Citrus Sinensis ID: 044488

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MNPRNNEYDVSVMASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH
Secondary Structure (PSIPRED)
cccccccccccEEccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHcHHHHHHccccccccccccEEEEEcccccHcHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccccc
Coil and Loop (DISEMBL)
mnprnneydvsvmassspsprnsnkhgiflsfrgedtrdnFTSHLYSALCHNnietfidndlkrgdEISQSLLDTIEASTISIIIFSeryassgwcLDELLKILEckhdygqivipvfcrvdpsh
Flexible Loop (DISEMBL)
mnprnneydvsvmassspsprnsNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH
Low Complexity Region (SEG)
MNPRNNEYDVSVMASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH
Disordered region (IsUnstruct)
***************************IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRV****
Disordered Region (DISOPRED)
*************************HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS*
Disordered Region (DISEMBL)
**********************SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH
Disordered Region (DISPRO)
*********************NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPRNNEYDVSVMASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.8	0.087	0.544	6e-25
O82500	1095	Putative disease resistan	no	no	0.872	0.099	0.508	2e-24
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.864	0.083	0.477	8e-21
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.752	0.228	0.463	2e-16
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.864	0.305	0.4	4e-16
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.864	0.275	0.431	1e-14
Q9SYC9	571	Vesicle-associated protei	no	no	0.856	0.187	0.356	7e-13
Q9FL92	1372	Probable WRKY transcripti	no	no	0.672	0.061	0.326	2e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 26  HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISII 84
           + +FLSFRGEDTR  FTSHLY  L    I+TF D+  L+ G  I   L   IE S  +I+
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 85  IFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
           +FSE YA+S WCL+EL+KI+ECK  + Q VIP+F  VDPSH
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSH 112

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 3/112 (2%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           MASSS    NS ++ +F SFRGED R+NF SHL        I TF D+ +KR   I   L
Sbjct: 1   MASSSS---NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHEL 57

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
              I  S IS+++FSE YASS WCLDEL++I++CK + G  V+PVF +VDPS
Sbjct: 58  RAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPS 109

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 74/113 (65%), Gaps = 5/113 (4%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           +ASSS     S ++ +F SFRGED RD+F SHL   L    I TFID++++R   I   L
Sbjct: 3   IASSS----GSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPEL 57

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
           L  I+ S I+I+IFS+ YASS WCL+EL++I +C  +  Q+VIP+F  VD S 
Sbjct: 58  LSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASE 110

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 28  IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFS 87
           +F++FRG+D R  F S L  AL    I  FID   +RG  +  SL DTI  S I+++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 88  ERYASSGWCLDELLKILECKHDYGQIVIPVFCRVD 122
           E Y  S WC+DEL+KI E       I+IP+F R+D
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLD 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 7/115 (6%)

Query: 13  MASSS---PSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEIS 69
           MA+SS   P+P       +F++FRG+D R+ F S L  A+   NI  FID D   G ++ 
Sbjct: 1   MAASSSVRPTPTGPQ---VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV 57

Query: 70  QSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
            +L   I+ S ++++IFS+ Y SS WCLDEL +I +C +  G   IP+F ++ PS
Sbjct: 58  -NLFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPS 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/116 (43%), Positives = 66/116 (56%), Gaps = 8/116 (6%)

Query: 13  MASSS----PSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEI 68
           MASSS    P+P       +F+ FRG D R +F S L  AL   NI  FID +   G E+
Sbjct: 1   MASSSSVVKPTPTGPQ---VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEM 57

Query: 69  SQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
           + +LL  IE S ++++IFS  +  S  CL+EL KI E K     IVIP+F +V PS
Sbjct: 58  A-NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPS 112

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 8/115 (6%)

Query: 17  SPSPRNSNKHGI-------FLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEIS 69
           S +  +++ HGI       F++FRG++ R++F   L  A+    I  F D    RG  ++
Sbjct: 342 SNAASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN 401

Query: 70  QSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
             L   IE S +++ IFSERY  S WCLDEL+K+ E       +V+PVF R++ +
Sbjct: 402 Y-LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNAT 455

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 35  EDTRDNFTSHLYSALCHNNI-ETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASS 93
           E+ R +F SHL  AL    + + FID+D    D +S      +E + +S++I       S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 94  GWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
              LD+L+K+L+C+ +  Q+V+PV   V  S 
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSE 98

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255569048	1084	leucine-rich repeat-containing protein,	0.88	0.101	0.669	8e-36
224169680	120	predicted protein [Populus trichocarpa]	0.888	0.925	0.660	1e-35
224165730	162	predicted protein [Populus trichocarpa]	0.888	0.685	0.657	2e-34
351722793	299	TIR-NBS-LRR type disease resistance prot	0.904	0.377	0.584	5e-34
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.888	0.088	0.651	7e-34
255561496	876	TMV resistance protein N, putative [Rici	0.872	0.124	0.642	1e-33
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.888	0.077	0.642	2e-33
224145362	155	predicted protein [Populus trichocarpa]	0.808	0.651	0.673	2e-33
224143574	158	predicted protein [Populus trichocarpa]	0.808	0.639	0.673	3e-33
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.888	0.075	0.642	5e-33

>gi|255569048|ref|XP_002525493.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223535172|gb|EEF36851.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 90/112 (80%), Gaps = 2/112 (1%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           MASSS SP+   K  +FLSFRG+DTRDNFTSHLY ALC   I+TFIDN L+RG+EI+ +L
Sbjct: 1   MASSSNSPKR--KFDVFLSFRGKDTRDNFTSHLYDALCRKKIKTFIDNGLERGEEITPAL 58

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
           L TIE S IS+I+FSE YASS WCLDE++KILEC+  +GQ V+PVF  VDPS
Sbjct: 59  LRTIEESLISVIVFSENYASSPWCLDEMVKILECRETHGQAVLPVFYHVDPS 110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224169680|ref|XP_002339290.1| predicted protein [Populus trichocarpa] gi|222874825|gb|EEF11956.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 91/112 (81%), Gaps = 1/112 (0%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           MASSS +  +  K+ +FLSFRG+DTR+NFTSHLY ALC   I+TFIDN L+RG+EI+ +L
Sbjct: 1   MASSS-AVAHKWKYDVFLSFRGQDTRNNFTSHLYDALCRKKIKTFIDNGLERGEEITPAL 59

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
           L TIE S IS++IFS+ YASS WC+DEL+KILECK  YGQIV+PVF  VDPS
Sbjct: 60  LKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVDPS 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224165730|ref|XP_002338849.1| predicted protein [Populus trichocarpa] gi|222873666|gb|EEF10797.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 90/114 (78%), Gaps = 3/114 (2%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           MASSS + +   K+ +FLSFRG+DTRDNFTSHLY ALCH  I+TFIDNDL+RG+EI  +L
Sbjct: 1   MASSSTTAQQW-KYDVFLSFRGKDTRDNFTSHLYDALCHKQIKTFIDNDLERGEEIEPTL 59

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIP--VFCRVDPS 124
           L TIE S IS++IFS+ YASS WC+DEL+KILECK   GQIV+P   F  VDPS
Sbjct: 60  LRTIEDSRISVVIFSKNYASSPWCVDELVKILECKRTCGQIVLPGFFFYHVDPS 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/118 (58%), Positives = 89/118 (75%), Gaps = 5/118 (4%)

Query: 13  MASSSPSPRNSNK-----HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDE 67
           MAS  P P  ++K     H +FLSFRGEDTR  FTSHLY+AL    ++T+IDN+L+RGDE
Sbjct: 1   MASFVPPPPFTSKTPQQVHDVFLSFRGEDTRYTFTSHLYAALTRLQVKTYIDNELERGDE 60

Query: 68  ISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
           IS SLL  I+ + +++I+FSE YASS WCLDEL+KI+ECK   GQI++PVF  VDP+H
Sbjct: 61  ISPSLLRAIDDAKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTH 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 89/112 (79%), Gaps = 1/112 (0%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           MASSS S  +  K+ +FLSFRGEDTR+NFTSHLY ALC   I+TFID+ L+RG+EI+ +L
Sbjct: 1   MASSS-SVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPAL 59

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
           L  IE S IS++IFS+ YASS WC+DEL+KILECK   GQIV+PVF  VDPS
Sbjct: 60  LKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPS 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 83/109 (76%)

Query: 17  SPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTI 76
           +P   +  K+ +FLSFRGEDTRDNFTSHLYSAL    I TF+D ++KRG+EIS S+   I
Sbjct: 2   APLATSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAI 61

