Citrus Sinensis ID: 044532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAASSSMAPPMYFHHK
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccccccccccccccccHHHHHHHHHHcccccEEEEEEccccccEEcccccccHHHccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccccHHHHHHHHHHccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccc
Coil and Loop (DISEMBL)
maakktkgRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFsqsgkpfsfghpsieapvndnthplVEAHRQMrrgketqprwwetpvnelnhQELLQMDATIDNLHKTFLARLNEKtaaasssmappmyfhhk
Flexible Loop (DISEMBL)
maakktkgrqkiqmkrienedgrlitfskrrsgiyKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKtaaasssmappmyfhhk
Low Complexity Region (SEG)
MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTaaasssmappmYFHHK
Disordered region (IsUnstruct)
***********************LITFSKRRSGIYKKASELVTLTGSEIAILVFSQSG*************************************WWETPVNELNHQELLQMDATIDNLHKTFLARL********************
Disordered Region (DISOPRED)
***********IQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTH**************************LNHQELLQMDATIDNL****************************
Disordered Region (DISEMBL)
*************MKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTHPLVEA**********QPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAASSSMAPPMYFHHK
Disordered Region (DISPRO)
***********IQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTHPLVEAHRQM********RWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAAS************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAASSSMAPPMYFHHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q4PSU4	264	Agamous-like MADS-box pro	yes	no	0.829	0.462	0.396	6e-23
Q9FKK2	299	Agamous-like MADS-box pro	no	no	0.816	0.401	0.366	4e-20
Q39295	264	Agamous-like MADS-box pro	N/A	no	0.414	0.231	0.557	1e-13
Q38847	268	Agamous-like MADS-box pro	no	no	0.380	0.208	0.589	3e-13
P29386	252	Agamous-like MADS-box pro	no	no	0.442	0.257	0.492	3e-13
Q07472	231	Floral homeotic protein P	N/A	no	0.734	0.467	0.333	4e-13
Q10PZ9	257	MADS-box transcription fa	yes	no	0.707	0.404	0.347	5e-13
A2XDY1	257	MADS-box transcription fa	N/A	no	0.707	0.404	0.347	5e-13
Q6VAM4	159	MADS-box transcription fa	no	no	0.666	0.616	0.36	8e-13
Q6EU39	250	MADS-box transcription fa	no	no	0.605	0.356	0.4	9e-13

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 42/164 (25%)

Query: 8   GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
           GRQKI M +I+ E  R +TFSKRR+G++KKASEL TL G+EI I+VFS + KPFSFGHPS
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122

Query: 68  IEAPVN-----DN-----------------------THPLVEAHRQMRRG-------KET 92
           +E+ ++     +N                       TH L E   + ++G       KE+
Sbjct: 123 VESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKES 182

Query: 93  QPR----WWETPVNELNHQELLQMDATIDNLHKTF---LARLNE 129
             R    WWE PV E+N  +L +M   ++ L KT    +A  NE
Sbjct: 183 VRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNE 226

Probable transcription factor. Controls central cell differentiation during female gametophyte development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 41/161 (25%)

Query: 3   AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
            KK+KGRQKI+M +++NE    +TFSKRRSG++KKASEL TL G+E+AI+VFS   K FS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 63  FGHPSIEAPVND--NTHPLVEAH------RQMRRGKETQP-------------------- 94
           FGHP++++ ++   N +PL          R+ RR    Q                     
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 95  -------------RWWETPVNELNHQELLQMDATIDNLHKT 122
                         WWE PV EL   +L      ++NL K 
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKV 162

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR KI++KRIEN + R +TFSKRR+G+ KKA EL  L  +E+A++VFS+SGK F F   S
Sbjct: 2  GRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS 61

Query: 68 I 68
          +
Sbjct: 62 M 62

Probable transcription factor.

Brassica napus (taxid: 3708)

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
          GR KI++KRIEN + R +TFSKRRSG+ KKA EL  L  +E+A++VFS+SGK F +
Sbjct: 2  GRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY 57

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 47/65 (72%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR +++MKRIEN+  R +TFSKRR+G+ KKA EL  L  +E+A+++FS  GK + FG   
Sbjct: 2  GRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVG 61

Query: 68 IEAPV 72
          IE+ +
Sbjct: 62 IESTI 66

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 24/132 (18%)

Query: 8   GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
            R KIQ+KRIEN+  R +T+SKRR+G++KKA+EL  L  ++++I++ S +GK   F  PS
Sbjct: 2   ARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPS 61

Query: 68  IEA---------------------PVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNH 106
           I                        + +    L E +R +R  KE + R  E+ +N+LN+
Sbjct: 62  ITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLR--KEIRQRMGES-LNDLNY 118

Query: 107 QELLQMDATIDN 118
           ++L ++   +DN
Sbjct: 119 EQLEELMENVDN 130

Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.

