  22445889998853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.32  E-value=4.6e-12  Score=106.05  Aligned_cols=126  Identities=16%  Similarity=0.193  Sum_probs=103.4

Q ss_pred             cEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc--cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecc
Q 044468           39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL--GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLE  115 (396)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~  115 (396)
                      ++++++++.+.++|.. +  ..++++|++++| .++.++.  .++++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus        11 ~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRD-I--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCccC-C--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            7899999999988875 3  238999999999 7777765  388999999999999999966 6678999999999999


Q ss_pred             cccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc
Q 044468          116 YTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG  182 (396)
Q Consensus       116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  182 (396)
                      +|.+ ..++...+..+++|++|++++|.+.+.             ....+..+++|+.|++.++...
T Consensus        87 ~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKI-KEISNKMFLGLHQLKTLNLYDNQISCV-------------MPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCC-CEECSSSSTTCTTCCEEECCSSCCCEE-------------CTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcC-CccCHHHhcCCCCCCEEECCCCcCCee-------------CHHHhhcCCCCCEEEeCCCCcc
Confidence            9854 444444488999999999999998874             4567778888888888877664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.2e-11  Score=103.48  Aligned_cols=117  Identities=28%  Similarity=0.383  Sum_probs=100.3

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-cc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LG   79 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~   79 (396)
                      .+++.+|. .-.+++++|++++|.+..++.. ..+++|+.|++++|.+..++...|..+++|++|++++| .+..++ ..
T Consensus        20 ~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~   97 (193)
T 2wfh_A           20 KGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRT   97 (193)
T ss_dssp             SCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred             CCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHH
Confidence            35666663 2246899999999999998866 89999999999999999888776999999999999999 777665 46


Q ss_pred             ccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCC
Q 044468           80 ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCL  120 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~  120 (396)
                      +.++++|++|++++|.++.+|.. +..+++|++|++.+|.+.
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            88999999999999999988875 788999999999998543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=5.3e-14  Score=118.62  Aligned_cols=109  Identities=21%  Similarity=0.249  Sum_probs=72.7

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL  112 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L  112 (396)
                      ..+++|++|++++|.+..+| . +..+++|++|++++| .++.+|..+..+++|++|++++|.++.+| .+.++++|++|
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            56677777777777776666 3 677777777777777 56666665666677777777777777665 46667777777


Q ss_pred             ecccccCCCCCCc-chhcCCCcccEEEeeccCccc
Q 044468          113 NLEYTFCLSRIPQ-PVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus       113 ~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      ++++|. ...++. ..+..+++|++|++.+|.+..
T Consensus       121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            777763 333332 226667777777777776543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=6.1e-13  Score=133.82  Aligned_cols=116  Identities=23%  Similarity=0.217  Sum_probs=103.6

Q ss_pred             ccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCC
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ   87 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~   87 (396)
                      .+..++.|+.|++++|.+..++.. ..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+|..++++++|+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLK  296 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCS
T ss_pred             hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCC
Confidence            467788999999999999988876 8899999999999999999987 899999999999999 7889999999999999


Q ss_pred             EEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcc
Q 044468           88 HLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP  126 (396)
Q Consensus        88 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~  126 (396)
                      +|+|++|.++.+|..++++++|++|++++|.+.+.+|..
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            999999999999999999999999999999666555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=1.5e-11  Score=112.10  Aligned_cols=251  Identities=14%  Similarity=0.066  Sum_probs=149.7

Q ss_pred             CccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhc--------CccccEEEeecCCCCcccc-ccccC
Q 044468           13 WKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHS--------MASLRVLIFLYNRSLENLP-LGILN   82 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~l~-~~l~~   82 (396)
                      +++|++|++++|.+..+... ..++.++.+....+   .++..+|..        |++|+.+++...  ++.++ ..+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~~--i~~I~~~aF~~  122 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSEK--IKNIEDAAFKG  122 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCTT--CCEECTTTTTT
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCcc--ccchhHHHhhc
Confidence            67799999999988832221 22333444444444   445555677        888888888773  44454 45777


Q ss_pred             CCcCCEEEccCCCCCccchh-hhcCCcccEEeccccc---CCCCCCcchhcCCCccc-EEEeeccCccchhcc-------
Q 044468           83 LVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTF---CLSRIPQPVISDLKMLR-ALRMFECGFKVEQEA-------  150 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~---~~~~~~~~~i~~l~~L~-~L~l~~~~~~~~~~~-------  150 (396)
                      +++|+.+++.++.+..++.. +..+.++..+......   ....+....+..+.+|+ .+.+...........       
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR  202 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence            88888888888777655543 5566666666554421   01112211133444444 222221110000000       


Q ss_pred             ----chhccCCchhhhHhhh-cCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcccccc
Q 044468          151 ----DRILFGDSEVLVEELL-ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLW  225 (396)
Q Consensus       151 ----~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  225 (396)
                          ....+.........+. .+++|+.+++..+....++.    ..+.+|++|+.+.+.+.  +...+..++.+|++|+
T Consensus       203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc--cceehHHHhhCChhcc
Confidence                0000000111222222 37889999988776665543    45778888999999763  5555556789999999


Q ss_pred             -ceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCCCCccEEee
Q 044468          226 -TLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLAPRAKVIRI  283 (396)
Q Consensus       226 -~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l  283 (396)
                       .+.+.. .++.++.....        .|++|+++++.++.++.++  .+.++++|+.+..
T Consensus       277 ~~l~l~~-~l~~I~~~aF~--------~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFM--------GCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECT-TCCEECTTTTT--------TCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEEcc-cceEEchhhhh--------CCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             999986 67766654332        7899999999888777765  4778999998864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.27  E-value=2.5e-10  Score=106.62  Aligned_cols=258  Identities=12%  Similarity=0.133  Sum_probs=173.8

Q ss_pred             CccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEE
Q 044468           13 WKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHL   89 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L   89 (396)
                      +..++.+.+.+. ++.++..  .++ +|+.+.+..+ +..+...+|..+ +|+.+.+..+  +..++ ..+.++.+|+.+
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCee
Confidence            456777777653 5565554  454 7888888765 777777767774 6999988863  55554 567788999999


Q ss_pred             EccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCC
Q 044468           90 DLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALK  169 (396)
Q Consensus        90 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  169 (396)
                      ++..+.++.++...-.+.+|+.+.+..+  ...++...+..+++|+.+.+..+ ++.+             ...++.+ .
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I-------------~~~aF~~-~  248 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTI-------------GQEAFRE-S  248 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEE-------------CTTTTTT-C
T ss_pred             ecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCc-------------ccccccc-C
Confidence            9998888888876555788999998764  55666666888999999998864 3332             2334444 5


Q ss_pred             CCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCC----cccchhhhhccccccceeeeccccceeeecccccc
Q 044468          170 HLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS----NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK  245 (396)
Q Consensus       170 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~  245 (396)
                      .|+.+.+... ...+.    ...+.+|++|+.+.+.+....    .......+.+|++|+.+.+. +.++.++.....  
T Consensus       249 ~L~~i~lp~~-i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~--  320 (401)
T 4fdw_A          249 GITTVKLPNG-VTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLG--  320 (401)
T ss_dssp             CCSEEEEETT-CCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTT--
T ss_pred             CccEEEeCCC-ccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhc--
Confidence            7887777432 22222    245677888999988763221    12333468889999999988 457766654432  


Q ss_pred             ccccccccccCcEeEEeCceeecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccc-cCcceeeccC
Q 044468          246 RIRETRGFHSLQKVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF-GRLEYLILEG  322 (396)
Q Consensus       246 ~~~~~~~~~~L~~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~  322 (396)
                            .|.+|+.+.+..+ ++.+  ..+.++ +|+.+.+.++. ...+....            ...+ .+++.|.+..
T Consensus       321 ------~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~------------F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          321 ------GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKV------------WYGFPDDITVIRVPA  379 (401)
T ss_dssp             ------TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSS------------CCCSCTTCCEEEECG
T ss_pred             ------CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC-Cccccccc------------ccCCCCCccEEEeCH
Confidence                  6889999999766 4433  346677 89999998763 44443322            2334 3677887754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=1.2e-11  Score=112.64  Aligned_cols=271  Identities=13%  Similarity=0.104  Sum_probs=166.8

Q ss_pred             CccccEEEccccc-cccccCC-CCCCCCcEEEccCCccC--ccChHHHhcCccccEEEeecCCCCcccc-ccccC-----
Q 044468           13 WKEITRMSLMQNA-IQNLTET-PTCPHLRALFLHSNHLG--TVSNNFFHSMASLRVLIFLYNRSLENLP-LGILN-----   82 (396)
Q Consensus        13 ~~~L~~L~l~~~~-~~~l~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~-----   82 (396)
                      +.++++|.+.++- -..+... ..+++|+.|++++|.+.  ....   ..++.++.+....+    .+| ..+.+     
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhccccccc
Confidence            4567888887651 1112222 22788888999888776  3332   23333455555555    333 34566     


Q ss_pred             ---CCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCc----cchhccch--
Q 044468           83 ---LVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF----KVEQEADR--  152 (396)
Q Consensus        83 ---l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~----~~~~~~~~--  152 (396)
                         +.+|+.+++.. .++.++.. +.++++|+.+++.++ ....++...+..+.++..+.......    ..+.....  
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               99999999998 88887765 889999999999987 44466666588877777766544211    00000000  


Q ss_pred             ---------h--ccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcc
Q 044468          153 ---------I--LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASL  221 (396)
Q Consensus       153 ---------~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  221 (396)
                               +  .+..............++..+.+.+.-........    ...|++|+.+++.++. ++..+..++.+|
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l----~~~~~~L~~l~L~~n~-i~~I~~~aF~~~  249 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLI----RDYMPNLVSLDISKTN-ATTIPDFTFAQK  249 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHH----HHHCTTCCEEECTTBC-CCEECTTTTTTC
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHH----HHhcCCCeEEECCCCC-cceecHhhhhCC
Confidence                     0  00000011111123456666666654332111110    0125669999998743 455555678999


Q ss_pred             ccccceeeeccccceeeeccccccccccccccccCc-EeEEeCceeecC--CccCCCCCccEEeeccccccceeeccccc
Q 044468          222 RHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQ-KVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKL  298 (396)
Q Consensus       222 ~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  298 (396)
                      .+|+++++..+ ++.++.....        .|++|+ .+.+.+ .++.+  ..+.++++|+.+++.+.. ++.+...   
T Consensus       250 ~~L~~l~l~~n-i~~I~~~aF~--------~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~---  315 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIGQRVFS--------NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDE---  315 (329)
T ss_dssp             TTCCEEECCTT-CCEECTTTTT--------TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC-CCEECTT---
T ss_pred             CCCCEEECCcc-cceehHHHhh--------CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc-cCccchh---
Confidence            99999999865 7776654433        789999 999988 45554  357889999999997653 6666442   


Q ss_pred             ccchhccccccccccCcceeec
Q 044468          299 GEISAEVMDNLILFGRLEYLIL  320 (396)
Q Consensus       299 ~~~~~~~~~~~~~~~~L~~L~l  320 (396)
                               ....+++|+.+..
T Consensus       316 ---------aF~~~~~L~~ly~  328 (329)
T 3sb4_A          316 ---------LFGNGVPSKLIYK  328 (329)
T ss_dssp             ---------TTCTTCCCCEEEC
T ss_pred             ---------hhcCCcchhhhcc
Confidence                     4456888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.23  E-value=1.6e-13  Score=115.70  Aligned_cols=127  Identities=26%  Similarity=0.278  Sum_probs=106.5

Q ss_pred             ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH   88 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~   88 (396)
                      .+..+++|++|++++|.+..++....+++|+.|++++|.+..+|.. +..+++|++|++++| .++.+| .+..+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence            5778899999999999999988338899999999999999988876 788899999999999 777776 5888999999


Q ss_pred             EEccCCCCCccch--hhhcCCcccEEecccccCCCCCCc---------chhcCCCcccEEE
Q 044468           89 LDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQ---------PVISDLKMLRALR  138 (396)
Q Consensus        89 L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~---------~~i~~l~~L~~L~  138 (396)
                      |++++|.++.++.  .+..+++|++|++++|.....+|.         .++..+++|+.|+
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999999997765  688999999999999855443322         2356677777775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.23  E-value=1.3e-09  Score=101.75  Aligned_cols=258  Identities=13%  Similarity=0.152  Sum_probs=174.0

Q ss_pred             CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccch-hhhcCCccc
Q 044468           33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLK  110 (396)
Q Consensus        33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~  110 (396)
                      ..+..++.+.+... +..++..+|..+ +|+.+.+..+  +..++ ..+.+ .+|+.+.+.. .++.++. .+.++++|+
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence            44677888887654 667777768775 7999998876  55554 34555 4799999986 5666654 478899999


Q ss_pred             EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhc
Q 044468          111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY  190 (396)
Q Consensus       111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  190 (396)
                      .+++..+ ....++...+. +++|+.+.+..+ +..+             ...++.++++|+.+.+..+ ...+..    
T Consensus       184 ~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~I-------------~~~aF~~~~~L~~l~l~~~-l~~I~~----  242 (401)
T 4fdw_A          184 KADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKEI-------------GSQAFLKTSQLKTIEIPEN-VSTIGQ----  242 (401)
T ss_dssp             EEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCEE-------------CTTTTTTCTTCCCEECCTT-CCEECT----
T ss_pred             eeecCCC-cceEechhhEe-ecccCEEEeCCc-hhee-------------hhhHhhCCCCCCEEecCCC-ccCccc----
Confidence            9999886 56667776455 689999999854 4442             4567788888888887643 222221    


Q ss_pred             cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc-----eeeeccccccccccccccccCcEeEEeCce
Q 044468          191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE-----ELNIDAGEVKRIRETRGFHSLQKVYINYSK  265 (396)
Q Consensus       191 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-----~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  265 (396)
                      ..+.+ .+|+.+.+.+  .++.....++.+|++|+.+.+..+.+.     .+.....        ..|++|+.+.+.++ 
T Consensus       243 ~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--------~~c~~L~~l~l~~~-  310 (401)
T 4fdw_A          243 EAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--------EGCPKLARFEIPES-  310 (401)
T ss_dssp             TTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT--------TTCTTCCEECCCTT-
T ss_pred             ccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh--------hCCccCCeEEeCCc-
Confidence            22334 4589998853  455555556889999999999855443     3333222        17899999999865 


Q ss_pred             eecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCC-CCCC-CCcce
Q 044468          266 FRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSS-YLPF-PRLKE  341 (396)
Q Consensus       266 l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~  341 (396)
                      ++.+  ..+.++++|+.+.|...  ++.+...            ....+ +|+.+.+.+. ....+... ...+ .+++.
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~------------aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~  374 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN--VTQINFS------------AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITV  374 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT--CCEECTT------------SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCE
T ss_pred             eEEEhhhhhcCCCCccEEEECcc--ccEEcHH------------hCCCC-CCCEEEEcCC-CCcccccccccCCCCCccE
Confidence            4443  35777999999999643  5665331            34557 9999999886 44444433 2224 36677


