Citrus Sinensis ID: 044501

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------
MDPPLPSINDPLSPPPSHDSDADIPGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHSQPRFDWDTHHF
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEcEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHcccccccccHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHccccccccccccccEEEEEEEEEEEEEcccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHcccccccHHHHccccccHHHcccccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHcccccHcccccccccEEEccccccccccccc
mdpplpsindplspppshdsdadipgawygNIQYLLNISVIGLCFCVFIFLFVKLrsdhrripgpAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPlnlygghavlndqfskTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTrfrdgngnlsdpnansTAIFTIMVQglpkslgvdKTIVEEYFQykypgkvykvimpmdlcaLDDLATELIRVRDEITWLVARIdsrllpddnendgnenqgFFCWVVYVWRKVKFLWGKvmdrlgftDEVRLRNLQELRAELETELAAYkegrapgagvAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQwkveraplatdiYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGrcyldgedcKKIEQYMSASFLSKSCLSTLAFLITSTFLGisfdllapipwIKKKIQKFRKNDmlqlvpeqseeyplenqntdslqqplisqsmfdsptmnAIEHQGqalseypisrpspipkqtfdFAQYYAFDLTIFALTLIYssfaplvvpvgaVYFGYRYVVDKYNFLFVYRvrgfpagndgrlMDTVLGIMRFCVDLFLLSMLLFFsvqgdstkLQAIFTLGLLVLYKllpsdhdsfhptllegiqtvdsivdgpidyevhsqprfdwdthhf
MDPPLPSINDPLSPPPSHDSDADIPGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNgnlsdpnanSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRllpddnendgnenQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELrlqrnqwkveraplatdiYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYevhsqprfdwdthhf
MDPPLPSINdplspppshdsdadipGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFvvllsvavasilvllPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHflfvvlvvflvHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPddnendgnenQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNlqelraeletelaaYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTClllmllffssplAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDlfllsmllffsVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHSQPRFDWDTHHF
***********************IPGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGN*******ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLL**********NQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDM***********************************************************QTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHS***********
****************************YGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNGNL*****NSTAIFTIMVQGLPKS**VDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLL**********************RF*******
MDPPLPSINDPLSPPPSHDSDADIPGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHSQPRFDWDTHHF
************SPPPSHDSDADIPGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHSQPRFDWDTHHF
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MDPPLPSINDPLSPPPSHDSDADIPGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRxxxxxxxxxxxxxxxxxxxxxRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHSQPRFDWDTHHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query807 2.2.26 [Sep-21-2011]
Q8CBX0802 Transmembrane protein 63C yes no 0.635 0.639 0.215 2e-21
Q3TWI9832 Transmembrane protein 63B no no 0.733 0.711 0.221 3e-20
Q5T3F8832 Transmembrane protein 63B yes no 0.731 0.709 0.220 3e-20
Q91YT8804 Transmembrane protein 63A no no 0.539 0.541 0.231 1e-16
O94886807 Transmembrane protein 63A no no 0.474 0.474 0.237 7e-15
Q5R826807 Transmembrane protein 63A yes no 0.486 0.486 0.236 1e-14
Q9P1W3806 Transmembrane protein 63C no no 0.530 0.531 0.211 3e-13
Q09766871 Uncharacterized membrane yes no 0.263 0.244 0.244 2e-07
>sp|Q8CBX0|TM63C_MOUSE Transmembrane protein 63C OS=Mus musculus GN=Tmem63c PE=2 SV=1 Back     alignment and function desciption
 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 137/636 (21%), Positives = 247/636 (38%), Gaps = 123/636 (19%)

Query: 81  REIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHI 140
           R++   CG DA  ++  +    + +L + + S+ ++LP+N  G     N  F +TTI ++
Sbjct: 117 RDLINKCGDDARIYITFQYHLIIFVLILCIPSLGIILPVNYIGTVLDWNSHFGRTTIVNV 176

Query: 141 EKGSGLLWIH--FLFVVLVVFLVHIGMHGV----EERLKVTRFRDGNGNLSDPNANSTAI 194
              S  LW+H  F F+  ++ L  +G H +    ++ L  TR                  
Sbjct: 177 STESKFLWLHSLFAFLYFLINLAFMGHHCLGFVPKKSLHFTR------------------ 218

Query: 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPG----KVYKVIMPMDLCALDDLATELIRVRDE 250
            T+M+  +P  +  D  I+ ++F   YPG    +V+      +L  LDD     +R R  
Sbjct: 219 -TLMITYVPTEIQ-DPEIISKHFHEAYPGCVVTRVHFCYDVRNLIDLDDQRRHAMRGRLY 276

Query: 251 ITWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNL 310
            T    +    ++     +  +      CW  +          K +D   +  E+     
Sbjct: 277 YTAKAKKTGKVMI---KTHPCSRLCFCKCWTCF----------KEVDAEQYYSELE---- 319

Query: 311 QELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELR 370
           ++L  E   EL   +  R     + FV F+D  T  +   D++     R  K  SV  + 
Sbjct: 320 EQLTDEFNAELNRVQLKRL---DLIFVTFQDARTVRRIYDDYKYIHCGRHPKQSSVTTI- 375

Query: 371 LQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSA 430
           ++   W+V  AP   DI W HL + + S   R + +NT L  +  F ++P  +IN +   
Sbjct: 376 VKNYHWRVAHAPHPKDIIWKHLSIRRFSWWTRFIAINTFLFFLFFFLTTPAIIINTID-- 433

Query: 431 GRIIN-AEAMDNAQSWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKF-ER 488
             I N    ++  QS             ++ QF P+V+++   + V   +L YLS F E 
Sbjct: 434 --IYNVTRPIEKLQS------------PIVTQFFPSVLLWA--FTVTMPLLVYLSAFLEA 477

Query: 489 YLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSA 548
           + T S +    + K   F +  +++L  +  +SL   +    R   D    +        
Sbjct: 478 HWTRSSQNLIIVHKCYIFLVFMVVILPSMGLTSLHVFL----RWLFDIYYLEHATIRFQC 533

Query: 549 SFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLEN 608
            FL  +    + ++IT+  LG   +L+          + F          E    +  +N
Sbjct: 534 VFLPDNGAFFINYVITAALLGTGMELMRLGSLCTYCTRLFLSKS------EPERVHIRKN 587

Query: 609 QNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIF 668
           Q TD                                          F F + YA+ L +F
Sbjct: 588 QATD------------------------------------------FQFGREYAWMLNVF 605

Query: 669 ALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVY 704
           ++ + YS   P++VP G +Y   +++ D+YN  + Y
Sbjct: 606 SVVMAYSITCPIIVPFGLLYLCMKHITDRYNMYYSY 641