Query: 77  EASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
           + S +S+IIFSE+YA S WCLDEL KILECK   GQIVIPVF RVDP H
Sbjct: 62  KGSKLSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVH 110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 90/112 (80%), Gaps = 1/112 (0%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           MASSS +  +  K+ +FLSFRG+DTR+NFTSHLY ALC   I+TFID+ L+RG EI+ +L
Sbjct: 1   MASSS-AVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPAL 59

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
           L TIE S IS++IFS+ YASS WC+DEL+KILECK  YGQIV+PVF  V+PS
Sbjct: 60  LKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPS 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145362|ref|XP_002325614.1| predicted protein [Populus trichocarpa] gi|222862489|gb|EEE99995.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 81/101 (80%)

Query: 25  KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 84
           K+ +FLSFRGEDTR  FTSHLY+AL    I TFID  L RGDEIS+SLL TIE + +S+I
Sbjct: 9   KYDVFLSFRGEDTRVGFTSHLYAALDRKQIRTFIDYQLVRGDEISESLLRTIEEAKLSVI 68

Query: 85  IFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
           +FSE YASS WCL+EL+KI EC+ + GQIVIPVF +VDPSH
Sbjct: 69  VFSENYASSKWCLEELVKIFECRKNNGQIVIPVFYQVDPSH 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143574|ref|XP_002336057.1| predicted protein [Populus trichocarpa] gi|222869690|gb|EEF06821.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 80/101 (79%)

Query: 25  KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 84
           KH +FLSFRGEDTR  FTSHLY+AL    I TFID  L+RGDEIS SLL TIE + +S+I
Sbjct: 17  KHDLFLSFRGEDTRVGFTSHLYAALDRKQIRTFIDYQLRRGDEISASLLRTIEEAKLSVI 76

Query: 85  IFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
           +FSE YASS WCL+EL KI+E + + GQIVIPVF +VDPSH
Sbjct: 77  VFSENYASSKWCLEELAKIIERRRNNGQIVIPVFYKVDPSH 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           M SSS   +   K+ +FLSFRG+DTRDNF SHL  ALC   I+TFID+ L+RG+EI+ +L
Sbjct: 1   MVSSSAVAQKW-KYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGAL 59

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
           L TIE S IS+IIFS  YASS WC+DEL+KILECK  YGQIV+PVF  VDPS
Sbjct: 60  LRTIEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPS 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.864	0.088	0.544	9.9e-25
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.888	0.097	0.552	2.4e-24
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.968	0.101	0.475	6.8e-24
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.784	0.313	0.525	2.3e-23
TAIR|locus:2010738	1007	WRR4 "WHITE RUST RESISTANCE 4"	0.896	0.111	0.504	6.2e-23
TAIR|locus:2024588	997	RLM1 "RESISTANCE TO LEPTOSPHAE	0.896	0.112	0.508	7.8e-23
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.872	0.099	0.508	1.5e-22
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.912	0.095	0.465	2.1e-22
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.896	0.099	0.495	2.5e-22
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.888	0.098	0.464	3.2e-22

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 9.9e-25, P = 9.9e-25
 Identities = 61/112 (54%), Positives = 81/112 (72%)

Query:    13 MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
             M SSSPS   S +  +FLSFRG DTR+NFT HL  AL    I++FID+ L+RGD ++ +L
Sbjct:     1 MESSSPS---SAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-AL 56

Query:    73 LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
              D IE S I+II+FS  YA+S WCL EL+KILEC++   Q+V+P+F +VD S
Sbjct:    57 FDRIEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKS 108

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 291 (107.5 bits), Expect = 2.4e-24, P = 2.4e-24
 Identities = 63/114 (55%), Positives = 77/114 (67%)

Query:    13 MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQS 71
             MASSS S R S  + +FLSFRGEDTR  FTSHLY  L    I+TF D+  L+ G  I   
Sbjct:     1 MASSSSSSRWS--YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    72 LLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
             L   IE S  +I++FSE YA+S WCL+EL+KI+ECK  + Q VIP+F  VDPSH
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSH 112

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 58/122 (47%), Positives = 74/122 (60%)

Query:     4 RNNEYDVSVMASSSPSPRNSN-KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDL 62
             RN     S+ +SS PS  + N  H +FLSFRGED R    SH+      N I  FIDN++
Sbjct:    17 RNKNISSSLSSSSPPSSLSQNWLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEM 76

Query:    63 KRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVD 122
             KRG  I   LL  I  S I+II+ S  Y SS WCLDEL++I++C+ + GQ V+ VF  VD
Sbjct:    77 KRGGSIGPELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVD 136

Query:   123 PS 124
             PS
Sbjct:   137 PS 138

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 52/99 (52%), Positives = 67/99 (67%)

Query:    25 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 84
             KH +F+SFR +DTRDNF SHL   L    I+TF+ ++L   DE  +  L  IE S IS+I
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELP-ADERYEESLKAIEVSKISVI 66

Query:    85 IFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDP 123
             +FSE +  S WCLDE++ IL+CK  +GQIVIPV   VDP
Sbjct:    67 VFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDP 105

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2010738 WRR4 "WHITE RUST RESISTANCE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 6.2e-23, P = 6.2e-23
 Identities = 57/113 (50%), Positives = 73/113 (64%)

Query:    13 MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
             MASSS SPRN  ++ +F SF G D R  F SHL     +N I  F DN ++R   I+ +L
Sbjct:     1 MASSSSSPRNW-RYNVFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPAL 59

Query:    73 LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
                I  S ++I++ S+ YASS WCLDELL+IL+CK   GQIV+ VF  VDPSH
Sbjct:    60 KKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSH 112

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2024588 RLM1 "RESISTANCE TO LEPTOSPHAERIA MACULANS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 57/112 (50%), Positives = 72/112 (64%)

Query:    13 MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
             MASSS S   + ++ +F SF G D R +F SH      +N I  F D  + RG+ IS +L
Sbjct:     1 MASSSSSASRTWRYRVFTSFHGSDVRTSFLSHFRKQFNNNGITMFDDQRILRGETISPAL 60

Query:    73 LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
                I  S ISI++ S+ YASSGWCLDELL+IL+CK D GQIV+ VF  VDPS
Sbjct:    61 TQAIRESRISIVLLSKNYASSGWCLDELLEILKCKDDMGQIVMTVFYGVDPS 112

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 57/112 (50%), Positives = 73/112 (65%)

Query:    13 MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
             MASSS    NS ++ +F SFRGED R+NF SHL        I TF D+ +KR   I   L
Sbjct:     1 MASSSS---NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHEL 57

Query:    73 LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
                I  S IS+++FSE YASS WCLDEL++I++CK + G  V+PVF +VDPS
Sbjct:    58 RAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPS 109

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/116 (46%), Positives = 74/116 (63%)

Query:    11 SVMASSSPSPRNSN--KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEI 68
             S+  SS P P +S    H +F SF GED R +F SH+        I  F+DN++KRG+ I
Sbjct:    45 SLSPSSVPPPSSSCIWTHQVFPSFSGEDVRRDFLSHIQMEFQRMGITPFVDNEIKRGESI 104

Query:    69 SQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
                LL  I  S I+II+ S  YASS WCLDEL++I++C+ +YGQ V+ +F +VDPS
Sbjct:   105 GPELLRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEYGQTVMAIFYKVDPS 160

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 56/113 (49%), Positives = 75/113 (66%)

Query:    13 MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
             MASSS S RN + + +F SF GED R  F SH    L   +I TF DN+++R   I+  L
Sbjct:     1 MASSSSSSRNWS-YDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPEL 59

Query:    73 LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
             ++ I+ S I++I+FS+ YASS WCL+ELL+I+ C    GQ VIPVF  +DPSH
Sbjct:    60 VEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSH 112

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 52/112 (46%), Positives = 75/112 (66%)

Query:    14 ASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLL 73
             +SSS S RN + H +F SF GED R+ F SH    L    I +F DN+++R   +   L 
Sbjct:     3 SSSSSSSRNWSYH-VFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPELK 61

Query:    74 DTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
               I  S I++++FS+ YASS WCL+ELL+I++CK ++GQ+VIP+F  +DPSH
Sbjct:    62 HGIRNSRIAVVVFSKTYASSSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSH 113

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam01582	135	pfam01582, TIR, TIR domain	8e-33
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-32
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	1e-29
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-15
pfam13676	102	pfam13676, TIR_2, TIR domain	8e-12

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  111 bits (280), Expect = 8e-33
 Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 3/100 (3%)

Query: 29  FLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASTISIIIFS 87
           F+SF G+D RD F SHL   L    I+  ID+ D   G+ I ++L + IE S  +I+IFS
Sbjct: 2   FVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFS 61

Query: 88  ERYASSGWCLDELLKILECKHDYG--QIVIPVFCRVDPSH 125
             YASS WCLDEL++I++C  + G  ++++P+F +VDPS 
Sbjct: 62  SNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSD 101

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  117 bits (295), Expect = 8e-32
 Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 72
           MASSS S RN     +F SF GED R  F SH    L    I  F DN+++R   +   L
Sbjct: 1   MASSSSSSRNWVYD-VFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPEL 59

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
              I  S I++++FS+ YASS WCL+ELL+I+ CK + GQ+VIPVF  +DPSH
Sbjct: 60  KQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSH 112

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  103 bits (259), Expect = 1e-29
 Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 25  KHGIFLSFRG-EDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISI 83
           ++ +F+S+ G ED R+ F SHL   L    +  FID+    G ++ + + + IE S I+I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAI 59

Query: 84  IIFSERYASSGWCLDELLKILECKHDYGQI-VIPVFCRVDPSH 125
           ++ S  YA S WCLDEL+  LE   + G + VIP+F  V PS 
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSD 102

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 19  SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIE 77
           S  ++    +F++ RG DT+    + LY  L   N+  F+DN ++K GD++   +   I 
Sbjct: 20  SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR 79

Query: 78  ASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
              + + +FS RY  S +CL EL  I+E K    + VIP+FC V PS
Sbjct: 80  NCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPS 122

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 56.8 bits (138), Expect = 8e-12
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 28  IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFS 87
           +F+S+   D    +   L  AL    I  ++D D+  G++    + + + ++ + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 88  ERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
             Y +S WC  E    LE     G+ +IPV  R++  
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV--RLEDC 89

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.9
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.89
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.84
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.4
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.94
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.33
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.51
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	95.74
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	95.13
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	95.11
COG4271	233	Predicted nucleotide-binding protein containing TI	93.49
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	89.3
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	86.61
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	85.88
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	82.04
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	81.68
cd00858	121	GlyRS_anticodon GlyRS Glycyl-anticodon binding dom	80.65

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=5.2e-35  Score=213.25  Aligned_cols=99  Identities=36%  Similarity=0.719  Sum_probs=93.5

Q ss_pred             CCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHH
Q 044488           23 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELL  101 (125)
Q Consensus        23 ~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~  101 (125)
                      ++.|||||||++.|+++.|+.||+.+|+++||++|+|+. +++|+.+.+.|.+||++|+++|+|||++|++|.||++||.
T Consensus        24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~  103 (187)
T PLN03194         24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA  103 (187)
T ss_pred             CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence            346999999999999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhCCCEEEEEEeecCCCC
Q 044488          102 KILECKHDYGQIVIPVFCRVDPSH  125 (125)
Q Consensus       102 ~~~~~~~~~~~~IiPI~~~v~ps~  125 (125)
                      .|+++.    ..||||||+|+|+|
T Consensus       104 ~I~e~~----~~ViPIFY~VdPsd  123 (187)
T PLN03194        104 LIMESK----KRVIPIFCDVKPSQ  123 (187)
T ss_pred             HHHHcC----CEEEEEEecCCHHH
Confidence            999853    38999999999975

>PLN03210 Resistant to P

Probab=99.97  E-value=3.8e-31  Score=234.61  Aligned_cols=112  Identities=46%  Similarity=0.791  Sum_probs=105.0

Q ss_pred             ecccCCCCCCCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccC
Q 044488           13 MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS   92 (125)
Q Consensus        13 ~~~s~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~   92 (125)
                      ||||| |+++.++|||||||+|+|+++.|+.||+++|.++||++|.|++++.|+.+..++.+||++|++.|+|||++|++
T Consensus         1 ~~~~~-~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~   79 (1153)
T PLN03210          1 MASSS-SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS   79 (1153)
T ss_pred             CCCCC-CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence            45554 44567999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhhhhCCCEEEEEEeecCCCC
Q 044488           93 SGWCLDELLKILECKHDYGQIVIPVFCRVDPSH  125 (125)
Q Consensus        93 S~wc~~El~~~~~~~~~~~~~IiPI~~~v~ps~  125 (125)
                      |.||++||+.|++++++.++.||||||+|+|+|
T Consensus        80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~  112 (1153)
T PLN03210         80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSH  112 (1153)
T ss_pred             chHHHHHHHHHHHhhhhcCceEEEEEecccHHH
Confidence            999999999999999989999999999999985

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.90  E-value=1.4e-23  Score=145.16  Aligned_cols=98  Identities=40%  Similarity=0.688  Sum_probs=83.8

Q ss_pred             eeeEEEecee-ccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHH
Q 044488           25 KHGIFLSFRG-EDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKI  103 (125)
Q Consensus        25 ~yDVFISys~-~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~  103 (125)
                      +|||||||++ .+..+.|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+++|++|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            4899999998 34456899999999999999999987643333333 999999999999999999999999999999999


Q ss_pred             HHhhhh-CCCEEEEEEeecCC
Q 044488          104 LECKHD-YGQIVIPVFCRVDP  123 (125)
Q Consensus       104 ~~~~~~-~~~~IiPI~~~v~p  123 (125)
                      .+...+ ...+||||+++..|
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~  100 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIP  100 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecCh
Confidence            987654 66799999998654

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.89  E-value=2.3e-24  Score=150.81  Aligned_cols=97  Identities=35%  Similarity=0.649  Sum_probs=85.2

Q ss_pred             EEEeceeccCcccHHHHHHHHHccC--CeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHH
Q 044488           28 IFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKIL  104 (125)
Q Consensus        28 VFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~  104 (125)
                      |||||++.+.+..|+++|.++|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|.||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333468999999999999  999999887 9999999999999999999999999999999999999999999


Q ss_pred             HhhhhC--CCEEEEEEeecCCC
Q 044488          105 ECKHDY--GQIVIPVFCRVDPS  124 (125)
Q Consensus       105 ~~~~~~--~~~IiPI~~~v~ps  124 (125)
                      ++..+.  ...|+|||+++.++
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~  102 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPS  102 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CH
T ss_pred             hhccccccccceeeEeccCChh
Confidence            987653  48999999998764

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.84  E-value=1e-21  Score=129.98  Aligned_cols=87  Identities=31%  Similarity=0.553  Sum_probs=75.2

Q ss_pred             EEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhh
Q 044488           28 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK  107 (125)
Q Consensus        28 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~  107 (125)
                      |||||+++|.  .+|..|...|+..|+++|+|.++.+|+.+.+.|.++|++|+.+|+++|++|..|+||..|+..+.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999994  699999999999999999997799999999999999999999999999999999999999999843  


Q ss_pred             hhCCCEEEEEEee
Q 044488          108 HDYGQIVIPVFCR  120 (125)
Q Consensus       108 ~~~~~~IiPI~~~  120 (125)
                        .+.+||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              44589999975

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.40  E-value=8.3e-13  Score=108.38  Aligned_cols=92  Identities=27%  Similarity=0.441  Sum_probs=79.5

Q ss_pred             CCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccC--------
Q 044488           22 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYAS--------   92 (125)
Q Consensus        22 ~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~--------   92 (125)
                      -.++.||||||+..- ...+++-|.-.|..+|++||+|-+ +..|+ +.+.+...|..++.+|+|++|+.+.        
T Consensus       609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            346799999998764 467999999999999999999998 98887 5568889999999999999999863        


Q ss_pred             chhhHHHHHHHHHhhhhCCCEEEEEEe
Q 044488           93 SGWCLDELLKILECKHDYGQIVIPVFC  119 (125)
Q Consensus        93 S~wc~~El~~~~~~~~~~~~~IiPI~~  119 (125)
                      -+|+.+||..++++.+    .|||||-
T Consensus       687 eDWVHKEl~~Afe~~K----NIiPI~D  709 (832)
T KOG3678|consen  687 EDWVHKELKCAFEHQK----NIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHHhcC----Ceeeeec
Confidence            6899999999988766    7999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.94  E-value=2.2e-09  Score=74.32  Aligned_cols=89  Identities=22%  Similarity=0.374  Sum_probs=47.9

Q ss_pred             eeEEEeceeccCcccHHHHHHHHHccC-------Ceee-E---------EeCC-CCCCccchHHHHHHHHhcceEEEEec
Q 044488           26 HGIFLSFRGEDTRDNFTSHLYSALCHN-------NIET-F---------IDND-LKRGDEISQSLLDTIEASTISIIIFS   87 (125)
Q Consensus        26 yDVFISys~~D~~~~fv~~L~~~L~~~-------Gi~v-f---------~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS   87 (125)
                      |.|||||++.|.. ..+..|...+...       .+.. |         .+.. ....+.+...|.++|..|+++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999999853 3677777776652       1211 1         1111 22344788999999999999999999