Q ss_pred             EEec
Q 044468          342 ICVW  345 (396)
Q Consensus       342 L~i~  345 (396)
                      |.+-
T Consensus       375 l~vp  378 (401)
T 4fdw_A          375 IRVP  378 (401)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            7664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.18  E-value=1.2e-10  Score=95.67  Aligned_cols=102  Identities=23%  Similarity=0.316  Sum_probs=49.0

Q ss_pred             cEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCCCCccchh-hhcCCcccEEeccc
Q 044468           39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY  116 (396)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~  116 (396)
                      +.++++++.+..+|.. +  .++|++|++++| .+..+ |..+.++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCC-c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3444555544444443 1  144555555555 33333 33444555555555555555544443 24555555555555


Q ss_pred             ccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468          117 TFCLSRIPQPVISDLKMLRALRMFECGFK  145 (396)
Q Consensus       117 ~~~~~~~~~~~i~~l~~L~~L~l~~~~~~  145 (396)
                      | .+..++...+..+++|++|++.+|.+.
T Consensus        91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            4 233344333555555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.17  E-value=1.6e-10  Score=94.59  Aligned_cols=102  Identities=25%  Similarity=0.341  Sum_probs=49.1

Q ss_pred             cEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCCCCccchh-hhcCCcccEEeccc
Q 044468           39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY  116 (396)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~  116 (396)
                      +.++++++.+..+|.. +  .++|++|++++| .+..+ |..+.++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus        12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCcc-C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3444444444444433 1  244555555555 33333 33344555555555555555544443 34555555555555


Q ss_pred             ccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468          117 TFCLSRIPQPVISDLKMLRALRMFECGFK  145 (396)
Q Consensus       117 ~~~~~~~~~~~i~~l~~L~~L~l~~~~~~  145 (396)
                      | .+..++...+..+++|++|++.+|.+.
T Consensus        88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4 233333333555555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.13  E-value=2.6e-10  Score=93.29  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEEccC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLDLSW   93 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~   93 (396)
                      ..++++++++.+..+|... .++|+.|++++|.+..+++..+..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence            4678999999998887642 378999999999998886665889999999999999 77777654 57899999999999


Q ss_pred             CCCCccchh-hhcCCcccEEecccccCCC
Q 044468           94 TGITTLPIE-LKYLVNLKCLNLEYTFCLS  121 (396)
Q Consensus        94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~  121 (396)
                      |.++.+|.. +.++++|++|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999988764 7889999999999985443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=3.2e-10  Score=93.12  Aligned_cols=103  Identities=20%  Similarity=0.279  Sum_probs=87.8

Q ss_pred             ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEEccCC
Q 044468           16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLDLSWT   94 (396)
Q Consensus        16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~~   94 (396)
                      -+.++++++.+..+|..- .++|+.|++++|.+..+++..+..+++|++|++++| .++.+|.. +.++++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence            478999999998888752 389999999999998886665899999999999999 78877754 578999999999999


Q ss_pred             CCCccchh-hhcCCcccEEecccccCC
Q 044468           95 GITTLPIE-LKYLVNLKCLNLEYTFCL  120 (396)
Q Consensus        95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~  120 (396)
                      .++.+|.. +.++++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99988876 888999999999998443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.86  E-value=1.8e-07  Score=87.20  Aligned_cols=38  Identities=11%  Similarity=0.198  Sum_probs=21.0

Q ss_pred             hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468          103 LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC  142 (396)
Q Consensus       103 l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~  142 (396)
                      +.++++|+.+.+..+  ...++...+..+.+|+.+.+..+
T Consensus       158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence            455666666666543  23344444566666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.85  E-value=8.7e-08  Score=89.36  Aligned_cols=282  Identities=12%  Similarity=0.079  Sum_probs=167.7

Q ss_pred             ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCC---------------
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR---------------   71 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------------   71 (396)
                      +|..|.+|+++.+..+ ++.++..  .+|.+|+.+.+..+ +..+...+|..+..|+.+.+..+-               
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred             HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence            5788999999999754 7777665  78999999999654 556666667777777765554320               


Q ss_pred             -----CCccc-cccccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468           72 -----SLENL-PLGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus        72 -----~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                           ....+ ...+.++.+|+.+.+..+ +..++. .+.++.+|+.+++..+  ...++...+.++..|+.+.+..+..
T Consensus       144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~  220 (394)
T 4fs7_A          144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY  220 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred             cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce
Confidence                 01111 134567889999999765 444443 3678899999998764  4445555578888888887765432


Q ss_pred             cchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccc
Q 044468          145 KVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHL  224 (396)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  224 (396)
                      .-               -........|+.+.+..... .+    ....+.++..++.+.+...  ........+..+..+
T Consensus       221 ~i---------------~~~~~~~~~l~~i~ip~~~~-~i----~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l  278 (394)
T 4fs7_A          221 YL---------------GDFALSKTGVKNIIIPDSFT-EL----GKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGL  278 (394)
T ss_dssp             EE---------------CTTTTTTCCCCEEEECTTCC-EE----CSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTC
T ss_pred             Ee---------------ehhhcccCCCceEEECCCce-ec----ccccccccccceeEEcCCC--cceeecccccccccc
Confidence            21               01112234566555432211 11    1133456666777777542  222232346666777


Q ss_pred             cceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC--CccCCCCCccEEeeccccccceeecccccccch
Q 044468          225 WTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEIS  302 (396)
Q Consensus       225 ~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  302 (396)
                      +.+......+.   ....        ..+.+|+.+.+..+ ++.+  ..+.++++|+.+.|.+  .++.+...       
T Consensus       279 ~~~~~~~~~i~---~~~F--------~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~-------  337 (394)
T 4fs7_A          279 KKVIYGSVIVP---EKTF--------YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKR-------  337 (394)
T ss_dssp             CEEEECSSEEC---TTTT--------TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTT-------
T ss_pred             ceeccCceeec---cccc--------cccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHH-------
Confidence            66655432211   1111        15778888887665 3332  3456678888887753  25555221       


Q ss_pred             hccccccccccCcceeeccCCcccccccCCC-CCCCCcceEEec
Q 044468          303 AEVMDNLILFGRLEYLILEGLQNLKSIHSSY-LPFPRLKEICVW  345 (396)
Q Consensus       303 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~  345 (396)
                           ....|.+|+.+.+...  ++.+.... ..+++|+++++.
T Consensus       338 -----aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          338 -----SFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             -----TTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred             -----hccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence                 3456778888877542  55554432 246778888774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=6.1e-10  Score=102.92  Aligned_cols=34  Identities=26%  Similarity=0.163  Sum_probs=15.0

Q ss_pred             CcCCEEEccCCCCCc-----cchhhhcCCcccEEecccc
Q 044468           84 VSLQHLDLSWTGITT-----LPIELKYLVNLKCLNLEYT  117 (396)
Q Consensus        84 ~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~  117 (396)
                      ++|++|++++|.++.     ++..+..+++|++|++++|
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N  193 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT  193 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence            445555555544431     2223344444555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.82  E-value=1.4e-08  Score=93.00  Aligned_cols=98  Identities=19%  Similarity=0.281  Sum_probs=46.6

Q ss_pred             EEcccc-ccccccCCCCCCCCcEEEccC-CccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCC
Q 044468           19 MSLMQN-AIQNLTETPTCPHLRALFLHS-NHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTG   95 (396)
Q Consensus        19 L~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~   95 (396)
                      ++.+++ ++..+|....+++|+.|++++ |.+..+++..|..+++|++|++++| .+..++ ..+.++++|++|+|++|.
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence            344444 454444434444555555553 5555444433555555555555555 333332 234455555555555555


Q ss_pred             CCccchhhhcCCcccEEecccc
Q 044468           96 ITTLPIELKYLVNLKCLNLEYT  117 (396)
Q Consensus        96 l~~l~~~l~~l~~L~~L~l~~~  117 (396)
                      ++.+|........|++|++.+|
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSS
T ss_pred             cceeCHHHcccCCceEEEeeCC
Confidence            5544443222222555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.81  E-value=1.5e-08  Score=92.89  Aligned_cols=94  Identities=24%  Similarity=0.258  Sum_probs=81.4

Q ss_pred             CCCCCCccCCCccccEEEccc-cccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468            3 GLTGAPRIGMWKEITRMSLMQ-NAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG   79 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~-~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~   79 (396)
                      +++.+|.+..+++|++|++++ |.+..++..  ..+++|+.|++++|.+..+++..|..+++|++|++++| .+..+|..
T Consensus        20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~   98 (347)
T 2ifg_A           20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK   98 (347)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred             CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence            678888888899999999996 999997753  89999999999999999888776899999999999999 88888765


Q ss_pred             ccCCCcCCEEEccCCCCC
Q 044468           80 ILNLVSLQHLDLSWTGIT   97 (396)
Q Consensus        80 l~~l~~L~~L~l~~~~l~   97 (396)
                      +.....|++|++.+|.+.
T Consensus        99 ~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             TTCSCCCCEEECCSSCCC
T ss_pred             HcccCCceEEEeeCCCcc
Confidence            444444999999999887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.81  E-value=1.4e-09  Score=100.52  Aligned_cols=132  Identities=23%  Similarity=0.285  Sum_probs=97.9

Q ss_pred             ccccEEEcccccccc--ccCC-CCCCCCcEEEccCCccCccChHHH-----hcCccccEEEeecCCCCcc-----ccccc
Q 044468           14 KEITRMSLMQNAIQN--LTET-PTCPHLRALFLHSNHLGTVSNNFF-----HSMASLRVLIFLYNRSLEN-----LPLGI   80 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~-----l~~~l   80 (396)
                      ++|++|++++|.+..  +... ..+++|+.|++++|.+.+.....+     ...++|++|++++| .++.     ++..+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence            688999999998865  3333 456789999999998864332212     35688999999999 6653     44455


Q ss_pred             cCCCcCCEEEccCCCCCc-----cchhhhcCCcccEEecccccCCCC----CCcchhcCCCcccEEEeeccCccch
Q 044468           81 LNLVSLQHLDLSWTGITT-----LPIELKYLVNLKCLNLEYTFCLSR----IPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus        81 ~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      ...++|++|++++|.++.     ++..+...++|++|++++|.+...    ++.. +...++|++|++++|.+...
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH-HHHCSSCCEEECTTSSCCHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH-HHhCCCCCEEeccCCCCCHH
Confidence            678999999999999873     355677888999999999854432    2222 45678999999999988763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.80  E-value=2.8e-07  Score=85.86  Aligned_cols=127  Identities=12%  Similarity=0.208  Sum_probs=85.9

Q ss_pred             ccCCCc-cccEEEccccccccccCC--CCCCCCcEEEccCC---ccCccChHHHhcCccccEEEeecCCCCcccc-cccc
Q 044468            9 RIGMWK-EITRMSLMQNAIQNLTET--PTCPHLRALFLHSN---HLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGIL   81 (396)
Q Consensus         9 ~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~   81 (396)
                      +|.+++ .|+++.+..+ ++.+...  .+|.+|+.+.+..+   .+..+...+|..+..|+.+.+..+  +..++ ..+.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence            466674 5899999764 7777665  78999999998766   356777777888888888776654  44443 4566


Q ss_pred             CCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468           82 NLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC  142 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~  142 (396)
                      ++.+|+.+.+... +..++. .+..+.+|+.+.+..+  ...+....+. ..+|+.+.+...
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~  192 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAK  192 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTT
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCc
Confidence            7888998888653 343333 3667788888887653  3444443243 356777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.71  E-value=1.6e-06  Score=80.70  Aligned_cols=113  Identities=10%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             cccccCC--CCCC-CCcEEEccCCccCccChHHHhcCccccEEEeecC--CCCcccc-ccccCCCcCCEEEccCCCCCcc
Q 044468           26 IQNLTET--PTCP-HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN--RSLENLP-LGILNLVSLQHLDLSWTGITTL   99 (396)
Q Consensus        26 ~~~l~~~--~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l   99 (396)
                      ++.+...  .+++ .|+.+.+... +..+...+|..|.+|+.+.+..+  ..++.+. ..+.++.+|+.+.+..+ ++.+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            4556554  4564 5898888654 67777777999999999998765  1244554 45667788888776543 5555


Q ss_pred             ch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468          100 PI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC  142 (396)
Q Consensus       100 ~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~  142 (396)
                      +. .+..+.+|+.+.+...  ...++...+..+.+|+.+.+..+
T Consensus       129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence            44 3678889999998753  44555555788899999888754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.58  E-value=1.8e-08  Score=81.62  Aligned_cols=90  Identities=11%  Similarity=-0.016  Sum_probs=54.7

Q ss_pred             ccceEEecccCCCcccchhhhhccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-eeec--CCccC
Q 044468          198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS-KFRH--ATWLV  273 (396)
Q Consensus       198 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--l~~l~  273 (396)
                      +|+.|++++|. +++..+..+.+|++|++|+++ |..+++.++......  + . .+++|++|+|++| ++|+  +..+.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~--~-~-~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL--E-N-LQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC--H-H-HHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc--c-c-ccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            37777777765 566666666667777777777 556666554332110  0 0 1346777777777 6666  44555


Q ss_pred             CCCCccEEeecccccccee
Q 044468          274 LAPRAKVIRISNCQRLQEI  292 (396)
Q Consensus       274 ~l~~L~~L~l~~~~~l~~~  292 (396)
                      .+++|++|++++|+.+++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCCEEECCCCCCCCch
Confidence            6677777777777665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.55  E-value=2.7e-07  Score=84.59  Aligned_cols=63  Identities=24%  Similarity=0.264  Sum_probs=41.0

Q ss_pred             cchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh--cCCCCcEEEE
Q 044468           99 LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL--ALKHLNLLTV  176 (396)
Q Consensus        99 l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l  176 (396)
                      +...+..+++|+.|++.++.. ..++.  +. +++|++|.+..+.+..             ..+..+.  .++.|+.|++
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~-l~l~~--~~-~~~L~~L~L~~~~l~~-------------~~l~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNN-LSIGK--KP-RPNLKSLEIISGGLPD-------------SVVEDILGSDLPNLEKLVL  226 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBT-CBCCS--CB-CTTCSEEEEECSBCCH-------------HHHHHHHHSBCTTCCEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCC-ceecc--cc-CCCCcEEEEecCCCCh-------------HHHHHHHHccCCCCcEEEE
Confidence            445567778888888877621 22332  32 7788888888777654             2444444  6788888887


Q ss_pred             Ee
Q 044468          177 TL  178 (396)
Q Consensus       177 ~~  178 (396)
                      ..
T Consensus       227 ~~  228 (362)
T 2ra8_A          227 YV  228 (362)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.55  E-value=2e-08  Score=81.32  Aligned_cols=90  Identities=12%  Similarity=0.048  Sum_probs=49.5

Q ss_pred             cCcEeEEeCceeec--CCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCC
Q 044468          255 SLQKVYINYSKFRH--ATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSS  332 (396)
Q Consensus       255 ~L~~L~l~~~~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  332 (396)
                      +|++|++++|.+++  +..+..+++|++|++++|..+++.....        +......+++|++|++++|++++.....
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--------L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--------LSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--------HHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--------HHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            46666666665444  4445566777777777776655441100        0000012346777777777666542221


Q ss_pred             -CCCCCCcceEEeccCccccc
Q 044468          333 -YLPFPRLKEICVWKCAELKK  352 (396)
Q Consensus       333 -~~~~~~L~~L~i~~c~~L~~  352 (396)
                       ...+++|++|++++|+++++
T Consensus       134 ~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCCC
T ss_pred             HHhcCCCCCEEECCCCCCCCc
Confidence             23467777777777776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.51  E-value=2.5e-07  Score=84.77  Aligned_cols=127  Identities=15%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             cccEEEccccccc---------cccCC-CCCCCCcEEEccCCccC----------ccChHHHhcCccccEEEeecCCCCc
Q 044468           15 EITRMSLMQNAIQ---------NLTET-PTCPHLRALFLHSNHLG----------TVSNNFFHSMASLRVLIFLYNRSLE   74 (396)
Q Consensus        15 ~L~~L~l~~~~~~---------~l~~~-~~~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~   74 (396)
                      .++.|.+....+.         .+... ..+++|+.|.+......          .+. .++..+++|+.|.++++... 
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-
Confidence            4566666654432         12222 45678888877544221          122 33677788888888776222 


Q ss_pred             cccccccCCCcCCEEEccCCCCC-ccchhhh--cCCcccEEecccc--cCCCC-----CCcchh--cCCCcccEEEeecc
Q 044468           75 NLPLGILNLVSLQHLDLSWTGIT-TLPIELK--YLVNLKCLNLEYT--FCLSR-----IPQPVI--SDLKMLRALRMFEC  142 (396)
Q Consensus        75 ~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~--~l~~L~~L~l~~~--~~~~~-----~~~~~i--~~l~~L~~L~l~~~  142 (396)
                      .++. + .+++|++|++..+.+. .....+.  .+++|++|+++.+  .....     +... +  ..+++|++|++.+|
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESC
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCC
Confidence            3333 3 2677888888777665 2112232  5777888776421  11111     1111 2  24677777777776


Q ss_pred             Cccc
Q 044468          143 GFKV  146 (396)
Q Consensus       143 ~~~~  146 (396)
                      .+..
T Consensus       263 ~i~~  266 (362)
T 2ra8_A          263 EEQN  266 (362)
T ss_dssp             TTHH
T ss_pred             CCch
Confidence            6553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.49  E-value=3.2e-05  Score=71.38  Aligned_cols=128  Identities=11%  Similarity=0.169  Sum_probs=75.7

Q ss_pred             CCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468            7 APRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV   84 (396)
Q Consensus         7 ~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~   84 (396)
                      .|.+....+|+++.+.. +++.++..  .+|.+|+.+.+..+ +..+...+|..+ .|+.+.+..+  +..+........
T Consensus        39 ~~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~  113 (379)
T 4h09_A           39 IPWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT  113 (379)
T ss_dssp             STTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC
T ss_pred             ccccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccC
Confidence            35566667888888864 36676665  77888888888654 666776667776 5776666543  444443222334


Q ss_pred             cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468           85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC  142 (396)
Q Consensus        85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~  142 (396)
                      +|+.+.+..+ +..+....-...+|+.+.+..+  ...+....+..+.+++.+.+...
T Consensus       114 ~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          114 DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred             CcccccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence            7888888654 3333322222234555555442  23333333666777777766654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=1e-06  Score=72.78  Aligned_cols=111  Identities=12%  Similarity=0.043  Sum_probs=79.8

Q ss_pred             CCCCCCcEEEccCC-ccCc-----cChHHHhcCccccEEEeecCCCCcc-----ccccccCCCcCCEEEccCCCCCc---
Q 044468           33 PTCPHLRALFLHSN-HLGT-----VSNNFFHSMASLRVLIFLYNRSLEN-----LPLGILNLVSLQHLDLSWTGITT---   98 (396)
Q Consensus        33 ~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~l~~l~~L~~L~l~~~~l~~---   98 (396)
                      ...+.|+.|++++| .+..     +... +...++|++|++++| .++.     +...+...++|++|++++|.++.   
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            67888999999988 7753     2333 667788999999998 5552     23344556789999999998873   


Q ss_pred             --cchhhhcCCcccEEec--ccccCCCC----CCcchhcCCCcccEEEeeccCccc
Q 044468           99 --LPIELKYLVNLKCLNL--EYTFCLSR----IPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        99 --l~~~l~~l~~L~~L~l--~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                        +...+...++|++|++  ++|.+...    +... +...++|++|++.+|.+..
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCCCh
Confidence              4566777888999999  66744332    2222 5566889999999987754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.19  E-value=0.00023  Score=65.62  Aligned_cols=260  Identities=13%  Similarity=0.089  Sum_probs=136.8

Q ss_pred             ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCc
Q 044468            9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVS   85 (396)
Q Consensus         9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~   85 (396)
                      +|..|.+|+++.+..+ ++.+...  .++ +|+.+.+..+ +..+...+|..+ +|+.+.+..+  +..+.. .+.+ .+
T Consensus        64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~--~~~i~~~~F~~-~~  136 (379)
T 4h09_A           64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA--TTEIGNYIFYN-SS  136 (379)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CC
T ss_pred             HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc--ccccccccccc-ce
Confidence            5888999999999754 7777665  556 6777776543 566666656654 7999998765  333332 2333 35


Q ss_pred             CCEEEccCCCCCccc-hhhhcCCcccEEecccccCCCC------------CCcchhcCCCcccEEEeeccCccchhccch
Q 044468           86 LQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSR------------IPQPVISDLKMLRALRMFECGFKVEQEADR  152 (396)
Q Consensus        86 L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~------------~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~  152 (396)
                      |+.+.+..+ ++.+. ..+..+.+++.+.+........            .... +.....+..+.+......       
T Consensus       137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------  207 (379)
T 4h09_A          137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES-YPAAKTGTEFTIPSTVKT-------  207 (379)
T ss_dssp             CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE-CCTTCCCSEEECCTTCCE-------
T ss_pred             eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc-ccccccccccccccceeE-------
Confidence            666665443 33332 2345667777766654311110            0011 222333333333322111       


Q ss_pred             hccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc
Q 044468          153 ILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN  232 (396)
Q Consensus       153 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  232 (396)
                             .....+.....|+...+...-. .+.    ...+.++..|+.+.+..  .++.....++.++.+|+.+.+. .
T Consensus       208 -------i~~~~f~~~~~l~~i~~~~~~~-~i~----~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~-~  272 (379)
T 4h09_A          208 -------VTAYGFSYGKNLKKITITSGVT-TLG----DGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFY-A  272 (379)
T ss_dssp             -------ECTTTTTTCSSCSEEECCTTCC-EEC----TTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEEC-C
T ss_pred             -------Eeecccccccccceeeecccee-EEc----cccccCCccceEEEcCC--CccEeCccccceeehhcccccc-c
Confidence                   1223344445555444322111 110    12344556677776643  2333333456667777777765 3


Q ss_pred             ccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCCCCccEEeeccccccceeecccccccchhccccccc
Q 044468          233 DFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLI  310 (396)
Q Consensus       233 ~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  310 (396)
                      .++.++.....        .|.+|+++.+.++.++.+.  .+.++++|+.+.|..  .++.+...            ...
T Consensus       273 ~i~~i~~~aF~--------~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~------------aF~  330 (379)
T 4h09_A          273 KVKTVPYLLCS--------GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVY------------AFK  330 (379)
T ss_dssp             CCSEECTTTTT--------TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT------------TTT
T ss_pred             cceeccccccc--------cccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHH------------Hhh
Confidence            34444332221        5777888877766555543  356677777777753  24444221            334


Q ss_pred             cccCcceeecc
Q 044468          311 LFGRLEYLILE  321 (396)
Q Consensus       311 ~~~~L~~L~l~  321 (396)
                      .|.+|+.+.+.
T Consensus       331 ~C~~L~~i~ip  341 (379)
T 4h09_A          331 NCKALSTISYP  341 (379)
T ss_dssp             TCTTCCCCCCC
T ss_pred             CCCCCCEEEEC
Confidence            56667766664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.09  E-value=2.3e-06  Score=70.58  Aligned_cols=117  Identities=15%  Similarity=0.060  Sum_probs=73.4

Q ss_pred             HhcCccccEEEeecCCCCc-----cccccccCCCcCCEEEccCCCCC-----ccchhhhcCCcccEEecccccCCCC---
Q 044468           56 FHSMASLRVLIFLYNRSLE-----NLPLGILNLVSLQHLDLSWTGIT-----TLPIELKYLVNLKCLNLEYTFCLSR---  122 (396)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~~~~---  122 (396)
                      +...+.|++|++++|..++     .+...+...++|++|++++|.+.     .+...+...++|++|++++|.+...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            6677888888888873333     23344556678888888888876     2344556667788888888744332   


Q ss_pred             -CCcchhcCCCcccEEEe--eccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc
Q 044468          123 -IPQPVISDLKMLRALRM--FECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG  182 (396)
Q Consensus       123 -~~~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  182 (396)
                       +... +...++|++|++  .+|.+...         +.......+...+.|+.|++..+...
T Consensus       112 ~l~~~-L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEA-LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHG-GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH-HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             2233 556677888888  66766542         11123445555677777776665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=2.7e-06  Score=74.08  Aligned_cols=80  Identities=20%  Similarity=0.145  Sum_probs=39.9

Q ss_pred             hcCccccEEEeecCCCCccc---cccccCCCcCCEEEccCCCCCccchhhhcCC--cccEEecccccCCCCCC------c
Q 044468           57 HSMASLRVLIFLYNRSLENL---PLGILNLVSLQHLDLSWTGITTLPIELKYLV--NLKCLNLEYTFCLSRIP------Q  125 (396)
Q Consensus        57 ~~l~~L~~L~l~~~~~~~~l---~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~--~L~~L~l~~~~~~~~~~------~  125 (396)
                      ..+++|++|++++| .+..+   |..+..+++|++|+|++|.++.+. .+..+.  +|++|++.+|.....+|      .
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            34556666666666 44332   233345566666666666555442 223333  56666666654443333      1


Q ss_pred             chhcCCCcccEEE
Q 044468          126 PVISDLKMLRALR  138 (396)
Q Consensus       126 ~~i~~l~~L~~L~  138 (396)
                      .++..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2244556666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.76  E-value=2.2e-05  Score=68.34  Aligned_cols=110  Identities=19%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             HhcCccccE--EEeecCCCCcccccc----ccCCCcCCEEEccCCCCCccc---hhhhcCCcccEEecccccCCCCCCcc
Q 044468           56 FHSMASLRV--LIFLYNRSLENLPLG----ILNLVSLQHLDLSWTGITTLP---IELKYLVNLKCLNLEYTFCLSRIPQP  126 (396)
Q Consensus        56 ~~~l~~L~~--L~l~~~~~~~~l~~~----l~~l~~L~~L~l~~~~l~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~  126 (396)
                      +...+.|+.  ++++.| ....++..    ..++++|+.|+|++|.++.++   ..+..+++|++|++++|.+ ..+.. 
T Consensus       137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~-  213 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERE-  213 (267)
T ss_dssp             GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGG-
T ss_pred             cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchh-
Confidence            445555555  556666 33333321    246889999999999887544   5567899999999999844 33321 


Q ss_pred             hhcCCC--cccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468          127 VISDLK--MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT  175 (396)
Q Consensus       127 ~i~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  175 (396)
                       +..+.  +|++|.+.+|.+...     +. ....-....+..+++|+.|+
T Consensus       214 -l~~l~~l~L~~L~L~~Npl~~~-----~~-~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          214 -LDKIKGLKLEELWLDGNSLCDT-----FR-DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             -GGGGTTSCCSEEECTTSTTGGG-----CS-SHHHHHHHHHHHCTTCCEES
T ss_pred             -hhhcccCCcceEEccCCcCccc-----cC-cchhHHHHHHHHCcccCeEC
Confidence             33343  899999999987641     00 00001234567777888665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.96  E-value=0.0083  Score=49.26  Aligned_cols=16  Identities=6%  Similarity=0.038  Sum_probs=7.7

Q ss_pred             hHhhhcCCCCcEEEEE
Q 044468          162 VEELLALKHLNLLTVT  177 (396)
Q Consensus       162 ~~~l~~l~~L~~L~l~  177 (396)
                      ...+..-+.|..|++.
T Consensus       150 a~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          150 MMAIEENESLLRVGIS  165 (197)
T ss_dssp             HHHHHHCSSCCEEECC
T ss_pred             HHHHHhCCCcCeEecc
Confidence            3344444555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.93  E-value=0.012  Score=48.20  Aligned_cols=109  Identities=10%  Similarity=0.031  Sum_probs=74.3

Q ss_pred             CCCCCCcEEEccCC-ccCc-----cChHHHhcCccccEEEeecCCCCc-----cccccccCCCcCCEEEccCCCCC----
Q 044468           33 PTCPHLRALFLHSN-HLGT-----VSNNFFHSMASLRVLIFLYNRSLE-----NLPLGILNLVSLQHLDLSWTGIT----   97 (396)
Q Consensus        33 ~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~l~----   97 (396)
                      .+-+.|+.|+++++ .+.+     +... +..-..|+.|++++| .++     .+...+..-..|++|+|++|.++    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            56778999999885 6642     3233 666788999999999 665     22233445578999999999887    


Q ss_pred             -ccchhhhcCCcccEEecccccC--CCC-----CCcchhcCCCcccEEEeeccCc
Q 044468           98 -TLPIELKYLVNLKCLNLEYTFC--LSR-----IPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus        98 -~l~~~l~~l~~L~~L~l~~~~~--~~~-----~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                       .+-..+..-+.|++|+++++..  .+.     +... +..-+.|+.|++..+..
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCc
Confidence             3444566667799999986521  121     2222 45567899999886653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.38  E-value=0.028  Score=42.80  Aligned_cols=52  Identities=15%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             EEEccccccc--cccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecC
Q 044468           18 RMSLMQNAIQ--NLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN   70 (396)
Q Consensus        18 ~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   70 (396)
                      +++.++++++  .+|.. --++|+.|++++|.+..++.+.|..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4555556555  45532 1224666666666666666665666666666666666

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.33  E-value=0.036  Score=42.17  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=18.2

Q ss_pred             cccEEecccccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468          108 NLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                      +|++|++++| .+..++.+++..+++|+.|++.+|.+
T Consensus        32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence            3555555554 34444444455555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	396
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 17/270 (6%)

Query: 27  QNLTETPTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV 84
             L + P    P    L L +N +  + +  F ++ +L  LI + N+  +  P     LV
Sbjct: 20  LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 85  SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF 144
            L+ L LS   +  LP ++   +        +   ++++ + V + L  +  + +     
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 145 KVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSL-- 202
           K     +    G  ++     + +   N+ T+   +  +L  L    N    ++  SL  
Sbjct: 137 KSSGIENGAFQGMKKL---SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193

Query: 203 --CLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVY 260
              L  L  S    +                +       +   VK          +Q VY
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN-----NNKLVKVPGGLADHKYIQVVY 248

Query: 261 INYSKFRHATWLVLAPRAKVIRISNCQRLQ 290
           ++ +           P     + ++   + 
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVS 278

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           ++    +     +T + L +N +++++      +L  L L+ N++  +S     S+  L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116
            L F  N  + ++   + NL ++  L      I+ L   L  L  +  L L  
Sbjct: 333 RL-FFANNKVSDVS-SLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 4   LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLR 63
           ++    +    ++T + L  N I N++       L  L L+ N       +   ++ +L 
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ--LEDISPISNLKNLT 310

Query: 64  VLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRI 123
            L   +N   +  P+   +L  LQ L  +   ++ +   L  L N+  L+  +       
Sbjct: 311 YLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLT 367

Query: 124 PQPVISDLKMLRALRM 139
           P   +++L  +  L +
Sbjct: 368 P---LANLTRITQLGL 380

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 28/183 (15%), Positives = 44/183 (24%), Gaps = 5/183 (2%)

Query: 70  NRSLENLPLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVI 128
            R+L  LP  +        L LS   + T  +  L     L  LNL+            +
Sbjct: 19  KRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 129 SDL--KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQR 186
             L    L   ++       +      +   S   +  L       L  +        + 
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 187 LLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKR 246
                                NN   L A     L +L TL L  N    +         
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196

Query: 247 IRE 249
           +  
Sbjct: 197 LPF 199

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 16/118 (13%), Positives = 28/118 (23%)

Query: 12  MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
                           + +              + +             +L  L    NR
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVIS 129
               LP G+  L  L  L++S+  +     +   L            CL   P P  +
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 9/124 (7%)

Query: 12  MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR 71
           +         +     +         L     + N       +      SL  L    N+
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295

Query: 72  SLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDL 131
            L  LP     L   + L  S+  +  +P   +   NLK L++EY   L   P  +   +
Sbjct: 296 -LIELPALPPRL---ERLIASFNHLAEVPELPQ---NLKQLHVEYN-PLREFP-DIPESV 346

Query: 132 KMLR 135
           + LR
Sbjct: 347 EDLR 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	396
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.39
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.29
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.77

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=4.7e-22  Score=183.62  Aligned_cols=299  Identities=15%  Similarity=0.150  Sum_probs=201.6

Q ss_pred             cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEE
Q 044468           10 IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHL   89 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L   89 (396)
                      ...+.+|++|++++++++++.....+++|++|++++|.+.++++  ++.+++|++|++++| .+..++. ++++++|+.|
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L  115 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGL  115 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEE
T ss_pred             HHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc-ccccccc-cccccccccc
Confidence            44567899999999999988666889999999999999998875  899999999999999 6766654 7899999999


Q ss_pred             EccCCCCCccchhhhcCCcccEEeccccc-----------------------------------------CCCCCCcchh
Q 044468           90 DLSWTGITTLPIELKYLVNLKCLNLEYTF-----------------------------------------CLSRIPQPVI  128 (396)
Q Consensus        90 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~-----------------------------------------~~~~~~~~~i  128 (396)
                      +++++.++.++... ....+.......+.                                         ....... ..
T Consensus       116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  193 (384)
T d2omza2         116 TLFNNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VL  193 (384)
T ss_dssp             ECCSSCCCCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc-cc
Confidence            99988776544321 12222222211100                                         0011112 25


Q ss_pred             cCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccC
Q 044468          129 SDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN  208 (396)
Q Consensus       129 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  208 (396)
                      ..+++++.+.+.++.+...               ......++|+.+++.++....++.      +..+++|+.|.+.++.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~---------------~~~~~~~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~  252 (384)
T d2omza2         194 AKLTNLESLIATNNQISDI---------------TPLGILTNLDELSLNGNQLKDIGT------LASLTNLTDLDLANNQ  252 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCC---------------GGGGGCTTCCEEECCSSCCCCCGG------GGGCTTCSEEECCSSC
T ss_pred             ccccccceeeccCCccCCC---------------CcccccCCCCEEECCCCCCCCcch------hhcccccchhccccCc
Confidence            6678888888888876653               234566788888888877665543      3345558888887754


Q ss_pred             CCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccc
Q 044468          209 NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQR  288 (396)
Q Consensus       209 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~  288 (396)
                      - ...  ..+..+++|+.|+++++.+..+..         - ..++.++.+.+.+|.++.+..+..++++++|+++++. 
T Consensus       253 l-~~~--~~~~~~~~L~~L~l~~~~l~~~~~---------~-~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~-  318 (384)
T d2omza2         253 I-SNL--APLSGLTKLTELKLGANQISNISP---------L-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-  318 (384)
T ss_dssp             C-CCC--GGGTTCTTCSEEECCSSCCCCCGG---------G-TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-
T ss_pred             c-CCC--CcccccccCCEeeccCcccCCCCc---------c-ccccccccccccccccccccccchhcccCeEECCCCC-
Confidence            3 222  236777888888888766654321         0 1567777777777777777667777888888887764 


Q ss_pred             cceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEe
Q 044468          289 LQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIK  368 (396)
Q Consensus       289 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~  368 (396)
                      ++++.              .+..+++|++|++++| .++.++ ....+++|+.|++.+| +++.+|+  ....+.++.+.
T Consensus       319 l~~l~--------------~l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         319 ISDIS--------------PVSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CSCCG--------------GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEE
T ss_pred             CCCCc--------------ccccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEee
Confidence            44442              2456778888888877 466554 2455788888888776 5777764  23334555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=1.4e-21  Score=180.37  Aligned_cols=287  Identities=17%  Similarity=0.218  Sum_probs=209.3

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      .++++++.++.+++|++|++++|.++.++....+++|++|++++|.+..+++  +..+++|+.|+++++ ....++.. .
T Consensus        54 ~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~-~~~~~~~~-~  129 (384)
T d2omza2          54 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDPL-K  129 (384)
T ss_dssp             SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGGG-T
T ss_pred             CCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc--ccccccccccccccc-cccccccc-c
Confidence            4567777888999999999999999998877899999999999999988765  899999999999988 54433221 1


Q ss_pred             CCCcCCEEEccCCC------------------------------------------CCccchhhhcCCcccEEecccccC
Q 044468           82 NLVSLQHLDLSWTG------------------------------------------ITTLPIELKYLVNLKCLNLEYTFC  119 (396)
Q Consensus        82 ~l~~L~~L~l~~~~------------------------------------------l~~l~~~l~~l~~L~~L~l~~~~~  119 (396)
                      ....+.......+.                                          ..........+++++.+++.++. 
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-  208 (384)
T d2omza2         130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-  208 (384)
T ss_dssp             TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCc-
Confidence            12222222221110                                          01122345678889999999874 


Q ss_pred             CCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCccc
Q 044468          120 LSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINT  199 (396)
Q Consensus       120 ~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L  199 (396)
                      ...++.  ...+++|++|++.+|.+...               ..+..+++|+.+++..+.......      +..+++|
T Consensus       209 i~~~~~--~~~~~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~~L  265 (384)
T d2omza2         209 ISDITP--LGILTNLDELSLNGNQLKDI---------------GTLASLTNLTDLDLANNQISNLAP------LSGLTKL  265 (384)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTC
T ss_pred             cCCCCc--ccccCCCCEEECCCCCCCCc---------------chhhcccccchhccccCccCCCCc------ccccccC
Confidence            344433  56778999999999987653               457778899999988887765543      4456669


Q ss_pred             ceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCccCCCCCcc
Q 044468          200 QSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAK  279 (396)
Q Consensus       200 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~  279 (396)
                      +.|.++++.-...   ..+..++.++.+.+..+.++.+..  .        ..++++++|++++|++++++++..+++|+
T Consensus       266 ~~L~l~~~~l~~~---~~~~~~~~l~~l~~~~n~l~~~~~--~--------~~~~~l~~L~ls~n~l~~l~~l~~l~~L~  332 (384)
T d2omza2         266 TELKLGANQISNI---SPLAGLTALTNLELNENQLEDISP--I--------SNLKNLTYLTLYFNNISDISPVSSLTKLQ  332 (384)
T ss_dssp             SEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCSCCGG--G--------GGCTTCSEEECCSSCCSCCGGGGGCTTCC
T ss_pred             CEeeccCcccCCC---Cccccccccccccccccccccccc--c--------chhcccCeEECCCCCCCCCcccccCCCCC
Confidence            9999976543222   236677888888888776664321  1        17899999999999888888888899999


Q ss_pred             EEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEecc
Q 044468          280 VIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWK  346 (396)
Q Consensus       280 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~  346 (396)
                      +|++++|. ++++.              .+..+++|++|+++++ .+..++. ...+++|+.|++++
T Consensus       333 ~L~L~~n~-l~~l~--------------~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         333 RLFFANNK-VSDVS--------------SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             EEECCSSC-CCCCG--------------GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCC
T ss_pred             EEECCCCC-CCCCh--------------hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCC
Confidence            99999985 66552              3456899999999888 5776653 55689999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=6.1e-20  Score=164.03  Aligned_cols=285  Identities=16%  Similarity=0.171  Sum_probs=207.7

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW   93 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~   93 (396)
                      ..+.++-++.+++.+|.. -.+++++|++++|.+.++++..|.++++|++|+++++ .+..+ |..+.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccC
Confidence            567788888888888774 2368999999999999998766899999999999999 55555 56788999999999999


Q ss_pred             CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      |.++.+|..  ....++.|++..+ ....++...+.....++.+....+.....           ......+..+++|+.
T Consensus        89 n~l~~l~~~--~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-----------~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          89 NQLKELPEK--MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMKKLSY  154 (305)
T ss_dssp             SCCSBCCSS--CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCTTCCE
T ss_pred             CccCcCccc--hhhhhhhhhcccc-chhhhhhhhhhcccccccccccccccccc-----------CCCccccccccccCc
Confidence            999988864  3467889998887 44556655467778888888777654431           223456778888998


Q ss_pred             EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468          174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF  253 (396)
Q Consensus       174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~  253 (396)
                      +++..+....++.       ...++|+.|++.++..... ....+.+++.++.|+++.+.++.+......        .+
T Consensus       155 l~l~~n~l~~l~~-------~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~--------~l  218 (305)
T d1xkua_         155 IRIADTNITTIPQ-------GLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NT  218 (305)
T ss_dssp             EECCSSCCCSCCS-------SCCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGG--------GS
T ss_pred             cccccCCccccCc-------ccCCccCEEECCCCcCCCC-ChhHhhcccccccccccccccccccccccc--------cc
Confidence            8888776654331       1245688999987554333 334577888999999998888876543332        68


Q ss_pred             ccCcEeEEeCceeecCC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCC
Q 044468          254 HSLQKVYINYSKFRHAT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSS  332 (396)
Q Consensus       254 ~~L~~L~l~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  332 (396)
                      ++|++|++++|.++.++ .+..+++|++|+++++. ++.+....|....      .....++|+.|++.+++ ++.++..
T Consensus       219 ~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~------~~~~~~~L~~L~L~~N~-~~~~~~~  290 (305)
T d1xkua_         219 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG------YNTKKASYSGVSLFSNP-VQYWEIQ  290 (305)
T ss_dssp             TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS------CCTTSCCCSEEECCSSS-SCGGGSC
T ss_pred             ccceeeecccccccccccccccccCCCEEECCCCc-cCccChhhccCcc------hhcccCCCCEEECCCCc-CccCcCC
Confidence            89999999999888875 47779999999999874 7777554443321      34456788888888875 5545555


Q ss_pred             CCCCCCc
Q 044468          333 YLPFPRL  339 (396)
Q Consensus       333 ~~~~~~L  339 (396)
                      ..+|+.+
T Consensus       291 ~~~f~~~  297 (305)
T d1xkua_         291 PSTFRCV  297 (305)
T ss_dssp             GGGGTTC
T ss_pred             HhHhccc
Confidence            5455443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.80  E-value=1.1e-19  Score=162.99  Aligned_cols=251  Identities=15%  Similarity=0.092  Sum_probs=149.0

Q ss_pred             CCCcEEEccCCccC---ccChHHHhcCccccEEEeec-CCCCccccccccCCCcCCEEEccCCCCCcc-chhhhcCCccc
Q 044468           36 PHLRALFLHSNHLG---TVSNNFFHSMASLRVLIFLY-NRSLENLPLGILNLVSLQHLDLSWTGITTL-PIELKYLVNLK  110 (396)
Q Consensus        36 ~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~  110 (396)
                      .+++.|+++++.+.   .+|++ +.++++|++|++++ |...+.+|..++++++|++|++++|.+..+ +..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            35667777776553   45665 67777777777765 323336677777777777777777766633 34466677777


Q ss_pred             EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC-cEEEEEecccchhhhhhh
Q 044468          111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL-NLLTVTLQIFGALQRLLN  189 (396)
Q Consensus       111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~  189 (396)
                      ++++.+|.....+|.. ++.+++++++++.+|.+.+.             ....+..+..+ +.+.+..+.......   
T Consensus       129 ~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~-------------ip~~~~~l~~l~~~l~~~~n~l~~~~~---  191 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA-------------IPDSYGSFSKLFTSMTISRNRLTGKIP---  191 (313)
T ss_dssp             EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE-------------CCGGGGCCCTTCCEEECCSSEEEEECC---
T ss_pred             ccccccccccccCchh-hccCcccceeeccccccccc-------------ccccccccccccccccccccccccccc---
Confidence            7777776666666665 67777777777777766542             33444445444 445544444322110   


Q ss_pred             ccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec-
Q 044468          190 YCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH-  268 (396)
Q Consensus       190 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-  268 (396)
                       ..+.+.. ...+.+.++..... ....+..+++++.+++..+.+..         .++.-+.+++|++|++++|+++. 
T Consensus       192 -~~~~~l~-~~~l~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~l~~---------~~~~~~~~~~L~~L~Ls~N~l~g~  259 (313)
T d1ogqa_         192 -PTFANLN-LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAF---------DLGKVGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             -GGGGGCC-CSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSEECC---------BGGGCCCCTTCCEEECCSSCCEEC
T ss_pred             -ccccccc-cccccccccccccc-ccccccccccccccccccccccc---------cccccccccccccccCccCeeccc
Confidence             0011111 22344443221111 11224556778888877555542         12221267888889988887774 


Q ss_pred             CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccccccc
Q 044468          269 AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIH  330 (396)
Q Consensus       269 l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  330 (396)
                      +| .++++++|++|+++++. ++.-+.             ....+++|+.+.+.+++.+...|
T Consensus       260 iP~~l~~L~~L~~L~Ls~N~-l~g~iP-------------~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         260 LPQGLTQLKFLHSLNVSFNN-LCGEIP-------------QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSE-EEEECC-------------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             CChHHhCCCCCCEEECcCCc-ccccCC-------------CcccCCCCCHHHhCCCccccCCC
Confidence            54 47788889999998875 442222             23467888888888887666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.7e-17  Score=147.83  Aligned_cols=103  Identities=25%  Similarity=0.274  Sum_probs=81.7

Q ss_pred             CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEec
Q 044468           37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNL  114 (396)
Q Consensus        37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l  114 (396)
                      ..+.++.++..+.++|.. +  .+++++|++++| .++.+|. .+.++++|++|++++|.+..+ |..+.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~-l--~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS-C--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCC-C--CCCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            567788888888888876 3  367999999999 8888875 688999999999999988876 456889999999999


Q ss_pred             ccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468          115 EYTFCLSRIPQPVISDLKMLRALRMFECGFKVE  147 (396)
Q Consensus       115 ~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~  147 (396)
                      .+| ....+|..   ....++.|....+.+...
T Consensus        87 ~~n-~l~~l~~~---~~~~l~~L~~~~n~l~~l  115 (305)
T d1xkua_          87 SKN-QLKELPEK---MPKTLQELRVHENEITKV  115 (305)
T ss_dssp             CSS-CCSBCCSS---CCTTCCEEECCSSCCCBB
T ss_pred             cCC-ccCcCccc---hhhhhhhhhccccchhhh
Confidence            998 45556643   345788888888877653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=1.4e-18  Score=155.72  Aligned_cols=241  Identities=15%  Similarity=0.186  Sum_probs=113.1

Q ss_pred             cccEEEcccccccc---ccCC-CCCCCCcEEEccC-CccC-ccChHHHhcCccccEEEeecCCCCc-cccccccCCCcCC
Q 044468           15 EITRMSLMQNAIQN---LTET-PTCPHLRALFLHS-NHLG-TVSNNFFHSMASLRVLIFLYNRSLE-NLPLGILNLVSLQ   87 (396)
Q Consensus        15 ~L~~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~   87 (396)
                      +++.|+++++.+.+   +|.. .++++|++|++++ |.+. .+|.. +.++++|++|++++| .+. ..+..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccc-cccccccccccchhhhc
Confidence            35555565555543   3344 5555666666554 3332 45555 555666666666655 333 2233445555566


Q ss_pred             EEEccCCCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcc-cEEEeeccCccchhccchhccCCchhhhHhh
Q 044468           88 HLDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML-RALRMFECGFKVEQEADRILFGDSEVLVEEL  165 (396)
Q Consensus        88 ~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (396)
                      ++++++|.+. .+|..+.++++|+++++++|...+.+|.. +..+.++ +.+.+..+.+.+.             ....+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~-------------~~~~~  194 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK-------------IPPTF  194 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE-------------CCGGG
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccccc-------------ccccc
Confidence            6666555333 45555555566666666555444445544 4444433 5555555554442             22333


Q ss_pred             hcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccc
Q 044468          166 LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK  245 (396)
Q Consensus       166 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~  245 (396)
                      ..+..+ .+++..+.......    .....+++++.+.+.++......  ..+..+++|+.|+++.|+++         |
T Consensus       195 ~~l~~~-~l~l~~~~~~~~~~----~~~~~~~~l~~l~~~~~~l~~~~--~~~~~~~~L~~L~Ls~N~l~---------g  258 (313)
T d1ogqa_         195 ANLNLA-FVDLSRNMLEGDAS----VLFGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIY---------G  258 (313)
T ss_dssp             GGCCCS-EEECCSSEEEECCG----GGCCTTSCCSEEECCSSEECCBG--GGCCCCTTCCEEECCSSCCE---------E
T ss_pred             cccccc-cccccccccccccc----ccccccccccccccccccccccc--cccccccccccccCccCeec---------c
Confidence            333322 23333222211100    11223334555555443221111  12344455555555555554         2


Q ss_pred             ccccc-cccccCcEeEEeCceee-cCCccCCCCCccEEeecccc
Q 044468          246 RIRET-RGFHSLQKVYINYSKFR-HATWLVLAPRAKVIRISNCQ  287 (396)
Q Consensus       246 ~~~~~-~~~~~L~~L~l~~~~l~-~l~~l~~l~~L~~L~l~~~~  287 (396)
                      .+|+. +.+++|++|+|++|+++ .+|.++.+++|+.+++++++
T Consensus       259 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            22222 24555666666655555 35555555555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.4e-17  Score=142.84  Aligned_cols=132  Identities=21%  Similarity=0.188  Sum_probs=104.1

Q ss_pred             CCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEE
Q 044468           11 GMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLD   90 (396)
Q Consensus        11 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~   90 (396)
                      .+...+.+++.++++++.+|..- -+++++|++++|.+..++...|..+++|++|++++| .++.++. ++.+++|++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEE
T ss_pred             cccCCCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccc
Confidence            34556777888888888887541 157899999999998888766889999999999999 7777764 56789999999


Q ss_pred             ccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      +++|.++..+..+.++++|++|+++++. ...++...+..+.++++|.+.+|.+..
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             cccccccccccccccccccccccccccc-cceeeccccccccccccccccccccce
Confidence            9999888888788888999999998874 444454447778888888888876655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.9e-17  Score=140.51  Aligned_cols=182  Identities=23%  Similarity=0.225  Sum_probs=148.0

Q ss_pred             CCCCCCCc-cCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc
Q 044468            2 AGLTGAPR-IGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL   78 (396)
Q Consensus         2 ~~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~   78 (396)
                      .+++.+|. +.  +++++|++++|.++.++..  .++++|+.|++++|.+..++.  +..+++|++|++++| .+...+.
T Consensus        20 ~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N-~l~~~~~   94 (266)
T d1p9ag_          20 RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-QLQSLPL   94 (266)
T ss_dssp             SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-CCSSCCC
T ss_pred             CCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccccc-ccccccc
Confidence            46777763 32  5899999999999997654  789999999999999988875  678999999999999 7887788


Q ss_pred             cccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468           79 GILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD  157 (396)
Q Consensus        79 ~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  157 (396)
                      .+.++++|++|+++++.+..++. .+..+.++++|++.+| ....++...+..+++++.+++.+|.++..          
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~----------  163 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL----------  163 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC----------
T ss_pred             ccccccccccccccccccceeecccccccccccccccccc-ccceeccccccccccchhccccccccccc----------
Confidence            88899999999999998886654 4678899999999998 56667766688899999999999998874          


Q ss_pred             chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468          158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL  207 (396)
Q Consensus       158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  207 (396)
                         ....+..+++|+.|++.++.+..++.     .+...++|+.|++.+.
T Consensus       164 ---~~~~~~~l~~L~~L~Ls~N~L~~lp~-----~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         164 ---PAGLLNGLENLDTLLLQENSLYTIPK-----GFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCCCSEEECCSC
T ss_pred             ---CccccccccccceeecccCCCcccCh-----hHCCCCCCCEEEecCC
Confidence               45567888999999998888766542     2334455777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=1.3e-15  Score=137.87  Aligned_cols=273  Identities=21%  Similarity=0.160  Sum_probs=160.2

Q ss_pred             ccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccC
Q 044468           14 KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSW   93 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~   93 (396)
                      .++++|++++++++.+|+  ..++|++|++++|.+.++|..    +.+|+.|++.++ .+..++..   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhc-ccchhhhh---ccccccccccc
Confidence            468899999999988875  457899999999999888753    467899999998 66666531   24699999999


Q ss_pred             CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468           94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL  173 (396)
Q Consensus        94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  173 (396)
                      |.+..+|. ..++++|++|++.++.. ...+.    ....+..+.+..+....               ...+..++.++.
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~~-~~~~~----~~~~l~~l~~~~~~~~~---------------~~~l~~l~~l~~  166 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNSL-KKLPD----LPPSLEFIAAGNNQLEE---------------LPELQNLPFLTA  166 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSS---------------CCCCTTCTTCCE
T ss_pred             cccccccc-hhhhccceeeccccccc-ccccc----ccccccchhhccccccc---------------ccccccccccee
Confidence            99988885 57889999999988733 33222    23445555554443322               123334445555


Q ss_pred             EEEEecccchhhhh--------------hhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeee
Q 044468          174 LTVTLQIFGALQRL--------------LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI  239 (396)
Q Consensus       174 L~l~~~~~~~~~~~--------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~  239 (396)
                      +.+..+........              ........++.++.+.+.++......     ....++..+.+..+.+.....
T Consensus       167 L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-----~~~~~l~~~~~~~~~~~~~~~  241 (353)
T d1jl5a_         167 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-----DLPPSLEALNVRDNYLTDLPE  241 (353)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-----SCCTTCCEEECCSSCCSCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccc
Confidence            55444333221110              00112233344555555443221111     112233333333222221100


Q ss_pred             ccccccccccccccccCcEeEE--------------------eCceeecCCccCCCCCccEEeeccccccceeecccccc
Q 044468          240 DAGEVKRIRETRGFHSLQKVYI--------------------NYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLG  299 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~L~l--------------------~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  299 (396)
                                  ..+.+....+                    ..+.++.+  ...+++|++|++++|. ++++.      
T Consensus       242 ------------~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~L~~L~Ls~N~-l~~lp------  300 (353)
T d1jl5a_         242 ------------LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNK-LIELP------  300 (353)
T ss_dssp             ------------CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE--CCCCTTCCEEECCSSC-CSCCC------
T ss_pred             ------------ccccccccccccccccccccccchhcccccccCccccc--cccCCCCCEEECCCCc-cCccc------
Confidence                        1122222222                    22222221  1236889999999885 55553      


Q ss_pred             cchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCC
Q 044468          300 EISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCN  358 (396)
Q Consensus       300 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~  358 (396)
                                ..+++|+.|++++| .++.++.   .+++|++|++++|+ ++++|..+.
T Consensus       301 ----------~~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~~~  344 (353)
T d1jl5a_         301 ----------ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIPE  344 (353)
T ss_dssp             ----------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCCT
T ss_pred             ----------cccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCcccc
Confidence                      24789999999888 5777753   35789999999986 999987543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.5e-16  Score=137.75  Aligned_cols=221  Identities=20%  Similarity=0.235  Sum_probs=116.8

Q ss_pred             EEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC-CC
Q 044468           19 MSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT-GI   96 (396)
Q Consensus        19 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~-~l   96 (396)
                      +..++.+++.+|.. -.+.+++|++++|.+..++...|..+++|++|+++++ .+..++ ..+.++..++.+..... .+
T Consensus        16 v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccccccccccccccccccccccc
Confidence            34444445555432 1134556666666665555544556666666666665 444333 23344555555555433 44


Q ss_pred             Ccc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468           97 TTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT  175 (396)
Q Consensus        97 ~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  175 (396)
                      +.+ +..+.++++|++|++.+|. ...++...++.+++|+.+++.++.++..             ....+..+++|+.|+
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i-------------~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQAL-------------PDDTFRDLGNLTHLF  159 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEE
T ss_pred             ccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhcccccccc-------------ChhHhccccchhhcc
Confidence            444 2335556666666666552 2333333255556666666666655542             223445555566666


Q ss_pred             EEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccccc
Q 044468          176 VTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHS  255 (396)
Q Consensus       176 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~  255 (396)
                      +..+....++.    ..+.++++|+.+.+.++.. .......+..+++|++|+++.+.+..+.....+        .+++
T Consensus       160 l~~N~l~~l~~----~~f~~l~~L~~l~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~--------~~~~  226 (284)
T d1ozna_         160 LHGNRISSVPE----RAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALA--------PLRA  226 (284)
T ss_dssp             CCSSCCCEECT----TTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT--------TCTT
T ss_pred             cccCcccccch----hhhccccccchhhhhhccc-cccChhHhhhhhhcccccccccccccccccccc--------cccc
Confidence            55555443321    2344455566666665432 222223466777788888887777654432221        5677


Q ss_pred             CcEeEEeCceeec
Q 044468          256 LQKVYINYSKFRH  268 (396)
Q Consensus       256 L~~L~l~~~~l~~  268 (396)
                      |++|++.+|.++.
T Consensus       227 L~~L~l~~N~l~C  239 (284)
T d1ozna_         227 LQYLRLNDNPWVC  239 (284)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             cCEEEecCCCCCC
Confidence            8888888875553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.4e-16  Score=135.47  Aligned_cols=206  Identities=17%  Similarity=0.200  Sum_probs=112.1

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT   94 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~   94 (396)
                      ++..+++..+++.++.....+.+|+.|++.+|.+.+++ + +..+++|++|++++| .+..++. +.++++|+++++++|
T Consensus        20 ~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~-~-l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-G-VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC
T ss_pred             HHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch-h-HhcCCCCcEeecCCc-eeecccc-ccccccccccccccc
Confidence            33444555555555433355667777777777776663 3 667777777777777 5554432 566677777777766


Q ss_pred             CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468           95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL  174 (396)
Q Consensus        95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  174 (396)
                      .++.++ .+.++++|++++++++.. ..++.  +...+.++.+.+..+.+...               ..+...++|+  
T Consensus        96 ~~~~i~-~l~~l~~L~~l~l~~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~~L~--  154 (227)
T d1h6ua2          96 PLKNVS-AIAGLQSIKTLDLTSTQI-TDVTP--LAGLSNLQVLYLDLNQITNI---------------SPLAGLTNLQ--  154 (227)
T ss_dssp             CCSCCG-GGTTCTTCCEEECTTSCC-CCCGG--GTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCC--
T ss_pred             cccccc-cccccccccccccccccc-cccch--hccccchhhhhchhhhhchh---------------hhhccccccc--
Confidence            666554 355666666666666522 22211  44555556665555543321               1223333333  


Q ss_pred             EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccc
Q 044468          175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH  254 (396)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~  254 (396)
                                                .|.+.++.....   ..+.++++|++|+++++.++++..  .        +.++
T Consensus       155 --------------------------~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~~l~~--l--------~~l~  195 (227)
T d1h6ua2         155 --------------------------YLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDISP--L--------ASLP  195 (227)
T ss_dssp             --------------------------EEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCGG--G--------GGCT
T ss_pred             --------------------------cccccccccccc---hhhcccccceecccCCCccCCChh--h--------cCCC
Confidence                                      333333221111   124455666666666555554321  1        1566


Q ss_pred             cCcEeEEeCceeecCCccCCCCCccEEeec
Q 044468          255 SLQKVYINYSKFRHATWLVLAPRAKVIRIS  284 (396)
Q Consensus       255 ~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~  284 (396)
                      +|++|++++|+++++++++.+++|++|+++
T Consensus       196 ~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         196 NLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             CCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            677777766666666666666777776665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.4e-16  Score=135.62  Aligned_cols=217  Identities=17%  Similarity=0.124  Sum_probs=121.2

Q ss_pred             EEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEeccccc
Q 044468           41 LFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTF  118 (396)
Q Consensus        41 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~  118 (396)
                      +.++++.+..+|.. +  .+.+++|++++| .++.+|. .+.++++|++|+++++.+..++.. ..++..++.++...+.
T Consensus        16 v~c~~~~L~~iP~~-i--p~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQAVPVG-I--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCSSCCTT-C--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCCccCCC-C--CCCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            34555555566543 2  145666677666 5555553 456666677777766666644433 3455666666655444


Q ss_pred             CCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcc
Q 044468          119 CLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSIN  198 (396)
Q Consensus       119 ~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~  198 (396)
                      ....++...+.++++|++|++..+.....             ....+...++|+.+++..+....++.    ..+..+++
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-------------~~~~~~~~~~L~~l~l~~N~l~~i~~----~~f~~~~~  154 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQEL-------------GPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGN  154 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCC-------------CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccc-------------cccccchhcccchhhhccccccccCh----hHhccccc
Confidence            45555444466666677776666655442             33445555666666666665544331    22444555


Q ss_pred             cceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc--cCCCC
Q 044468          199 TQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LVLAP  276 (396)
Q Consensus       199 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~~l~  276 (396)
                      |+.|++.++. ........+.++++|+.++++.+.+..+......        .+++|++|++.+|.++.++.  ++.++
T Consensus       155 L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~--------~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         155 LTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR--------DLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hhhcccccCc-ccccchhhhccccccchhhhhhccccccChhHhh--------hhhhccccccccccccccccccccccc
Confidence            6666666542 2333333455666666666666666544332221        55666667666665555542  55666


Q ss_pred             CccEEeecccc
Q 044468          277 RAKVIRISNCQ  287 (396)
Q Consensus       277 ~L~~L~l~~~~  287 (396)
                      +|++|++++++
T Consensus       226 ~L~~L~l~~N~  236 (284)
T d1ozna_         226 ALQYLRLNDNP  236 (284)
T ss_dssp             TCCEEECCSSC
T ss_pred             ccCEEEecCCC
Confidence            66777666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.8e-16  Score=129.43  Aligned_cols=124  Identities=23%  Similarity=0.345  Sum_probs=53.8

Q ss_pred             CccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEcc
Q 044468           13 WKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLS   92 (396)
Q Consensus        13 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~   92 (396)
                      +.+++.|+++++.+..++....+++|+.|++++|.+..++.  +..+++|++|++++| .++.++ .+.++++|+.|+++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccc-cccccc-cccccccccccccc
Confidence            33444444444444444333444444444444444444432  344444444444444 344333 24444444444444


Q ss_pred             CCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468           93 WTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus        93 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                      ++.+..++ .+.++++++++++++|. ....+.  +..+++|+++++.+|.+
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCC
T ss_pred             cccccccc-ccccccccccccccccc-cccccc--ccccccccccccccccc
Confidence            44444332 23444444444444442 222111  33444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.1e-15  Score=127.11  Aligned_cols=162  Identities=18%  Similarity=0.178  Sum_probs=79.7

Q ss_pred             CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEe
Q 044468           34 TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLN  113 (396)
Q Consensus        34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~  113 (396)
                      .+.+++.|+++++.+.++..  +..+++|++|++++| .++.++. ++++++|++|++++|.+..++. +.++++|++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCCccc--cccCCCcCcCccccc-cccCccc-ccCCcccccccccccccccccc-ccccccccccc
Confidence            34555555555555554432  455555555555555 4444432 4555555555555555554442 45555555555


Q ss_pred             cccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCC
Q 044468          114 LEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNS  193 (396)
Q Consensus       114 l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l  193 (396)
                      ++++.. ..++.  +..+++|+.|++++|.+...               ..+..+++|+.|++..+....++.      +
T Consensus       113 l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~~---------------~~l~~~~~L~~L~l~~n~l~~l~~------l  168 (199)
T d2omxa2         113 LFNNQI-TDIDP--LKNLTNLNRLELSSNTISDI---------------SALSGLTSLQQLNFSSNQVTDLKP------L  168 (199)
T ss_dssp             CCSSCC-CCCGG--GTTCTTCSEEECCSSCCCCC---------------GGGTTCTTCSEEECCSSCCCCCGG------G
T ss_pred             cccccc-ccccc--cchhhhhHHhhhhhhhhccc---------------ccccccccccccccccccccCCcc------c
Confidence            555422 22211  44555555555555544321               234455555555555554433321      2


Q ss_pred             CCCcccceEEecccCCCcccchhhhhccccccce
Q 044468          194 SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTL  227 (396)
Q Consensus       194 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  227 (396)
                      .++++|+.|+++++. .+..  ..+.++++|++|
T Consensus       169 ~~l~~L~~L~ls~N~-i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         169 ANLTTLERLDISSNK-VSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCCEEECCSSC-CCCC--GGGGGCTTCSEE
T ss_pred             cCCCCCCEEECCCCC-CCCC--ccccCCCCCCcC
Confidence            334446666666542 2222  235555666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=140.57  Aligned_cols=210  Identities=17%  Similarity=0.149  Sum_probs=105.9

Q ss_pred             cCCCcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCc
Q 044468           81 LNLVSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDS  158 (396)
Q Consensus        81 ~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  158 (396)
                      ....+|++|++++|.++  .+...+.++++|++|++.+|...+..... +..+++|++|++++|...+.           
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd-----------  110 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE-----------  110 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH-----------
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccc-----------
Confidence            34556777777777655  34445666777777777776443333333 56667777777776532210           


Q ss_pred             hhhhH-hhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchh-hhh-ccccccceeee--ccc
Q 044468          159 EVLVE-ELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAF-SFA-SLRHLWTLHLY--FND  233 (396)
Q Consensus       159 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~l~-~~~~L~~L~l~--~~~  233 (396)
                       ..+. ...++++|+.|++                            ++|...+..... .+. .+++|+.|+++  +..
T Consensus       111 -~~l~~l~~~~~~L~~L~l----------------------------s~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2         111 -FALQTLLSSCSRLDELNL----------------------------SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             -HHHHHHHHHCTTCCEEEC----------------------------CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             -cccchhhHHHHhcccccc----------------------------ccccccccccchhhhcccccccchhhhcccccc
Confidence             1222 2233444444444                            333333222211 111 23445555554  122


Q ss_pred             cceeeeccccccccccccccccCcEeEEeCc-eeec--CCccCCCCCccEEeeccccccceeecccccccchhccccccc
Q 044468          234 FEELNIDAGEVKRIRETRGFHSLQKVYINYS-KFRH--ATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLI  310 (396)
Q Consensus       234 i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  310 (396)
                      +.+..+....       ..+++|++|++++| .+++  +..++.+++|++|++++|..+++...            ..+.
T Consensus       162 i~~~~l~~l~-------~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l------------~~L~  222 (284)
T d2astb2         162 LQKSDLSTLV-------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELG  222 (284)
T ss_dssp             SCHHHHHHHH-------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGG
T ss_pred             cccccccccc-------cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH------------HHHh
Confidence            3322221111       14667777777766 5554  44566677777777777765543211            1334


Q ss_pred             cccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCC
Q 044468          311 LFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLP  354 (396)
Q Consensus       311 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp  354 (396)
                      .+|+|+.|++.+|.....+..-...+|+|+   + +|..++.+.
T Consensus       223 ~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~~  262 (284)
T d2astb2         223 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTIA  262 (284)
T ss_dssp             GCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCTT
T ss_pred             cCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCCC
Confidence            567777777777632222222122355544   3 566666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.1e-15  Score=128.16  Aligned_cols=194  Identities=21%  Similarity=0.223  Sum_probs=142.1

Q ss_pred             CCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468            5 TGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV   84 (396)
Q Consensus         5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~   84 (396)
                      .+...++.+++|+.|++.++++++++....+++|+.|++++|.+..+.+  +..++++++++++++ .++.++ .+..++
T Consensus        32 ~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n-~~~~i~-~l~~l~  107 (227)
T d1h6ua2          32 TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQ  107 (227)
T ss_dssp             TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCT
T ss_pred             CCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccc-cccccc-cccccc
Confidence            3444456688999999999999998666899999999999999988765  899999999999999 677665 478899


Q ss_pred             cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHh
Q 044468           85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE  164 (396)
Q Consensus        85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (396)
                      +|++++++++....++ .+...+.++.+.++++.... ...  +..+++|++|.+.+|.+...               ..
T Consensus       108 ~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~n~~~~~---------------~~  168 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVSDL---------------TP  168 (227)
T ss_dssp             TCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC---------------GG
T ss_pred             cccccccccccccccc-hhccccchhhhhchhhhhch-hhh--hccccccccccccccccccc---------------hh
Confidence            9999999998776654 35678889999998874333 222  77889999999999877642               34


Q ss_pred             hhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeee
Q 044468          165 LLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY  230 (396)
Q Consensus       165 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  230 (396)
                      +.++++|+.|+++++....++.      ++++++|+.|+++++. ++..  ..+.++++|+.|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l~~------l~~l~~L~~L~Ls~N~-lt~i--~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQ-ISDV--SPLANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSC-CCBC--GGGTTCTTCCEEEEE
T ss_pred             hcccccceecccCCCccCCChh------hcCCCCCCEEECcCCc-CCCC--cccccCCCCCEEEee
Confidence            6777888888877766544332      2334446666666542 2222  124555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.9e-15  Score=124.09  Aligned_cols=153  Identities=24%  Similarity=0.328  Sum_probs=129.9

Q ss_pred             CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468            3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN   82 (396)
Q Consensus         3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~   82 (396)
                      +++.++.++.+++|++|++++|.++.++....+++|+.|++++|.+..++.  +..+++|+.|+++++ ....++ .+..
T Consensus        57 ~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~-~~~~~~-~l~~  132 (210)
T d1h6ta2          57 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GISDIN-GLVH  132 (210)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCCCCG-GGGG
T ss_pred             CCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccccc-cccccc-cccc
Confidence            456677788999999999999999998766889999999999999988874  889999999999999 666554 5788


Q ss_pred             CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468           83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV  162 (396)
Q Consensus        83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  162 (396)
                      +++++.++++++.++..+ .+.++++|+++++++|.. ..++.  ++.+++|++|++++|.++..               
T Consensus       133 l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l-~~i~~--l~~l~~L~~L~Ls~N~i~~l---------------  193 (210)
T d1h6ta2         133 LPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQI-SDIVP--LAGLTKLQNLYLSKNHISDL---------------  193 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCBC---------------
T ss_pred             cccccccccccccccccc-cccccccccccccccccc-ccccc--ccCCCCCCEEECCCCCCCCC---------------
Confidence            999999999999888654 567899999999999854 45543  88999999999999987653               


Q ss_pred             HhhhcCCCCcEEEEEe
Q 044468          163 EELLALKHLNLLTVTL  178 (396)
Q Consensus       163 ~~l~~l~~L~~L~l~~  178 (396)
                      ..+.++++|+.|++.+
T Consensus       194 ~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 RALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGTTCTTCSEEEEEE
T ss_pred             hhhcCCCCCCEEEccC
Confidence            4688889999998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=7.4e-15  Score=132.87  Aligned_cols=292  Identities=20%  Similarity=0.185  Sum_probs=180.5

Q ss_pred             CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL   81 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~   81 (396)
                      .+++.+|.+  .++|++|++++|+++.+|..  ..+|+.|++.++.+..++.  +  .+.|++|++++| .+..+|. ++
T Consensus        48 ~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n-~l~~lp~-~~  117 (353)
T d1jl5a_          48 LGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN-QLEKLPE-LQ  117 (353)
T ss_dssp             SCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS-CCSSCCC-CT
T ss_pred             CCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--h--cccccccccccc-ccccccc-hh
Confidence            356667753  57899999999999988754  5689999999998876653  1  246999999999 7888875 67


Q ss_pred             CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch-----hccC
Q 044468           82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR-----ILFG  156 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~  156 (396)
                      ++++|++|+++++.+...+..   ...+..+.+..+....  ... ++.++.++.+.+..+..........     ....
T Consensus       118 ~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~--~~~-l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~  191 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN  191 (353)
T ss_dssp             TCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred             hhccceeeccccccccccccc---cccccchhhccccccc--ccc-ccccccceeccccccccccccccccccccccccc
Confidence            899999999999988766643   3456667766542222  222 6778888888888776544311111     0111


Q ss_pred             CchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc---c
Q 044468          157 DSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN---D  233 (396)
Q Consensus       157 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~---~  233 (396)
                      .....+.....++.|+.+.+..+.....+..        ..++..+.+..........     ..+.+...++..+   .
T Consensus       192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--------~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         192 NILEELPELQNLPFLTTIYADNNLLKTLPDL--------PPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSSCCSC--------CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSE
T ss_pred             ccccccccccccccccccccccccccccccc--------ccccccccccccccccccc-----ccccccccccccccccc
Confidence            1112334456678888888777655433221        1224444444322211111     1112222222211   1


Q ss_pred             cceeeeccc----ccccccc-ccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccc
Q 044468          234 FEELNIDAG----EVKRIRE-TRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDN  308 (396)
Q Consensus       234 i~~l~~~~~----~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  308 (396)
                      +..+.....    ....++. ...+++|++|++++|.++.++.  .+++|+.|++++|. ++++..              
T Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~-L~~l~~--------------  321 (353)
T d1jl5a_         259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNH-LAEVPE--------------  321 (353)
T ss_dssp             ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSCCCC--------------
T ss_pred             cccccchhcccccccCccccccccCCCCCEEECCCCccCcccc--ccCCCCEEECCCCc-CCcccc--------------
Confidence            111100000    0000111 0157899999999998888774  47999999999885 665532              


Q ss_pred             cccccCcceeeccCCcccccccCCCCCCCCcceEEec
Q 044468          309 LILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVW  345 (396)
Q Consensus       309 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~  345 (396)
                        .+++|++|++++|+ ++.++..   ..+|+.|.+.
T Consensus       322 --~~~~L~~L~L~~N~-L~~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         322 --LPQNLKQLHVEYNP-LREFPDI---PESVEDLRMN  352 (353)
T ss_dssp             --CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECC
T ss_pred             --ccCCCCEEECcCCc-CCCCCcc---ccccCeeECc
Confidence              35789999999996 8888753   3568887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.8e-15  Score=122.59  Aligned_cols=157  Identities=20%  Similarity=0.253  Sum_probs=132.1

Q ss_pred             CccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCC
Q 044468            8 PRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ   87 (396)
Q Consensus         8 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~   87 (396)
                      .....++++++|+++++++..++....+++|++|++++|.+..++.  +..+++|++|++++| ....++. +.++++|+
T Consensus        34 ~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~  109 (199)
T d2omxa2          34 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLT  109 (199)
T ss_dssp             ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCS
T ss_pred             cCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccc-ccccccc-cccccccc
Confidence            3345678999999999999998766889999999999999988765  899999999999999 6666654 78999999


Q ss_pred             EEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468           88 HLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA  167 (396)
Q Consensus        88 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  167 (396)
                      +|+++++....++ .+.++++|++|++++|. ...++.  +..+++|+.|++.+|.++..               ..+.+
T Consensus       110 ~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~~l---------------~~l~~  170 (199)
T d2omxa2         110 GLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVTDL---------------KPLAN  170 (199)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCC---------------GGGTT
T ss_pred             ccccccccccccc-ccchhhhhHHhhhhhhh-hccccc--ccccccccccccccccccCC---------------ccccC
Confidence            9999999877654 47889999999999984 445543  88999999999999988753               35788


Q ss_pred             CCCCcEEEEEecccchhhhh
Q 044468          168 LKHLNLLTVTLQIFGALQRL  187 (396)
Q Consensus       168 l~~L~~L~l~~~~~~~~~~~  187 (396)
                      +++|+.|+++++....++.+
T Consensus       171 l~~L~~L~ls~N~i~~i~~l  190 (199)
T d2omxa2         171 LTTLERLDISSNKVSDISVL  190 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGGG
T ss_pred             CCCCCEEECCCCCCCCCccc
Confidence            99999999999988776543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.3e-14  Score=119.99  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC-
Q 044468           17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT-   94 (396)
Q Consensus        17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~-   94 (396)
                      +.++.++.+++.+|.. -.+++++|++++|.+..++...|.++++|++|++++|.....++ ..+.+++.++++.+..+ 
T Consensus        11 ~~i~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSC-SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCC-CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            5566666666666653 12467777777777777766556777777777777773333333 34566777777776543 


Q ss_pred             CCCccc-hhhhcCCcccEEeccccc
Q 044468           95 GITTLP-IELKYLVNLKCLNLEYTF  118 (396)
Q Consensus        95 ~l~~l~-~~l~~l~~L~~L~l~~~~  118 (396)
                      .+...+ ..+.++++|+++++.++.
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCC
T ss_pred             cccccccccccccccccccccchhh
Confidence            555333 335667777777777763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=5.6e-14  Score=106.70  Aligned_cols=99  Identities=25%  Similarity=0.226  Sum_probs=55.7

Q ss_pred             cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCC
Q 044468           17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGI   96 (396)
Q Consensus        17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l   96 (396)
                      |.|++++|+++.++....+++|+.|++++|.+..+|.+ +..+++|++|++++| .++.+| .++.+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccC-ccccccccCeEECCCCcc
Confidence            44566666665555445555666666666666555554 555666666666665 555544 255556666666666655


Q ss_pred             Cccch--hhhcCCcccEEeccccc
Q 044468           97 TTLPI--ELKYLVNLKCLNLEYTF  118 (396)
Q Consensus        97 ~~l~~--~l~~l~~L~~L~l~~~~  118 (396)
                      +.++.  .+..+++|++|++++|.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCc
Confidence            54432  34555555556555553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-13  Score=117.51  Aligned_cols=102  Identities=15%  Similarity=0.227  Sum_probs=50.8

Q ss_pred             cEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCCCCCc-cch-hhhcCCcccEEecc
Q 044468           39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWTGITT-LPI-ELKYLVNLKCLNLE  115 (396)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~l~~-l~~-~l~~l~~L~~L~l~  115 (396)
                      +++++++..+.++|.+ +  .+++++|++++| .++.+|. .+.++++|++|++++|.+.. ++. .+.++++++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~-l--~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSD-L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSC-S--CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCC-C--CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            4555555555555543 1  135566666666 4555543 34556666666666654442 222 24455555555554


Q ss_pred             cccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468          116 YTFCLSRIPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus       116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                      .++.....+...+.++++|+++++.++.+
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred             ccccccccccccccccccccccccchhhh
Confidence            33233333333345555555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-14  Score=126.82  Aligned_cols=185  Identities=18%  Similarity=0.030  Sum_probs=93.6

Q ss_pred             cCccccEEEeecCCCCc--cccccccCCCcCCEEEccCCCCC-ccchhhhcCCcccEEecccccCCCCCC-cchhcCCCc
Q 044468           58 SMASLRVLIFLYNRSLE--NLPLGILNLVSLQHLDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIP-QPVISDLKM  133 (396)
Q Consensus        58 ~l~~L~~L~l~~~~~~~--~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~i~~l~~  133 (396)
                      ....|++||++++ .++  .+...+..+++|++|++++|.++ ..+..+.++++|++|++++|...+... ..+...+++
T Consensus        44 ~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3445666666655 332  12233445566666666666554 333445556666666666653332211 111334566


Q ss_pred             ccEEEeeccCccchhccchhccCCchhhhHhhhc-CCCCcEEEEEecccc-hhhhhhhccCCCCCcccceEEecccCCCc
Q 044468          134 LRALRMFECGFKVEQEADRILFGDSEVLVEELLA-LKHLNLLTVTLQIFG-ALQRLLNYCNSSRSINTQSLCLRHLNNSN  211 (396)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  211 (396)
                      |++|++++|.....           ......+.. .+.|+.|.+.+.... ....+.  .-..++++|++|++.+|...+
T Consensus       123 L~~L~ls~c~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~--~l~~~~~~L~~L~L~~~~~it  189 (284)
T d2astb2         123 LDELNLSWCFDFTE-----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNLVHLDLSDSVMLK  189 (284)
T ss_dssp             CCEEECCCCTTCCH-----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTCSEEECTTCTTCC
T ss_pred             cccccccccccccc-----------ccchhhhcccccccchhhhccccccccccccc--ccccccccccccccccccCCC
Confidence            66666666532210           112222322 245666665542210 011111  011235557777777766666


Q ss_pred             ccchhhhhccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc
Q 044468          212 LLSAFSFASLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS  264 (396)
Q Consensus       212 ~~~~~~l~~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  264 (396)
                      ......+..+++|++|+++ |+.+++..+...+        .+++|++|++.+|
T Consensus       190 d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~--------~~~~L~~L~l~~~  235 (284)
T d2astb2         190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG--------EIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG--------GCTTCCEEECTTS
T ss_pred             chhhhhhcccCcCCEEECCCCCCCChHHHHHHh--------cCCCCCEEeeeCC
Confidence            6555566677777777777 5666554332221        5677788877777

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=116.06  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=64.7

Q ss_pred             CCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCC
Q 044468            7 APRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLV   84 (396)
Q Consensus         7 ~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~   84 (396)
                      .+.+.++.++|+|++++|+++.++.. ..+++|+.|++++|.+.+++.  +..+++|++|++++| .+..++.. +..++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~   87 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALP   87 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccc-cccCCCcccccccc
Confidence            34455556666666666666666554 556666666666666665532  566666666666666 55555433 23566


Q ss_pred             cCCEEEccCCCCCccch--hhhcCCcccEEecccc
Q 044468           85 SLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYT  117 (396)
Q Consensus        85 ~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~  117 (396)
                      +|++|++++|.++.++.  .+..+++|++|++.+|
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ccccceeccccccccccccccccccccchhhcCCC
Confidence            66666666666655442  3455666666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.8e-13  Score=103.88  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=88.8

Q ss_pred             cEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEeccccc
Q 044468           39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTF  118 (396)
Q Consensus        39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~  118 (396)
                      |+|++++|.+..++.  +..+++|++|++++| .++.+|..++.+++|++|++++|.++.+| .+.++++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            689999999988875  789999999999999 88889888999999999999999999887 48899999999999984


Q ss_pred             CCCCCCc-chhcCCCcccEEEeeccCccc
Q 044468          119 CLSRIPQ-PVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus       119 ~~~~~~~-~~i~~l~~L~~L~l~~~~~~~  146 (396)
                       +..++. ..++.+++|++|++.+|.++.
T Consensus        77 -i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 -LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             -CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             -cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence             444432 337889999999999998765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.6e-13  Score=108.14  Aligned_cols=134  Identities=16%  Similarity=0.143  Sum_probs=104.4

Q ss_pred             ccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchh-hhcCC
Q 044468           29 LTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIE-LKYLV  107 (396)
Q Consensus        29 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~  107 (396)
                      .+...++..+|.|++++|.+..++.. +..+++|++|++++| .+..++ .+..+++|++|++++|.++.++.. +..++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~-~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCG-GGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hHhccCcCcCcEEECCCCCCCccCcc-ccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCcccccccc
Confidence            33336677899999999999988754 678999999999999 788774 478899999999999999988765 46799


Q ss_pred             cccEEecccccCCCCCCc-chhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEE
Q 044468          108 NLKCLNLEYTFCLSRIPQ-PVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTV  176 (396)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  176 (396)
                      +|++|++++|. +..++. ..+..+++|++|++.+|.++..          .......+..+++|+.|+.
T Consensus        88 ~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~----------~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK----------KHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS----------TTHHHHHHHHCTTCSEETT
T ss_pred             ccccceecccc-ccccccccccccccccchhhcCCCccccc----------cchHHHHHHHCCCcCeeCC
Confidence            99999999984 444442 3378899999999999987653          0011345677888887763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=1.1e-12  Score=107.94  Aligned_cols=129  Identities=23%  Similarity=0.256  Sum_probs=104.9

Q ss_pred             cccEEEccccccccccCCCCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCcc-ccccccCCCcCCEEEcc
Q 044468           15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLEN-LPLGILNLVSLQHLDLS   92 (396)
Q Consensus        15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~l~   92 (396)
                      ..++++.++++++.+|..- .++++.|++++|.+. .++...|..+++|++|++++| .+.. .+..+..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeec
Confidence            3567889999999888651 268999999999996 455555889999999999999 5554 45677789999999999


Q ss_pred             CCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           93 WTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        93 ~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      +|.++.++.. +.++++|++|++++| .+..++.+.+..+++|+++++.+|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCccccccccccccccc
Confidence            9999988664 788999999999998 5666776668889999999999987764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=9.5e-12  Score=102.11  Aligned_cols=118  Identities=25%  Similarity=0.277  Sum_probs=99.0

Q ss_pred             CCCCCCCccCCCccccEEEcccccccc-ccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-
Q 044468            2 AGLTGAPRIGMWKEITRMSLMQNAIQN-LTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-   77 (396)
Q Consensus         2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-   77 (396)
                      .+++.+|. +-.+++++|++++|.++. ++..  ..+++|+.|++++|.+..++...+..+++|++|++++| .+..+| 
T Consensus        18 ~~L~~iP~-~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~   95 (192)
T d1w8aa_          18 RGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISN   95 (192)
T ss_dssp             SCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECS
T ss_pred             CCcCccCC-CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCH
Confidence            56777763 113589999999999976 4343  78999999999999998887777999999999999999 788776 


Q ss_pred             ccccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCC
Q 044468           78 LGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLS  121 (396)
Q Consensus        78 ~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~  121 (396)
                      ..|.++++|++|+|++|.++.++.. +..+++|++|++++|....
T Consensus        96 ~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             HHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            4678999999999999999988765 7899999999999985443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-12  Score=122.33  Aligned_cols=322  Identities=16%  Similarity=0.109  Sum_probs=179.4

Q ss_pred             ccccEEEcccccccc--ccCC-CCCCCCcEEEccCCccCc-----cChHHHhcCccccEEEeecCCCCcc-----ccccc
Q 044468           14 KEITRMSLMQNAIQN--LTET-PTCPHLRALFLHSNHLGT-----VSNNFFHSMASLRVLIFLYNRSLEN-----LPLGI   80 (396)
Q Consensus        14 ~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~l   80 (396)
                      .+|+.|++++++++.  +... ..++++++|++.+|.+.+     +.. .+..+++|++|++++| .++.     +...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSN-ELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCC-cCChHHHHHHHHHH
Confidence            368889999988876  3333 678888899999997753     222 2678889999999988 5542     12222


Q ss_pred             c-CCCcCCEEEccCCCCCc-----cchhhhcCCcccEEecccccCCCC----CCc-------------------------
Q 044468           81 L-NLVSLQHLDLSWTGITT-----LPIELKYLVNLKCLNLEYTFCLSR----IPQ-------------------------  125 (396)
Q Consensus        81 ~-~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~~~~~----~~~-------------------------  125 (396)
                      . ...+|++|++++|.++.     ++..+..+++|++|++++|.....    +..                         
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence            2 23579999999888863     345567788899999888742210    000                         


Q ss_pred             ---chhcCCCcccEEEeeccCccchhccc---------------h-----hccCCchhhhHhhhcCCCCcEEEEEecccc
Q 044468          126 ---PVISDLKMLRALRMFECGFKVEQEAD---------------R-----ILFGDSEVLVEELLALKHLNLLTVTLQIFG  182 (396)
Q Consensus       126 ---~~i~~l~~L~~L~l~~~~~~~~~~~~---------------~-----~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  182 (396)
                         ..+.....++.+.+..+.........               .     ............+...+.++.+.+..+...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence               00112344555555554332210000               0     000111123334455666776766655442


Q ss_pred             hhhhhhh-ccCCCCCcccceEEecccCCCcccch---hhhhccccccceeeeccccceeeeccccccccccccccccCcE
Q 044468          183 ALQRLLN-YCNSSRSINTQSLCLRHLNNSNLLSA---FSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQK  258 (396)
Q Consensus       183 ~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~  258 (396)
                      ....... .........++.+++.++........   ..+...+.++.++++.+.+.+.+...... .+. . ....|+.
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~-~l~-~-~~~~L~~  316 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE-TLL-E-PGCQLES  316 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH-HHT-S-TTCCCCE
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc-ccc-c-ccccccc
Confidence            2111100 11223344588888877543222211   12445677788888776665433221110 000 1 3467899


Q ss_pred             eEEeCceeecC--Cc----cCCCCCccEEeeccccccceeecccccccchhcccccc-ccccCcceeeccCCccccc---
Q 044468          259 VYINYSKFRHA--TW----LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL-ILFGRLEYLILEGLQNLKS---  328 (396)
Q Consensus       259 L~l~~~~l~~l--~~----l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~---  328 (396)
                      +.+.+|.++..  ..    +...++|++|+++++. +++.....        +...+ ...+.|++|++++| .+..   
T Consensus       317 l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~--------l~~~l~~~~~~L~~L~Ls~n-~i~~~~~  386 (460)
T d1z7xw1         317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRE--------LCQGLGQPGSVLRVLWLADC-DVSDSSC  386 (460)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHH--------HHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred             ccccccchhhhhhhhcccccccccchhhhheeeec-ccCcccch--------hhhhhhcccCCCCEEECCCC-CCChHHH
Confidence            99998855542  22    3346789999999875 43221100        00112 24677999999998 4643   


Q ss_pred             --ccCCCCCCCCcceEEeccCcccc
Q 044468          329 --IHSSYLPFPRLKEICVWKCAELK  351 (396)
Q Consensus       329 --~~~~~~~~~~L~~L~i~~c~~L~  351 (396)
                        ++......++|++|++.+. .+.
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N-~i~  410 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNN-CLG  410 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred             HHHHHHHhcCCCCCEEECCCC-cCC
Confidence              2222334689999999886 454

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=7.3e-13  Score=109.26  Aligned_cols=116  Identities=18%  Similarity=0.199  Sum_probs=65.5

Q ss_pred             cCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcch
Q 044468           48 LGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPV  127 (396)
Q Consensus        48 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~  127 (396)
                      +..++.+ +..+++|++|++++| .++.++ .+..+++|++|++++|.++.+|.....+++|++|++++| .+..++.  
T Consensus        37 i~~l~~s-l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~--  110 (198)
T d1m9la_          37 IEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--  110 (198)
T ss_dssp             CCCCHHH-HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHHH--
T ss_pred             hhhhhhH-HhcccccceeECccc-CCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-ccccccc--
Confidence            3444444 566666666666666 455553 355566666666666666655544444555666666665 3333322  


Q ss_pred             hcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEeccc
Q 044468          128 ISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIF  181 (396)
Q Consensus       128 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  181 (396)
                      +..+++|++|++++|.+...            ..+..+..+++|+.|++.++..
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~------------~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNW------------GEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCH------------HHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccccchhccc------------cccccccCCCccceeecCCCcc
Confidence            55566666666666665543            2344556666666666665544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=4.2e-13  Score=110.72  Aligned_cols=127  Identities=21%  Similarity=0.265  Sum_probs=100.1

Q ss_pred             cccEEEcccc--ccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEc
Q 044468           15 EITRMSLMQN--AIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDL   91 (396)
Q Consensus        15 ~L~~L~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l   91 (396)
                      ..+.+++.+.  .+..++.. ..+++|+.|++++|.+..++.  +..+++|++|++++| .++.+|.....+++|++|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccc-cccccccccccccccccccc
Confidence            3455666654  34445444 778999999999999988864  889999999999999 77777765556778999999


Q ss_pred             cCCCCCccchhhhcCCcccEEecccccCCCCCCc-chhcCCCcccEEEeeccCccc
Q 044468           92 SWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQ-PVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        92 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      ++|.++.++ .+.++++|++|++++| .+..++. ..+..+++|+.|++.+|.+..
T Consensus       101 ~~N~i~~l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccc-cccccccccccccccc-hhccccccccccCCCccceeecCCCcccc
Confidence            999998875 4788999999999998 4455442 237889999999999997654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.16  E-value=7.4e-12  Score=112.70  Aligned_cols=146  Identities=10%  Similarity=0.009  Sum_probs=74.2

Q ss_pred             CCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhh-hccCCCCCcccceEEecccC
Q 044468          130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLL-NYCNSSRSINTQSLCLRHLN  208 (396)
Q Consensus       130 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~  208 (396)
                      ..+.|+.+.+.++.+...         ........+...+.|+.+++..+......... -...+..+++|+.|+++++.
T Consensus       156 ~~~~L~~l~l~~n~i~~~---------~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENG---------SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             TCCCCCEEECCSSCCTGG---------GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             cCcccceeeccccccccc---------ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence            345566666666554431         01123334455566666666655543221111 01234455557777776542


Q ss_pred             CCcccch----hhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec--CC----cc-CCCCC
Q 044468          209 NSNLLSA----FSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH--AT----WL-VLAPR  277 (396)
Q Consensus       209 ~~~~~~~----~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--l~----~l-~~l~~  277 (396)
                       ......    ..+..+++|++|+++.+.+.+.+....+. .+... ..+.|++|++++|.++.  +.    .+ .++++
T Consensus       227 -i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~-~l~~~-~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~  303 (344)
T d2ca6a1         227 -FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKL-ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  303 (344)
T ss_dssp             -CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTC-SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             -ccccccccccccccccccchhhhhhcCccCchhhHHHHH-Hhhhc-cCCCCCEEECCCCcCChHHHHHHHHHHHccCCC
Confidence             222211    23456677777777766665543322211 01111 34678888888875554  11    12 24678


Q ss_pred             ccEEeecccc
Q 044468          278 AKVIRISNCQ  287 (396)
Q Consensus       278 L~~L~l~~~~  287 (396)
                      |++|+++++.
T Consensus       304 L~~L~l~~N~  313 (344)
T d2ca6a1         304 LLFLELNGNR  313 (344)
T ss_dssp             CCEEECTTSB
T ss_pred             CCEEECCCCc
Confidence            8888887765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.3e-10  Score=87.47  Aligned_cols=104  Identities=15%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             CcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecc
Q 044468           38 LRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLE  115 (396)
Q Consensus        38 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~  115 (396)
                      ...+.+.++.+.++|.. +..+++|++|++.++..++.++ ..+.++++|+.|++++|+++.++. .+.++++|++|+++
T Consensus        10 ~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34445555544444444 4555555555555443344443 235555555555555555555532 25555566666665


Q ss_pred             cccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468          116 YTFCLSRIPQPVISDLKMLRALRMFECGF  144 (396)
Q Consensus       116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~  144 (396)
                      +| .+..++...+.. .+|+.|++.+|.+
T Consensus        89 ~N-~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FN-ALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             SS-CCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             CC-CCcccChhhhcc-ccccccccCCCcc
Confidence            55 334455442322 2466666666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.6e-11  Score=114.50  Aligned_cols=87  Identities=22%  Similarity=0.269  Sum_probs=56.8

Q ss_pred             cCCCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccCccChHHH-h----cCccccEEEeecCCCCcc---
Q 044468           10 IGMWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLGTVSNNFF-H----SMASLRVLIFLYNRSLEN---   75 (396)
Q Consensus        10 ~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~-~----~l~~L~~L~l~~~~~~~~---   75 (396)
                      ++.++++++|++++|.++.     +... ..+++|+.|++++|.+.+.....+ .    ...+|++|++++| .++.   
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~  101 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  101 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Ccccccc
Confidence            3446778888888887763     3333 677888888888887743211111 1    2346888888888 5542   


Q ss_pred             --ccccccCCCcCCEEEccCCCCC
Q 044468           76 --LPLGILNLVSLQHLDLSWTGIT   97 (396)
Q Consensus        76 --l~~~l~~l~~L~~L~l~~~~l~   97 (396)
                        ++..+..+++|++|++++|.++
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccccchhhccccccccccccccch
Confidence              3345667788888888877654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=9.2e-11  Score=105.37  Aligned_cols=144  Identities=11%  Similarity=0.008  Sum_probs=68.4

Q ss_pred             cCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccc-----hhhhhccccccceeeeccccceeeecc
Q 044468          167 ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLS-----AFSFASLRHLWTLHLYFNDFEELNIDA  241 (396)
Q Consensus       167 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~l~~~~  241 (396)
                      ..+.|+.+.+..+.............+..++.|+.|++.++.- ....     ...+..+++|+.|+++.+.+.+.+...
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccc-cccccccchhhhhcchhhhccccccccccccccccc
Confidence            4556666666655443211111112223344577777766432 2211     112455667777777766654432211


Q ss_pred             ccccccccccccccCcEeEEeCceeecC--Cc----cC--CCCCccEEeeccccccceeecccccccchhcccccc-ccc
Q 044468          242 GEVKRIRETRGFHSLQKVYINYSKFRHA--TW----LV--LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL-ILF  312 (396)
Q Consensus       242 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~----l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~  312 (396)
                      ... .+   ..+++|++|++++|.+++-  ..    +.  ..+.|++|+++++. ++.-...        .+...+ ..+
T Consensus       235 L~~-~l---~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~--------~l~~~l~~~~  301 (344)
T d2ca6a1         235 LAI-AL---KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVR--------TLKTVIDEKM  301 (344)
T ss_dssp             HHH-HG---GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHH--------HHHHHHHHHC
T ss_pred             ccc-cc---cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHH--------HHHHHHHccC
Confidence            100 00   1567777777777755541  11    11  24567777777664 3221110        011122 246


Q ss_pred             cCcceeeccCCc
Q 044468          313 GRLEYLILEGLQ  324 (396)
Q Consensus       313 ~~L~~L~l~~~~  324 (396)
                      ++|++|+++++.
T Consensus       302 ~~L~~L~l~~N~  313 (344)
T d2ca6a1         302 PDLLFLELNGNR  313 (344)
T ss_dssp             TTCCEEECTTSB
T ss_pred             CCCCEEECCCCc
Confidence            677777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.1e-09  Score=83.43  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=89.4

Q ss_pred             CCccccEEEccccccccccCC-CCCCCCcEEEccCC-ccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCE
Q 044468           12 MWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQH   88 (396)
Q Consensus        12 ~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~   88 (396)
                      .+.....++..++++...+.. ..+++|+.|++.++ .++.++...|..+++|++|++++| .+..++ ..+..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccc
Confidence            445566788888888886666 78899999999866 588888777899999999999999 778774 56889999999


Q ss_pred             EEccCCCCCccchhhhcCCcccEEecccccC
Q 044468           89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFC  119 (396)
Q Consensus        89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~  119 (396)
                      |+|++|.++.+|..+....+|++|++++|.+
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCcc
Confidence            9999999999988766666899999999854

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.9e-07  Score=71.54  Aligned_cols=82  Identities=17%  Similarity=0.035  Sum_probs=58.3

Q ss_pred             HhcCccccEEEeecCCCCcccc---ccccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCc------
Q 044468           56 FHSMASLRVLIFLYNRSLENLP---LGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQ------  125 (396)
Q Consensus        56 ~~~l~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~------  125 (396)
                      +..+++|++|++++| .++.++   ..+..+++|++|++++|.++.++.. ..+..+|+.+++.+|........      
T Consensus        61 ~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            567889999999998 666543   3455788899999999988877652 22445688888888865544321      


Q ss_pred             chhcCCCcccEEE
Q 044468          126 PVISDLKMLRALR  138 (396)
Q Consensus       126 ~~i~~l~~L~~L~  138 (396)
                      .++..+|+|+.|+
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            3356788888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.7e-06  Score=67.71  Aligned_cols=65  Identities=23%  Similarity=0.071  Sum_probs=42.3

Q ss_pred             cCCCcCCEEEccCCCCCccc---hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468           81 LNLVSLQHLDLSWTGITTLP---IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV  146 (396)
Q Consensus        81 ~~l~~L~~L~l~~~~l~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~  146 (396)
                      ..+++|++|++++|.++.++   ..+.++++|++|++++| .+..++....-...+|+.+++.+|++..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCc
Confidence            45777888888888777543   34567788888888877 4444443112334467778888777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=4.1e-05  Score=59.86  Aligned_cols=16  Identities=6%  Similarity=0.038  Sum_probs=7.9

Q ss_pred             hHhhhcCCCCcEEEEE
Q 044468          162 VEELLALKHLNLLTVT  177 (396)
Q Consensus       162 ~~~l~~l~~L~~L~l~  177 (396)
                      ...+..-+.|+.+++.
T Consensus       124 ~~~L~~n~sL~~l~l~  139 (167)
T d1pgva_         124 MMAIEENESLLRVGIS  139 (167)
T ss_dssp             HHHHHHCSSCCEEECC
T ss_pred             HHHHHhCCCccEeeCc
Confidence            4444445555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.35  E-value=0.00017  Score=56.13  Aligned_cols=108  Identities=9%  Similarity=-0.004  Sum_probs=56.5

Q ss_pred             CCCCCCcEEEccCC-ccCc-----cChHHHhcCccccEEEeecCCCCc-----cccccccCCCcCCEEEccCCCCC----
Q 044468           33 PTCPHLRALFLHSN-HLGT-----VSNNFFHSMASLRVLIFLYNRSLE-----NLPLGILNLVSLQHLDLSWTGIT----   97 (396)
Q Consensus        33 ~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~l~----   97 (396)
                      .+.++|+.|+++++ .++.     +... +...++|++|++++| .++     .+...+...+.|++|++++|.++    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~-L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHH-HhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            34566666666653 3321     1112 455566677777666 443     11122334566777777777665    


Q ss_pred             -ccchhhhcCCcccEEecccccCCCC-------CCcchhcCCCcccEEEeeccC
Q 044468           98 -TLPIELKYLVNLKCLNLEYTFCLSR-------IPQPVISDLKMLRALRMFECG  143 (396)
Q Consensus        98 -~l~~~l~~l~~L~~L~l~~~~~~~~-------~~~~~i~~l~~L~~L~l~~~~  143 (396)
                       .+-..+...++|++|++.++....-       +... +...++|+.|++..+.
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~-L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHH-HHhCCCccEeeCcCCC
Confidence             2233455556677777766522110       1222 4445677777776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.93  E-value=0.00037  Score=54.11  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=17.7

Q ss_pred             CCCcCCEEEccCCCCC-----ccchhhhcCCcccEEecccc
Q 044468           82 NLVSLQHLDLSWTGIT-----TLPIELKYLVNLKCLNLEYT  117 (396)
Q Consensus        82 ~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~  117 (396)
                      ..++|++|++++|.++     .+...+...++++.+++.+|
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            4455555555555444     22223444455555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.77  E-value=0.00072  Score=52.37  Aligned_cols=108  Identities=12%  Similarity=0.064  Sum_probs=55.5

Q ss_pred             CCCCCCcEEEccCC-ccCc-----cChHHHhcCccccEEEeecCCCCcc-----ccccccCCCcCCEEEccCCCCC----
Q 044468           33 PTCPHLRALFLHSN-HLGT-----VSNNFFHSMASLRVLIFLYNRSLEN-----LPLGILNLVSLQHLDLSWTGIT----   97 (396)
Q Consensus        33 ~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~l~~l~~L~~L~l~~~~l~----   97 (396)
                      .+.+.|+.|+++++ .++.     +.. .+...++|++|++++| .++.     +...+...+.++.++++++.++    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~-al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHH-HHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            44566666666653 3321     111 1445666666666666 4431     1122334566677777666554    


Q ss_pred             -ccchhhhcCCcccEEecccc--cCCCC----CCcchhcCCCcccEEEeeccC
Q 044468           98 -TLPIELKYLVNLKCLNLEYT--FCLSR----IPQPVISDLKMLRALRMFECG  143 (396)
Q Consensus        98 -~l~~~l~~l~~L~~L~l~~~--~~~~~----~~~~~i~~l~~L~~L~l~~~~  143 (396)
                       .+...+...++|+.+++..+  .....    +... +...++|++|++..+.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCC
Confidence             23344556666776655432  11111    2222 4456777777776554