Mus musculus (taxid: 10090)
>sp|Q3TWI9|TM63B_MOUSE Transmembrane protein 63B OS=Mus musculus GN=Tmem63b PE=1 SV=1 Back     alignment and function description
>sp|Q5T3F8|TM63B_HUMAN Transmembrane protein 63B OS=Homo sapiens GN=TMEM63B PE=1 SV=1 Back     alignment and function description
>sp|Q91YT8|TM63A_MOUSE Transmembrane protein 63A OS=Mus musculus GN=Tmem63a PE=2 SV=1 Back     alignment and function description
>sp|O94886|TM63A_HUMAN Transmembrane protein 63A OS=Homo sapiens GN=TMEM63A PE=2 SV=3 Back     alignment and function description
>sp|Q5R826|TM63A_PONAB Transmembrane protein 63A OS=Pongo abelii GN=TMEM63A PE=2 SV=1 Back     alignment and function description
>sp|Q9P1W3|TM63C_HUMAN Transmembrane protein 63C OS=Homo sapiens GN=TMEM63C PE=2 SV=1 Back     alignment and function description
>sp|Q09766|YA7D_SCHPO Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query807
255586864807 conserved hypothetical protein [Ricinus 0.967 0.967 0.826 0.0
297802340802 hypothetical protein ARALYDRAFT_491051 [ 0.988 0.995 0.766 0.0
15233369817 early-responsive to dehydration stress p 0.993 0.981 0.762 0.0
224133612798 predicted protein [Populus trichocarpa] 0.982 0.993 0.813 0.0
357517913887 Transmembrane protein 63C [Medicago trun 0.990 0.900 0.783 0.0
449519900809 PREDICTED: transmembrane protein 63B-lik 0.962 0.960 0.789 0.0
449434464809 PREDICTED: transmembrane protein 63B-lik 0.962 0.960 0.789 0.0
224096690812 predicted protein [Populus trichocarpa] 0.970 0.964 0.811 0.0
356502089733 PREDICTED: transmembrane protein 63B-lik 0.874 0.963 0.701 0.0
218192047792 hypothetical protein OsI_09924 [Oryza sa 0.973 0.992 0.653 0.0
>gi|255586864|ref|XP_002534042.1| conserved hypothetical protein [Ricinus communis] gi|223525949|gb|EEF28346.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1294 bits (3349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/783 (82%), Positives = 723/783 (92%), Gaps = 2/783 (0%)

Query: 26  GAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIAR 85
            +WYGNIQYLLNIS IGL FC+FIF+FVKLRSDHRRIPGP+AL++KLLAVWHAT REIAR
Sbjct: 24  NSWYGNIQYLLNISTIGLLFCIFIFIFVKLRSDHRRIPGPSALISKLLAVWHATGREIAR 83

Query: 86  HCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLNDQFSKTTINHIEKGSG 145
           HCGADAAQFL+IEGGSF VLL +AV SI  +LPLNLY G AVL+DQFSKTTINHIEKGS 
Sbjct: 84  HCGADAAQFLIIEGGSFAVLLGIAVLSICFVLPLNLYAGTAVLDDQFSKTTINHIEKGSA 143

Query: 146 LLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKS 205
            LW+HF+FVV+VV LVH GM  +EERLK+TRFRDGNGNLSDPNA+STAIFTI+VQGLPKS
Sbjct: 144 FLWVHFVFVVIVVVLVHFGMSVIEERLKITRFRDGNGNLSDPNADSTAIFTIIVQGLPKS 203

Query: 206 LGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPD 265
           LG D++++ EYFQ++YPGKV+KVI+PMDLC LDDLATEL+R+RDEITWLVAR+DSRLLP+
Sbjct: 204 LGDDRSVLREYFQHRYPGKVFKVIVPMDLCTLDDLATELVRIRDEITWLVARMDSRLLPE 263

Query: 266 DNENDGNEN--QGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAA 323
           +N+    E+  +     +VY+W++VK+LW ++MDRLG+TDE +LR LQE+RAELET+LAA
Sbjct: 264 ENDEIVGESFVERLRGLMVYLWKRVKYLWDQMMDRLGYTDEEKLRKLQEVRAELETDLAA 323

Query: 324 YKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383
           YKEG AP AGVAFV+FKDVYTANKAVQDFRNE+KRRFGKFFS+MELRLQRNQWKVERAPL
Sbjct: 324 YKEGLAPSAGVAFVIFKDVYTANKAVQDFRNERKRRFGKFFSIMELRLQRNQWKVERAPL 383

Query: 384 ATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQ 443
           ATDIYWNHLG TKLSLRLRR+ VNTCLLLMLLFFSSPLAVI+A++SAGRII+AEAMDNAQ
Sbjct: 384 ATDIYWNHLGSTKLSLRLRRLFVNTCLLLMLLFFSSPLAVISALTSAGRIISAEAMDNAQ 443

Query: 444 SWLAWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKM 503
           SWLAWVQSSSW ASLIFQFLPNVI+FVSMYIV+PS LSYLSKFER+LTMSGE RAALLKM
Sbjct: 444 SWLAWVQSSSWFASLIFQFLPNVIIFVSMYIVVPSALSYLSKFERHLTMSGEHRAALLKM 503

Query: 504 VCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLI 563
           VCFFLVNLILLR LVESSLESAIL+MGRCYLDGEDCKKIEQYMSASFLS+SCLS+LAFLI
Sbjct: 504 VCFFLVNLILLRALVESSLESAILKMGRCYLDGEDCKKIEQYMSASFLSRSCLSSLAFLI 563

Query: 564 TSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSM 623
           TSTFLGISFDLLAP+PWIKKKIQKFRKNDMLQLVPEQSE+YPLENQ  ++LQ+PL+  S+
Sbjct: 564 TSTFLGISFDLLAPMPWIKKKIQKFRKNDMLQLVPEQSEDYPLENQTIENLQRPLMHDSL 623

Query: 624 FDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVP 683
           FDSP  N  + +GQ LSEYPISR SPIPKQ FDFAQYYAF+LTIFALTLIYSSFAPLVVP
Sbjct: 624 FDSPRTNGFQPEGQDLSEYPISRTSPIPKQKFDFAQYYAFNLTIFALTLIYSSFAPLVVP 683

Query: 684 VGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQ 743
           VGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVL IMRFCVDLFLLSMLLFFSVQ
Sbjct: 684 VGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLCIMRFCVDLFLLSMLLFFSVQ 743

Query: 744 GDSTKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHSQPRFDWD 803
           GDSTKLQAIFTLGLLV+YKLLPSD+D F P LLEG+QT+DSIVDGP DYE+ SQPRF+WD
Sbjct: 744 GDSTKLQAIFTLGLLVMYKLLPSDNDGFLPALLEGVQTIDSIVDGPTDYEIFSQPRFEWD 803

Query: 804 THH 806
           T++
Sbjct: 804 TYN 806

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297802340|ref|XP_002869054.1| hypothetical protein ARALYDRAFT_491051 [Arabidopsis lyrata subsp. lyrata] gi|297314890|gb|EFH45313.1| hypothetical protein ARALYDRAFT_491051 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15233369|ref|NP_195312.1| early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gi|3805853|emb|CAA21473.1| putative protein [Arabidopsis thaliana] gi|7270539|emb|CAB81496.1| putative protein [Arabidopsis thaliana] gi|19699093|gb|AAL90913.1| AT4g35870/F4B14_140 [Arabidopsis thaliana] gi|332661183|gb|AEE86583.1| early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224133612|ref|XP_002327638.1| predicted protein [Populus trichocarpa] gi|222836723|gb|EEE75116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357517913|ref|XP_003629245.1| Transmembrane protein 63C [Medicago truncatula] gi|355523267|gb|AET03721.1| Transmembrane protein 63C [Medicago truncatula] Back     alignment and taxonomy information
>gi|449519900|ref|XP_004166972.1| PREDICTED: transmembrane protein 63B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434464|ref|XP_004135016.1| PREDICTED: transmembrane protein 63B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224096690|ref|XP_002310699.1| predicted protein [Populus trichocarpa] gi|222853602|gb|EEE91149.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356502089|ref|XP_003519854.1| PREDICTED: transmembrane protein 63B-like [Glycine max] Back     alignment and taxonomy information
>gi|218192047|gb|EEC74474.1| hypothetical protein OsI_09924 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query807
TAIR|locus:2125394817 AT4G35870 "AT4G35870" [Arabido 0.964 0.952 0.711 6.8e-301
ZFIN|ZDB-GENE-030131-4320816 tmem63ba "transmembrane protei 0.281 0.278 0.238 7.9e-16
UNIPROTKB|F1MY22830 TMEM63B "Uncharacterized prote 0.280 0.272 0.243 7.6e-15
UNIPROTKB|H3BLW6761 TMEM63B "Transmembrane protein 0.232 0.247 0.239 1.2e-14
UNIPROTKB|F1RQV6830 TMEM63B "Uncharacterized prote 0.280 0.272 0.239 1.6e-14
UNIPROTKB|E2RBB2833 TMEM63B "Uncharacterized prote 0.280 0.271 0.239 1.6e-14
UNIPROTKB|Q5T3F8832 TMEM63B "Transmembrane protein 0.232 0.225 0.239 2e-14
MGI|MGI:2387609832 Tmem63b "transmembrane protein 0.280 0.271 0.239 2e-14
RGD|1310207802 Tmem63c "transmembrane protein 0.211 0.213 0.228 2.7e-14
UNIPROTKB|E1C7I8829 TMEM63B "Uncharacterized prote 0.280 0.272 0.235 3.1e-14
TAIR|locus:2125394 AT4G35870 "AT4G35870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2888 (1021.7 bits), Expect = 6.8e-301, P = 6.8e-301
 Identities = 556/781 (71%), Positives = 628/781 (80%)

Query:    27 AWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREIARH 86
             AWYGNIQYLLNISVIGL  CV IFLFVKLRSDHRR+PGP+AL +KLLAVW ATCREIARH
Sbjct:    37 AWYGNIQYLLNISVIGLLCCVSIFLFVKLRSDHRRMPGPSALFSKLLAVWKATCREIARH 96

Query:    87 CGADAAQFLLIEGGSFXXXXXXXXXXXXXXXPLNLYGGHAVLNDQFSKTTINHIEKGSGL 146
             CGADAAQFLLIEGGSF               PLNLY G A+L+D+ SKT I HI+KGS L
Sbjct:    97 CGADAAQFLLIEGGSFVLLFSIAVLAVSVMLPLNLYAGTALLSDELSKTMITHIQKGSAL 156

Query:   147 LWIHXXXXXXXXXXXHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKSL 206
             LW+H           H G+  +E RLK TRFRDGNGN+SDPNANSTA+FTIMVQGLPK+L
Sbjct:   157 LWLHFVFVVIVVVISHFGIAAIEARLKFTRFRDGNGNISDPNANSTAVFTIMVQGLPKNL 216

Query:   207 GVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLVARIDSRLLPXX 266
             G D+   E+ F+ KYPGKVYK I+PMDLCALDDLATEL+RVRDEITWLVA++DSRLLP  
Sbjct:   217 GSDRVEFEDCFRLKYPGKVYKFIVPMDLCALDDLATELVRVRDEITWLVAKMDSRLLPDE 276

Query:   267 XXXXXXXXQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNXXXXXXXXXXXXXXYKE 326
                        FC V  +W +VK LW ++ +R GFTD+ +LR               YKE
Sbjct:   277 YENVGDNGL-VFC-VCSLWVRVKVLWSQITERFGFTDDEKLRKLQELRADLESQLAAYKE 334

Query:   327 GRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATD 386
             GRA GAGVAFVMFKDVYTANKAVQDFRNE+ RR GKFFSV ELRLQRNQWKV+RAPLATD
Sbjct:   335 GRAQGAGVAFVMFKDVYTANKAVQDFRNERSRRTGKFFSVTELRLQRNQWKVDRAPLATD 394

Query:   387 IYWNHLGLTKLSLRLRRVLVNTCXXXXXXXXXXXXAVINAVSSAGRIINAEAMDNAQSWL 446
             IYWNHLGLTK++L +RRV+VNT             A+I+A+ SAGRI NAEA+D+AQ WL
Sbjct:   395 IYWNHLGLTKVALIVRRVIVNTILLLILVFFSSPLALISALVSAGRIFNAEALDSAQYWL 454

Query:   447 AWVQSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCF 506
              WVQ+S W+ SLIFQFLPNV +FVSMYIVIPS LSYLSKFER+LT+SGEQRAALLKMVCF
Sbjct:   455 TWVQTSGWIGSLIFQFLPNVFIFVSMYIVIPSALSYLSKFERHLTVSGEQRAALLKMVCF 514

Query:   507 FLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITST 566
             FLVNLI+L+ LVESSLESA+L+M RCYLDGEDCK+IE+YMS SFLS+SC+S LAFLITST
Sbjct:   515 FLVNLIILKALVESSLESALLKMSRCYLDGEDCKRIEEYMSPSFLSRSCVSALAFLITST 574

Query:   567 FLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDS-LQQPLISQSMFD 625
             FLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQ+EEY LENQ   S L+ PL+ ++MF+
Sbjct:   575 FLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQNEEYALENQEPSSNLETPLLPENMFE 634

Query:   626 SPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVG 685
             SP    IE   Q LSEYPISR SPIPKQ FDFAQYYAF+LTIFALT+IYSSFAPLVVPVG
Sbjct:   635 SPRFGDIEPMSQDLSEYPISRTSPIPKQKFDFAQYYAFNLTIFALTMIYSSFAPLVVPVG 694

Query:   686 AVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDXXXXXXXXXXXVQGD 745
             AVYFGYRY+VDKYNFL+VYRVRGFPAGN+G+LMDTVL IMRFCVD           V+GD
Sbjct:   695 AVYFGYRYIVDKYNFLYVYRVRGFPAGNEGKLMDTVLCIMRFCVDLYLVSMLLFFSVKGD 754

Query:   746 STKLQAIFTLGLLVLYKLLPSDHDSFHPTLLEGIQTVDSIVDGPIDYEVHSQPRFDWDTH 805
             STKLQAIFTLG+LV+YKLLPSD D +HP LL  IQTVDSI+DGP+DYE +S P FDWDT+
Sbjct:   755 STKLQAIFTLGVLVMYKLLPSDTDRYHPALLRSIQTVDSIIDGPVDYEAYSHPNFDWDTY 814

Query:   806 H 806
             +
Sbjct:   815 N 815
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0006623 "protein targeting to vacuole" evidence=IMP
ZFIN|ZDB-GENE-030131-4320 tmem63ba "transmembrane protein 63Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MY22 TMEM63B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H3BLW6 TMEM63B "Transmembrane protein 63B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQV6 TMEM63B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBB2 TMEM63B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T3F8 TMEM63B "Transmembrane protein 63B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2387609 Tmem63b "transmembrane protein 63b" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310207 Tmem63c "transmembrane protein 63c" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7I8 TMEM63B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query807
pfam02714325 pfam02714, DUF221, Domain of unknown function DUF2 5e-33
COG5594827 COG5594, COG5594, Uncharacterized integral membran 6e-15
pfam13967151 pfam13967, RSN1_TM, Late exocytosis, associated wi 4e-11
COG5594827 COG5594, COG5594, Uncharacterized integral membran 1e-06
>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221 Back     alignment and domain information 
 Score =  129 bits (328), Expect = 5e-33
 Identities = 93/407 (22%), Positives = 156/407 (38%), Gaps = 83/407 (20%)

Query: 335 AFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGL 394
           AFV FK    A  A Q  ++                    +W    AP   DI W +L L
Sbjct: 1   AFVTFKSQAAAQMAAQALQHHNPL----------------KWPTYLAPEPRDIIWENLSL 44

Query: 395 TKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWV-QSSS 453
           ++    LRR++VN  L L+++F++ P+A +  +S+   +           +L W+     
Sbjct: 45  SRWERWLRRLIVNLLLFLLIIFWAIPVAFVGLLSNLETLTKVW------PFLKWILDLPP 98

Query: 454 WLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLIL 513
            L  L+   LP +++ + M ++ P +L +LSK + + + S  + +   K   F +VN+ L
Sbjct: 99  VLLGLVTGLLPTLLLSLLMALL-PIILRFLSKLQGHPSRSDVELSVQSKYFAFLVVNVFL 157

Query: 514 LRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFD 573
           +      +L S    +    +D      I   + A+ L K+    +++++     G + +
Sbjct: 158 V-----VTLASTASSLITEIIDNP--TSI-PTLLATNLPKASNFFISYILLQGLSGAAGE 209

Query: 574 LLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIE 633
           L                   LQL P                   LI         ++   
Sbjct: 210 L-------------------LQLGP-------------------LIL-YYIRRKFLDKTP 230

Query: 634 HQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRY 693
                    P          +FD+   Y   L IF + LIYS  APL++P G VYFG  Y
Sbjct: 231 RDKWERYTTP---------PSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGY 281

Query: 694 VVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFF 740
            V KY  L+VY        + G      L  +   + LF L ++  F
Sbjct: 282 FVYKYQLLYVYV---TKYESGGLFWPRALNRLLVGLYLFQLCLIGLF 325

This family consists of hypothetical transmembrane proteins none of which have any function, the aligned region is at 538 residues at maximum length. Length = 325
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|222479 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport Back     alignment and domain information
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 807
COG5594827 Uncharacterized integral membrane protein [Functio 100.0
KOG1134728 consensus Uncharacterized conserved protein [Gener 100.0
PF02714325 DUF221: Domain of unknown function DUF221; InterPr 100.0
PF13967157 RSN1_TM: Late exocytosis, associated with Golgi tr 99.95
PF04547452 Anoctamin: Calcium-activated chloride channel; Int 98.58
PF1470385 DUF4463: Domain of unknown function (DUF4463) 98.53
KOG2513647 consensus Protein required for meiotic chromosome 96.83
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 96.5
KOG0144510 consensus RNA-binding protein CUGBP1/BRUNO (RRM su 96.35
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 95.51
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 95.02
TIGR01628562 PABP-1234 polyadenylate binding protein, human typ 94.95
TIGR01648578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 94.8
KOG0122270 consensus Translation initiation factor 3, subunit 94.56
TIGR01645612 half-pint poly-U binding splicing factor, half-pin 93.57
KOG0117506 consensus Heterogeneous nuclear ribonucleoprotein 93.53
TIGR01648578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 93.46
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 92.92
TIGR01628562 PABP-1234 polyadenylate binding protein, human typ 90.54
TIGR01622457 SF-CC1 splicing factor, CC1-like family. A homolog 89.93
TIGR01642509 U2AF_lg U2 snRNP auxilliary factor, large subunit, 89.44
KOG0145360 consensus RNA-binding protein ELAV/HU (RRM superfa 87.91
PF1389356 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or 86.83
PLN03121243 nucleic acid binding protein; Provisional 85.03
PF0405997 RRM_2: RNA recognition motif 2; InterPro: IPR00720 84.34
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 82.48
PLN03120260 nucleic acid binding protein; Provisional 82.08
>COG5594 Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-110  Score=939.74  Aligned_cols=650  Identities=23%  Similarity=0.338  Sum_probs=557.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhhheeecCCCCCCCC----------------CchhhhhhHHhhcCChhHHHHHhCCcHHHH
Q 044501           31 NIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPG----------------PAALLTKLLAVWHATCREIARHCGADAAQF   94 (807)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~~~f~~lR~~~~~~~~----------------p~~~~~Wi~~~~~~~d~~i~~~~GlDa~~f   94 (807)
                      ..++++++.+++.++++++++|++||+|.||+|+                |+|+|+|+.++++++|+.+++++|+|||+|
T Consensus        21 ~~~~~t~l~f~~~~~~~~l~~f~iLR~r~k~lY~pr~~~~~~~~~~P~~~~ss~~gWl~~L~~i~d~~~l~~aGlD~y~f  100 (827)
T COG5594          21 TSAVITQLVFAGLIFLVFLILFLILRKRWKRLYAPRTNFDGQNECLPEPNPSSYWGWLEPLVKIPDEFLLQYAGLDGYFF  100 (827)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcceeecCCCcccCCCCccchHHHHHHHHhCCHHHHHHHcCcchhhH
Confidence            5678899999999999999999999998877665                478999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeeec-----CCCCCCCCccccccccccccCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 044501           95 LLIEGGSFVVLLSVAVASILVLLPLNLY-----GGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVE  169 (807)
Q Consensus        95 Lrflr~~~~if~~~~~~~~~iLlPvn~t-----~~~~~~~~~~~~lTisNv~~~~~~lw~h~i~~~i~~~~~~~~l~~~~  169 (807)
                      |||+|||+++|+++|+++++||+|||++     .|+.+..++++++|++|++ +++++|+|++.+|++.++++|.+  ++
T Consensus       101 Lrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~gn~~s~s~l~~Ls~~Nv~-~~n~~~aHvf~~~~f~~~vlfii--~~  177 (827)
T COG5594         101 LRFLKMLIKLLFILSLILIPILLPVNYHFQKATNGNSDSESGLDKLSISNVS-PSNRLYAHVFLSWFFFGYVLFII--FR  177 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHhHEeeeeeecccccccCCccchhhhhHhhhhccc-CCCceeeeeehhHHHHHHHHHHH--HH
Confidence            9999999999999999999999999955     4443457799999999997 48999999999999999999998  89


Q ss_pred             HHHHhHHhhcccCCCCCCCCCcc-------cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcchHHHHHH
Q 044501          170 ERLKVTRFRDGNGNLSDPNANST-------AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLAT  242 (807)
Q Consensus       170 e~~~~~~~R~~~~~~s~~~~~~~-------~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~~L~~L~~  242 (807)
                      |+++|..+||++++ ++.++++.       ++|||+++++|.++++| ++|.++|+++.-|.+.+..+|||.+.++++.+
T Consensus       178 el~~y~~lr~a~~~-~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~~-e~L~~~~~kl~~~~i~~~~l~~~~~~l~~l~k  255 (827)
T COG5594         178 ELRFYVVLRQAYLR-SPLYQQSLLTLQNNLSSRTVLISGLPSELRSD-EELKELFDKLKVGEIDSDVLCRDLGTLQELYK  255 (827)
T ss_pred             HHHHHHHHHHHHHc-cHHHHHHHHhhccCCCCceEEeecCChhhcCc-hhHHHHHhhcCeeeeccchhhhhhHHHHHHHH
Confidence            99999999999964 55566666       99999999999999976 46999999988888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCC----CCCC----CCC--C--------CCCcccceeeEeccccccccccccccccchH
Q 044501          243 ELIRVRDEITWLVARIDSRLLPD----DNEN----DGN--E--------NQGFFCWVVYVWRKVKFLWGKVMDRLGFTDE  304 (807)
Q Consensus       243 ~r~~~~~kLE~~~~k~~~k~~~~----~~~~----~~~--~--------~~~~~~~~~~~~~r~~~l~g~kvD~i~y~~~  304 (807)
                      +|++..+++|.++.++..+..+.    .++.    ..+  +        .|+.+.+.+++.++-++++|||||+|||++ 
T Consensus       256 ~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVdaI~y~s-  334 (827)
T COG5594         256 ERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVDAIDYYS-  334 (827)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceecHHHHHH-
Confidence            99999999999887664221111    0000    000  0        011222222222233367899999999996 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501          305 VRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA  384 (807)
Q Consensus       305 eki~~l~~l~~ei~~~~~~~~~~~~~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P  384 (807)
                      +++   .++.+++++.|+...+  ..++++|||||+|+..||.|+|...++++.               ...+++.||+|
T Consensus       335 ~~l---~~l~~~i~~~r~~~~~--~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~---------------~~~~v~iapaP  394 (827)
T COG5594         335 AKL---TKLDAEIENARKSLYE--NTPTKSGFITFKSQASAQIAAQSQIYSRVL---------------GKLKVEIAPAP  394 (827)
T ss_pred             HHH---HHHHHHHHHHHhCccc--cCccccEEEEEehhHHHHHHHHhhhhhhhh---------------cceeeeecCCc
Confidence            555   4455677776665433  345779999999999999999998877432               12369999999


Q ss_pred             CCeeeCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHhh-hcchhhHHHHHhhh
Q 044501          385 TDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWV-QSSSWLASLIFQFL  463 (807)
Q Consensus       385 ~DIiW~NL~~~~~~r~~R~~~~~~~~~~liif~~iPv~~v~~ls~~~~~~~~~~l~~~~~~l~~i-~~~~~~~~ii~~~l  463 (807)
                      +||+|+|+..++++|..|++.+++++++++++|++|||+|+.++|+      +++.+.+||++.+ .+++++.++++|+|
T Consensus       395 nDi~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl------~~l~~~~p~l~~il~~~~~l~~iltglL  468 (827)
T COG5594         395 NDIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISNL------NTLSSLWPFLKFILKDPPFLAGILTGLL  468 (827)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------hhHhhhhHHHHHHHhccHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999987      5689999999976 46999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcccCCcchhhHH
Q 044501          464 PNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIE  543 (807)
Q Consensus       464 P~l~L~~l~~~llP~ii~~ls~~eg~~t~S~~~~~~~~k~f~f~~vnvflv~~l~~s~~~~~i~~i~~~~~~~~~~~~i~  543 (807)
                      |++++.++|+ ++|.++|+++.+||..|+|+.|+.++.|||+|+++|+|+|.+++++. ++.++++    .+  +|.++.
T Consensus       469 ptv~~~~l~~-ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~f-ss~v~~~----~k--e~~s~~  540 (827)
T COG5594         469 PTVALSLLMS-IVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSF-SSIVWSL----LK--EPTSIM  540 (827)
T ss_pred             hHHHHHHHHH-HhHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHH-HHHHHHH----hc--ChHhHH
Confidence            9999998776 99999999999999999999999999999999999999999998864 4445443    44  789999


Q ss_pred             HhhhhccccccchhHHHHHHHHHhhhhHHHhhcChhhHHHHHH-HhhhhccccccccccccccccccCcccccccccccc
Q 044501          544 QYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQ-KFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQS  622 (807)
Q Consensus       544 ~~l~~~~lp~~~~ff~~yii~~~~~~~~~~Llr~~pli~~~i~-~~~~~~~~~l~~~~~~~Y~~~~~~~~~~~r~~~~~~  622 (807)
                      .+| |.++|++|+||++|+++||+.+.+++|+|+++|++.++. ++                                  
T Consensus       541 ~ll-A~~lpk~SnFfi~~iilqgl~~~~~~LLqi~~Ll~~~vl~kf----------------------------------  585 (827)
T COG5594         541 TLL-ANNLPKASNFFISYIILQGLSGFPGTLLQIVPLLLSLVLGKF----------------------------------  585 (827)
T ss_pred             HHH-HhccHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhh----------------------------------
Confidence            998 899999999999999999999999999999999987664 22                                  


Q ss_pred             ccCCcchhHHhhhcccccccCCCCCCCCCCCCcchhhhhHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhhhceeEE
Q 044501          623 MFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLF  702 (807)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~f~~g~~ya~~l~v~~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky~lly  702 (807)
                       ++++.+++|+|    .          ..++.|++|..||+.+++++|++|||+|||+|+.||++||++.|++|||+++|
T Consensus       586 -~~~TpR~k~nr----~----------~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~l~Y  650 (827)
T COG5594         586 -KDSTPRQKWNR----L----------ETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNLIY  650 (827)
T ss_pred             -cCCChHHHHhh----c----------cCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             11222333543    1          12579999999999999999999999999999999999999999999999999


Q ss_pred             EeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHhc-CccCccchhH
Q 044501          703 VYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLP-SDHDSFHPTL  775 (807)
Q Consensus       703 vy~~~~e~~~s~G~~~~~~~~~~~~~l~l~q~~~~~~f~~~~~~~~~~~~~~i~l~~~t~~~~-~~~~~~~~~~  775 (807)
                      |++.+.   |+||+.||++++|+++|++++|+||+|+|++.++|  +.+.+++|++++|.++| +++..|+|+.
T Consensus       651 v~~~~~---es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~--~ls~~~~p~~~~Tvi~~~~~~~~f~pl~  719 (827)
T COG5594         651 VSNHSP---ESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGW--GLSVLLFPLIVFTVIFHYYFKKMFDPLS  719 (827)
T ss_pred             ccCCCc---ccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcc--eeEeehHHHHHHHHHHHHHHHHhhcccc
Confidence            999864   57999999999999999999999999999999988  88999999999999999 9999999775

>KOG1134 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length Back     alignment and domain information
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport Back     alignment and domain information
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [] Back     alignment and domain information
>PF14703 DUF4463: Domain of unknown function (DUF4463) Back     alignment and domain information
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family Back     alignment and domain information
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>TIGR01622 SF-CC1 splicing factor, CC1-like family Back     alignment and domain information
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF13893 RRM_5: RNA recognition motif Back     alignment and domain information
>PLN03121 nucleic acid binding protein; Provisional Back     alignment and domain information
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>PLN03120 nucleic acid binding protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query807
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 78/646 (12%), Positives = 171/646 (26%), Gaps = 221/646 (34%)

Query: 132 FSKTTINHI-EKGSGLLWIHFLFVVLVVFLVHIGMHGVEERLK------VTRFRDGNGNL 184
            SK  I+HI      +     LF  L+     +    VEE L+      ++  +      
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--- 102

Query: 185 SDPNANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVY---KVIMPMDLC---ALD 238
             P+  +                        Y + +   ++Y   +V    ++       
Sbjct: 103 RQPSMMT----------------------RMYIEQR--DRLYNDNQVFAKYNVSRLQPYL 138

Query: 239 DLATELIRVRDEI------------TWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWR 286
            L   L+ +R               TW+   +              + + F       W 
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKMDFKIF-------WL 187

Query: 287 KVKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTAN 346
            +             + E  L  LQ+L  +++    +  +  +                 
Sbjct: 188 NL----KNC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSN---------------- 222

Query: 347 KAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLV 406
             ++   +  +    +                E   L      N       +L   ++L+
Sbjct: 223 --IKLRIHSIQAELRRLLK---------SKPYENCLLVLLNVQNAKAWNAFNLSC-KILL 270

Query: 407 NTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLI---FQFL 463
            T              V + +S+A       ++D+    L   +  S L   +    Q L
Sbjct: 271 TT----------RFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 464 PNVIVFVSMYIVIPSVLS--------YLSKFERYLTMSGEQRAALLKMVCFFLVNLILLR 515
           P  ++  +     P  LS         L+ ++ +  ++ ++                 L 
Sbjct: 319 PREVLTTN-----PRRLSIIAESIRDGLATWDNWKHVNCDK-----------------LT 356

Query: 516 GLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLL 575
            ++ESSL           L+  + +K   +                      L + F   
Sbjct: 357 TIIESSLNV---------LEPAEYRK--MFDR--------------------LSV-FPPS 384

Query: 576 APIP-------WIKKK-------IQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQ 621
           A IP       W           + K  K  +++  P++S    + +   +   +     
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSIYLELKVKLENEY 443

Query: 622 SMFDSPTMNAIEHQGQALSEYPISR---PSPIPKQTFD--FAQYYAFDLTIFALTLIYSS 676
           ++          H+   +  Y I +      +     D  F  +    L         + 
Sbjct: 444 AL----------HR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 677 FAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVL 722
           F         V+  +R++  K       R         G +++T+ 
Sbjct: 493 FR-------MVFLDFRFLEQK------IRHDSTAWNASGSILNTLQ 525
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query807
2dnz_A95 Probable RNA-binding protein 23; RNA recognition m 97.12
4fxv_A99 ELAV-like protein 1; RNA recognition motif, putati 97.06
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 97.01
1whw_A99 Hypothetical protein riken cDNA 1200009A02; RNA re 96.98
3s8s_A110 Histone-lysine N-methyltransferase SETD1A; chromat 96.94
1x5u_A105 Splicing factor 3B subunit 4 (spliceosome associat 96.87
2cph_A107 RNA binding motif protein 19; RNA recognition moti 96.84
2dgs_A99 DAZ-associated protein 1; RRM domain, structural g 96.82
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 96.82
2x1f_A96 MRNA 3'-END-processing protein RNA15; transcriptio 96.81
3mdf_A85 Peptidyl-prolyl CIS-trans isomerase E; RRM domain, 96.79
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 96.78
2cqc_A95 Arginine/serine-rich splicing factor 10; RNA recog 96.77
2do4_A100 Squamous cell carcinoma antigen recognized by T- c 96.75
2e5h_A94 Zinc finger CCHC-type and RNA-binding motif- conta 96.75
2dgo_A115 Cytotoxic granule-associated RNA binding protein 1 96.72
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 96.72
1x5s_A102 Cold-inducible RNA-binding protein; structure geno 96.71
4a8x_A88 RNA-binding protein with serine-rich domain 1; tra 96.69
2jrs_A108 RNA-binding protein 39; RNA binding motif of RBM39 96.67
3bs9_A87 Nucleolysin TIA-1 isoform P40; RNA recognition mot 96.66
1p27_B106 RNA-binding protein 8A; nuclear protein, mRNA spli 96.61
2cq0_A103 Eukaryotic translation initiation factor 3 subunit 96.6
4f25_A115 Polyadenylate-binding protein 1; RRM fold, transla 96.56
2dgp_A106 Bruno-like 4, RNA binding protein; RRM domain, str 96.56
2cqd_A116 RNA-binding region containing protein 1; RNA recog 96.55
1x4h_A111 RNA-binding protein 28; structural genomics, RRM d 96.55
2dgv_A92 HnRNP M, heterogeneous nuclear ribonucleoprotein M 96.54
1oo0_B110 CG8781-PA, drosophila Y14; RNA recognition motif, 96.54
3md1_A83 Nuclear and cytoplasmic polyadenylated RNA-bindin 96.53
1x5t_A96 Splicing factor 3B subunit 4; structure genomics, 96.51
2d9p_A103 Polyadenylate-binding protein 3; RRM domain, struc 96.5
2cqb_A102 Peptidyl-prolyl CIS-trans isomerase E; RNA recogni 96.5
2dnm_A103 SRP46 splicing factor; RRM domain, RBD, structural 96.48
1wi8_A104 EIF-4B, eukaryotic translation initiation factor 4 96.47
2lkz_A95 RNA-binding protein 5; RRM; NMR {Homo sapiens} 96.45
2cpz_A115 CUG triplet repeat RNA-binding protein 1; RRM doma 96.4
3p5t_L90 Cleavage and polyadenylation specificity factor S; 96.4
3md3_A166 Nuclear and cytoplasmic polyadenylated RNA-bindin 96.37
2dnh_A105 Bruno-like 5, RNA binding protein; RRM domain, RBD 96.35
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 96.35
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 96.34
3ex7_B126 RNA-binding protein 8A; protein-RNA complex, mRNA 96.3
2fy1_A116 RNA-binding motif protein, Y chromosome, family 1 96.27
2khc_A118 Testis-specific RNP-type RNA binding protein; RRM, 96.25
1h2v_Z156 20 kDa nuclear CAP binding protein; CAP-binding-co 96.24
2dng_A103 Eukaryotic translation initiation factor 4H; RRM d 96.17
2la6_A99 RNA-binding protein FUS; structural genomics, nort 96.17
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 96.16
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 96.15
2kxn_B129 Transformer-2 protein homolog beta; SR protein, RR 96.14
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 96.12
2dnq_A90 RNA-binding protein 4B; RRM domain,RBD, structural 96.1
2cpj_A99 Non-POU domain-containing octamer-binding protein; 96.07
2kt5_A124 RNA and export factor-binding protein 2; chaperone 96.07
3ns6_A100 Eukaryotic translation initiation factor 3 subuni; 96.05
1x4g_A109 Nucleolysin TIAR; structural genomics, RRM domain, 96.04
1u6f_A139 Tcubp1, RNA-binding protein UBP1; trypanosome, mRN 95.97
2dgx_A96 KIAA0430 protein; RRM domain, structural genomics, 95.95
1p1t_A104 Cleavage stimulation factor, 64 kDa subunit; RNA r 95.91
2dis_A109 Unnamed protein product; structural genomics, RRM 95.79
2cpe_A113 RNA-binding protein EWS; RNA recognition motif, RR 95.78
2cpi_A111 CCR4-NOT transcription complex subunit 4; RNA reco 95.75
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 95.7
3lqv_A115 PRE-mRNA branch site protein P14; cysless mutant, 95.65
2lea_A135 Serine/arginine-rich splicing factor 2; SR protein 95.64
2kn4_A158 Immunoglobulin G-binding protein G, splicing FACT 95.61
2nlw_A105 Eukaryotic translation initiation factor 3 subunit 95.58
2j76_E100 EIF-4B, EIF4B, eukaryotic translation initiation f 95.53
2ki2_A90 SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA 95.52
1nu4_A97 U1A RNA binding domain; RNA recognition motif, U1 95.49
2fc8_A102 NCL protein; structure genomics, RRM_1 domain, str 95.47
3n9u_C156 Cleavage and polyadenylation specificity factor S; 95.31
2i2y_A150 Fusion protein consists of immunoglobin G- binding 95.28
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 95.27
2ek1_A95 RNA-binding protein 12; RNA recognition motif, dim 95.24
2f3j_A177 RNA and export factor binding protein 2; RRM domai 95.18
1wf1_A110 RNA-binding protein RALY; structural genomics, RRM 95.11
1rk8_A165 CG8781-PA, CG8781-PA protein; mRNA processing, RRM 95.01
2jvo_A108 Nucleolar protein 3; nucleus, phosphorylation, rib 94.91
3sde_A261 Paraspeckle component 1; RRM, anti parallel right 94.8
2adc_A229 Polypyrimidine tract-binding protein 1; RBD, RRM, 94.65
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 94.61
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 94.54
3tyt_A205 Heterogeneous nuclear ribonucleoprotein L; ferredo 94.36
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 94.27
2g4b_A172 Splicing factor U2AF 65 kDa subunit; protein-RNA c 94.1
3q2s_C229 Cleavage and polyadenylation specificity factor S; 93.98
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 93.27
2ghp_A292 U4/U6 snRNA-associated splicing factor PRP24; RNA 93.22
2diu_A96 KIAA0430 protein; structural genomics, RRM domain, 93.17
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 92.77
1s79_A103 Lupus LA protein; RRM, alpha/beta, RNA binding pro 92.46
1jmt_A104 Splicing factor U2AF 35 kDa subunit; RRM, RNA spli 92.33
3s7r_A87 Heterogeneous nuclear ribonucleoprotein A/B; ferre 92.0
3smz_A284 Protein raver-1, ribonucleoprotein PTB-binding 1; 91.64
2cpd_A99 Apobec-1 stimulating protein; RNA recognition moti 91.56
3pgw_A282 U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c 91.52
2ywk_A95 Putative RNA-binding protein 11; RRM-domain, struc 91.43
2ytc_A85 PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s 91.24
1wex_A104 Hypothetical protein (riken cDNA 2810036L13); stru 91.22
1sjq_A105 Polypyrimidine tract-binding protein 1; babbab mot 91.15
3r27_A100 HnRNP L, heterogeneous nuclear ribonucleoprotein L 90.85
3ucg_A89 Polyadenylate-binding protein 2; ferredoxin-like, 90.84
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 90.76
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 90.25
1wf0_A88 TDP-43, TAR DNA-binding protein-43; structural gen 90.23
2dnp_A90 RNA-binding protein 14; RRM domain, RBD, structura 90.2
2cpf_A98 RNA binding motif protein 19; RNA recognition moti 89.98
2dit_A112 HIV TAT specific factor 1 variant; structural geno 89.89
2do0_A114 HnRNP M, heterogeneous nuclear ribonucleoprotein M 89.86
2dgt_A92 RNA-binding protein 30; RRM domain, structural gen 89.77
2cqg_A103 TDP-43, TAR DNA-binding protein-43; RNA recognitio 89.66
2cq1_A101 PTB-like protein L; RRM domain, structural genomic 89.59
3v4m_A105 Splicing factor U2AF 65 kDa subunit; canonical RNA 89.49
3s6e_A114 RNA-binding protein 39; ferredoxin-like, structura 89.37
2dhg_A104 TRNA selenocysteine associated protein (SECP43); R 89.27
1x4d_A102 Matrin 3; structural genomics, RRM domain, NPPSFA, 89.17
2xs2_A102 Deleted in azoospermia-like; RNA binding protein-R 89.15
2dh8_A105 DAZ-associated protein 1; RRM domain, structural g 89.08
2ad9_A119 Polypyrimidine tract-binding protein 1; RBD, RRM, 88.98
1why_A97 Hypothetical protein riken cDNA 1810017N16; RNA re 88.91
1x4e_A85 RNA binding motif, single-stranded interacting pro 88.89
3ulh_A107 THO complex subunit 4; nuclear protein, RNA bindin 88.85
2rs2_A109 Musashi-1, RNA-binding protein musashi homolog 1; 88.83
1wg1_A88 KIAA1579 protein, homolog EXC-7; RBD, structural g 88.51
2krb_A81 Eukaryotic translation initiation factor 3 subunit 88.48
2cq4_A114 RNA binding motif protein 23; RRM domain, structur 88.33
2dgu_A103 Heterogeneous nuclear ribonucleoprotein Q; RRM dom 88.28
1x4c_A108 Splicing factor, arginine/serine-rich 1; structura 88.08
2div_A99 TRNA selenocysteine associated protein; structural 87.9
1uaw_A77 Mouse-musashi-1; RNP-type structure, RNA binding p 87.5
2cqp_A98 RNA-binding protein 12; RNA recognition motif, RRM 87.16
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 86.86
1x5o_A114 RNA binding motif, single-stranded interacting pro 86.13
2e44_A96 Insulin-like growth factor 2 mRNA binding protein 86.11
1iqt_A75 AUF1, heterogeneous nuclear ribonucleoprotein D0; 86.07
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 85.79
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 85.76
3nmr_A175 Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl 85.4
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 85.15
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 85.13
2jwn_A124 Embryonic polyadenylate-binding protein 2-B; epabp 85.13
3beg_B115 Splicing factor, arginine/serine-rich 1; kinase, S 85.02
2jvr_A111 Nucleolar protein 3; RNA recognition motif, nucleu 84.74
2a3j_A127 U1 small nuclear ribonucleoprotein A; computationa 84.59
2fc9_A101 NCL protein; structure genomics, RRM_1 domain, str 84.38
1x5p_A97 Negative elongation factor E; structure genomics, 84.36
1fj7_A101 Nucleolin RBD1, protein C23; RNP, RRM, RNA binding 84.09
2pe8_A105 Splicing factor 45; RRM, protein binding; 2.00A {H 83.84
2dgu_A103 Heterogeneous nuclear ribonucleoprotein Q; RRM dom 83.68
1x4b_A116 Heterogeneous nuclear ribonucleoproteins A2/B1; st 83.64
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 83.43
1whx_A111 Hypothetical protein riken cDNA 1200009A02; RNA re 83.13
2mss_A75 Protein (musashi1); RNA-binding domain, RNA bindin 83.12
1fjc_A96 Nucleolin RBD2, protein C23; RNP, RRM, RNA binding 83.06
1x4f_A112 Matrin 3; structural genomics, RRM domain, NPPSFA, 82.98
2la4_A101 Nuclear and cytoplasmic polyadenylated RNA-bindin 82.8
2hvz_A101 Splicing factor, arginine/serine-rich 7; RRM, RNA 82.71
2e5g_A94 U6 snRNA-specific terminal uridylyltransferase 1; 82.7
2hzc_A87 Splicing factor U2AF 65 kDa subunit; RNA splicing, 82.43
2m2b_A131 RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio 82.34
2e44_A96 Insulin-like growth factor 2 mRNA binding protein 82.08
2cpx_A115 Hypothetical protein FLJ11016; RRM domain, structu 81.97
2kvi_A96 Nuclear polyadenylated RNA-binding protein 3; RNA- 81.77
2hvz_A101 Splicing factor, arginine/serine-rich 7; RRM, RNA 81.51
1why_A97 Hypothetical protein riken cDNA 1810017N16; RNA re 81.4
2wbr_A89 GW182, gawky, LD47780P; DNA-binding protein, RRM, 81.38
2xnq_A97 Nuclear polyadenylated RNA-binding protein 3; tran 81.18
2mss_A75 Protein (musashi1); RNA-binding domain, RNA bindin 80.97
2kvi_A96 Nuclear polyadenylated RNA-binding protein 3; RNA- 80.9
2cqh_A93 IGF-II mRNA-binding protein 2 isoform A; RNA recog 80.8
1whx_A111 Hypothetical protein riken cDNA 1200009A02; RNA re 80.56
2d9o_A100 DNAJ (HSP40) homolog, subfamily C, member 17; RRM 80.48
2cpf_A98 RNA binding motif protein 19; RNA recognition moti 80.37
2dnl_A114 Cytoplasmic polyadenylation element binding protei 80.33
2cpd_A99 Apobec-1 stimulating protein; RNA recognition moti 80.32
2dgt_A92 RNA-binding protein 30; RRM domain, structural gen 80.29
2dnp_A90 RNA-binding protein 14; RRM domain, RBD, structura 80.23
2xnq_A97 Nuclear polyadenylated RNA-binding protein 3; tran 80.21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=97.12  E-value=0.0037  Score=53.71  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501          193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP  231 (807)
Q Consensus       193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~  231 (807)
                      ..+||.|.|||.+..  +++|+++|+++  |.|.+|.+.
T Consensus         4 ~~~~l~v~nlp~~~t--~~~l~~~f~~~--G~v~~v~i~   38 (95)
T 2dnz_A            4 GSSGLYVGSLHFNIT--EDMLRGIFEPF--GKIDNIVLM   38 (95)
T ss_dssp             CCCEEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEEE
T ss_pred             CCcEEEEeCCCCCCC--HHHHHHHHHhc--CCEeEEEEe
Confidence            479999999999875  68999999985  567777644
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Back     alignment and structure
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Back     alignment and structure
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Back     alignment and structure
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Back     alignment and structure
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Back     alignment and structure
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Back     alignment and structure
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Back     alignment and structure
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Back     alignment and structure
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 Back     alignment and structure
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Back     alignment and structure
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Back     alignment and structure
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Back     alignment and structure
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Back     alignment and structure
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Back     alignment and structure
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Back     alignment and structure
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Back     alignment and structure
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Back     alignment and structure
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Back     alignment and structure
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Back     alignment and structure
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B Back     alignment and structure
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Back     alignment and structure
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Back     alignment and structure
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Back     alignment and structure
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Back     alignment and structure
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Back     alignment and structure
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Back     alignment and structure
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Back     alignment and structure
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Back     alignment and structure
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Back     alignment and structure
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Back     alignment and structure
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Back     alignment and structure
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Back     alignment and structure
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Back     alignment and structure
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Back     alignment and structure
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Back     alignment and structure
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Back     alignment and structure
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Back     alignment and structure
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Back     alignment and structure
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Back     alignment and structure
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Back     alignment and structure
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Back     alignment and structure
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Back     alignment and structure
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Back     alignment and structure
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Back     alignment and structure
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Back     alignment and structure
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Back     alignment and structure
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Back     alignment and structure
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Back     alignment and structure
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Back     alignment and structure
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Back     alignment and structure
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Back     alignment and structure
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Back     alignment and structure
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Back     alignment and structure
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Back     alignment and structure
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} Back     alignment and structure
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Back     alignment and structure
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Back     alignment and structure
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Back     alignment and structure
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 807
d1u1qa_183 d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 0.004
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 27/187 (14%), Positives = 53/187 (28%), Gaps = 13/187 (6%)

Query: 196 TIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLATELIRVRDEITWLV 255
            + + GL          +  +F+ ++ G +   ++  D           +          
Sbjct: 8   KLFIGGLSFE--TTDESLRSHFE-QW-GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63

Query: 256 ARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRLGFTDEVRLRNLQELRA 315
           A +++R    D      +              +      V      T+E  LR+  E   
Sbjct: 64  A-MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 122

Query: 316 ELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQ 375
           ++E        G     G AFV F D  + +K V    +                +++  
Sbjct: 123 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH--------NCEVRKAL 174

Query: 376 WKVERAP 382
            K E A 
Sbjct: 175 SKQEMAS 181

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query807
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 97.48
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 97.41
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 97.37
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 97.36
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 97.32
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 97.31
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 97.27
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 97.24
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 97.15
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 97.14
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 97.12
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 97.11
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 97.06
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.04
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 96.94
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 96.93
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 96.83
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 96.82
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 96.82
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 96.72
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 96.7
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 96.66
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 96.66
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 96.62
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 96.59
d1u6fa1139 RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId 96.56
d2adca1109 Polypyrimidine tract-binding protein {Human (Homo 96.54
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 96.53
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 96.52
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 96.5
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 96.46
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 96.28
d1x4ba1103 Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu 96.25
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 96.24
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 96.09
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 95.93
d1x4fa199 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 95.93
d2disa196 Hypothetical protein FLJ20273 {Human (Homo sapiens 95.69
d2cpda186 APOBEC1 stimulating protein {Human (Homo sapiens) 95.59
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 95.41
d2cpxa1102 RNA-binding protein 41, RBM41 {Human (Homo sapiens 95.33
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 94.61
d2b0ga183 Splicesomal U1A protein {Drosophila melanogaster [ 93.62
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 93.24
d1wi6a175 Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M 93.1
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 92.99
d1whya_97 Putative RNA-binding protein 15B, Rbm15b {Mouse (M 92.72
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 92.23
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 91.94
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 91.72
d1wexa_104 Heterogeneous nuclear ribonucleoprotein L-like {Mo 91.68
d2cq1a188 Polypyrimidine tract-binding protein 2, PTBP2 {Hum 91.32
d1wf2a_98 Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu 91.16
d2cpja186 Non-POU domain-containing octamer-binding protein, 90.63
d1x5ta183 Splicing factor 3B subunit 4 {Human (Homo sapiens) 90.59
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 90.35
d1wg1a_88 Probable RNA-binding protein KIAA1579 {Human (Homo 89.93
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 89.89
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 89.79
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 89.54
d1wg4a_98 Splicing factor, arginine/serine-rich 9 (SFRS9) {M 89.06
d1nu4a_91 Splicesomal U1A protein {Human (Homo sapiens) [Tax 88.42
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 88.15
d2dita199 HIV Tat-specific factor 1 {Human (Homo sapiens) [T 88.13
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_104 U2 87.22
d2adca288 Polypyrimidine tract-binding protein {Human (Homo 86.93
d1x4da189 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 86.8
d1o0pa_104 Splicing factor U2AF 65 KDa subunit {Human (Homo s 86.73
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 86.67
d2bz2a179 Negative elongation factor E, NELF-E {Human (Homo 86.43
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 86.35
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 86.06
d1weya_104 Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 85.39
d1x5oa1101 RNA-binding motif, single-stranded-interacting pro 85.25
d2cpja186 Non-POU domain-containing octamer-binding protein, 85.21
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 83.26
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 82.99
d2cqha180 IGF-II mRNA-binding protein 2 isoform A {Human (Ho 82.98
d2adca288 Polypyrimidine tract-binding protein {Human (Homo 82.11
d2cpia189 E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc 81.71
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 81.6
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 80.83
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 80.68
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.48  E-value=0.00019  Score=58.41  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=28.3

Q ss_pred             cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501          193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP  231 (807)
Q Consensus       193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~  231 (807)
                      ++.||.|.|||.+..  +++|+++|+++  |.|.++.++
T Consensus         1 s~t~l~V~nLp~~~t--~~~l~~~F~~~--G~v~~~~i~   35 (82)
T d1b7fa1           1 SNTNLIVNYLPQDMT--DRELYALFRAI--GPINTCRIM   35 (82)
T ss_dssp             CCSEEEEECCCTTCC--HHHHHHHHHTT--SCEEEEECC
T ss_pred             CCCEEEEeCCCCCCC--HHHHHHHHHHh--CCcceeeee
Confidence            367899999999985  68999999986  458877653
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure