Citrus Sinensis ID: 044567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MYKMDGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPATGGSVSPTESSGEPFTRGGKAKRKYLRENGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQPGPQGKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLGR
Secondary Structure (PSIPRED)
ccEEcccccEEEEEEccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEEEEEEEEEEccccccccccccHHHHHHHcccccccEEEEcccccEEEEHHHHHHHcccccccEEEEEEEEEcccccccccccEEEEEEEEEEEccEEEEEEEccEEEEEEccEEEEEEEHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccccccHHcHEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccccHHHHHHHccccccEEEEcccccEEEEHHHHHHHccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEEEcccEEEEccccEEEEEEHHHHHHccc
Coil and Loop (DISEMBL)
mykmdgrggcciaryagggvydmskvdrimlrfrpiapkpatggsvsptessgepftrggkaKRKYLRENgsvnkrcnnsrkrkassedktesvvtlpllpdsparssqpgpqgkevrnsklptwlsfdksgegknqvvfsggsadrtvAMIPQAARVVGSSVTVEcvsdtwvdvgglgrtdgerkanlgrdtcpgfisdefgrvtwTNEAYNKMVGQEEGEEMVVWLVMKAPvtatltypaftCRVRLQysygkeknsltlpcdvwrmdgggfAWRLDLKAALSLGR
Flexible Loop (DISEMBL)
MYKMDGRGGCCIaryagggvydmSKVDRIMLRFRPIapkpatggsvsptessgepftrggkakrkylrengsvnkrcnnsrkrkassedktesvvtlpllpdsparssqpgpqgkevrnsKLPTWLsfdksgegkNQVVFSGGSADRTVAMIPQAARVVGSsvtvecvsdtwvdvgglgrtdgerkanlgrdtcpgfisdefgrvtWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLGR
Low Complexity Region (SEG)
MYKMDGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPATGGSVSPTESSGEPFTRGGKAKRKYLRENGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQPGPQGKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKmvgqeegeemvvWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLGR
Disordered region (IsUnstruct)
*******GGCCIARYAGGGVYDMSKVDRIMLRFRPI*****************************************************************************************************VVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAA*****
Disordered Region (DISOPRED)
*******GGCCIARYAGGGVYDMSKVDRIMLRFRPIAP**********************************************************LPLLP************************************************AMIPQAARVVGSSVTVECVSDTWVDVGG***********LGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLG*
Disordered Region (DISEMBL)
MYKMDGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPK**********************AKRKYLRENGSVNKR******************VTLPLLPDS**************RNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLGR
Disordered Region (DISPRO)
*****GRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPA*********************KRKY**ENG*********************SVVTL*LLPDS********************TWL********KNQ******SADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLGR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKMDGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPATGGSVSPTESSGEPFTRGGKAKRKYLRENGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQPGPQGKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
225456252	289	PREDICTED: uncharacterized protein LOC10	0.944	0.941	0.612	3e-85
224136061	326	predicted protein [Populus trichocarpa]	0.979	0.865	0.562	4e-81
224121918	320	predicted protein [Populus trichocarpa]	0.968	0.871	0.530	7e-73
307136109	275	hypothetical protein [Cucumis melo subsp	0.906	0.949	0.532	2e-66
449503690	277	PREDICTED: uncharacterized protein LOC10	0.909	0.945	0.520	7e-66
449469620	277	PREDICTED: uncharacterized protein LOC10	0.909	0.945	0.527	9e-66
255540323	303	conserved hypothetical protein [Ricinus	0.958	0.910	0.522	1e-63
297797329	304	hypothetical protein ARALYDRAFT_496519 [	0.937	0.888	0.523	2e-63
297819462	293	hypothetical protein ARALYDRAFT_485209 [	0.934	0.918	0.491	1e-61
15240662	291	uncharacterized protein [Arabidopsis tha	0.944	0.934	0.480	1e-59

>gi|225456252|ref|XP_002279421.1| PREDICTED: uncharacterized protein LOC100244084 [Vitis vinifera]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/302 (61%), Positives = 214/302 (70%), Gaps = 30/302 (9%)

Query: 4   MDGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPATGGSVS--PTESSGEPFTRGGK 61
           MD +GGCCIARYAGG  YDMSKVDRIMLRFRPIAPKP + GSVS   T  S E + R G+
Sbjct: 1   MDAKGGCCIARYAGGA-YDMSKVDRIMLRFRPIAPKPTSAGSVSGGSTLKSDEVYLRTGR 59

Query: 62  AKRKYLRENGSVNKRCNNSRKRKASSEDKT-----ESVVTLPLLPDSPARSSQPGPQGKE 116
            KR+Y+R+N   +KRCN  RKRKAS E+K      E+VVTLPLLP++P R     P   +
Sbjct: 60  GKRRYVRDN---SKRCN--RKRKASPEEKRDEIVGEAVVTLPLLPETPDRKDWSPPGQSD 114

Query: 117 VRNS-----KLPTWLSF-DKSGEGK---NQVVFSGGSADRTVAMIPQAARVVGSSVTVEC 167
           + ++       P WLSF + S EG    ++ V +    DRTV M PQ  R+VGS VTVEC
Sbjct: 115 LLSATKPQKNPPIWLSFANGSTEGHCGSDRAVIT----DRTVVM-PQPVRLVGSCVTVEC 169

Query: 168 VSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQ-EEGEEMVV 226
           V+DTWVD   LG TD E+  NL RDTCPGF+SD   RVTWTN AY +MVG    G EM+V
Sbjct: 170 VTDTWVDGDWLGSTDEEKINNLDRDTCPGFVSDGLNRVTWTNAAYRRMVGHVTPGPEMMV 229

Query: 227 WLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSL 286
           WLVMKA V   +T+PA TCRVRLQY  GKEKNSLTLPCDVWRMDGGGFAWRLD+KAALSL
Sbjct: 230 WLVMKARVP--VTFPAITCRVRLQYRCGKEKNSLTLPCDVWRMDGGGFAWRLDVKAALSL 287

Query: 287 GR 288
           GR
Sbjct: 288 GR 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136061|ref|XP_002322230.1| predicted protein [Populus trichocarpa] gi|222869226|gb|EEF06357.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 185/329 (56%), Positives = 214/329 (65%), Gaps = 47/329 (14%)

Query: 4   MDGRGGCCIARYAGGG-VYDMSKVDRIMLRFRPIAPKPAT---------GGSVSPTESSG 53
           MDGRGGCCIARYAGGG  YDMSKVDRIMLRFRPIAPKP+T         GG  SP  S  
Sbjct: 1   MDGRGGCCIARYAGGGGAYDMSKVDRIMLRFRPIAPKPSTAPSSAAFVSGGGSSPEMSDA 60

Query: 54  EPFTRGGKAKRKYLR-ENGSVNKRCNN----SRKRKASSEDK---TESVVTLPLLPDSPA 105
            P  R G+ KRKY    NG+  K+CN+    +RK+K   E+     +S VTLPLLP++P 
Sbjct: 61  SP--RSGRGKRKYNNTSNGNNTKKCNSGGGSNRKKKVLGEENKVVVDSFVTLPLLPEAPG 118

Query: 106 RSSQPGPQGK-EVRNSKL--------PTWLSF----DKSGEGKNQVVFSGGSADRTVAMI 152
           R   P  + K E  +  L         TWLSF         G NQ V  G  ADRTV M 
Sbjct: 119 RKDSPAKEPKCEAGSCSLTPKQVNSTSTWLSFGGNVKDHATGHNQSVGFGVPADRTVVM- 177

Query: 153 PQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAY 212
           P    +VGS VT+ECV+DTWVDV GLGRTD E++ NL +DTCPGFISD +GRVTWTNEAY
Sbjct: 178 PGVMNIVGSCVTLECVTDTWVDVDGLGRTDKEKRVNLEKDTCPGFISDGYGRVTWTNEAY 237

Query: 213 NKMVGQEEG--EEMVVWLVM--KAPVTATL-TYPAFTCRVRLQYSY-------GKEKNS- 259
            KMVGQ EG   ++ VWL +  KAPVT  L  + AFTCRVR+QY         GKEK+S 
Sbjct: 238 RKMVGQGEGGDHQVFVWLAIKEKAPVTVALGGHQAFTCRVRVQYQKYNTSEVDGKEKSSI 297

Query: 260 LTLPCDVWRMDGGGFAWRLDLKAALSLGR 288
           +T+PCDVWRMD GGFAWRLD+KAAL LGR
Sbjct: 298 ITVPCDVWRMDTGGFAWRLDVKAALCLGR 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121918|ref|XP_002318705.1| predicted protein [Populus trichocarpa] gi|222859378|gb|EEE96925.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 173/326 (53%), Positives = 205/326 (62%), Gaps = 47/326 (14%)

Query: 4   MDGRGGCCIARYAG-GGVYDMSKVDRIMLRFRPIAPKPATG--------GSVSPTESSGE 54
           MD RGGCCIARY+  GG   MSKVDRIMLRFRPIAPKPAT         G  SP  S   
Sbjct: 1   MDSRGGCCIARYSSVGGENGMSKVDRIMLRFRPIAPKPATATSGSSVSGGGSSPEMSDVS 60

Query: 55  PFTRGGKAKRKYLREN-GSVNKRCNN--SRKRKASSEDK---TESVVTLPLLPDSPARSS 108
           P  R G+ KRKY   + G+ +K+CN+  +RKRK   E+     +SVVTLPLLP++P R  
Sbjct: 61  P--RSGRGKRKYNNTSKGTNSKKCNSGGNRKRKVLGEENKAVVDSVVTLPLLPETPDRKD 118

Query: 109 QPGPQGKEVRNSKLP----------TWLSFD---KSGEGKNQVVFSGGSADRTVAMIPQA 155
                 KE++    P           WLSFD   K   G    V  G SAD+TV M P+ 
Sbjct: 119 F---GTKELKTEVFPGSVSPKPVKSKWLSFDGKVKDQAGHQNTVGFGVSADQTVVM-PRV 174

Query: 156 ARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKM 215
             +VGS VTVECV+DTWVD+ GLGRTD E+K N+ +DTCPGFISD +GRVTW NEAY KM
Sbjct: 175 VNIVGSCVTVECVTDTWVDLDGLGRTDDEKKINMEKDTCPGFISDGYGRVTWENEAYRKM 234

Query: 216 VGQEEG--EEMVVWLVMKAPVTATLT---YPAFTCRVRLQYS-------YGKEKNSL-TL 262
           VGQ EG   ++ VWL MK  V   +T   + AFTCRV++QY         GKEK S+ T+
Sbjct: 235 VGQGEGGDHQVFVWLAMKEKVPMKVTIAGHKAFTCRVKVQYQKHDTCRVNGKEKISIVTV 294

Query: 263 PCDVWRMDGGGFAWRLDLKAALSLGR 288
           PCDVWRMD G FAWRLD+K AL LGR
Sbjct: 295 PCDVWRMDSGCFAWRLDVKTALCLGR 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136109|gb|ADN33955.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/291 (53%), Positives = 188/291 (64%), Gaps = 30/291 (10%)

Query: 5   DGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPATG---GSVSPTESSGEPFTRGGK 61
           +GRGGCCIARY G   +DMSKVDRIMLRFRPIAPKPA      S   T    E   R G+
Sbjct: 4   NGRGGCCIARYVGPS-HDMSKVDRIMLRFRPIAPKPAVSSGSASADSTPEKSEGTGRTGR 62

Query: 62  AKRKYLRENGSVNKRCNNSRKRKASSEDKTES--VVTLPLLPDSPARSSQPGPQGKEVRN 119
            K++  R+ G+  KRCNN RK+  +++D   S  V TLPLLP+ P    + G      RN
Sbjct: 63  GKKRSNRDTGT--KRCNNRRKKSVANDDVLGSSVVTTLPLLPEMPDCVKREG------RN 114

Query: 120 SKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSD-TWVDVGGL 178
           +  P WLSF   G  +NQ V S          +PQA R+V SSV VE V++ TW +   L
Sbjct: 115 A--PVWLSF--GGVKENQTVVS-------AVAVPQAVRMVASSVIVESVAEITWGEGEEL 163

Query: 179 GRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATL 238
           G TD ER+ NL RDTCPGFISD  G+VTWTNEAY +MVG   G+ + VWL +K       
Sbjct: 164 GCTDEERRRNLERDTCPGFISDGGGKVTWTNEAYREMVGGTAGDAVRVWLELKERTEE-- 221

Query: 239 TYPAFTCRVRLQY--SYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLG 287
            +PAFTCRV++QY   +GKE++SLT PCD WRMDGGGFAWRLD+KAALSLG
Sbjct: 222 WWPAFTCRVKVQYRSRWGKERSSLTAPCDAWRMDGGGFAWRLDVKAALSLG 272

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503690|ref|XP_004162128.1| PREDICTED: uncharacterized protein LOC101226218 [Cucumis sativus]

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 152/292 (52%), Positives = 187/292 (64%), Gaps = 30/292 (10%)

Query: 5   DGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPATG---GSVSPTESSGEPFTRGGK 61
           +GRGGCCIARY G   +DMSKVDRIMLRFRPIAPKPA      S   T    E   R G+
Sbjct: 4   NGRGGCCIARYVGPS-HDMSKVDRIMLRFRPIAPKPAVSSGSASADSTPEKSEVTGRVGR 62

Query: 62  AKRKYLRENGSVNKRCNNSRKRKASSEDK---TESVVTLPLLPDSPARSSQPGPQGKEVR 118
            K++  R+ G+  KRCNN RK+ + + D    +  V TLPLLP+ P    + G      R
Sbjct: 63  GKKRCNRDTGT--KRCNNRRKKSSVANDAVLGSSVVTTLPLLPEMPDCVKREG------R 114

Query: 119 NSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSD-TWVDVGG 177
           N+  P WLSF+   E +  V         +   +PQA R+V SSV VE V++ TW +   
Sbjct: 115 NA--PVWLSFEGVKEDRTLV--------SSAVAVPQAVRMVASSVIVERVAEITWGEGEE 164

Query: 178 LGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTAT 237
           LG TD ER+ NL RDTCPGFISD  G+VTWTNEAY +MVG   G+ + +WL +K   T  
Sbjct: 165 LGCTDEERRRNLERDTCPGFISDGGGKVTWTNEAYREMVGGTAGDAVRIWLELKE--TTE 222

Query: 238 LTYPAFTCRVRLQY--SYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLG 287
             +PAFTCRV++QY   +GKEK+SLT PCD WRMDGGGFAWRLD+KAALSLG
Sbjct: 223 EWWPAFTCRVKVQYRSRWGKEKSSLTAPCDAWRMDGGGFAWRLDVKAALSLG 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469620|ref|XP_004152517.1| PREDICTED: uncharacterized protein LOC101213560 [Cucumis sativus]

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 154/292 (52%), Positives = 189/292 (64%), Gaps = 30/292 (10%)

Query: 5   DGRGGCCIARYAGGGVYDMSKVDRIMLRFRPIAPKPATG---GSVSPTESSGEPFTRGGK 61
           +GRGGCCIARY G   +DMSKVDRIMLRFRPIAPKPA      S   T    E   R G+
Sbjct: 4   NGRGGCCIARYVGPS-HDMSKVDRIMLRFRPIAPKPAVSSGSASADSTPEKSEVTGRVGR 62

Query: 62  AKRKYLRENGSVNKRCNNSRKRKASSEDK---TESVVTLPLLPDSPARSSQPGPQGKEVR 118
            K++  R+ G+  KRCNN RK+ +   D    +  V TLPLLP+ P    + G      R
Sbjct: 63  GKKRCNRDTGT--KRCNNRRKKSSVGNDAVLGSSVVTTLPLLPEMPDCVKREG------R 114

Query: 119 NSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSD-TWVDVGG 177
           N+  P WLSF+  G  +++ V S   A      +PQA R+V SSV VE V++ TW +   
Sbjct: 115 NA--PVWLSFE--GVKEDRTVVSSAVA------VPQAVRMVASSVIVERVAEITWGEGEE 164

Query: 178 LGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTAT 237
           LG TD ER+ NL RDTCPGFISD  G+VTWTNEAY +MVG   G+ + +WL +K   T  
Sbjct: 165 LGCTDEERRRNLERDTCPGFISDGGGKVTWTNEAYREMVGGTAGDAVRIWLELKE--TTE 222

Query: 238 LTYPAFTCRVRLQY--SYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLG 287
             +PAFTCRV++QY   +GKEK+SLT PCD WRMDGGGFAWRLD+KAALSLG
Sbjct: 223 EWWPAFTCRVKVQYRSRWGKEKSSLTAPCDAWRMDGGGFAWRLDVKAALSLG 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540323|ref|XP_002511226.1| conserved hypothetical protein [Ricinus communis] gi|223550341|gb|EEF51828.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 162/310 (52%), Positives = 192/310 (61%), Gaps = 34/310 (10%)

Query: 4   MDGRGGCCIARYAGGGV-----YDMSKVDRIMLRFRPIAPKPATGGSVSPTESSGEPFTR 58
           MDGRGGCCIARY GGG      YDMS +DRIML+FRPIAPKPA   S SP        + 
Sbjct: 1   MDGRGGCCIARYGGGGGEGSAGYDMSTIDRIMLKFRPIAPKPANTFSSSPEIDEVGSRSS 60

Query: 59  GGKAKRKYLRENGSVNKRCNNSRKRKAS---SEDKT-ESVVTLPLLPDSP-ARSSQPGPQ 113
            GK +      N + NKRC N    +     SE+K   +VVTLPLLP++P   S + G  
Sbjct: 61  RGKRRCNKTNGNNTNNKRCKNGNNNRKKKVLSEEKVGTAVVTLPLLPETPDLLSPKQGKS 120

Query: 114 GKEVRNSKLPTWLSF-DKSGEGKNQ--VVFSGGSADRTVAMIPQAARVV-GSSVTVECVS 169
           G        PTWLSF   +G G +   ++F      + V   PQ  RVV GS VTVEC++
Sbjct: 121 G--------PTWLSFGSNNGNGTHHGTMLFGMSVDHQNVVTHPQIMRVVMGSCVTVECIT 172

Query: 170 DTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGE---EMVV 226
           DTWV++ GLG TD E++ NL RDTCPGFISD FGRVTWTNEAY KM GQ E     E+VV
Sbjct: 173 DTWVNLDGLGGTDEEKRMNLERDTCPGFISDGFGRVTWTNEAYKKMAGQGEDWRRGEVVV 232

Query: 227 WLVMKAPVTATL-----TYPAFTCRVRLQYSYG----KEKNSLTLPCDVWRMDGGGFAWR 277
           WLVMK  VT           A+TC+VR+Q        KE+ S+T+PCDVWRMD GGFAWR
Sbjct: 233 WLVMKDKVTVMEAERVGNNRAWTCKVRVQNQSTCRNVKERRSITVPCDVWRMDSGGFAWR 292

Query: 278 LDLKAALSLG 287
           LD+KAALSLG
Sbjct: 293 LDVKAALSLG 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797329|ref|XP_002866549.1| hypothetical protein ARALYDRAFT_496519 [Arabidopsis lyrata subsp. lyrata] gi|297312384|gb|EFH42808.1| hypothetical protein ARALYDRAFT_496519 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 166/317 (52%), Positives = 200/317 (63%), Gaps = 47/317 (14%)

Query: 4   MDGRGGCCIARY-AGGGVYDMSKVDRIMLRFRPIAPKPAT--GGSVSP-TESSGEPFT-- 57
           MDG GGCCIARY   GG Y +SK DRIMLRFRPIAPKPA+  GGSVSP T   G P T  
Sbjct: 1   MDGSGGCCIARYGVYGGRYGLSKADRIMLRFRPIAPKPASDGGGSVSPVTGKYGSPTTTS 60

Query: 58  --------RGGKAKRKYLRENGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQ 109
                   + G+ KRKY R++   N R  N +KR  S +  T + VTL LLP++P ++  
Sbjct: 61  GGSSDVSGKSGRGKRKYQRDSSGGNSRRCNKKKRDLSGDAATTTAVTLSLLPETPDKAVF 120

Query: 110 PG----PQGKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTV 165
           P     P  K+ RN   P WLSF+    G ++++    SA+     I +   VV S VTV
Sbjct: 121 PDLNAFPVEKQKRNG--PLWLSFN----GGSEMLTPYNSAE-----ICRRTVVVSSCVTV 169

Query: 166 ECVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKM------VGQE 219
           E V+D W+D  GLG+T+ ERK NL +DTCPGFISD  GRVTWTNEAY KM      +  E
Sbjct: 170 ERVTDAWIDGYGLGKTNEERKMNLVKDTCPGFISDGAGRVTWTNEAYKKMAREDINIPME 229

Query: 220 EG--EEM-------VVWLVMKAPVTATLTYPAFTCRVRLQYS-YGKEKNSLTLPCDVWRM 269
           EG  EEM       +V LVMK      LTYPAFTCRVRLQY+   +E+ S+T+PCDVWRM
Sbjct: 230 EGVPEEMNYDNFHVIVRLVMKE--RPMLTYPAFTCRVRLQYTCQDRERGSVTVPCDVWRM 287

Query: 270 DGGGFAWRLDLKAALSL 286
           DGGGFAWRLD+KAAL L
Sbjct: 288 DGGGFAWRLDVKAALCL 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819462|ref|XP_002877614.1| hypothetical protein ARALYDRAFT_485209 [Arabidopsis lyrata subsp. lyrata] gi|297323452|gb|EFH53873.1| hypothetical protein ARALYDRAFT_485209 [Arabidopsis lyrata subsp. lyrata]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 151/307 (49%), Positives = 176/307 (57%), Gaps = 38/307 (12%)

Query: 4   MDGRGGCCIARYA-GGGVYDMSKVDRIMLRFRPIAPKPATGGSVSPTESSGEP------- 55
           MDGRGGCCIARYA G G YD+SK DRIMLRFRPIAPKPA+ G V+P  S           
Sbjct: 1   MDGRGGCCIARYAIGSGPYDLSKADRIMLRFRPIAPKPASPGGVTPVSSGDSGGGSSDVS 60

Query: 56  FTRGGKAKRK--YLRENGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQPGPQ 113
           F   G+ KRK    +ENG   KRC   R           + VTL LLPD P         
Sbjct: 61  FRSAGRRKRKCHQQKENGGNAKRCTRRRTSDKPVVHGGANAVTLSLLPDKPIDLKA---- 116

Query: 114 GKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWV 173
             E +  + P WLSF   GE             RTV        V+ S +TVE V+D W+
Sbjct: 117 AVEKQKRQGPLWLSFSDGGEMLTPAYQKPEVVRRTV--------VISSCMTVERVTDAWI 168

Query: 174 DVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQ----EEGE------- 222
           D  GLGR+D ERK NL RDTCPGFISD  GRVTWTN+AY KM  +    EEG        
Sbjct: 169 DGYGLGRSDEERKMNLVRDTCPGFISDGSGRVTWTNDAYRKMARENIPVEEGTPEIISGN 228

Query: 223 --EMVVWLVMKAPVTATLTYPAFTCRVRLQYS-YGKEKNSLTLPCDVWRMDGGGFAWRLD 279
              + V LVM+      L+ P FTCRV+LQY+   +E+ S+T+PCDVWRMDGGGFAWRLD
Sbjct: 229 SFHVFVRLVMRE--RPMLSSPGFTCRVKLQYTCQNRERGSVTVPCDVWRMDGGGFAWRLD 286

Query: 280 LKAALSL 286
           +KAAL L
Sbjct: 287 VKAALCL 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240662|ref|NP_199847.1| uncharacterized protein [Arabidopsis thaliana] gi|13878117|gb|AAK44136.1|AF370321_1 unknown protein [Arabidopsis thaliana] gi|9758918|dbj|BAB09455.1| unnamed protein product [Arabidopsis thaliana] gi|17104789|gb|AAL34283.1| unknown protein [Arabidopsis thaliana] gi|21536570|gb|AAM60902.1| unknown [Arabidopsis thaliana] gi|332008549|gb|AED95932.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/304 (48%), Positives = 181/304 (59%), Gaps = 32/304 (10%)

Query: 4   MDGRGGCCIARYAG-GGVYDMSKVDRIMLRFRPIAPKPATGGS-VSPTESSGEPFT---- 57
           M+ RGGCCIARY G GG  DMSKVDRIMLR+RPIAP+P +GGS  SPTE +G   T    
Sbjct: 1   MNFRGGCCIARYGGSGGGNDMSKVDRIMLRYRPIAPRPDSGGSPASPTEKNGSVITNVSS 60

Query: 58  RGGKAKRKYLREN-----GSVNKRCNNSRKRKASSEDKT---ESVVTLPLLPDSPARSSQ 109
           R  + KRKY +EN     GSVN   N+ R+R   +++ +     +VTLPLLP++P +   
Sbjct: 61  RSRRGKRKYSKENNSSSTGSVNSNGNSKRQRNDETKNGSGGGREIVTLPLLPETPEKKDS 120

Query: 110 PGPQGKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVS 169
           P              WLSF+            G S +R          VV S +TVECV+
Sbjct: 121 PLKAKAAPELGAAALWLSFN-----------DGASYNRRYQTELMTETVVSSLLTVECVT 169

Query: 170 DTWVD-VGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMV---GQEEGEEMV 225
           +  ++    LG TD ERK NL RDTCPGFISD  GRV WTN +Y ++V     E+  +M 
Sbjct: 170 ERLMEGEYELGCTDEERKMNLERDTCPGFISDGLGRVIWTNGSYRELVVGKDHEQCSKMS 229

Query: 226 VWLVMKAPVTATLTYPAFTCRVRLQYS-YGKEKNSLTLPCDVWRMDGGGFAWRLDLKAAL 284
           VWLVMK      +TY  FTCR+RLQY+   KE +S+T  CDVWRM  GGFAWRLD+ AAL
Sbjct: 230 VWLVMKEK--PLVTYRTFTCRMRLQYTCRDKEVSSITSFCDVWRMSDGGFAWRLDVDAAL 287

Query: 285 SLGR 288
            LGR
Sbjct: 288 CLGR 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2158544	302	AT5G63350 "AT5G63350" [Arabido	0.934	0.890	0.503	6e-64
TAIR|locus:2114455	294	AT3G48510 "AT3G48510" [Arabido	0.940	0.921	0.470	8.4e-58
TAIR|locus:2177517	291	AT5G50360 "AT5G50360" [Arabido	0.944	0.934	0.467	1.6e-56
TAIR|locus:2086488	282	AT3G27250 "AT3G27250" [Arabido	0.909	0.929	0.366	1.5e-37
TAIR|locus:2164461	272	AT5G40800 "AT5G40800" [Arabido	0.857	0.908	0.384	6.5e-35
TAIR|locus:2164451	303	AT5G40790 "AT5G40790" [Arabido	0.711	0.676	0.350	2.6e-24

TAIR|locus:2158544 AT5G63350 "AT5G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 159/316 (50%), Positives = 190/316 (60%)

Query:     4 MDGRGGCCIARYAG-GGVYDMSKVDRIMLRFRPIAPKPAT-GGSVSPTESSGEPFT---- 57
             MDGRGGCCIARY G GG Y +SK DRIMLRFRPIAPKPA+ GGSVS T  SG   T    
Sbjct:     1 MDGRGGCCIARYGGYGGRYGLSKADRIMLRFRPIAPKPASDGGSVSLTGKSGSTTTTSGG 60

Query:    58 ------RGGKAKRKYLRE-NGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQP 110
                   + G+ KRKY ++ +G  ++RCN  +KR  S +  T + VTL LLP++P +   P
Sbjct:    61 SSDLSGKSGRGKRKYQKDCSGGNSRRCNK-KKRDLSGDTATTTAVTLSLLPETPEKRVFP 119

Query:   111 G----PQGKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVE 166
                  P  K+ RN   P WLSF+  GE    ++    +A+     I +   VV S VTVE
Sbjct:   120 DLNAFPVEKQKRNG--PLWLSFNGGGE----ILTPYKTAE-----ISRRTVVVSSCVTVE 168

Query:   167 CVSDTWVDVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKXXX--------- 217
              V+D W+D  GLG T+ ERK NL  DTCPGFISD  GRVTWTNEAY K            
Sbjct:   169 RVTDAWIDGYGLGETNQERKMNLVEDTCPGFISDGVGRVTWTNEAYKKMAREDINIPMEE 228

Query:   218 ------XXXXXXXXXWLVMKAPVTATLTYPAFTCRVRLQYS-YGKEKNSLTLPCDVWRMD 270
                             LVMK      LTYPAFTCRVRLQY+   +E+ S+T+PCDVWRMD
Sbjct:   229 GVPEDISYDNFHVNVRLVMKE--RPMLTYPAFTCRVRLQYTCQDRERGSVTVPCDVWRMD 286

Query:   271 GGGFAWRLDLKAALSL 286
             GGGFAWRLD+KAAL L
Sbjct:   287 GGGFAWRLDVKAALCL 302

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2114455 AT3G48510 "AT3G48510" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 144/306 (47%), Positives = 177/306 (57%)

Query:     4 MDGRGGCCIARYA-GGGVYDMSKVDRIMLRFRPIAPKPATGGSVSPTES--SGE-----P 55
             MDGRGGCCIARYA G G YD+SK DRIMLRFRPIAPKPA+ G V+P  S  SG       
Sbjct:     1 MDGRGGCCIARYAIGSGPYDLSKADRIMLRFRPIAPKPASPGGVNPVSSGDSGGGSSDVS 60

Query:    56 FTRGGKAKRK--YLRENGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQPGPQ 113
             F    + KRK   L+ENG   KRC   +         + + VTL LLP+ P         
Sbjct:    61 FRSASRRKRKCHQLKENGGNAKRCTRRKTSDKPVVHGSANAVTLSLLPEKPI--DLKAAV 118

Query:   114 GKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWV 173
              K+ R    P WLSF K G G     +      +T  ++ Q   V+ S +TVE V+D W+
Sbjct:   119 EKQKRQG--PLWLSF-KDGGGMLTPAY------QTPEIV-QRTVVISSCMTVERVTDAWI 168

Query:   174 DVGGLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKXXXXXX---------XXXX 224
             D  GLGR+D ERK NL RDTCPGFISD  GRVTWTN+AY K                   
Sbjct:   169 DGYGLGRSDEERKMNLVRDTCPGFISDGSGRVTWTNDAYRKMARDIIPVEEGAPEITSGD 228

Query:   225 XXWLVMKAPVTAT--LTYPAFTCRVRLQYS-YGKEKNSLTLPCDVWRMD-GGGFAWRLDL 280
                ++++  +     LT P FTCR++LQY+   +E+ S+T+PCDVWRMD GGGFAWRLD+
Sbjct:   229 SFHVIVRLVMRERPMLTSPGFTCRMKLQYTCQNRERGSVTVPCDVWRMDVGGGFAWRLDV 288

Query:   281 KAALSL 286
             KAAL L
Sbjct:   289 KAALCL 294

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177517 AT5G50360 "AT5G50360" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 142/304 (46%), Positives = 174/304 (57%)

Query:     4 MDGRGGCCIARYAG-GGVYDMSKVDRIMLRFRPIAPKPATGGS-VSPTESSGEPFT---- 57
             M+ RGGCCIARY G GG  DMSKVDRIMLR+RPIAP+P +GGS  SPTE +G   T    
Sbjct:     1 MNFRGGCCIARYGGSGGGNDMSKVDRIMLRYRPIAPRPDSGGSPASPTEKNGSVITNVSS 60

Query:    58 RGGKAKRKYLREN-----GSVNKRCNNSRKRKASSEDKT---ESVVTLPLLPDSPARSSQ 109
             R  + KRKY +EN     GSVN   N+ R+R   +++ +     +VTLPLLP++P +   
Sbjct:    61 RSRRGKRKYSKENNSSSTGSVNSNGNSKRQRNDETKNGSGGGREIVTLPLLPETPEKKDS 120

Query:   110 PGPQGKEVRNSKLPTWLSFDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVS 169
             P              WLSF+            G S +R          VV S +TVECV+
Sbjct:   121 PLKAKAAPELGAAALWLSFN-----------DGASYNRRYQTELMTETVVSSLLTVECVT 169

Query:   170 DTWVDVG-GLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKXXXXXXX---XXXX 225
             +  ++    LG TD ERK NL RDTCPGFISD  GRV WTN +Y +              
Sbjct:   170 ERLMEGEYELGCTDEERKMNLERDTCPGFISDGLGRVIWTNGSYRELVVGKDHEQCSKMS 229

Query:   226 XWLVMKAPVTATLTYPAFTCRVRLQYSY-GKEKNSLTLPCDVWRMDGGGFAWRLDLKAAL 284
              WLVMK      +TY  FTCR+RLQY+   KE +S+T  CDVWRM  GGFAWRLD+ AAL
Sbjct:   230 VWLVMKEK--PLVTYRTFTCRMRLQYTCRDKEVSSITSFCDVWRMSDGGFAWRLDVDAAL 287

Query:   285 SLGR 288
              LGR
Sbjct:   288 CLGR 291

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2086488 AT3G27250 "AT3G27250" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 103/281 (36%), Positives = 146/281 (51%)

Query:    14 RYAGGGVYDMSKVDRIMLRFRPIAPKPATGGSVSPTESSGEP-FTRGGKAKRKYLRENGS 72
             RYAG    D   VD +MLR+RPIAPKP TG      +++    +    + KRKY+R + +
Sbjct:    11 RYAGKA-QDKVSVDALMLRYRPIAPKPTTGQPCGVADNNNNSSYGMSKRTKRKYVRVSKN 69

Query:    73 VNKRCNNSRKRKASSEDKTES-VVTLPLLPDSPARSSQPGPQGKEVRNSKLPTWLSFDKS 131
              NK     + R   S+D+ ++ VVTL LLP+    S +  P  ++  +  + + +  +++
Sbjct:    70 -NKGTCRGKSRSDLSDDREQTDVVTLQLLPEKSDISGEYSPLDQDSLDPSVKSIIG-EET 127

Query:   132 GEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGR 191
              E     +F+G     T  M      V   SVT  C     +    +G TD E   NLG+
Sbjct:   128 QETNTWGMFNGSV---TAEM---ETWVTVESVTSVCEGS--LSSHAVGITDVEIVDNLGK 179

Query:   192 DTCPGFISDEFGRVTWTNEAYNKXXXXXXXXXXXX-----WLVMKAPVTAT-LTYPAFTC 245
             DTCP F+SD   RV W NEAY +                 WLV +    A    Y AFTC
Sbjct:   180 DTCPAFVSDGSNRVVWVNEAYRRNVSGDDSTASVSPEVVVWLVAEEATAAMHCNYQAFTC 239

Query:   246 RVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSL 286
             RVR+QY++ + K + T+PCDVW+M+ GGFAWRLD  AAL+L
Sbjct:   240 RVRMQYTWKETKYTKTVPCDVWKMEFGGFAWRLDTTAALTL 280

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164461 AT5G40800 "AT5G40800" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 107/278 (38%), Positives = 147/278 (52%)

Query:    18 GGVYDMSKVDRIMLRFRPIAPKPATGGSVSPTESSGEPFTRGGKAKRKYLRENGSVNKRC 77
             G   D + VD +ML++RPIAPKP T G     ++S    TR  + KRKY+R + +    C
Sbjct:    15 GKAQDKTSVDTLMLKYRPIAPKPTTTGQPLVGDTSS---TR--RTKRKYVRVSKNNKATC 69

Query:    78 ----NNSRKRKASSEDKTESVVTLPLLPDSPARSSQPGPQGKEVRNSKLPT--WLSFDKS 131
                 N  R      E+  E +VTL LLP+   RS+   P   +  N+  PT   ++ D++
Sbjct:    70 RSKTNGFRSSSTDPENGREDIVTLQLLPE---RST---PLSLD-HNNLDPTVETINGDET 122

Query:   132 GEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGR 191
                   + F+GG  D  +  +P     V + VTVE V+   V    +G TD E    L +
Sbjct:   123 CNTDTWLKFNGG--DDALQQVP-----VETWVTVESVNSGLVS-HAVGLTDEELTYALDK 174

Query:   192 DTCPGFISDEFGRVTWTNEAYNKXXXXXXXXXXXX--WLVMKAPVTATLT-YPAFTCRVR 248
             DTCPGFISD   RV   NEAY +              WLV+    TAT   Y  FTC+VR
Sbjct:   175 DTCPGFISDGSNRVVMVNEAYRRIVTGDGGFGREVIVWLVVDQ--TATFCDYRTFTCKVR 232

Query:   249 LQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSL 286
             ++Y++ + K + TLPCDVW+M+ GGFAWRLD  AAL+L
Sbjct:   233 MEYTWRETKYTKTLPCDVWKMEFGGFAWRLDTTAALTL 270

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164451 AT5G40790 "AT5G40790" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 82/234 (35%), Positives = 110/234 (47%)

Query:    68 RENGSVNKRCNNSRKRKASSEDKTESVVTLPLLPDSPARSSQPGPQGKEVRNSKLPTWLS 127
             ++NG           +K   +D+T+ +VTL LLP+        G +  E   S L     
Sbjct:    84 KKNGCDRGNIKTDLDKKIDGDDRTD-IVTLQLLPEKDRDIGNNGDKAGEFC-SDLS---D 138

Query:   128 FDKSGEGKNQVVFSGGSADRTVAMIPQAARVVGSSVTVECVSDTWVDVGG------LGRT 181
              D      N ++    S DR         +VV S +TVECVSDT  D+G       LGR 
Sbjct:   139 MDPKKSLYNSIIGLSSSFDR---------KVVESWLTVECVSDTCTDLGWYHILEQLGRM 189

Query:   182 DG--ERKAN-LGRDTCPGFISDEFGRVTWTNEAYNKXXXXXXXXXXXXWLVMKAPVTATL 238
             D   ER    L  DTCP  +SD   RV W N AY +            WLV+   +   +
Sbjct:   190 DQAEERVMRMLEVDTCPWLVSDGSNRVCWVNRAYRRMMGAPDVDVIRVWLVVAMDLMEEI 249

Query:   239 T-----YPAFTCRVRLQYSYGKEKNSLTLPCDVWRMDGGGFAWRLDLKAALSLG 287
                   Y A TCRVR++Y     +  +T+PCDVWR+  GGFAWRLD+++AL LG
Sbjct:   250 ACMVELYGAVTCRVRVRYEPSTWRK-MTVPCDVWRIRSGGFAWRLDVESALRLG 302

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PF00989	113	PAS: PAS fold; InterPro: IPR013767 PAS domains are	91.34
PF13188	64	PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.	90.18
PF08448	110	PAS_4: PAS fold; InterPro: IPR013656 The PAS fold	84.42
PF13426	104	PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_	83.22
TIGR00229	124	sensory_box PAS domain S-box. The PAS domain was p	80.39

>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []

Probab=91.34  E-value=0.26  Score=36.13  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             HHHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567          183 GERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       183 eEv~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      |..+.-|+.-.-|.||.|..|+|.++|.|+.+|.|-
T Consensus         1 e~~~~i~~~~~~~i~~~d~~g~I~~~N~a~~~l~g~   36 (113)
T PF00989_consen    1 ERYRAILENSPDGIFVIDEDGRILYVNQAAEELLGY   36 (113)
T ss_dssp             HHHHHHHHCSSSEEEEEETTSBEEEECHHHHHHHSS
T ss_pred             CHHHHHHhcCCceEEEEeCcCeEEEECHHHHHHHcc
Confidence            455667778888999999999999999999999986

PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....

>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A

Probab=90.18  E-value=0.48  Score=33.18  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=25.9

Q ss_pred             hhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          186 KANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       186 ~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      +.-++.-..+-+|.| .++|.++|.|+.+|.|-+
T Consensus         4 ~~l~~~~~~~i~i~d-~~~i~~~N~~~~~l~g~~   36 (64)
T PF13188_consen    4 RSLFDNSPDGILIID-GGRIIYVNPAFEELFGYS   36 (64)
T ss_dssp             HHHHCCSSSEEEEEE-TSBEEEE-HHHHHHHCS-
T ss_pred             HHHHHcCccceEEEE-CCChHHhhHHHHHHhCCC
Confidence            444566677889999 889999999999999943

>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []

Probab=84.42  E-value=0.84  Score=33.21  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             CCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567          193 TCPGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       193 t~P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      ..+.+|-|..++|.|+|.||.++.|.
T Consensus         5 p~~i~v~D~~~~i~~~N~~~~~~~~~   30 (110)
T PF08448_consen    5 PDGIFVIDPDGRIVYANQAAAELFGV   30 (110)
T ss_dssp             SSEEEEEETTSBEEEE-HHHHHHHTS
T ss_pred             CceeEEECCCCEEEEEHHHHHHHhCC
Confidence            45778999999999999999998875

The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.

>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A

Probab=83.22  E-value=1.2  Score=31.98  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=21.2

Q ss_pred             CeEeeCCCCcEEEehHHHHHhhCC
Q 044567          195 PGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       195 P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      +-||.|..|+|.++|.|+.+|.|-
T Consensus         3 ~i~i~d~~g~i~~~N~~~~~~~g~   26 (104)
T PF13426_consen    3 GIFILDPDGRILYVNPAFERLFGY   26 (104)
T ss_dssp             EEEEEETTSBEEEE-HHHHHHHTS
T ss_pred             EEEEECCcCcEEehhHHHHHHHCc
Confidence            568999999999999999999985

...

>TIGR00229 sensory_box PAS domain S-box

Probab=80.39  E-value=3  Score=27.39  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=24.9

Q ss_pred             CCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          190 GRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       190 E~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      +.-..+.++.|..+++.++|.+|.++.|.+
T Consensus        10 ~~~~~~~~~~d~~~~i~~~n~~~~~~~g~~   39 (124)
T TIGR00229        10 ESSPDAIIVIDLEGNILYVNPAFEEIFGYS   39 (124)
T ss_pred             hhCCceEEEEcCCCcEEEEchHHHHHhCCC
Confidence            333446789999999999999999999864

The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
4hi4_A	121	Aerotaxis transducer AER2; PAS domain, diatomic GA	93.82
2gj3_A	120	Nitrogen fixation regulatory protein; PAS domain,	90.16
4eet_B	115	Phototropin-2; LOV, blue light photoreceptor, sign	89.87
2w0n_A	118	Sensor protein DCUS; signal transduction, two-comp	88.96
3a0s_A	96	Sensor protein; PAS-fold, kinase, phosphoprotein,	88.53
3fg8_A	118	Uncharacterized protein RHA05790; PAS domain, stru	88.31
3lyx_A	124	Sensory BOX/ggdef domain protein; structural genom	87.43
3fc7_A	125	HTR-like protein, sensor protein; APC87712.1, HTR-	86.84
3luq_A	114	Sensor protein; PAS, histidine, kinase, PSI, MCSG,	86.65
3b33_A	115	Sensor protein; structural genomics, PAS domain, n	85.78
2l0w_A	138	Potassium voltage-gated channel, subfamily H (EAG	85.64
3t50_A	128	Blue-light-activated histidine kinase; PAS superfa	84.82
2r78_A	117	Sensor protein; sensory box sensor histidine kinas	84.35
3vol_A	233	Aerotaxis transducer AER2; heme, oxygen sensor pro	83.79
3olo_A	118	Two-component sensor histidine kinase; structural	83.06
2vv6_A	119	FIXL, sensor protein FIXL; signaling protein, tran	82.71
3k3c_A	158	Protein RV1364C/MT1410; sensor, PAS, signal transd	82.59
1n9l_A	109	PHOT-LOV1, putative blue light receptor; phototrop	82.25
2pr5_A	132	Blue-light photoreceptor; light-oxygen-voltage, LO	81.93
3bwl_A	126	Sensor protein; structural genomics, APC87707.1, P	81.91
1byw_A	110	Protein (human ERG potassium channel); PAS domain,	80.79
1d06_A	130	Nitrogen fixation regulatory protein FIXL; oxygen	80.73

>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}

Probab=93.82  E-value=0.044  Score=40.31  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             HHHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhC
Q 044567          183 GERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVG  217 (288)
Q Consensus       183 eEv~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVg  217 (288)
                      ...+.-|+.=.-+-+|.|..|||.|+|.|+.+|.|
T Consensus         5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg   39 (121)
T 4hi4_A            5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLG   39 (121)
T ss_dssp             HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHH
T ss_pred             HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHH
Confidence            45666778878899999999999999999999986

>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}

Probab=90.16  E-value=0.25  Score=35.47  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=25.5

Q ss_pred             cCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      +|.-.-.-+|+|..|++.++|.||.+|.|-.
T Consensus        11 ~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~   41 (120)
T 2gj3_A           11 VEHAPIAISITDLKANILYANRAFRTITGYG   41 (120)
T ss_dssp             HHHCSSEEEEECTTCBEEEECHHHHHHHCCC
T ss_pred             HHhCCCeEEEECCCCCEEeehHHHHHHHCcC
Confidence            4444446789999999999999999999963

>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*

Probab=89.87  E-value=0.32  Score=32.96  Aligned_cols=29  Identities=7%  Similarity=0.030  Sum_probs=24.3

Q ss_pred             CCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567          190 GRDTCPGFISDE---FGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       190 E~Dt~P~fISDg---~nRV~wvN~AYkrMVgq  218 (288)
                      |.-..+-+|.|.   .|+|.++|.||.+|.|-
T Consensus         4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~   35 (115)
T 4eet_B            4 EFIEKNFVITDPRLPDNPIIFASDGFLELTEY   35 (115)
T ss_dssp             -CCCCSEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred             ccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCc
Confidence            444456789999   99999999999999985

>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}

Probab=88.96  E-value=0.2  Score=34.42  Aligned_cols=36  Identities=25%  Similarity=0.203  Sum_probs=30.0

Q ss_pred             hHHHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhC
Q 044567          182 DGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVG  217 (288)
Q Consensus       182 deEv~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVg  217 (288)
                      .++.+.-|+.-.-+-++.|..|+|.++|.|+.+|.|
T Consensus        14 ~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g   49 (118)
T 2w0n_A           14 FEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLN   49 (118)
T ss_dssp             HHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHC
T ss_pred             HHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhC
Confidence            344555566667788999999999999999999999

>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*

Probab=88.53  E-value=0.29  Score=31.48  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=22.0

Q ss_pred             CeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          195 PGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       195 P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      +-++.|..|+|.++|.|+.+|.|-+
T Consensus         4 ~i~~~d~~g~i~~~N~~~~~l~g~~   28 (96)
T 3a0s_A            4 AIITLSKDGRITEWNKKAEQLFGLK   28 (96)
T ss_dssp             EEEEEETTSBEEEECHHHHHHHCCC
T ss_pred             eEEEEcCCCCEeehhHHHHHHhCCC
Confidence            4578999999999999999999863

>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}

Probab=88.31  E-value=0.42  Score=34.67  Aligned_cols=31  Identities=16%  Similarity=0.034  Sum_probs=26.0

Q ss_pred             cCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      |+.-.-+-||.|..|||.++|.||.+|.|-+
T Consensus        18 l~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~   48 (118)
T 3fg8_A           18 YFQGGLGFMALDEDLRIIYVNSGCLRHVRRS   48 (118)
T ss_dssp             SSCTTCEEEEECTTCBEEEECHHHHHHHTCC
T ss_pred             HhhCCceEEEECCCCeEEEECHHHHHHhCCC
Confidence            4444567799999999999999999999863

>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}

Probab=87.43  E-value=0.71  Score=30.84  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=29.6

Q ss_pred             HHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          184 ERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       184 Ev~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      ..+.-++.-..+-++.|..|+|.++|.|+.++.|.+
T Consensus         8 ~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~   43 (124)
T 3lyx_A            8 QRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYS   43 (124)
T ss_dssp             HHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCC
T ss_pred             HHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCC
Confidence            445556666778899999999999999999999863

>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}

Probab=86.84  E-value=0.5  Score=33.00  Aligned_cols=34  Identities=9%  Similarity=0.022  Sum_probs=25.4

Q ss_pred             hhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          186 KANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       186 ~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      +.-++.-.-+-++.|..|+|.++|.|+.+|.|-+
T Consensus        22 ~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~   55 (125)
T 3fc7_A           22 ESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGAD   55 (125)
T ss_dssp             ----CCSCCEEEEEETTSBEEEECHHHHHHHTSC
T ss_pred             HHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCC
Confidence            3344455556788999999999999999999863

>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}

Probab=86.65  E-value=0.72  Score=31.23  Aligned_cols=35  Identities=9%  Similarity=-0.035  Sum_probs=27.8

Q ss_pred             hhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCCC
Q 044567          186 KANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEE  220 (288)
Q Consensus       186 ~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~e  220 (288)
                      +.-++.-..+.++.|..|++.++|.||.+|.|-+.
T Consensus         6 ~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~   40 (114)
T 3luq_A            6 RLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGD   40 (114)
T ss_dssp             HHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCS
T ss_pred             HHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCH
Confidence            33445555677889999999999999999998643

>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.78  E-value=0.45  Score=33.38  Aligned_cols=30  Identities=17%  Similarity=0.153  Sum_probs=24.9

Q ss_pred             CCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          190 GRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       190 E~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      +.-.-+-++.|..|+|.++|.|+.+|.|.+
T Consensus        14 ~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~   43 (115)
T 3b33_A           14 NNMVTATLILDDGLAIRYANPAAELLFSQS   43 (115)
T ss_dssp             HHCSSEEEEECTTCBEEEECHHHHHHTTSC
T ss_pred             hhcCceEEEECCCCcEEEECHHHHHHhCCC
Confidence            333446789999999999999999999864

>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A

Probab=85.64  E-value=0.71  Score=31.74  Aligned_cols=36  Identities=11%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             HHHhhhcCCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567          183 GERKANLGRDTCPGFISDE---FGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       183 eEv~~~LE~Dt~P~fISDg---~nRV~wvN~AYkrMVgq  218 (288)
                      +.+...++.-.-+.++.|.   .|+|.++|.|+.+|.|-
T Consensus        19 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~   57 (138)
T 2l0w_A           19 DTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGY   57 (138)
T ss_dssp             HHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSC
T ss_pred             HHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCC
Confidence            4566667777778899999   99999999999999885

>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}

Probab=84.82  E-value=0.98  Score=31.72  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=25.1

Q ss_pred             cCCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567          189 LGRDTCPGFISDE---FGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       189 LE~Dt~P~fISDg---~nRV~wvN~AYkrMVgq  218 (288)
                      |+.-..+.+|.|.   .|+|.++|.||.+|.|-
T Consensus         3 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~   35 (128)
T 3t50_A            3 SEFTLMPMLITNPHLPDNPIVFANPAFLKLTGY   35 (128)
T ss_dssp             CCCCSSCEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred             cccCcccEEEecCCCCCCcEEEEcHHHHHHhCc
Confidence            3444567899999   89999999999999985

>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}

Probab=84.35  E-value=0.75  Score=33.27  Aligned_cols=30  Identities=23%  Similarity=0.138  Sum_probs=24.7

Q ss_pred             cCCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567          189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      +|.-.-.-||.|..|++.++|.|+.+|.|-
T Consensus        17 ~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy   46 (117)
T 2r78_A           17 FEHAIDGIFIMDAEGHYLDVNPAICSAIGY   46 (117)
T ss_dssp             HHHCSSEEEEECTTSBEEEECHHHHHHHCC
T ss_pred             HhcCCceEEEECCCCCEEEecHHHHHHHCc
Confidence            444444568899999999999999999985

>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}

Probab=83.79  E-value=0.75  Score=38.91  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             hHHHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhC
Q 044567          182 DGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVG  217 (288)
Q Consensus       182 deEv~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVg  217 (288)
                      -+..+.-|+.-..+-+|.|..|+|.++|.||.+|.+
T Consensus        21 ~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~   56 (233)
T 3vol_A           21 MARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLG   56 (233)
T ss_dssp             HHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHH
Confidence            345566688878899999999999999999999984

>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}

Probab=83.06  E-value=0.96  Score=31.03  Aligned_cols=30  Identities=13%  Similarity=0.163  Sum_probs=24.9

Q ss_pred             cCCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567          189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      ++.-.-+-|+.|..|++..+|.|+.+|.|-
T Consensus        19 ~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~   48 (118)
T 3olo_A           19 INNAVEASFCLGDNWQFLYVNDATCRMTEY   48 (118)
T ss_dssp             HHHCSSEEEEECTTSBEEEECHHHHHHHCC
T ss_pred             HhcCCceEEEECCCCcEEEEHHHHHHHHCC
Confidence            344444678899999999999999999986

>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*

Probab=82.71  E-value=0.76  Score=32.73  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             eEeeCCCCcEEEehHHHHHhhCC
Q 044567          196 GFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       196 ~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      -++.|..|+|..+|.|+.+|.|-
T Consensus         6 i~~~d~~g~i~~~N~a~~~l~G~   28 (119)
T 2vv6_A            6 MIVIDGHGIIQLFSTAAERLFGW   28 (119)
T ss_dssp             EEEEETTSBEEEECHHHHHHHCC
T ss_pred             EEEECCCCeEEEEhHHHHHHhCC
Confidence            47899999999999999999985

>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A

Probab=82.59  E-value=0.99  Score=33.43  Aligned_cols=37  Identities=11%  Similarity=-0.091  Sum_probs=29.5

Q ss_pred             HHHhhhcCCCCCCeEeeC-CCCcEEEehHHHHHhhCCC
Q 044567          183 GERKANLGRDTCPGFISD-EFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       183 eEv~~~LE~Dt~P~fISD-g~nRV~wvN~AYkrMVgq~  219 (288)
                      +..+.-++.-..+.+|.| ..|++.++|.||.+|.|.+
T Consensus        17 ~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~   54 (158)
T 3k3c_A           17 EDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL   54 (158)
T ss_dssp             HHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC
T ss_pred             HHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc
Confidence            334445555667788898 9999999999999999875

>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*

Probab=82.25  E-value=0.8  Score=32.78  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             eEeeCC---CCcEEEehHHHHHhhCC
Q 044567          196 GFISDE---FGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       196 ~fISDg---~nRV~wvN~AYkrMVgq  218 (288)
                      -+|+|.   .|++.++|.||.+|.|-
T Consensus         6 i~i~d~~~~~g~i~~~N~a~~~l~Gy   31 (109)
T 1n9l_A            6 FVVADATLPDCPLVYASEGFYAMTGY   31 (109)
T ss_dssp             EEEEETTSTTCCEEEECHHHHHHHCC
T ss_pred             EEEEcCCCCCCeEEEEchHHHHHHCc
Confidence            478884   69999999999999884

>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*

Probab=81.93  E-value=1.2  Score=32.38  Aligned_cols=28  Identities=18%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             CCCCCeEeeCCCC---cEEEehHHHHHhhCC
Q 044567          191 RDTCPGFISDEFG---RVTWTNEAYNKMVGQ  218 (288)
Q Consensus       191 ~Dt~P~fISDg~n---RV~wvN~AYkrMVgq  218 (288)
                      .-.-.-+|.|..|   ++.++|.||.+|.|-
T Consensus         7 ~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~   37 (132)
T 2pr5_A            7 HVRVGVVITDPALEDNPIVYVNQGFVQMTGY   37 (132)
T ss_dssp             CCCCEEEEECTTSTTCCEEEECHHHHHHHSC
T ss_pred             cCCCcEEEEeCCCCCCcEEEECHHHHHHhCc
Confidence            3334567889866   999999999999985

>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}

Probab=81.91  E-value=1.1  Score=31.71  Aligned_cols=31  Identities=13%  Similarity=0.095  Sum_probs=24.8

Q ss_pred             cCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567          189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQE  219 (288)
Q Consensus       189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~  219 (288)
                      +|.-.-.-++.|..|++.++|.|+.+|.|-.
T Consensus        23 ~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~   53 (126)
T 3bwl_A           23 FENSPDMIDVLDADGTICEVNQRFCAELGYD   53 (126)
T ss_dssp             HHHCSSEEEEECTTCBEEEECHHHHHHHTCC
T ss_pred             HhhCCcEEEEEcCCCCEEEEcHHHHHHhCCC
Confidence            3333445688999999999999999999963

>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6

Probab=80.79  E-value=1.1  Score=29.18  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             eEeeCC---CCcEEEehHHHHHhhCC
Q 044567          196 GFISDE---FGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       196 ~fISDg---~nRV~wvN~AYkrMVgq  218 (288)
                      -+|.|.   .|+|.++|.|+.+|.|-
T Consensus         4 i~i~d~~~~~g~i~~~N~~~~~~~g~   29 (110)
T 1byw_A            4 FIIANARVENCAVIYCNDGFCELCGY   29 (110)
T ss_dssp             EEEEETTSSSCBEEEECHHHHHHHTC
T ss_pred             EEEEeccCCCCcEEEECHHHHHHhCC
Confidence            467786   49999999999999985

>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*

Probab=80.73  E-value=1.2  Score=32.32  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=23.7

Q ss_pred             CCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567          190 GRDTCPGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       190 E~Dt~P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      +.-.-.-++.|..|+|.++|.|+.+|.|-
T Consensus        23 ~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy   51 (130)
T 1d06_A           23 DTVPDATVVSATDGTIVSFNAAAVRQFGY   51 (130)
T ss_dssp             TTCSSEEEEEETTSBEEEECHHHHHHHCC
T ss_pred             hhCcCeEEEECCCCeEEEEcHHHHHHHCC
Confidence            33333457899999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1v9ya_	113	Direct oxygen sensor protein, DOS {Escherichia col	89.03
d1n9la_	109	Putative blue light receptor, phot-lov1 domain {Gr	88.01
d1xj3a1	106	Histidine kinase FixL heme domain {Bradyrhizobium	86.06
d1jnua_	104	Photoreceptor phy3 flavin-binding domain, lov2 {Ma	85.92
d1ew0a_	130	Histidine kinase FixL heme domain {Rhizobium melil	82.12

>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Direct oxygen sensor protein, DOS
species: Escherichia coli [TaxId: 562]

Probab=89.03  E-value=0.16  Score=34.68  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             hhcCCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567          187 ANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       187 ~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      .-||.-.-+.||.|..|+|.++|.|+.+|.|-
T Consensus         5 ~~~e~~~d~i~~~d~~g~i~~~N~~~~~l~Gy   36 (113)
T d1v9ya_           5 PALEQNMMGAVLINENDEVMFFNPAAEKLWGY   36 (113)
T ss_dssp             HHHHTCSSEEEEECTTSBEEEECHHHHHHHSC
T ss_pred             HHHHcCcCcEEEEeCCCCEEEEchhHhhhhcc
Confidence            34566667889999999999999999999984

>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Putative blue light receptor, phot-lov1 domain
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=88.01  E-value=0.13  Score=36.36  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             eEeeCC---CCcEEEehHHHHHhhCC
Q 044567          196 GFISDE---FGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       196 ~fISDg---~nRV~wvN~AYkrMVgq  218 (288)
                      -||+|.   .|||.|+|.||.+|.|-
T Consensus         6 ~vi~Da~~pdg~Ii~vN~a~~~~~Gy   31 (109)
T d1n9la_           6 FVVADATLPDCPLVYASEGFYAMTGY   31 (109)
T ss_dssp             EEEEETTSTTCCEEEECHHHHHHHCC
T ss_pred             EEEEeCCCCCCeEEEEcHHHHHHHCc
Confidence            478994   69999999999999985

>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Histidine kinase FixL heme domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=86.06  E-value=0.21  Score=33.49  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             eEeeCCCCcEEEehHHHHHhhCC
Q 044567          196 GFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       196 ~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      -|+.|..|+|..+|.|+-+|.|-
T Consensus         3 i~~~D~~G~I~~~N~a~~~l~Gy   25 (106)
T d1xj3a1           3 MIVIDGHGIIQLFSTAAERLFGW   25 (106)
T ss_dssp             EEEEETTSBEEEECHHHHHHHCC
T ss_pred             EEEECCCCcEEEEcHHHHHHhhh
Confidence            48999999999999999999984

>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Photoreceptor phy3 flavin-binding domain, lov2
species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=85.92  E-value=0.24  Score=34.20  Aligned_cols=22  Identities=9%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             EeeCC---CCcEEEehHHHHHhhCC
Q 044567          197 FISDE---FGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       197 fISDg---~nRV~wvN~AYkrMVgq  218 (288)
                      +|+|.   .||+.|+|.||.+|.|-
T Consensus         4 vi~d~~~pd~~I~y~N~a~~~~~G~   28 (104)
T d1jnua_           4 VITDPRLPDNPIIFASDRFLELTEY   28 (104)
T ss_dssp             EEECTTSTTCCEEEECHHHHHHHTC
T ss_pred             EEEcCCCCCCEEEEEcHHHHHHHCc
Confidence            68884   69999999999999886

>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Heme-binding PAS domain
domain: Histidine kinase FixL heme domain
species: Rhizobium meliloti [TaxId: 382]

Probab=82.12  E-value=0.43  Score=33.65  Aligned_cols=31  Identities=19%  Similarity=0.081  Sum_probs=26.7

Q ss_pred             hcCCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567          188 NLGRDTCPGFISDEFGRVTWTNEAYNKMVGQ  218 (288)
Q Consensus       188 ~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq  218 (288)
                      -+|.-.-+-||.|..|+|..+|.|+.+|.|-
T Consensus        21 i~~~~~~~i~~~d~~g~i~~~N~~~~~l~Gy   51 (130)
T d1ew0a_          21 ILDTVPDATVVSATDGTIVSFNAAAVRQFGY   51 (130)
T ss_dssp             HHTTCSSEEEEEETTSBEEEECHHHHHHHCC
T ss_pred             HHHcCCCeEEEEeCCccEEEEHHHHHHhhcC
Confidence            3555566789999999999999999999996