Citrus Sinensis ID: 044478

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHcccccc
cccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHccc
msfpvsaspnkvirinaekestrrsanfdptiwgdyflsytgdfkesgdasVKHQELKKEIRTMLRAdinkpsqtkldLIDDIQRLGVSYHFESEIDEILQKMHEAnqdcdlgddenVQELYYISLQFRLLRQNGYKISAADVFnsfkdsngnfkSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRALnrpirkslprleakhympiy
msfpvsaspnkvirinaekestrrsanfdptiWGDYFLSYTGDFKESGDASVKHQELKKEIRTMlradinkpsqtkldliDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRalnrpirkslprleakhympiy
MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY
***************************FDPTIWGDYFLSYTGDF******************************TKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFT***********************************
***************************FDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY
*********NKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKE*********ELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY
**********************RRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query232 2.2.26 [Sep-21-2011]
Q6Q3H3 557 (-)-germacrene D synthase yes no 0.931 0.387 0.550 4e-61
O23945 556 (-)-alpha-pinene synthase N/A no 0.956 0.399 0.480 3e-55
Q6Q3H2 556 Valencene synthase OS=Vit no no 0.956 0.399 0.5 3e-52
E3W207 559 Sesquiterpene synthase OS N/A no 0.931 0.386 0.467 2e-50
P0CV97252 Putative pinene synthase N/A no 0.948 0.873 0.469 1e-49
O49853 554 (+)-delta-cadinene syntha N/A no 0.913 0.382 0.444 1e-49
F6M8H4 559 Probable sesquiterpene sy N/A no 0.931 0.386 0.463 4e-49
Q39760 554 (+)-delta-cadinene syntha N/A no 0.913 0.382 0.440 4e-49
Q39761 554 (+)-delta-cadinene syntha N/A no 0.913 0.382 0.440 5e-49
B5A435 559 Sesquiterpene synthase OS N/A no 0.931 0.386 0.459 1e-48
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  234 bits (597), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 159/229 (69%), Gaps = 13/229 (5%)

Query: 5   VSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKH-QELKKEIRT 63
           V  +P+K    N   E  RR ANF P+IWGD+FLSY  +F  + D   +H Q+LK+E+R 
Sbjct: 8   VLLAPSK----NLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRK 63

Query: 64  MLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYY 123
           ML A  +  +Q KL LID IQRLGV+YHFESEIDE+L+ M + +    +  +E+V   Y 
Sbjct: 64  MLMAADDDSAQ-KLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSV---VSAEEDV---YT 116

Query: 124 ISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILN 183
            SL+FRLLRQ GY +S  D+FN+FKD+ GNFK  L  D+RGMLSLYEA H RVHGE+IL+
Sbjct: 117 ASLRFRLLRQQGYHVSC-DLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILD 175

Query: 184 EALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
           EAL FT THL+S T  S+  LA QV  AL +PIRK LPRLEA+HY  +Y
Sbjct: 176 EALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVY 224
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|O23945|PINS_FRAVE (-)-alpha-pinene synthase OS=Fragaria vesca PE=1 SV=2 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|P0CV97|PINS_FRAAN Putative pinene synthase OS=Fragaria ananassa PE=5 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
322424205 541 germacrene D synthase [Citrus hystrix] 0.896 0.384 0.693 1e-76
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.931 0.387 0.550 2e-59
75223414 557 RecName: Full=(-)-germacrene D synthase 0.931 0.387 0.550 2e-59
147856860 557 hypothetical protein VITISV_030783 [Viti 0.931 0.387 0.550 3e-59
147828675 557 hypothetical protein VITISV_013313 [Viti 0.931 0.387 0.550 3e-59
41058926 561 (-)-germacrene D synthase [Populus trich 0.922 0.381 0.552 3e-59
347664489 557 (E)-beta-caryophyllene synthase [Vitis v 0.931 0.387 0.545 2e-58
225461172 557 PREDICTED: (-)-germacrene D synthase [Vi 0.931 0.387 0.550 1e-57
302143187 725 unnamed protein product [Vitis vinifera] 0.931 0.297 0.550 1e-57
336318889 561 terpene synthase 1 [Populus trichocarpa] 0.922 0.381 0.543 5e-57
>gi|322424205|gb|ADX01384.1| germacrene D synthase [Citrus hystrix] Back     alignment and taxonomy information
 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 169/212 (79%), Gaps = 4/212 (1%)

Query: 21  STRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLI 80
           S   SANF P+IWGD+FL YT DF+E+GD SVKH ELKKEIR ML+A +NK S T L+LI
Sbjct: 2   SVEGSANFHPSIWGDHFLQYTRDFQETGDRSVKHLELKKEIRRMLKA-VNKTSHT-LELI 59

Query: 81  DDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISA 140
           D IQRLGVSYHFESEIDEIL KMH+  +DCDL D+EN  ELYYISLQFRL RQNGY+ISA
Sbjct: 60  DAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNEN-DELYYISLQFRLFRQNGYRISA 118

Query: 141 ADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQS 200
            DVFN+FK S+G FK+ L +D+RGMLSLYEA HLRVHGENIL+EAL FT +HLES   Q 
Sbjct: 119 -DVFNTFKGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQV 177

Query: 201 NTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
            + L  QV  AL +PI K L RLEA+HY+PIY
Sbjct: 178 CSPLVEQVKHALVQPIHKGLERLEARHYIPIY 209

Source: Citrus hystrix

Species: Citrus hystrix

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143187|emb|CBI20482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|336318889|gb|AEI52901.1| terpene synthase 1 [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.991 0.402 0.456 5.4e-47
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.931 0.386 0.463 1.8e-46
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.918 0.383 0.434 4.6e-41
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.883 0.369 0.425 5.3e-40
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.887 0.374 0.427 1.4e-39
UNIPROTKB|J7LP58 564 J7LP58 "Alpha-copaene/delta-ca 0.943 0.388 0.432 1.4e-39
UNIPROTKB|Q8LSC3 583 Q8LSC3 "Germacrene A synthase 0.922 0.367 0.418 5.5e-38
UNIPROTKB|D0VMR8 547 C4 "Delta-guaiene synthase 3" 0.879 0.372 0.424 8.9e-38
UNIPROTKB|B2KSJ6 560 B2KSJ6 "Alpha-farnesene syntha 0.935 0.387 0.413 1.1e-37
UNIPROTKB|D0VMR6 547 C2 "Delta-guaiene synthase 1" 0.879 0.372 0.415 1e-36
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 109/239 (45%), Positives = 152/239 (63%)

Query:     1 MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKH--QELK 58
             MS  VS  P  +++ N   +  R  ANF P IW ++FLS+T D     D  +K   ++LK
Sbjct:     1 MSSQVSNFPASIMKTNDIPDVKRSLANFHPNIWKEHFLSFTFDDALKIDEGMKERTEKLK 60

Query:    59 KEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEA-NQDCDLGD-DE 116
             +EIR M+ A +      KL+L+D IQRLGVSYHFE E+DE L+ ++ + N    L + + 
Sbjct:    61 EEIRMMMIAYVEN-QLIKLNLVDSIQRLGVSYHFEDEVDEFLEHIYVSYNNSLLLSNKNS 119

Query:   117 NVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRV 176
             N ++L+  +L FRLLRQ GY+IS  D+F  F D NG FK  L  D RG+LSLYEA+H+  
Sbjct:   120 NGEDLHITALLFRLLRQQGYRISC-DIFLKFMDDNGKFKESLVEDERGLLSLYEASHMMG 178

Query:   177 HGENILNEALTFTVTHLESFT---SQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
             HGE +L EAL FT THL+++    S  N   A++V+ AL  PIRKS+PR++A+ Y+ IY
Sbjct:   179 HGEALLEEALEFTTTHLQTYIHRYSNINPSFASEVSNALKLPIRKSVPRIKAREYLEIY 237
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA
GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 6e-80
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-73
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 8e-18
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 8e-11
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  248 bits (636), Expect = 6e-80
 Identities = 98/215 (45%), Positives = 135/215 (62%), Gaps = 9/215 (4%)