Petunia hybrida (taxid: 4102)

>sp|Q10PZ9|MADS1_ORYSJ MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 11/115 (9%)

Query: 8   GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
           GR K+++KRIEN+  R +TF+KRR+G+ KKA EL  L  +E+A+++FS  G+ F F   S
Sbjct: 2   GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSS 61

Query: 68  IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKT 122
                    +  +E +R      +        P NE+N+QE L++   ++ L  T
Sbjct: 62  C-------MYKTLERYRSCNYNSQDAA----APENEINYQEYLKLKTRVEFLQTT 105

Probable transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules, stamens and carpels, or whorls 2, 3 and 4) and the lemma and palea (whorl 1), which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XDY1|MADS1_ORYSI MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 11/115 (9%)

Query: 8   GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
           GR K+++KRIEN+  R +TF+KRR+G+ KKA EL  L  +E+A+++FS  G+ F F   S
Sbjct: 2   GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSS 61

Query: 68  IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKT 122
                    +  +E +R      +        P NE+N+QE L++   ++ L  T
Sbjct: 62  C-------MYKTLERYRSCNYNSQDAA----APENEINYQEYLKLKTRVEFLQTT 105

Probable transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules, stamens and carpels, or whorls 2, 3 and 4) and the lemma and palea (whorl 1), which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 2/100 (2%)

Query: 8   GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
           GR KI++KRI+N   R +TFSKRRSG++KKA EL  L  +E+ +LVFS + + + F   S
Sbjct: 2   GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS 61

Query: 68  IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQ 107
           +++ +        + H+ M    E   + W+     L  Q
Sbjct: 62  MKSIIERYNETKEDPHQTMNASSE--AKLWQQEAASLRQQ 99

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR ++++KRIEN+  R +TFSKRR+G+ KKA EL  L  +E+A+++FS  GK + FG   
Sbjct: 2  GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61

Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWW 97
          I   +    H    A        ETQ  W+
Sbjct: 62 ITKTLERYQHCCYNAQDSNNALSETQS-WY 90

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
255557369	220	mads box protein, putative [Ricinus comm	0.979	0.654	0.510	2e-39
224054544	202	predicted protein [Populus trichocarpa]	0.965	0.702	0.5	1e-38
224077620	194	predicted protein [Populus trichocarpa]	0.931	0.706	0.508	4e-38
255557367	239	mads box protein, putative [Ricinus comm	0.877	0.539	0.497	1e-35
224104275	201	predicted protein [Populus trichocarpa]	0.965	0.706	0.463	2e-34
225462217	199	PREDICTED: agamous-like MADS-box protein	0.952	0.703	0.491	1e-32
449505973	269	PREDICTED: agamous-like MADS-box protein	0.904	0.494	0.418	3e-29
449434264	260	PREDICTED: agamous-like MADS-box protein	0.904	0.511	0.435	3e-29
225429161	214	PREDICTED: agamous-like MADS-box protein	0.850	0.584	0.4	4e-24
297736389	194	unnamed protein product [Vitis vinifera]	0.850	0.644	0.441	6e-24

>gi|255557369|ref|XP_002519715.1| mads box protein, putative [Ricinus communis] gi|223541132|gb|EEF42688.1| mads box protein, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 113/188 (60%), Gaps = 44/188 (23%)

Query: 1   MAAKK-TKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGK 59
           MA KK TKGRQKI MKRIENE+ RLITFSKRRSGIYKKASEL+TL G+E+ ILVFS +GK
Sbjct: 1   MAGKKQTKGRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGK 60

Query: 60  PFSFGHPSIEA----------PVNDNTHPLVEAHRQMR---------------------- 87
           PFSFGHPS+E+          P +DNTHPLVEAHR+MR                      
Sbjct: 61  PFSFGHPSLESIANRFLGKNVPPSDNTHPLVEAHRKMRINELNKQYNELLNRLESEKERG 120

Query: 88  -------RGKETQPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNEK---TAAASSS 137
                  RGK     WWE P+++LN QEL Q+ A  + LH T   ++NEK     +  SS
Sbjct: 121 SMLKKTIRGKGCN-NWWEAPIDDLNMQELEQIYAMFEELHSTLCKKMNEKRNNGVSIWSS 179

Query: 138 MAPPMYFH 145
             P M  H
Sbjct: 180 SIPQMNNH 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054544|ref|XP_002298313.1| predicted protein [Populus trichocarpa] gi|222845571|gb|EEE83118.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 114/180 (63%), Gaps = 38/180 (21%)

Query: 1   MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
           MA+KKTKGRQK++MKRIEN+D RLITFSKRRSGIYKKASEL TLTG+EIAI VFS +GKP
Sbjct: 1   MASKKTKGRQKVEMKRIENQDDRLITFSKRRSGIYKKASELATLTGAEIAIAVFSPAGKP 60

Query: 61  FSFGHPSIEAPVN---------DNTHPLVEAHRQMRRGKETQPR---------------- 95
           FSFGHPS+E+ +N         D+T+ LVEAHR+MR  + TQ                  
Sbjct: 61  FSFGHPSVESVINRFLEDPLDMDSTYHLVEAHRRMRIEELTQKHNDMQHQLDEEKEKGLK 120

Query: 96  ------------WWETPVNELNHQELLQMDATIDNLHKTFLARLNEK-TAAASSSMAPPM 142
                       WW+T V+ELN QEL++++     L  T  +++ E  +  ASSS AP +
Sbjct: 121 LKSKIKEMDSKGWWDTAVDELNIQELIELEKKFKELQMTLCSKIAENASTVASSSQAPEI 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077620|ref|XP_002305331.1| predicted protein [Populus trichocarpa] gi|222848295|gb|EEE85842.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 110/177 (62%), Gaps = 40/177 (22%)

Query: 1   MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
           M  K+T+GRQKI +KRIENED RLITFSKRRSGIYKKASELVTL G+E+A+LVFS +GK 
Sbjct: 1   MEGKQTRGRQKIAIKRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVAVLVFSPAGKA 60

Query: 61  FSFGHPSIEAPV----------NDNTHPLVEAHRQMR--------------------RGK 90
           FSFGHPSIE+            NDNTHPLVEAHR++R                    RGK
Sbjct: 61  FSFGHPSIESVANRFLGQNIAPNDNTHPLVEAHRKVRINELNQQHNELLSEMEAERDRGK 120

Query: 91  --------ETQPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNE--KTAAASSS 137
                   ++   WWE P++EL+ QEL QM+  ++  HK     +NE  +   ASSS
Sbjct: 121 VLKEGTSEKSSQGWWEAPIDELSLQELKQMNVMLEEFHKNLHKTINELRRNGGASSS 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557367|ref|XP_002519714.1| mads box protein, putative [Ricinus communis] gi|223541131|gb|EEF42687.1| mads box protein, putative [Ricinus communis]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 105/171 (61%), Gaps = 42/171 (24%)

Query: 3   AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
            KKTKGRQKI+MK+IENED RLITFSKRRSGIYKKASELVTLTG+E+A LV+S +GKPFS
Sbjct: 7   GKKTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFS 66

Query: 63  FGHPSIEAPV-------------NDNTHPLVEAHRQMR--------------------RG 89
           F HPS++A               N  THPL+EAHR MR                    +G
Sbjct: 67  FAHPSMDAITNRFFGQGSADRNNNPTTHPLIEAHRLMRIEELNQQHNELLRQLEIEKEKG 126

Query: 90  KETQPR---------WWETPVNELNHQELLQMDATIDNLHKTFLARLNEKT 131
           K+ + +         WW+TP+ ELN  ELLQM+A    +  + + +L EKT
Sbjct: 127 KQLKQKHKKNNERKGWWDTPIEELNVPELLQMEAACKEIRTSLINKLKEKT 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104275|ref|XP_002313380.1| predicted protein [Populus trichocarpa] gi|222849788|gb|EEE87335.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 105/179 (58%), Gaps = 37/179 (20%)

Query: 1   MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
           M AKKT+GRQK++MKRI NED RL+TFSKRRSGIYKK SEL+TLTG+E A LVFS  GKP
Sbjct: 1   MEAKKTRGRQKVEMKRIVNEDDRLVTFSKRRSGIYKKLSELITLTGTEAAFLVFSPGGKP 60

Query: 61  FSFGHPSIEAPVN---------DNTHPLVEAHRQMRRGKETQP----------------- 94
           FSFGHPSIE  ++         D TH LVE +R+ R  + TQ                  
Sbjct: 61  FSFGHPSIENVLDRFLENPSNADGTHELVEEYRRARIEELTQKYDEMQQQLDDDKEKGSK 120

Query: 95  -----------RWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAASSSMAPPM 142
                       WW  PV ELN QEL++++   + L  T  +++ + +  ASSS AP +
Sbjct: 121 LKDKIQGNERGDWWNAPVEELNLQELIELEKKFEGLRMTLHSKMKDSSNGASSSHAPEV 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462217|ref|XP_002269756.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 99/177 (55%), Gaps = 37/177 (20%)

Query: 1   MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
           M  K+TKGRQKI+MKRI NE+ RLITFSKRRSGIYKKASEL TL G+E+ +LVFS +GK 
Sbjct: 1   MEKKQTKGRQKIEMKRIPNEEDRLITFSKRRSGIYKKASELSTLCGAEVGVLVFSPAGKA 60

Query: 61  FSFGHPSIEA----------PVNDNTHPLVEAHRQMRRGKETQPR--------------- 95
           FSFG PSIE           P NDNT  LVEAHR+ R  +  Q                 
Sbjct: 61  FSFGQPSIEKITNKVLYENPPPNDNTLNLVEAHRRFRLNELHQKYSELLSKMEVAKEQEK 120

Query: 96  ------------WWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAASSSMAP 140
                       WWE P++EL+  EL QM   I  LHK    R NE    ASSS  P
Sbjct: 121 ILRKKVPNRSKGWWEEPISELSMHELEQMAIKIQMLHKHVQHRANELWTRASSSSLP 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505973|ref|XP_004162618.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Cucumis sativus]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 96/179 (53%), Gaps = 46/179 (25%)

Query: 4   KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
           K+TKGRQKI+MK+I NED RLITFSKRRSGIYKKASEL TL G+E+ ++VFS +GKPFSF
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 64  GHPSIEAPVND-----------------NTHPLVEAHRQMR------------------- 87
            HP IE   N                  N HPLVEAHR++R                   
Sbjct: 75  AHPCIETIANKFLNGNKNNKGNNDDNNNNAHPLVEAHRRVRINELNQQHNQLLSQLDAEK 134

Query: 88  -RGKETQP---------RWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAASS 136
            +GK  +           WWETP  EL  +EL ++DA+   ++     +L ++      
Sbjct: 135 EKGKALEKLKRVRGNGRGWWETPTEELGIEELQEVDASFGEIYSNVCHQLKQRGVIGCC 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434264|ref|XP_004134916.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Cucumis sativus]

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 95/170 (55%), Gaps = 37/170 (21%)

Query: 4   KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
           K+TKGRQKI+MK+I NED RLITFSKRRSGIYKKASEL TL G+E+ ++VFS +GKPFSF
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 64  GHPSIEAPVND--------NTHPLVEAHRQMR--------------------RGKETQP- 94
            HP IE   N          T PLVEAHR++R                    +GK  +  
Sbjct: 75  AHPCIETIANKFLNAAATTTTTPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKL 134

Query: 95  --------RWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAASS 136
                    WWETP  EL  +EL ++DA+   ++     +L ++      
Sbjct: 135 KRVRGNGRGWWETPTEELGIEELQEVDASFGEIYSNVCHQLKQRGVIGCC 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429161|ref|XP_002270964.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|147772544|emb|CAN63001.1| hypothetical protein VITISV_024203 [Vitis vinifera]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 92/165 (55%), Gaps = 40/165 (24%)

Query: 1   MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
           M  K +KGRQKI++ +I  ++   +TFSKRRSG++KKASEL TL G+ +AI+VFS +GK 
Sbjct: 1   MVKKPSKGRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKV 60

Query: 61  FSFGHPSIEAPVN----------DNTHPLVEAHR-------------------------- 84
           FSFGHP +E+ V+           N   L+EAHR                          
Sbjct: 61  FSFGHPDVESIVDRFFTCNPIPEPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRGE 120

Query: 85  ---QMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKTFLAR 126
              QMRR  +TQ  WWE P+NEL+  EL Q+  +++ L K  L++
Sbjct: 121 ILSQMRRASQTQC-WWEAPINELSMPELEQLKVSMEELKKVVLSQ 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736389|emb|CBI25112.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 20/145 (13%)

Query: 1   MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
           M  K +KGRQKI++ +I  ++   +TFSKRRSG++KKASEL TL G+ +AI+VFS +GK 
Sbjct: 1   MVKKPSKGRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKV 60

Query: 61  FSFGHPSIEAPVN----------DNTHPL--VEAHR-------QMRRGKETQPRWWETPV 101
           FSFGHP +E+ V+            T  L  +EA +       QMRR  +TQ  WWE P+
Sbjct: 61  FSFGHPDVESIVDRFFTVRELNLQLTQVLNQLEAEKKRGEILSQMRRASQTQC-WWEAPI 119

Query: 102 NELNHQELLQMDATIDNLHKTFLAR 126
           NEL+  EL Q+  +++ L K  L++
Sbjct: 120 NELSMPELEQLKVSMEELKKVVLSQ 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.476	0.265	0.619	1.7e-25
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.510	0.302	0.573	3.4e-23
TAIR|locus:2102990	207	AGL57 "AGAMOUS-like 57" [Arabi	0.571	0.405	0.474	4.7e-22
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.836	0.411	0.436	6.3e-21
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.448	0.267	0.575	4.5e-20
TAIR|locus:4010713489	185	AGL64 "AGAMOUS-like 64" [Arabi	0.476	0.378	0.571	3.1e-19
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.476	0.384	0.571	5e-19
TAIR|locus:2195798	217	AT1G17310 [Arabidopsis thalian	0.857	0.580	0.375	1.4e-18
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.537	0.349	0.45	4.3e-18
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.421	0.348	0.5	1.2e-16

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 44/71 (61%), Positives = 56/71 (78%)

Query:     1 MAAKKTK-GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGK 59
             M+ KK   GRQKI M +I+ E  R +TFSKRR+G++KKASEL TL G+EI I+VFS + K
Sbjct:    55 MSKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 114

Query:    60 PFSFGHPSIEA 70
             PFSFGHPS+E+
Sbjct:   115 PFSFGHPSVES 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 43/75 (57%), Positives = 60/75 (80%)

Query:     4 KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
             + TKGRQKI+MK++ENE    +TFSKRR G++KKASEL TL+G+EI ++VFS  GK FSF
Sbjct:     3 RSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSF 62

Query:    64 GHPSIEAPVNDNTHP 78
             GHPS++  ++  ++P
Sbjct:    63 GHPSVQELIHRFSNP 77

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2102990 AGL57 "AGAMOUS-like 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 46/97 (47%), Positives = 68/97 (70%)

Query:     4 KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
             +KTKG+QKI+MK++EN   R+ITFSKR++GI+KK +ELV +   E+A L+FSQ  KP++F
Sbjct:    10 RKTKGKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTF 69

Query:    64 GHPSI------------EAPVN-DNTHPLVEAHRQMR 87
              HPS+            + P+  D+T PLVEA+++ R
Sbjct:    70 AHPSMKKVADRLKNPSRQEPLERDDTRPLVEAYKKRR 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 58/133 (43%), Positives = 89/133 (66%)

Query:     4 KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
             KK+KGRQKI+M +++NE    +TFSKRRSG++KKASEL TL G+E+AI+VFS   K FSF
Sbjct:     3 KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query:    64 GHPSIEAPVND--NTHPLV-EAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLH 120
             GHP++++ ++   N +PL    H  M+  +ET+     + V +LN+  L Q+ + ++   
Sbjct:    63 GHPNVDSVIDRFINNNPLPPHQHNNMQL-RETRRN---SIVQDLNNH-LTQVLSQLETEK 117

Query:   121 KTF--LARLNEKT 131
             K +  L ++ EKT
Sbjct:   118 KKYDELKKIREKT 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 38/66 (57%), Positives = 52/66 (78%)

Query:     3 AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
             A+K  GR+KI++ ++ NE    +TFSKRRSG++KK SEL TL  +EIAI+VFS SGK +S
Sbjct:     2 ARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYS 61

Query:    63 FGHPSI 68
             FGHP++
Sbjct:    62 FGHPNV 67

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:4010713489 AGL64 "AGAMOUS-like 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 40/70 (57%), Positives = 54/70 (77%)

Query:     1 MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
             M  KKTKG+Q+I +K+IE ++ RL+T SKRR+GIY K SEL  L G+E+A L +S SGKP
Sbjct:     1 MKPKKTKGKQRINIKKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKP 60

Query:    61 FSFGHPSIEA 70
             ++FG PS +A
Sbjct:    61 YTFGSPSFQA 70

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query:     1 MAAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKP 60
             M  KKTKG+QKI +K+IE ++GR +TFSKR +GIY K SEL  L G E+A + +S SGKP
Sbjct:     1 MNPKKTKGKQKINIKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKP 60

Query:    61 FSFGHPSIEA 70
             ++FG PS +A
Sbjct:    61 YTFGSPSFQA 70

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2195798 AT1G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 51/136 (37%), Positives = 83/136 (61%)

Query:     4 KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
             K T+GRQKI++K+IE E  R +TFSKRR G++KK++EL  LTG++IA++ FS+  + + F
Sbjct:    44 KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query:    64 GHPSIEAPVND--NTHPL-VEAHRQMRRGKETQPR-WWETPVNELNHQELLQMDATI--- 116
             GH  ++A ++      P+ +E +       E   R WWE PV  +  +EL +  A +   
Sbjct:   104 GH--VDALIDKYLRKSPVKLEGYSGDNAADEESRRPWWERPVESVPEEELEEYMAALSML 161

Query:   117 -DNLHKTFLARLNEKT 131
              +N+ K  +A  N++T
Sbjct:   162 RENIGKKIVAMGNDRT 177

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
 Identities = 36/80 (45%), Positives = 57/80 (71%)

Query:     4 KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
             KKT GR+K+++ ++  E    +TFSKR++G++KKASE  TL  ++IA++VFS +GK FSF
Sbjct:     3 KKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSF 62

Query:    64 GHPSIEAPVNDNTHPLVEAH 83
             GHP+++  + D+    V  H
Sbjct:    63 GHPNVDVLL-DHFRGCVVGH 81

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 31/62 (50%), Positives = 49/62 (79%)

Query:     8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
             GR+KI+M+++++ + + +TFSKRR G++KKASEL TL  +E+ I+VFS   KP+SFG P+
Sbjct:     2 GRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPN 61

Query:    68 IE 69
              +
Sbjct:    62 FD 63

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	7e-29
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-26
smart00432	59	smart00432, MADS, MADS domain	4e-26
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	4e-24
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	7e-14
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-08

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  100 bits (252), Expect = 7e-29
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR KI++KRIEN   R +TFSKRR+G+ KKA EL  L  +E+A+++FS SGK + F  PS
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 68 IE 69
          +E
Sbjct: 61 ME 62

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 94.1 bits (235), Expect = 1e-26
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHP 66
          GR KI++KRIEN+  R +TFSKRR+G++KKASEL  L  +E+A++VFS SGK + F   
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 93.0 bits (232), Expect = 4e-26
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHP 66
          GR+KI++KRIEN+  R +TFSKRR+G++KKA EL  L  +E+A++VFS +GK + F  P
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 88.9 bits (221), Expect = 4e-24
 Identities = 36/65 (55%), Positives = 49/65 (75%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KI++KRIEN+  R +TFSKRR G++KKASEL TL G+E+A++V+S SGK + F   S
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 68 IEAPV 72
              V
Sbjct: 61 EVEGV 65

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 61.6 bits (150), Expect = 7e-14
 Identities = 26/49 (53%), Positives = 38/49 (77%)

Query: 15 KRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
          KRIEN+  R +TFSKRR+GI+KKA EL  L  +E+A+++FS +GK + +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 6   TKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGH 65
           +   +KI +  I N+  R +TFSKR+ GI KKA EL  LTG+E+ +LV S++G   +F  
Sbjct: 80  SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT 139

Query: 66  PSIEAPVND 74
           P +E+ V  
Sbjct: 140 PKLESVVKS 148

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.97
smart00432	59	MADS MADS domain.	99.96
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.92
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.86
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.5
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	97.87

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=1.5e-33  Score=186.56  Aligned_cols=70  Identities=49%  Similarity=0.797  Sum_probs=68.4

Q ss_pred             CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCCC
Q 044532            8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTH   77 (147)
Q Consensus         8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~~   77 (147)
                      ||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|++|+|++|++++|++||.+
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~   70 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQK   70 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999999999999999999999963

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.97  E-value=3.4e-32  Score=206.79  Aligned_cols=71  Identities=54%  Similarity=0.837  Sum_probs=68.7

Q ss_pred             CCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCC--CCCCcccCCC
Q 044532            7 KGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS--IEAPVNDNTH   77 (147)
Q Consensus         7 mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~ps--v~~vi~ry~~   77 (147)
                      |||+||+|++|+|++.|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+  +++|+++|..
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~   73 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLN   73 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999999999999887  9999999963

>smart00432 MADS MADS domain

Probab=99.96  E-value=2.4e-30  Score=162.73  Aligned_cols=59  Identities=54%  Similarity=0.944  Sum_probs=57.7

Q ss_pred             CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCC
Q 044532            8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHP   66 (147)
Q Consensus         8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~p   66 (147)
                      ||+||+|++|+|+.+|++||+||+.||+|||+|||+||||+||+|||||+|+++.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999876

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.3e-30  Score=174.70  Aligned_cols=69  Identities=52%  Similarity=0.823  Sum_probs=66.1

Q ss_pred             CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCC-CCCCcccCC
Q 044532            8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS-IEAPVNDNT   76 (147)
Q Consensus         8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~ps-v~~vi~ry~   76 (147)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.+.|++++ +++++++|.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~   70 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFE   70 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHh
Confidence            799999999999999999999999999999999999999999999999999999987766 899999995

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=1.8e-29  Score=158.80  Aligned_cols=59  Identities=56%  Similarity=0.883  Sum_probs=57.0

Q ss_pred             CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCC
Q 044532            8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHP   66 (147)
Q Consensus         8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~p   66 (147)
                      ||+||+|++|+|+..|++||+||+.||+|||+|||+||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999988764

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.92  E-value=2.8e-27  Score=144.42  Aligned_cols=51  Identities=55%  Similarity=0.900  Sum_probs=46.1

Q ss_pred             EEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCC
Q 044532           15 KRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGH   65 (147)
Q Consensus        15 k~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~   65 (147)
                      |+|+|++.|++||+||+.||||||.|||+||||+||+|||||+|++|+|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            579999999999999999999999999999999999999999999998864

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.86  E-value=1.3e-22  Score=161.39  Aligned_cols=74  Identities=47%  Similarity=0.751  Sum_probs=70.8

Q ss_pred             CcccCCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccC
Q 044532            2 AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDN   75 (147)
Q Consensus         2 ~~k~~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry   75 (147)
                      .+|++.||+||+|++|+|+..|.+||||||.||||||+|||||+|.+|-|+|.|.+|-+|+|+.|.++.||..-
T Consensus        57 ~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~  130 (338)
T KOG0015|consen   57 GGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSD  130 (338)
T ss_pred             CCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccch
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999654

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.50  E-value=8e-15  Score=121.35  Aligned_cols=70  Identities=41%  Similarity=0.593  Sum_probs=66.1

Q ss_pred             CCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccC
Q 044532            6 TKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDN   75 (147)
Q Consensus         6 ~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry   75 (147)
                      +|||+||.|.+|+|+.+|.+||+||+.||+|||.||++|.|.+|.++|.|.+|.++.|+.|..+.|+.--
T Consensus        80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~~  149 (412)
T COG5068          80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKSL  149 (412)
T ss_pred             ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccccc
Confidence            5899999999999999999999999999999999999999999999999999999999999887777544

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=97.87  E-value=4.3e-05  Score=52.51  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHH----hCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044532           79 LVEAHRQMRRGKE----TQPRWWETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAA  134 (147)
Q Consensus        79 l~~~~~kL~~e~~----~~~~~~~~~l~~l~~~eL~~l~~~Le~~l~~v~~r~~~l~~~~  134 (147)
                      +..++.+|+.+++    ..+++.|++|++|+++||..|+..|+..+..|+.|+.++..+.
T Consensus        17 ~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~   76 (100)
T PF01486_consen   17 LQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQ   76 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            4445566666655    5678889999999999999999999999999999999887554

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		5e-12
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		8e-12
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		5e-11
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-10
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-10
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-10
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		3e-10
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-09
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		4e-09

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 3  AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
           KKT+GR KI+M+ I+N+  R  TFSKR++GI KKA EL TLTG+++ +LV S++G  ++
Sbjct: 6  GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 65
Query: 63 FGHPSIEAPVNDNT 76
          F    ++  +   T
Sbjct: 66 FATRKLQPMITSET 79

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 3  AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
           KKT+GR KI+M+ I+N+  R  TFSKR++GI KKA EL TLTG+++ +LV S++G  ++
Sbjct: 5  GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 64
Query: 63 FGHPSIEAPVNDNT 76
          F    ++  +   T
Sbjct: 65 FATRKLQPMITSET 78

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 7  KGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHP 66
          K R+KI++K IEN+  R +TFSKR+ GI KKA EL  LTG+++ +LV S++G  ++F  P
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75
Query: 67 SIEAPV 72
            E  V
Sbjct: 76 KFEPIV 81

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI +E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 68 IE 69
          ++
Sbjct: 61 MD 62

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI +E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 68 IE 69
          ++
Sbjct: 61 MD 62

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI +E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 68 IE 69
          ++
Sbjct: 61 MD 62

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI +E  R +TF+KR+ G+ KKA EL  L  +EIA+++F+ S K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 68 IE 69
          ++
Sbjct: 61 MD 62

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI ++  R +TF+KR+ G+ KKA EL  L   EIA+++F+ + + F +    
Sbjct: 2  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 61
Query: 68 IE 69
          ++
Sbjct: 62 MD 63

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI ++  R +TF+KR+ G+ KKA EL  L   EIA+++F+ + + F +    
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 68 IE 69
          ++
Sbjct: 61 MD 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-31
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	1e-30
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	8e-30
1egw_A	77	MADS box transcription enhancer factor 2, polypept	3e-22
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  106 bits (266), Expect = 3e-31
 Identities = 32/68 (47%), Positives = 49/68 (72%)

Query: 2  AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61
            KKT+GR KI+M+ I+N+  R  TFSKR++GI KKA EL TLTG+++ +LV S++G  +
Sbjct: 5  PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 64

Query: 62 SFGHPSIE 69
          +F    ++
Sbjct: 65 TFATRKLQ 72

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  105 bits (263), Expect = 1e-30
 Identities = 32/68 (47%), Positives = 49/68 (72%)

Query: 2  AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61
            KKT+GR KI+M+ I+N+  R  TFSKR++GI KKA EL TLTG+++ +LV S++G  +
Sbjct: 4  PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 63

Query: 62 SFGHPSIE 69
          +F    ++
Sbjct: 64 TFATRKLQ 71

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  103 bits (258), Expect = 8e-30
 Identities = 31/68 (45%), Positives = 46/68 (67%)

Query: 2  AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61
             + K R+KI++K IEN+  R +TFSKR+ GI KKA EL  LTG+++ +LV S++G  +
Sbjct: 11 NNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVY 70

Query: 62 SFGHPSIE 69
          +F  P  E
Sbjct: 71 TFSTPKFE 78

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 83.2 bits (206), Expect = 3e-22
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI +E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 68 IE 69
          ++
Sbjct: 61 MD 62

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 82.9 bits (205), Expect = 5e-22
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI +E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 68 IE 69
          ++
Sbjct: 61 MD 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 12/63 (19%)

Query: 95  RWWETPVNELNHQELLQMDATIDN---LHKTFLARLNEKTAAASSSMAPP---MYF---- 144
           +  +     +     L++   ++N   LH++ +   N      S  + PP    YF    
Sbjct: 419 KQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 145 -HH 146
            HH
Sbjct: 478 GHH 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.3e-37  Score=210.07  Aligned_cols=75  Identities=44%  Similarity=0.685  Sum_probs=72.4

Q ss_pred             CcccCCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532            2 AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT   76 (147)
Q Consensus         2 ~~k~~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~   76 (147)
                      .+|++|||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|++|+|++|+++.||++|.
T Consensus         5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A            5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999885

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=2.8e-37  Score=211.04  Aligned_cols=80  Identities=43%  Similarity=0.656  Sum_probs=72.5

Q ss_pred             cccCCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCCC-chHH
Q 044532            3 AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTH-PLVE   81 (147)
Q Consensus         3 ~k~~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~~-~l~~   81 (147)
                      ++++|||+||+|++|+|+.+|++||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|.. .||+
T Consensus        12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~lw~   91 (100)
T 1mnm_A           12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNLIQ   91 (100)
T ss_dssp             ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHHHH
T ss_pred             CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCcHHH
Confidence            678999999999999999999999999999999999999999999999999999999999999999999999963 3444


Q ss_pred             H
Q 044532           82 A   82 (147)
Q Consensus        82 ~   82 (147)
                      .
T Consensus        92 ~   92 (100)
T 1mnm_A           92 A   92 (100)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=6.6e-37  Score=210.40  Aligned_cols=75  Identities=44%  Similarity=0.685  Sum_probs=71.9

Q ss_pred             CcccCCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532            2 AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT   76 (147)
Q Consensus         2 ~~k~~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~   76 (147)
                      .+|++|||+||+|++|+|+..|++||+||+.||||||+||||||||+||||||||+|++|+|++|+++.||+++.
T Consensus         4 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~   78 (103)
T 1k6o_B            4 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   78 (103)
T ss_dssp             -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHH
T ss_pred             CCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhh
Confidence            368899999999999999999999999999999999999999999999999999999999999999999999864

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=6.8e-37  Score=200.96  Aligned_cols=69  Identities=41%  Similarity=0.658  Sum_probs=67.9

Q ss_pred             CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532            8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT   76 (147)
Q Consensus         8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~   76 (147)
                      ||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.|++||+
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~   69 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT   69 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHH
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999995

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2e-36  Score=203.51  Aligned_cols=69  Identities=41%  Similarity=0.658  Sum_probs=68.0

Q ss_pred             CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532            8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT   76 (147)
Q Consensus         8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~   76 (147)
                      ||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|++|+|++|+++.||+||+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~   69 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT   69 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHH
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	6e-29
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	5e-28
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	3e-27

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (248), Expect = 6e-29
 Identities = 31/72 (43%), Positives = 49/72 (68%)

Query: 6  TKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGH 65
          T+GR KI+M+ I+N+  R  TFSKR++GI KKA EL TLTG+++ +LV S++G  ++F  
Sbjct: 1  TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 60

Query: 66 PSIEAPVNDNTH 77
            ++  +   T 
Sbjct: 61 RKLQPMITSETG 72

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.1 bits (242), Expect = 5e-28
 Identities = 31/64 (48%), Positives = 45/64 (70%)

Query: 7  KGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHP 66
          K R+KI++K IEN+  R +TFSKR+ GI KKA EL  LTG+++ +LV S++G  ++F  P
Sbjct: 2  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 61

Query: 67 SIEA 70
            E 
Sbjct: 62 KFEP 65

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (236), Expect = 3e-27
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 8  GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
          GR+KIQ+ RI +E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 68 IE 69
          ++
Sbjct: 61 MD 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-38  Score=200.48  Aligned_cols=69  Identities=41%  Similarity=0.658  Sum_probs=67.8

Q ss_pred             CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532            8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT   76 (147)
Q Consensus         8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~   76 (147)
                      ||+||+|++|+|+..|++||+|||.||||||+|||+||||+||+|||||+|++|+|++|++++|++||.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~   69 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT   69 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999999999994

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-37  Score=200.99  Aligned_cols=71  Identities=44%  Similarity=0.689  Sum_probs=69.5

Q ss_pred             CCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532            6 TKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT   76 (147)
Q Consensus         6 ~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~   76 (147)
                      ++||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.|+++|.
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~   71 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   71 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999995

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-36  Score=198.93  Aligned_cols=70  Identities=46%  Similarity=0.706  Sum_probs=68.7

Q ss_pred             CCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532            7 KGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT   76 (147)
Q Consensus         7 mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~   76 (147)
                      .||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++|+|++|+++.|+++|.
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~   71 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQE   71 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHh
Confidence            5999999999999999999999999999999999999999999999999999999999999999999995