Q ss_pred             CCccCchhhHHHHHHHHHhhhhCCCEEEEEEe
Q 044488           88 ERYASSGWCLDELLKILECKHDYGQIVIPVFC  119 (125)
Q Consensus        88 ~~~~~S~wc~~El~~~~~~~~~~~~~IiPI~~  119 (125)
                      ++...|.|+..|+..+++    .+..||-|.+
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~  107 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL  107 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence            999999999999999876    4557888875

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.33  E-value=3.8e-06  Score=58.85  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             eEEEeceeccCcc-cHHHHHHHHHccC-CeeeEEeCC-CC--CCccchHHHHHHHHhcceEEEEecCCc
Q 044488           27 GIFLSFRGEDTRD-NFTSHLYSALCHN-NIETFIDND-LK--RGDEISQSLLDTIEASTISIIIFSERY   90 (125)
Q Consensus        27 DVFISys~~D~~~-~fv~~L~~~L~~~-Gi~vf~d~~-~~--~G~~~~~~i~~aI~~s~~~IvvlS~~~   90 (125)
                      -|||||++....+ ..|..|...|+.. |+.|.+|.. ..  .+..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            4999999854432 6788999999999 999999976 53  355666667788999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.51  E-value=0.00037  Score=48.28  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=60.4

Q ss_pred             eEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCc-------------cC
Q 044488           27 GIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERY-------------AS   92 (125)
Q Consensus        27 DVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~-------------~~   92 (125)
                      .|||.|+ .|  ...+..+...|+..|+.+.+=.. ...|..+.+.+.+.+.+|+..|++++|+=             ..
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 55  36888999999988877654333 78899999999999999999999999852             22


Q ss_pred             chhhHHHHHHHHHh
Q 044488           93 SGWCLDELLKILEC  106 (125)
Q Consensus        93 S~wc~~El~~~~~~  106 (125)
                      .+-++.|+..++.+
T Consensus        78 R~NVifE~G~f~g~   91 (125)
T PF10137_consen   78 RQNVIFELGLFIGK   91 (125)
T ss_pred             ccceeehhhHHHhh
Confidence            34567788888763

Their exact function has not, as yet, been defined.

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=95.74  E-value=0.011  Score=45.83  Aligned_cols=100  Identities=14%  Similarity=0.071  Sum_probs=68.3

Q ss_pred             ccCCCCCCCCeeeEEEeceeccCcccHHHHHHHHHccC--CeeeEEeCC----CCCCccchHHHHHHH-HhcceEEEEec
Q 044488           15 SSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND----LKRGDEISQSLLDTI-EASTISIIIFS   87 (125)
Q Consensus        15 ~s~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~----~~~G~~~~~~i~~aI-~~s~~~IvvlS   87 (125)
                      .+......++.||+=+||.++-  +.+|+....+++..  -...|+|-.    +-+|. +.+-+...- ..|++.+|.+.
T Consensus       167 ~~~~Vd~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~  243 (329)
T COG4916         167 TVTVVDSSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNT  243 (329)
T ss_pred             eeeeecccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeC
Confidence            3444557788999999999875  47999999999843  356777753    33443 222222211 36889999999


Q ss_pred             CCccCchhhHHHHHHHHHhhhhCCCEEEEEEe
Q 044488           88 ERYASSGWCLDELLKILECKHDYGQIVIPVFC  119 (125)
Q Consensus        88 ~~~~~S~wc~~El~~~~~~~~~~~~~IiPI~~  119 (125)
                      .+|....||.-|...+-....  -+.+.||.|
T Consensus       244 ~~Y~~K~~c~~E~~~~r~~~~--~d~~~rI~~  273 (329)
T COG4916         244 GSYICKSTCHIEGLEGRLNPI--LDTGFRIKY  273 (329)
T ss_pred             CceEEeeeeccchhhcccccc--ccccceEEE
Confidence            999999999999877644222  235666665

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=95.13  E-value=0.089  Score=33.44  Aligned_cols=63  Identities=19%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             EEEeceeccCcccHHHHHHHHHccCCeeeEEeCCC-CCCccchHHHHHHHHhcceEEEEecCCcc
Q 044488           28 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDL-KRGDEISQSLLDTIEASTISIIIFSERYA   91 (125)
Q Consensus        28 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~-~~G~~~~~~i~~aI~~s~~~IvvlS~~~~   91 (125)
                      ||||=.-.|- +.--..|.+.|.+.|.....-+.+ ..+....+.+.+.|++|+++|.++...|=
T Consensus         2 VFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG   65 (83)
T PF13271_consen    2 VFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYG   65 (83)
T ss_pred             EEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccC
Confidence            8998766664 234456777777777655443332 33555667889999999999999998884

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=95.11  E-value=0.25  Score=32.83  Aligned_cols=68  Identities=21%  Similarity=0.107  Sum_probs=49.6

Q ss_pred             ccHHHHHHHHHccCCeeeEEeCC--CC---CCcc----chHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhh
Q 044488           39 DNFTSHLYSALCHNNIETFIDND--LK---RGDE----ISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK  107 (125)
Q Consensus        39 ~~fv~~L~~~L~~~Gi~vf~d~~--~~---~G~~----~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~  107 (125)
                      ..+...+.+.|+++|+.+|...+  ..   .+..    +.+.-.++|++|+++|+++.+.- .+.=+..|+..+....
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~alg   89 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALG   89 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCC
Confidence            56888999999999999987653  21   2223    33444568999999999998765 6677888999987643

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=93.49  E-value=0.35  Score=36.32  Aligned_cols=76  Identities=16%  Similarity=0.143  Sum_probs=58.0

Q ss_pred             eEEEeceeccCcccHHHHHHHHHc-cCC-eeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCcc-------------
Q 044488           27 GIFLSFRGEDTRDNFTSHLYSALC-HNN-IETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA-------------   91 (125)
Q Consensus        27 DVFISys~~D~~~~fv~~L~~~L~-~~G-i~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~-------------   91 (125)
                      .|||-|++.    ..+.....+|+ +.. ..+|.|.-+..|..+.+.+++-|++.+..|++.+|+=.             
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            999999764    36666666665 333 45777766889999999999999999999999999843             


Q ss_pred             -CchhhHHHHHHHHHh
Q 044488           92 -SSGWCLDELLKILEC  106 (125)
Q Consensus        92 -~S~wc~~El~~~~~~  106 (125)
                       ...-+..||..++.+
T Consensus       160 raRqNVifELGm~mgr  175 (233)
T COG4271         160 RARQNVIFELGMFMGR  175 (233)
T ss_pred             cccccchhhHhhHHhh
Confidence             133467788887763

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=89.30  E-value=2  Score=27.96  Aligned_cols=61  Identities=11%  Similarity=-0.015  Sum_probs=41.6

Q ss_pred             HHHHHHHccCCeeeEEeCCC--CCCccchHH---HHHHHHhcceEEEEecCCccCchhhHHHHHHHHH
Q 044488           43 SHLYSALCHNNIETFIDNDL--KRGDEISQS---LLDTIEASTISIIIFSERYASSGWCLDELLKILE  105 (125)
Q Consensus        43 ~~L~~~L~~~Gi~vf~d~~~--~~G~~~~~~---i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~  105 (125)
                      ....+.|+..|..|.-.-.+  ..|.++.+-   -...|..|+.+++  =|++..|.=|+-|...+..
T Consensus        19 ~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~E~~~A~~   84 (92)
T PF14359_consen   19 NAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARLEHELAKK   84 (92)
T ss_pred             HHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHHHHHHHHH
Confidence            45778889999766533223  455555433   3345667775554  4999999999999988865

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=86.61  E-value=3.7  Score=25.33  Aligned_cols=60  Identities=7%  Similarity=0.172  Sum_probs=38.1

Q ss_pred             eeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCC
Q 044488           26 HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER   89 (125)
Q Consensus        26 yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~   89 (125)
                      ++|+|...+.+. ...+..+...|++.|+++-+|..   +..+..++..|-..---+++++.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcc
Confidence            677777654432 35677899999999999988753   3455556655544333345555544

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=85.88  E-value=5.4  Score=23.97  Aligned_cols=60  Identities=17%  Similarity=0.192  Sum_probs=35.9

Q ss_pred             HHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhhhhCCCEEE
Q 044488           44 HLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVI  115 (125)
Q Consensus        44 ~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~Ii  115 (125)
                      .|+..|++.|++|-....          ..++++..+..+++++|.+.-+.  ..++..+.+..+++++.||
T Consensus         9 a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    9 ALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            467778888988744221          12244557888999999966553  3444444444444555443

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=82.04  E-value=6  Score=24.45  Aligned_cols=61  Identities=13%  Similarity=0.185  Sum_probs=38.6

Q ss_pred             eeEEEeceecc--CcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCC
Q 044488           26 HGIFLSFRGED--TRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER   89 (125)
Q Consensus        26 yDVFISys~~D--~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~   89 (125)
                      ++|+|-..+.+  .....+..+...|++.|+.+.+|..   +..+...+..+-..---+++++.++
T Consensus         2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~---~~~~~k~~~~a~~~g~~~~iiig~~   64 (94)
T cd00738           2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR---ERKIGKKFREADLRGVPFAVVVGED   64 (94)
T ss_pred             eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC---CcCHhHHHHHHHhCCCCEEEEECCC
Confidence            57776654330  1245777889999999999988653   3455556655544333566777764

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=81.68  E-value=3.4  Score=26.03  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             ccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecC
Q 044488           39 DNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE   88 (125)
Q Consensus        39 ~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~   88 (125)
                      ..++.+|...|++.|+++.+|.   .+..+...+.+|-..---+++++.+
T Consensus        15 ~~~a~~l~~~L~~~gi~v~~d~---~~~~~~k~~~~a~~~g~p~~iiiG~   61 (94)
T PF03129_consen   15 IEYAQELANKLRKAGIRVELDD---SDKSLGKQIKYADKLGIPFIIIIGE   61 (94)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEES---SSSTHHHHHHHHHHTTESEEEEEEH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEC---CCCchhHHHHHHhhcCCeEEEEECc
Confidence            4678999999999999999986   3444555566655433334444443

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain

Probab=80.65  E-value=9.7  Score=25.44  Aligned_cols=76  Identities=11%  Similarity=-0.023  Sum_probs=47.7

Q ss_pred             cceeeecccCC-CCCCCCeeeEEEeceec-cCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEE
Q 044488            8 YDVSVMASSSP-SPRNSNKHGIFLSFRGE-DTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIII   85 (125)
Q Consensus         8 ~~~~~~~~s~~-~~~~~~~yDVFISys~~-D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~Ivv   85 (125)
                      -|++-|.---+ ...+   +||||-.-++ +.....+..|...|+..|++|-+|..    ..+..++..|-..---++++
T Consensus        11 ~~~~~~~~~~P~~lap---~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~ii   83 (121)
T cd00858          11 GDEGRIVLRLPPALAP---IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVT   83 (121)
T ss_pred             CCCccEEEEcCCCcCC---cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEE
Confidence            34555655533 3444   7888877551 12235677899999999999998742    45666666664444445666


Q ss_pred             ecCCc
Q 044488           86 FSERY   90 (125)
Q Consensus        86 lS~~~   90 (125)
                      +.++-
T Consensus        84 iG~~e   88 (121)
T cd00858          84 VDFDT   88 (121)
T ss_pred             ECcCc
Confidence            66553

GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		2e-20
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		9e-18

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 19  SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIE 77
           S   + K+ +FLSFRG DTR NF S LY  L   +I TF D+ +L+ G   S  L   IE
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 78  ASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
            S  ++++ SE YA+S WCLDEL+ I++ +      V+P+F  V+P+H
Sbjct: 62  VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNH 109

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 23  SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTI 81
           S ++ +FLSFRG DTR+ FT  LY +L    I TF D+D L +G EI  +LL  I+ S I
Sbjct: 33  SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKI 92
Query: 82  SIIIFSERYASSGWCLDELLKILECK-HDYGQIVIPVFCRVDPS 124
            + I S  YA S WCL EL +I+  +  D  +I++P+F  VDPS
Sbjct: 93  YVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPS 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	2e-61
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	4e-59
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	3e-56
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	5e-13
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  184 bits (470), Expect = 2e-61
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 6/114 (5%)

Query: 13  MASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQS 71
           M+S + +     K+ +FLSFRG DTR NF S LY  L   +I TF D+  L+ G   S  
Sbjct: 1   MSSHTAT-----KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 72  LLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
           L   IE S  ++++ SE YA+S WCLDEL+ I++ +      V+P+F  V+P+H
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNH 109

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  180 bits (458), Expect = 4e-59
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 5/130 (3%)

Query: 1   MNPRNNEYDVSVMASSSPSPRNSN---KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETF 57
           +N  ++        S S +P  S    ++ +FLSFRG DTR+ FT  LY +L    I TF
Sbjct: 8   VNDDDDSTSEVDAISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTF 67

Query: 58  IDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYG-QIVI 115
            D+D L +G EI  +LL  I+ S I + I S  YA S WCL EL +I+  + +   +I++
Sbjct: 68  RDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIIL 127

Query: 116 PVFCRVDPSH 125
           P+F  VDPS 
Sbjct: 128 PIFYMVDPSD 137

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  171 bits (435), Expect = 3e-56
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 14  ASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSL 72
            +++    ++  H IF+S   ED + +F   L   L     E + D+  L+ GD + +S+
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 73  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
              + +S   I++ S  +    W   EL  + + +      ++P++ +V    
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDE 120

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 60.5 bits (147), Expect = 5e-13
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 18  PSPRNSNKHGIFLSFRGEDTRDNFTSHLYSAL--CHNNIETFIDN-DLKRGDEISQSLLD 74
            S R S  + + +    ED        L S L     ++  F+   D   G  I   L  
Sbjct: 3   GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 75  TIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPS 124
            + +S   +++ +  +    WC  ++L+ L          IP+   +  +
Sbjct: 61  ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRA 110

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 29  FLSFRGEDTRDNFTSHLYSAL--CHNNIETFI-DNDLKRGDEISQSLLDTIEASTISIII 85
           F+S+   D      + L   L     +I   + ++    G  IS++++  IE S  SI +
Sbjct: 39  FISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFV 97

Query: 86  FSERYASSGWCLDELLKIL-ECKHDYGQIVIPVFCRVDPSH 125
            S  +  + WC  E         H+    +I +     P +
Sbjct: 98  LSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFY 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.98
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.95
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.48
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.23
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	95.88
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	93.05
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	91.15
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	90.42
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	88.46

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1e-37  Score=230.23  Aligned_cols=109  Identities=43%  Similarity=0.720  Sum_probs=97.6

Q ss_pred             CCCCCCCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchh
Q 044488           17 SPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW   95 (125)
Q Consensus        17 ~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~w   95 (125)
                      ++++.++++|||||||+++|+++.|+.+|+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||++|+.|.|
T Consensus        27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W  106 (204)
T 3ozi_A           27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW  106 (204)
T ss_dssp             -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred             CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence            335677899999999999999889999999999999999999987 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhh-CCCEEEEEEeecCCCC
Q 044488           96 CLDELLKILECKHD-YGQIVIPVFCRVDPSH  125 (125)
Q Consensus        96 c~~El~~~~~~~~~-~~~~IiPI~~~v~ps~  125 (125)
                      |++||..|+++.++ .+++||||||+|+|++
T Consensus       107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~  137 (204)
T 3ozi_A          107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSD  137 (204)
T ss_dssp             HHHHHHHHHHHHHHCTTSEECCEEESSCHHH
T ss_pred             HHHHHHHHHHHHHhcCCeeeEEEEeecCHHH
Confidence            99999999998865 5789999999999974

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1e-37  Score=226.17  Aligned_cols=106  Identities=42%  Similarity=0.794  Sum_probs=85.7

Q ss_pred             CCCCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhHH
Q 044488           20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLD   98 (125)
Q Consensus        20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~   98 (125)
                      ++++++|||||||+++|+++.|+.+|+++|+++|+++|+|++ +.+|+.|.++|.+||++|+++|+|||++|++|.||++
T Consensus         3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~   82 (176)
T 3jrn_A            3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD   82 (176)
T ss_dssp             ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred             CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence            345688999999999999889999999999999999999977 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhCCCEEEEEEeecCCCC
Q 044488           99 ELLKILECKHDYGQIVIPVFCRVDPSH  125 (125)
Q Consensus        99 El~~~~~~~~~~~~~IiPI~~~v~ps~  125 (125)
                      ||..++++.++.+++||||||+|+|+|
T Consensus        83 EL~~i~~~~~~~~~~ViPIfy~V~ps~  109 (176)
T 3jrn_A           83 ELVTIMDFEKKGSITVMPIFYGVEPNH  109 (176)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECSSCHHH
T ss_pred             HHHHHHhhhccCCCEEEEEEecCCHHH
Confidence            999999998888999999999999974

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.98  E-value=1e-33  Score=200.39  Aligned_cols=105  Identities=22%  Similarity=0.411  Sum_probs=96.4

Q ss_pred             CCCCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhHH
Q 044488           20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLD   98 (125)
Q Consensus        20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~   98 (125)
                      ..+.++|||||||+++| +..|+.+|..+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            35678999999999999 457999999999999999999997 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhCCCEEEEEEeecCCCC
Q 044488           99 ELLKILECKHDYGQIVIPVFCRVDPSH  125 (125)
Q Consensus        99 El~~~~~~~~~~~~~IiPI~~~v~ps~  125 (125)
                      ||..++++.++++.+||||||+++|++
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~  120 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDE  120 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGG
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHH
Confidence            999999877777789999999999974

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.95  E-value=4e-29  Score=176.05  Aligned_cols=102  Identities=18%  Similarity=0.304  Sum_probs=77.4

Q ss_pred             CCCCCeeeEEEeceeccCcccHHHHHHHHHcc--CCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhh
Q 044488           20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWC   96 (125)
Q Consensus        20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~--~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc   96 (125)
                      ...++.|||||||+++|+  .||.+|..+|++  .|+++|++++ +.+|+.+.++|.++|++|+.+|+|+|++|++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            556789999999999996  589999999998  5999999887 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhCCCEEEEEEeecCC
Q 044488           97 LDELLKILECKHDYGQIVIPVFCRVDP  123 (125)
Q Consensus        97 ~~El~~~~~~~~~~~~~IiPI~~~v~p  123 (125)
                      +.|+..++.+......+||||++++++
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~  109 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSR  109 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCG
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCCh
Confidence            999999998763333478899988764

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=1.4e-27  Score=168.41  Aligned_cols=100  Identities=17%  Similarity=0.279  Sum_probs=89.0

Q ss_pred             CCCeeeEEEeceeccCcccHHHH-HHHHHccC--CeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhH
Q 044488           22 NSNKHGIFLSFRGEDTRDNFTSH-LYSALCHN--NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCL   97 (125)
Q Consensus        22 ~~~~yDVFISys~~D~~~~fv~~-L~~~L~~~--Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~   97 (125)
                      .++.|||||||+++|.  .||.+ |..+|++.  |+++|+|++ +.+|+.+.++|.++|++|+.+|+|+|++|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4678999999999996  69986 99999986  999999987 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhhCCCEEEEEEee-cCC
Q 044488           98 DELLKILEC-KHDYGQIVIPVFCR-VDP  123 (125)
Q Consensus        98 ~El~~~~~~-~~~~~~~IiPI~~~-v~p  123 (125)
                      .|+..++.. .++++.+||||+|+ +++
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~  107 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEK  107 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence            999998853 34566789999995 443

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=4.6e-27  Score=167.64  Aligned_cols=101  Identities=14%  Similarity=0.206  Sum_probs=89.2

Q ss_pred             CCCCCeeeEEEeceeccCcccHHHHHHHHHccC--CeeeEEeCC-CCCCccchHHHHHHHH-hcceEEEEecCCccCchh
Q 044488           20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND-LKRGDEISQSLLDTIE-ASTISIIIFSERYASSGW   95 (125)
Q Consensus        20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~-~~~G~~~~~~i~~aI~-~s~~~IvvlS~~~~~S~w   95 (125)
                      ...++.|||||||+++|.  .||.+|..+|++.  |+++|++++ +.+|+.+.++|.++|+ +|+.+|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            444678999999999994  7999999999984  699999887 9999999999999999 799999999999999999


Q ss_pred             hHHHHHHHHHhh-hhCCCEEEEEEeecC
Q 044488           96 CLDELLKILECK-HDYGQIVIPVFCRVD  122 (125)
Q Consensus        96 c~~El~~~~~~~-~~~~~~IiPI~~~v~  122 (125)
                      |+.|+..++.+. ++++.+||||+|+.-
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~  116 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAM  116 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence            999999999864 334568999999643

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.3e-26  Score=163.87  Aligned_cols=97  Identities=22%  Similarity=0.337  Sum_probs=86.4

Q ss_pred             CeeeEEEeceeccC---------cccHHHHHHH-HHc-cCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCcc
Q 044488           24 NKHGIFLSFRGEDT---------RDNFTSHLYS-ALC-HNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYA   91 (125)
Q Consensus        24 ~~yDVFISys~~D~---------~~~fv~~L~~-~L~-~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~   91 (125)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|++++ +.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999996         2568888665 699 79999999887 999999999999999999999999999997


Q ss_pred             -CchhhHHHHHHHHHhh-hhCCCEEEEEEee
Q 044488           92 -SSGWCLDELLKILECK-HDYGQIVIPVFCR  120 (125)
Q Consensus        92 -~S~wc~~El~~~~~~~-~~~~~~IiPI~~~  120 (125)
                       .|.||+.|+..++.+. ++++.+||||+++
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~  111 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECS  111 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence             9999999999999865 5567899999985

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=1.1e-26  Score=168.34  Aligned_cols=99  Identities=20%  Similarity=0.372  Sum_probs=85.5

Q ss_pred             CCCCCeeeEEEeceeccCcccHHHH-HHHHHcc--CCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchh
Q 044488           20 PRNSNKHGIFLSFRGEDTRDNFTSH-LYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW   95 (125)
Q Consensus        20 ~~~~~~yDVFISys~~D~~~~fv~~-L~~~L~~--~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~w   95 (125)
                      ...++.|||||||+++|+  .||.+ |...|++  +|+++|++++ +.+|+.+.++|.++|++|+.+|+|+|++|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999995  79975 9999998  8999999887 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhh-hhCCCEEEEEEee
Q 044488           96 CLDELLKILECK-HDYGQIVIPVFCR  120 (125)
Q Consensus        96 c~~El~~~~~~~-~~~~~~IiPI~~~  120 (125)
                      |+.|+..++.+. ++++.+||||+|+
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~  133 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLE  133 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESS
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEec
Confidence            999999998644 4456789999995

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=160.53  Aligned_cols=100  Identities=19%  Similarity=0.306  Sum_probs=89.2

Q ss_pred             CCCCeeeEEEeceeccCcccHH-HHHHHHHcc-----CCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCc
Q 044488           21 RNSNKHGIFLSFRGEDTRDNFT-SHLYSALCH-----NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASS   93 (125)
Q Consensus        21 ~~~~~yDVFISys~~D~~~~fv-~~L~~~L~~-----~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S   93 (125)
                      ...+.|||||||+++|.  .|| .+|...||.     .|+++|++++ +.||+.+.++|.++|++||.+|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35689999999999995  577 679999985     5899999988 99999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhh-hhCCCEEEEEEeecC
Q 044488           94 GWCLDELLKILECK-HDYGQIVIPVFCRVD  122 (125)
Q Consensus        94 ~wc~~El~~~~~~~-~~~~~~IiPI~~~v~  122 (125)
                      .||..|+..|+.+. ++++++||||+|+--
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~  773 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSL  773 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence            99999999998765 456789999999643

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.48  E-value=1.2e-07  Score=63.52  Aligned_cols=72  Identities=11%  Similarity=0.026  Sum_probs=53.8

Q ss_pred             CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHH
Q 044488           24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKI  103 (125)
Q Consensus        24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~  103 (125)
                      ++|.+||||+..| .   ...|...|.+.|+.. .|              +.|+.|+++|++.++....|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            5799999999987 2   344555554445432 22              678999999999999999999999999877


Q ss_pred             HHhhhhCCCEEEEEE
Q 044488          104 LECKHDYGQIVIPVF  118 (125)
Q Consensus       104 ~~~~~~~~~~IiPI~  118 (125)
                      .+    .+.+||-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            54    455777665

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.23  E-value=0.0011  Score=47.83  Aligned_cols=78  Identities=18%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             cHHHHHHHHHccCCeeeEEeCC-C----CC----CccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhhhhC
Q 044488           40 NFTSHLYSALCHNNIETFIDND-L----KR----GDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDY  110 (125)
Q Consensus        40 ~fv~~L~~~L~~~Gi~vf~d~~-~----~~----G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~  110 (125)
                      .+.+.|+.--.....--|.|.. .    ..    -+.|...+.+.|..|+.+|+++|++...|.|...|+..+++   +.
T Consensus        32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~  108 (189)
T 3hyn_A           32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TK  108 (189)
T ss_dssp             HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TT
T ss_pred             HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hc
Confidence            4555666655444444455642 2    22    24577899999999999999999999999999999999873   23


Q ss_pred             CCEEEEEEee
Q 044488          111 GQIVIPVFCR  120 (125)
Q Consensus       111 ~~~IiPI~~~  120 (125)
                      +.+||-|..+
T Consensus       109 ~~PII~Vy~~  118 (189)
T 3hyn_A          109 GLPVIVIYPD  118 (189)
T ss_dssp             CCCEEEEETT
T ss_pred             CCcEEEEECC
Confidence            5578877644

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=95.88  E-value=0.049  Score=38.11  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=54.2

Q ss_pred             ccHHHHHHHHHccCCeeeEEeCC--CCCCccchHHHHHHHHhcceEEEEecC--CccCchhhHHHHHHHHHhhhhCCCEE
Q 044488           39 DNFTSHLYSALCHNNIETFIDND--LKRGDEISQSLLDTIEASTISIIIFSE--RYASSGWCLDELLKILECKHDYGQIV  114 (125)
Q Consensus        39 ~~fv~~L~~~L~~~Gi~vf~d~~--~~~G~~~~~~i~~aI~~s~~~IvvlS~--~~~~S~wc~~El~~~~~~~~~~~~~I  114 (125)
                      ..+...+.+.|+.+|+.+|...+  ......+.+.=.++|++|+++|++++|  .-..++-+..|+..+....    ++|
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg----KPV  101 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN----KMV  101 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT----CEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC----CEE
Confidence            47889999999999999987543  222233334447899999999999996  4445666889999987643    366


Q ss_pred             EEE
Q 044488          115 IPV  117 (125)
Q Consensus       115 iPI  117 (125)
                      |-+
T Consensus       102 i~l  104 (161)
T 2f62_A          102 LTF  104 (161)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=93.05  E-value=0.7  Score=31.96  Aligned_cols=86  Identities=12%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             CeeeEEEeceec-cCccc-HHHHHHHHHccCCeeeEEeCCCCC-----Cc-------cchHHHHHHHHhcceEEEEecCC
Q 044488           24 NKHGIFLSFRGE-DTRDN-FTSHLYSALCHNNIETFIDNDLKR-----GD-------EISQSLLDTIEASTISIIIFSER   89 (125)
Q Consensus        24 ~~yDVFISys~~-D~~~~-fv~~L~~~L~~~Gi~vf~d~~~~~-----G~-------~~~~~i~~aI~~s~~~IvvlS~~   89 (125)
                      ++..|||+=.-. +.... ....+.+.|+..| .|+.+....+     |.       .+...-.+.|++|+++|++++  
T Consensus        10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~--   86 (165)
T 2khz_A           10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT--   86 (165)
T ss_dssp             CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence            345799985322 21112 4588999999999 8765432211     21       122333478999999999997  


Q ss_pred             ccCchhhHHHHHHHHHhhhhCCCEEEEE
Q 044488           90 YASSGWCLDELLKILECKHDYGQIVIPV  117 (125)
Q Consensus        90 ~~~S~wc~~El~~~~~~~~~~~~~IiPI  117 (125)
                       ..+.-+..|+..+...    +.+||-+
T Consensus        87 -~~d~Gt~~EiGyA~al----gKPVi~l  109 (165)
T 2khz_A           87 -QPSLGVGYELGRAVAL----GKPILCL  109 (165)
T ss_dssp             -SCCHHHHHHHHHHHHT----CSSEEEE
T ss_pred             -CCCCCHHHHHHHHHHC----CCEEEEE
Confidence             5677889999998764    3355543

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=91.15  E-value=1.4  Score=30.65  Aligned_cols=75  Identities=12%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             ccHHHHHHHHHccC--CeeeEEeCC-C----CCCccch----HHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhh
Q 044488           39 DNFTSHLYSALCHN--NIETFIDND-L----KRGDEIS----QSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK  107 (125)
Q Consensus        39 ~~fv~~L~~~L~~~--Gi~vf~d~~-~----~~G~~~~----~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~  107 (125)
                      ..+..++.++|+.+  |+.+|...+ -    .++..+.    +.=.++|++|+++|.++. ....+..+..|+..+... 
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~-   96 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK-   96 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC-
Confidence            35778899999865  899987543 1    1223333    334457999999999995 445678899999998864 


Q ss_pred             hhCCCEEEEEE
Q 044488          108 HDYGQIVIPVF  118 (125)
Q Consensus       108 ~~~~~~IiPI~  118 (125)
                         +.+|+.+.
T Consensus        97 ---gkPVi~~~  104 (162)
T 3ehd_A           97 ---GIPVVALY  104 (162)
T ss_dssp             ---TCCEEEEC
T ss_pred             ---CCEEEEEE
Confidence               34666553

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=90.42  E-value=1.5  Score=30.27  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=48.3

Q ss_pred             ccHHHHHHHHHccCCeeeEE---eCC-C-CCCc-------cchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHh
Q 044488           39 DNFTSHLYSALCHNNIETFI---DND-L-KRGD-------EISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILEC  106 (125)
Q Consensus        39 ~~fv~~L~~~L~~~Gi~vf~---d~~-~-~~G~-------~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~  106 (125)
                      ..+...+.+.|++.| .|+-   ... + ..|+       .+.+.-.++|++|+++|++++   ..+.-...|+..+...
T Consensus        18 ~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~al   93 (152)
T 4fyk_A           18 QALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVAL   93 (152)
T ss_dssp             HHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHc
Confidence            357789999999999 6753   111 1 1122       244555678999999999998   6677888999998864


Q ss_pred             hhhCCCEEEEEE
Q 044488          107 KHDYGQIVIPVF  118 (125)
Q Consensus       107 ~~~~~~~IiPI~  118 (125)
                      .    .+|+-++
T Consensus        94 g----kPV~~l~  101 (152)
T 4fyk_A           94 G----KPILCLF  101 (152)
T ss_dssp             T----CCEEEEE
T ss_pred             C----CeEEEEE
Confidence            3    3555443

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=88.46  E-value=2.9  Score=29.10  Aligned_cols=74  Identities=18%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             ccHHHHHHHHHccC--CeeeEEeCC--C--------CCC--------ccchHHHHHHHHhcceEEEEecCCccCchhhHH
Q 044488           39 DNFTSHLYSALCHN--NIETFIDND--L--------KRG--------DEISQSLLDTIEASTISIIIFSERYASSGWCLD   98 (125)
Q Consensus        39 ~~fv~~L~~~L~~~--Gi~vf~d~~--~--------~~G--------~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~   98 (125)
                      ..+..++.+.|+.+  |+.+|...+  .        ..+        ..+.+.=.++|++|+++|+++...- .+.-+..
T Consensus        22 ~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~~-~D~GTa~  100 (167)
T 1s2d_A           22 RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQ-LDDGSAF  100 (167)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESSS-CCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCCC-CCCCcee
Confidence            46788999999999  888886433  2        111        1223344568999999999998644 4567788


Q ss_pred             HHHHHHHhhhhCCCEEEEE
Q 044488           99 ELLKILECKHDYGQIVIPV  117 (125)
Q Consensus        99 El~~~~~~~~~~~~~IiPI  117 (125)
                      |+..+...    +.+|+-+
T Consensus       101 EiGyA~al----gKPVv~l  115 (167)
T 1s2d_A          101 XIGFMRAM----HKPVILV  115 (167)
T ss_dssp             HHHHHHHT----TCCEEEE
T ss_pred             ehhhHhhC----CCeEEEE
Confidence            99998764    3356554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-16
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-14

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 3e-16
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 25  KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFI-DNDLKRGDEISQSLLDTIEASTISI 83
           +   F+S+ G D+     + L   L    ++  + + +   G  I ++++  IE S  SI
Sbjct: 12  QFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 84  IIFSERYASSGWCLDELLKILECKHDYGQIV-IPVFCRVDPSH 125
            + S  +  S WC  EL          G    I +     P +
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQY 113

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 2e-14
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 28  IFLSFRGEDT---RDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 84
            F+S+   D     +     L +      +      D   G  I  +++D+IE S  ++ 
Sbjct: 8   AFVSYSERDAYWVENLMVQELENFNPPFKL-CLHKRDFIHGKWIIDNIIDSIEKSHKTVF 66

Query: 85  IFSERYASSGWCLDEL-LKILECKHDYGQIVIPVFCRVDPSH 125
           + SE +  S WC  EL         +     I +        
Sbjct: 67  VLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKK 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.92
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.91
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	96.02
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	94.52
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	88.75
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	87.81
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	82.37
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.16
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	81.09

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.2e-26  Score=161.25  Aligned_cols=99  Identities=21%  Similarity=0.394  Sum_probs=89.2

Q ss_pred             CCCCCeeeEEEeceeccCcccHH-HHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhH
Q 044488           20 PRNSNKHGIFLSFRGEDTRDNFT-SHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCL   97 (125)
Q Consensus        20 ~~~~~~yDVFISys~~D~~~~fv-~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~   97 (125)
                      ..++++|||||||+++|.  .|| ..|...|+.+|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|+||.
T Consensus         7 ~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~   84 (161)
T d1fyva_           7 LQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH   84 (161)
T ss_dssp             SSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred             cCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence            446789999999999984  577 5699999999999999988 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhCCCEEEEEEee
Q 044488           98 DELLKILECK-HDYGQIVIPVFCR  120 (125)
Q Consensus        98 ~El~~~~~~~-~~~~~~IiPI~~~  120 (125)
                      .|+..++.+. +++..++|||+++
T Consensus        85 ~E~~~a~~~~~~~~~~~lIpV~l~  108 (161)
T d1fyva_          85 YELYFAHHNLFHEGSNSLILILLE  108 (161)
T ss_dssp             HHHHTTSCCCSCSSCSSEEEEESS
T ss_pred             HHHHHHHHHHHHcCCCceeEEEEe
Confidence            9999998754 3456789999996

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.2e-26  Score=157.87  Aligned_cols=98  Identities=18%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             CCCCeeeEEEeceeccCcccHH-HHHHHHHcc--CCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhh
Q 044488           21 RNSNKHGIFLSFRGEDTRDNFT-SHLYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWC   96 (125)
Q Consensus        21 ~~~~~yDVFISys~~D~~~~fv-~~L~~~L~~--~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc   96 (125)
                      ++++.|||||||+++|.  .|| +.|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|+||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            46789999999999994  566 468999986  4899999987 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhCCCEEEEEEee
Q 044488           97 LDELLKILECK-HDYGQIVIPVFCR  120 (125)
Q Consensus        97 ~~El~~~~~~~-~~~~~~IiPI~~~  120 (125)
                      ..|+..++... ++++.+||||+++
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~  103 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLE  103 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESS
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEec
Confidence            99999877543 4567799999996

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.02  E-value=0.015  Score=38.68  Aligned_cols=73  Identities=15%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             cCcccHHHHHHHHHccCCeeeEEeCC--CCCCccchHHHHHHHHhcceEEEEecC--CccCchhhHHHHHHHHHhhh
Q 044488           36 DTRDNFTSHLYSALCHNNIETFIDND--LKRGDEISQSLLDTIEASTISIIIFSE--RYASSGWCLDELLKILECKH  108 (125)
Q Consensus        36 D~~~~fv~~L~~~L~~~Gi~vf~d~~--~~~G~~~~~~i~~aI~~s~~~IvvlS~--~~~~S~wc~~El~~~~~~~~  108 (125)
                      |....+...+.+.|+.+|+.++...+  ......+...-.++|++|+++|+++++  .-..+.=+..|+..+....+
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            33346888999999999999987544  333344556667799999999999985  33456678899999887543

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.52  E-value=0.053  Score=32.75  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=44.3

Q ss_pred             CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecC
Q 044488           24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE   88 (125)
Q Consensus        24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~   88 (125)
                      ...+|||..-++.. ..++..|...|+..|+++-+|.   .+..+..++..|-..---+++++.+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEecCC
Confidence            46799999877765 4788999999999999999875   3456666777765544444555544

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=88.75  E-value=1.9  Score=28.09  Aligned_cols=89  Identities=18%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             eeeEEEeceec-cCcccHHHHHHHHHccCC--eeeEEeCC--C--------CCC----cc----chHHHHHHHHhcceEE
Q 044488           25 KHGIFLSFRGE-DTRDNFTSHLYSALCHNN--IETFIDND--L--------KRG----DE----ISQSLLDTIEASTISI   83 (125)
Q Consensus        25 ~yDVFISys~~-D~~~~fv~~L~~~L~~~G--i~vf~d~~--~--------~~G----~~----~~~~i~~aI~~s~~~I   83 (125)
                      +..|||.=.-- +....++..+.+.|+++|  +.+|...+  .        +.+    ..    +...=.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            45566653211 223468889999999988  67774221  1        001    11    2223345899999999


Q ss_pred             EEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEE
Q 044488           84 IIFSERYASSGWCLDELLKILECKHDYGQIVIPVF  118 (125)
Q Consensus        84 vvlS~~~~~S~wc~~El~~~~~~~~~~~~~IiPI~  118 (125)
                      +++..... +.-+..|+..+....    .+||-+.
T Consensus        87 A~ldg~~~-D~GTa~EiG~A~a~g----KPvi~~~  116 (167)
T d1s2da_          87 FLYDMDQL-DDGSAFEIGFMRAMH----KPVILVP  116 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHHTT----CCEEEEE
T ss_pred             EEeCCCCC-CccHHHHHHHHHHCC----CeEEEEe
Confidence            99987664 445778999988754    3666554

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.81  E-value=0.36  Score=28.53  Aligned_cols=60  Identities=18%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             eeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecC
Q 044488           25 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE   88 (125)
Q Consensus        25 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~   88 (125)
                      ..||||.--+.+. ...+..|...|+..|+++-+|.   .+..+..++..|=..---+++|+.+
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG~   63 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDY---LQRKIKGQMKQADRLGAKFTIVIGD   63 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECC---SCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecC---CCCCHHHHHHHHHhcCCCEEEEEcc
Confidence            4789997655443 4688899999999999998874   3445666777765544445555543

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.37  E-value=1.9  Score=25.91  Aligned_cols=61  Identities=8%  Similarity=0.153  Sum_probs=38.9

Q ss_pred             eeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCc
Q 044488           26 HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERY   90 (125)
Q Consensus        26 yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~   90 (125)
                      ++|.|--=+.+ ...++..|...|+..|+++.+|.+   +..+...+.+|-..---+++|+.++-
T Consensus         8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~~ki~~a~~~g~p~~iiiG~~E   68 (110)
T d1qf6a1           8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGDKE   68 (110)
T ss_dssp             SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECTTT
T ss_pred             ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccCC---ccchhHHHHHHHHcCCCEEEEECchH
Confidence            55666432222 246899999999999999999864   33455566665444344555555553

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.16  E-value=0.83  Score=27.05  Aligned_cols=59  Identities=14%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             eeeEEEeceeccCcccHHHHHHHHHccC--CeeeEEeCCCCCCccchHHHHHHHHhcceEEEEec
Q 044488           25 KHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDNDLKRGDEISQSLLDTIEASTISIIIFS   87 (125)
Q Consensus        25 ~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS   87 (125)
                      ..||||-.-+++. ...+..|...|+..  |+++-+|.   .+..+..++..|-..---+++|+.
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~---~~~~l~kq~k~A~~~~~~~~iiiG   63 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNH---GGGNFKKQFARADKWGARVAVVLG   63 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECC---SCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeC---CCCCHHHHHHHHHHhCCChhhhcC
Confidence            4799998865543 46788899999876  99998874   344666677776554333444443

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=81.09  E-value=1.8  Score=28.05  Aligned_cols=75  Identities=16%  Similarity=0.083  Sum_probs=48.6

Q ss_pred             ccHHHHHHHHHccC----CeeeEEeCC-----CCCC--------cc----chHHHHHHHHhcceEEEEecCCccCchhhH
Q 044488           39 DNFTSHLYSALCHN----NIETFIDND-----LKRG--------DE----ISQSLLDTIEASTISIIIFSERYASSGWCL   97 (125)
Q Consensus        39 ~~fv~~L~~~L~~~----Gi~vf~d~~-----~~~G--------~~----~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~   97 (125)
                      ..+..++.++|++.    |..+|.-.+     ...+        ..    +...=.++|++|+++|+++..... +.-+.
T Consensus        17 ~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD~via~ldg~~~-D~Gta   95 (156)
T d1f8ya_          17 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDEE-DVGLG   95 (156)
T ss_dssp             HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGGC-CHHHH
T ss_pred             HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEEEEeCCCCC-CCCHH
Confidence            46788899999873    566665321     1111        11    222335689999999999986543 45677


Q ss_pred             HHHHHHHHhhhhCCCEEEEEE
Q 044488           98 DELLKILECKHDYGQIVIPVF  118 (125)
Q Consensus        98 ~El~~~~~~~~~~~~~IiPI~  118 (125)
                      .|+..+....+    +||-+.
T Consensus        96 ~EiG~A~a~gK----pvi~~~  112 (156)
T d1f8ya_          96 MELGYALSQGK----YVLLVI  112 (156)
T ss_dssp             HHHHHHHHTTC----EEEEEE
T ss_pred             HHHHHHHHcCC----cEEEEe
Confidence            89999887443    666554