Query: 23  RRSANFDPTIWGD-YFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTK-LDLI 80
           R SANF P++WGD +FLS + D+ E  +   + +ELK+E+R ML          + L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 81  DDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISA 140
           D +QRLG+SYHFE EI EIL  ++    +     + N  +LY  +L FRLLRQ+GY +S+
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTE---RGESNEDDLYTTALGFRLLRQHGYNVSS 117

Query: 141 ADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQS 200
            DVF  FKD +G FK  L +D++GMLSLYEA+HL   GE+IL+EAL+FT  HLE     +
Sbjct: 118 -DVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESN 176

Query: 201 NTQ---LAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
                 L+ ++  AL  P+  SLPRLEA+ Y+  Y
Sbjct: 177 WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFY 211

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=7e-69  Score=520.21  Aligned_cols=205  Identities=48%  Similarity=0.804  Sum_probs=187.4

Q ss_pred             ccCCCCCCCCccc-cccccCCCCccchhHHHHHHHHHHHHHHHHHhc--cCCccchhhhhHHHHHHhCcccccHHHHHHH
Q 044478           23 RRSANFDPTIWGD-YFLSYTGDFKESGDASVKHQELKKEIRTMLRAD--INKPSQTKLDLIDDIQRLGVSYHFESEIDEI   99 (232)
Q Consensus        23 R~~a~~~PsiW~d-~fl~~~~~~~~~~~~~~~~~~LkeeVr~ml~~~--~~d~~~~~L~lID~lqRLGI~yhFe~EI~~~   99 (232)
                      |++++|+||+||| .|+++++++.+...+.+++++||++||+||...  +.|++ ++|+|||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~-~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLF-ERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHH-HHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 666766655432268899999999999999864  56899 9999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCcccchhhHHHHHHHHhhcccccccccccccccccccccccchhhcHHHHHHHHHHhhcCCCCc
Q 044478          100 LQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGE  179 (232)
Q Consensus       100 L~~i~~~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~~DvF~~Fkd~~G~Fk~~l~~Dv~glLsLYeAS~L~~~gE  179 (232)
                      |++||+.|.+.   .+..+.|||+|||+|||||||||+|| ||||++|+|++|+|++++.+||+|||||||||||+++||
T Consensus        80 L~~i~~~~~~~---~~~~~~dl~~~al~FRlLR~~Gy~vs-~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE  155 (542)
T cd00684          80 LDYIYRYWTER---GESNEDDLYTTALGFRLLRQHGYNVS-SDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGE  155 (542)
T ss_pred             HHHHHHhhccc---ccccCCCHHHHHHHHHHHHHcCCCcC-HHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCc
Confidence            99999987632   11223499999999999999999999 999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhc---CChhHHHHHHHHcCCCCCCCCChhHHhhcccCC
Q 044478          180 NILNEALTFTVTHLESFTSQ---SNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY  232 (232)
Q Consensus       180 ~iLdeA~~Ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y  232 (232)
                      +|||||+.||++||++.+..   ++++|+++|++||++|+||++||||||+||++|
T Consensus       156 ~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y  211 (542)
T cd00684         156 DILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFY  211 (542)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHh
Confidence            99999999999999999886   789999999999999999999999999999988

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 4e-50
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-44
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-44
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-43
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-43
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 1e-43
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 1e-43
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 7e-43
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 8e-43
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-41
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 3e-31
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-25
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-23
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 1e-22
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 9e-21
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 6e-17
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 1e-16
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 6e-16
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  194 bits (493), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/227 (44%), Positives = 150/227 (66%), Gaps = 15/227 (6%)
Query: 6   SASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTML 65
           S+SP     +++ K+  R  A+F P+IWGD FL+   D     +   +HQ+LK+E+R M+
Sbjct: 10  SSSP-----LSSNKDEMRPKADFQPSIWGDLFLN-CPDKNIDAETEKRHQQLKEEVRKMI 63
Query: 66  RADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYIS 125
            A +   +Q KL  ID +QRLGVSYHF  EI++ L+ ++  N D +        +LY  S
Sbjct: 64  VAPMANSTQ-KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE-------NDLYTTS 115
Query: 126 LQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEA 185
           ++FRLLR++GY +S  DVFN FKD  GNFKS +  D+RG+L LY+A++LRVHGE+IL+EA
Sbjct: 116 IRFRLLREHGYNVSC-DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEA 174
Query: 186 LTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
           ++FT  HL    +  +  L+ +V+ AL + IR+ LPR+EA+HY+ +Y
Sbjct: 175 ISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVY 221
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 2e-63
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 2e-62
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 3e-62
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 8e-62
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 7e-60
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 1e-58
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 6e-43
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-39
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 1e-39
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  205 bits (522), Expect = 2e-63
 Identities = 101/232 (43%), Positives = 152/232 (65%), Gaps = 11/232 (4%)

Query: 1   MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKE 60
           M+  VS  P+    +++ K+  R  A+F P+IWGD FL+   D     +   +HQ+LK+E
Sbjct: 1   MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCP-DKNIDAETEKRHQQLKEE 58

Query: 61  IRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQE 120
           +R M+ A +   +Q KL  ID +QRLGVSYHF  EI++ L+ ++  N D +        +
Sbjct: 59  VRKMIVAPMANSTQ-KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE-------ND 110

Query: 121 LYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGEN 180
           LY  S++FRLLR++GY +S  DVFN FKD  GNFKS +  D+RG+L LY+A++LRVHGE+
Sbjct: 111 LYTTSIRFRLLREHGYNVSC-DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGED 169

Query: 181 ILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
           IL+EA++FT  HL    +  +  L+ +V+ AL + IR+ LPR+EA+HY+ +Y
Sbjct: 170 ILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVY 221
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.96
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.6e-71  Score=536.42  Aligned_cols=204  Identities=46%  Similarity=0.851  Sum_probs=180.9

Q ss_pred             hhccccCCCCCCCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHhccCCccchhhhhHHHHHHhCcccccHHHHHH
Q 044478           19 KESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDE   98 (232)
Q Consensus        19 ~~~~R~~a~~~PsiW~d~fl~~~~~~~~~~~~~~~~~~LkeeVr~ml~~~~~d~~~~~L~lID~lqRLGI~yhFe~EI~~   98 (232)
                      ....||+||||||+|||+||++ +.....+.+.+++++||+|||+||.+...|++ ++|+|||+||||||+|||++||++
T Consensus        18 ~~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~-~~l~lID~lqrLGi~~hF~~EI~~   95 (554)
T 3g4d_A           18 KDEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMANST-QKLAFIDSVQRLGVSYHFTKEIED   95 (554)
T ss_dssp             -------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSSHH-HHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred             CCCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHcCchhhhHHHHHH
Confidence            3446999999999999999998 43323347899999999999999975346899 999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCcccchhhHHHHHHHHhhcccccccccccccccccccccccchhhcHHHHHHHHHHhhcCCCC
Q 044478           99 ILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHG  178 (232)
Q Consensus        99 ~L~~i~~~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~~DvF~~Fkd~~G~Fk~~l~~Dv~glLsLYeAS~L~~~g  178 (232)
                      +|++||+. . .  ..+.   |||+|||+|||||||||+|| ||||++|+|++|+|++++.+||+|||+|||||||+++|
T Consensus        96 ~L~~i~~~-~-~--~~~~---dl~~~al~FRlLR~hGy~VS-~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~g  167 (554)
T 3g4d_A           96 ELENIYHN-N-N--DAEN---DLYTTSIRFRLLREHGYNVS-CDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHG  167 (554)
T ss_dssp             HHHHHHHS-C-C--CTTC---CHHHHHHHHHHHHHTTCCCC-GGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHhc-c-C--CCCC---CHHHHHHHHHHHHhcCCCCC-hhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCC
Confidence            99999986 2 1  1224   99999999999999999999 99999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHcCCCCCCCCChhHHhhcccCC
Q 044478          179 ENILNEALTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY  232 (232)
Q Consensus       179 E~iLdeA~~Ft~~~L~~~~~~~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y  232 (232)
                      |+|||+|+.||+++|++.++.++++|+++|+|||++|+||++|||||||||++|
T Consensus       168 E~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y  221 (554)
T 3g4d_A          168 EDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVY  221 (554)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHh
Confidence            999999999999999998887888999999999999999999999999999987
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 232
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 1e-66
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-64
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  201 bits (514), Expect = 1e-66
 Identities = 85/202 (42%), Positives = 130/202 (64%), Gaps = 11/202 (5%)

Query: 32  IWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYH 91
           +WGD FLS++ D + +   + + + LK++ R+ML A   K +   L+LID I+RLG+SYH
Sbjct: 1   LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLAD-TLNLIDIIERLGISYH 59

Query: 92  FESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSN 151
           FE EIDEIL +++  N +C+        +L   +LQFRLLRQ+G+ IS  ++F+ F+D N
Sbjct: 60  FEKEIDEILDQIYNQNSNCN--------DLCTSALQFRLLRQHGFNISP-EIFSKFQDEN 110

Query: 152 GNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSNTQLAAQVNRA 211
           G FK  L  D+ G+L+LYEA+H+R H ++IL +AL F+  HLES      + L  QV  A
Sbjct: 111 GKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHA 170

Query: 212 LNRPIRKSLPRLEAKHYM-PIY 232
           L + + K +PR+E + ++  IY
Sbjct: 171 LEQCLHKGVPRVETRFFISSIY 192
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=7.3e-75  Score=496.78  Aligned_cols=191  Identities=44%  Similarity=0.766  Sum_probs=179.1

Q ss_pred             CccccccccCCCCccchhHHHHHHHHHHHHHHHHHhccCCccchhhhhHHHHHHhCcccccHHHHHHHHHHHHhhccCCC
Q 044478           32 IWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCD  111 (232)
Q Consensus        32 iW~d~fl~~~~~~~~~~~~~~~~~~LkeeVr~ml~~~~~d~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~  111 (232)
                      +|||+||++.++....+.+.+++++||++||+||.+...++. ++|+|||+||||||+|||++||+++|+.||+.|.   
T Consensus         1 iWgd~Fl~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~-~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~---   76 (197)
T d5easa1           1 LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLA-DTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS---   76 (197)
T ss_dssp             CCGGGGSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTCCHH-HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCC---
T ss_pred             CCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHcccCHH-HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC---
Confidence            799999998665434348999999999999999987557899 9999999999999999999999999999999875   


Q ss_pred             CCCCCcccchhhHHHHHHHHhhcccccccccccccccccccccccchhhcHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 044478          112 LGDDENVQELYYISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVT  191 (232)
Q Consensus       112 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~~DvF~~Fkd~~G~Fk~~l~~Dv~glLsLYeAS~L~~~gE~iLdeA~~Ft~~  191 (232)
                        ...   |||+|||+|||||||||+|| ||||++|+|++|+|++++.+||+|||+|||||||+++||+|||+|+.||++
T Consensus        77 --~~~---dl~~~AL~FRLLRqhGy~Vs-~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~  150 (197)
T d5easa1          77 --NCN---DLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTI  150 (197)
T ss_dssp             --CCC---SHHHHHHHHHHHHHTTCCCC-GGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHH
T ss_pred             --CCC---cHHHHHHHHHHHHHcCcccC-HHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence              234   99999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCChhHHHHHHHHcCCCCCCCCChhHHhhccc-CC
Q 044478          192 HLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMP-IY  232 (232)
Q Consensus       192 ~L~~~~~~~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~-~Y  232 (232)
                      +|++.+++++++|+++|.|||++|+||+||||||||||+ +|
T Consensus       151 ~L~~~~~~~~~~l~~~V~~aL~~P~h~~l~rleaR~yI~~~Y  192 (197)
T d5easa1         151 HLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIY  192 (197)
T ss_dssp             HHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTG
T ss_pred             HHHHHHhhcCccHHHHHHHHhCCCccCCCcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999995 66
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure