Citrus Sinensis ID: 044585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIVFKEL
Secondary Structure (PSIPRED)
cccEEcccccEEEEEcccccccccccccccccccEEEEcccccccccccccccccccccccEEccccccccEEEccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccEEcccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccEEEEEccccccEcccccccccccEEEEEEEcccccEccccccccccHHHHcHHEcccccHHEEEHcccHcHHHHHccccccHHHccccEEEEEcccHcHHHcccHHHHHHHHHHcEEEEcccHcHHHEEEcccccccccccccccccccEEEEcccHHHHHHcccccccEEcccccEEEEccccccEEEccccccccccccccccccccccEEEEccccccccccccccccccEEEEcccHcHHHHcccccccccccccccEEEEcccHHHHHccccccccHcccEEEEcccHHHHHHccHHHHHHHHHHcEEEEccHHHHHHHHccccccccccEEEcccc
Coil and Loop (DISEMBL)
nytlefpsleqvsmthcpnmktfsrgisstpklYVVQVTereegehhwegnklnSTIQKCYEVMIGFRdiehlqlshfprlreiwhgqavpvsffNNLRQLAvddctnmssaiptNLLRCLnnlrclevrncDLIEEVLHLeelnakeehigprfprlnrlrlidlpklkrfCNFTGNIIelselenltiencpdmetFISNSVVHvttnnkepqkltsEENFLLAHqvqplfdekltfpqlkeLKLSRLHKVQHLWKENDESNKAFANLKSLEIFEcsklqklvpaswhlenleaLKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIqspvaeeakdciVFKEL
Flexible Loop (DISEMBL)
nytlefpsleqVSMTHCPNMKtfsrgisstpkLYVVQVTEreegehhwegnklnstIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLeelnakeehigprfprlnrLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLtlstsrslIILQSMTIADCKRIEEIIqspvaeeakdcivfkel
Low Complexity Region (SEG)
NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTnllrclnnlrclevrncDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHrlinlltlstsrsliilQSMTIADCKRIEEIIQSPVAEEAKDCIVFKEL
Disordered region (IsUnstruct)
**************************I*STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTT***********ENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIVF***
Disordered Region (DISOPRED)
NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL*****HIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFIS****************TSEENFLLA*QVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII**********CIVFKEL
Disordered Region (DISEMBL)
NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVT********WEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIVFKEL
Disordered Region (DISPRO)
NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIV***L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIVFKEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
P23799	630	Putative adenylate cyclas	N/A	no	0.803	0.449	0.244	1e-07
P26337	630	Putative adenylate cyclas	N/A	no	0.849	0.474	0.232	1e-06

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 52/335 (15%)

Query: 6   FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQ-----VTEREEGEHHWEGNKLNSTIQKC 60
             +LE +S+ +C N+      I + P+L  +      VT+++    H +G      I  C
Sbjct: 205 LKTLEALSLDNCINITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKMLDISSC 264

Query: 61  YEV-----MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPT 115
           +E+     + G R +E L LS    + +        +  F+NLR+L +  C  + SA+  
Sbjct: 265 HEITDLTAIGGVRSLEKLSLSGCWNVTKGLE----ELCKFSNLRELDISGCLVLGSAV-- 318

Query: 116 NLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF 175
            +L+ L NL+ L V NC       + ++LN  E     R   L +L L     +      
Sbjct: 319 -VLKNLINLKVLSVSNCK------NFKDLNGLE-----RLVNLEKLNLSGCHGVSSL--- 363

Query: 176 TGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDE 235
            G +  LS L+ L I  C  +  F          NN E   L   ++F     ++ L   
Sbjct: 364 -GFVANLSNLKELDISGCESLVCFDGLQ----DLNNLEVLYLRDVKSFTNVGAIKNL--- 415

Query: 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLE 295
                +++EL LS   ++  L        +    L+ L +  C ++    P  W L +L 
Sbjct: 416 ----SKMRELDLSGCERITSL-----SGLETLKGLEELSLEGCGEIMSFDPI-WSLYHLR 465

Query: 296 ALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKR 330
            L VS+C    NL  LS  + L  L+ M +  C++
Sbjct: 466 VLYVSECG---NLEDLSGLQCLTGLEEMYLHGCRK 497

May be involved in the postranscriptional regulation of genes in VSG expression sites.
Trypanosoma brucei brucei (taxid: 5702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 141/353 (39%), Gaps = 54/353 (15%)

Query: 6   FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQ-----VTEREEGEHHWEGNKLNSTIQKC 60
             +LE +S+  C N+      I + P+L  +      VT+++    H +G         C
Sbjct: 205 LKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTDKDLRCIHPDGKLKVLRYSSC 264

Query: 61  YEV-----MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPT 115
           +E+     + G R +E L LS    + +        +  F+NLR+L +  C  + SA+  
Sbjct: 265 HEITDLTAIGGMRSLEKLSLSGCWNVTKGLE----ELCKFSNLRELDISGCLVLGSAV-- 318

Query: 116 NLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF 175
            +L+ L NL+ L V NC       + ++LN  E     R   L++L L     +      
Sbjct: 319 -VLKNLINLKVLSVSNCK------NFKDLNGLE-----RLVNLDKLNLSGCHGVSSL--- 363

Query: 176 TGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDE 235
            G +  LS L+ L I  C  +  F          NN E   L   ++F     ++ L   
Sbjct: 364 -GFVANLSNLKELDISGCESLVCFDGLQ----DLNNLEVLYLRDVKSFTNVGAIKNL--- 415

Query: 236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLE 295
                +++EL LS   ++  L        +    L+ L +  C ++    P  W L +L 
Sbjct: 416 ----SKMRELDLSGCERITSL-----SGLETLKGLEELSLEGCGEIMSFDPI-WSLHHLR 465

Query: 296 ALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIV 348
            L VS+C    NL  LS    +  L+ + +  C++       P+      C+V
Sbjct: 466 VLYVSECG---NLEDLSGLEGITGLEELYLHGCRKCTNF--GPIWNLRNVCVV 513

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.573	0.085	0.412	1e-35
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.920	0.131	0.309	3e-35
358344895	906	Resistance protein RGC2, partial [Medica	0.744	0.289	0.320	2e-25
358344903	2248	Cc-nbs-lrr resistance protein [Medicago	0.835	0.130	0.293	4e-25
255563252	1603	Disease resistance protein RPS5, putativ	0.661	0.145	0.346	6e-24
357439633	1039	Rpp4 candidate [Medicago truncatula] gi|	0.767	0.259	0.321	2e-23
224103171	305	predicted protein [Populus trichocarpa]	0.542	0.626	0.359	1e-22
358344919	1995	NBS/LRR resistance protein-like protein	0.772	0.136	0.302	1e-22
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.803	0.215	0.279	4e-22
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.752	0.197	0.314	8e-22

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 1    NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC 60
            NY   FPSL+ + +  CP M+ FS+GISSTPKL  V   +    E  W GN LN+T+Q+ 
Sbjct: 1593 NYNFIFPSLKGMVVEQCPKMRIFSQGISSTPKLQGVYWKKDSMNEKCWHGN-LNATLQQL 1651

Query: 61   YEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRC 120
            Y  M+G   I  L+LS FP+L++ WHGQ +P + F+NL  L VD+C  +S+AIP+N+L+ 
Sbjct: 1652 YTKMVGCNGIWSLKLSDFPQLKDRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKF 1710

Query: 121  LNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFT-GNI 179
            +NNL+ L V+NC+ +E V  LE L+A+  +     P L  L L+DLP+L+   N     I
Sbjct: 1711 MNNLKYLHVKNCESLEGVFDLEGLSAQAGY-DRLLPNLQELHLVDLPELRHIWNRDLPGI 1769

Query: 180  IELSELENLTIENCPDMETFISNSVV 205
            ++   L+ L + NC  +    S S+ 
Sbjct: 1770 LDFRNLKRLKVHNCSSLRNIFSPSMA 1795

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 190/398 (47%), Gaps = 74/398 (18%)

Query: 1    NYTLEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC 60
            N  ++FPSLE++ +T CP M+ FS GI + PKL  V +T+  EG+       LN+T Q+ 
Sbjct: 1503 NCRVKFPSLEELIVTACPRMEFFSHGIITAPKLEKVSLTK--EGDKWRSVGDLNTTTQQL 1560

Query: 61   YEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRC 120
            Y  M+G   ++HLQLS FP L E WH Q +P  FF NL+ L VD+C+  SS++P+NLL  
Sbjct: 1561 YREMVGLNGVQHLQLSEFPTLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPF 1619

Query: 121  LNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNII 180
            LN L  LEVRNCD + +V   E  N  +       P L +  LIDLP+L+   +   +  
Sbjct: 1620 LNELEVLEVRNCDSLAKVFDFEWSN--DYGYAGHLPNLKKFHLIDLPRLRHIWDDISS-- 1675

Query: 181  ELSELENLT---IENCPDMETFISNSVV--------HVTTNNKEPQKLTSEENFLLAHQV 229
            E+S  +NLT   I NC  +  +I N ++         V   N    +    E   LA + 
Sbjct: 1676 EISGFKNLTVLNIHNCSSLR-YIFNPIICMGLVQLQEVEVRNCALVQAIIREG--LAKEE 1732

Query: 230  QPLFDEKLTFPQLKELKLSRLHKVQHLWKEND---------------------------E 262
             P    ++ FP LK + L  L  + + +  +                            E
Sbjct: 1733 AP---NEIIFPLLKSISLESLPSLINFFSGSGIVRCPSLKEITIVNCPATFTCTLLRESE 1789

Query: 263  SNKA---------FANLKSLEIFECSKLQKLVPASWH---------LENLEALKVSKCHR 304
            SN           F+ LK L++F  +     +   WH         +++L +L V  C  
Sbjct: 1790 SNATDEIIETKVEFSELKILKLFSIN-----IEKIWHAHQLEMYASIQHLASLTVDGCGH 1844

Query: 305  LINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEE 342
            L + L+ S  ++L+ L+ + + +C+ +EE+I +   EE
Sbjct: 1845 LKHALSSSMVQTLVHLKKLEVCNCRMMEEVIATEGFEE 1882

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula]

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 28/290 (9%)

Query: 70  IEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEV 129
           ++ L+LS+ P+L+ +W         F NL  ++V DC ++ S  P ++ R +  L+ L V
Sbjct: 113 LKKLKLSNLPKLKHVWKEDPHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLV 172

Query: 130 RNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG-NIIELSELENL 188
            NC  IEE++  EE    +E +   FP L  + L +L KLK F  F G + ++   L+ +
Sbjct: 173 SNCG-IEEIVVKEE--GPDEMVKFVFPHLTSIELDNLTKLKAF--FVGVHSLQCKSLKTI 227

Query: 189 TIENCPDMETFISNSVVHVTTNNKEPQKLTSE----ENFLLAHQVQPLFDEKL-----TF 239
            +  CP +E F             EP KL       E  +  +Q   +F+E+L     + 
Sbjct: 228 KLFKCPRIELF-----------KAEPLKLQESSKNVEQNISTYQPLFVFEEELLTSVEST 276

Query: 240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKV 299
           PQ +EL+L +LHK++++ KE  + +     L+S+++ +CS L KLVP+S     +  L+V
Sbjct: 277 PQFRELELLQLHKLKYICKEGFQMDPFLHFLESIDVCQCSSLIKLVPSSVTFSYMTYLEV 336

Query: 300 SKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIVF 349
           + C+ LINL+T ST++SL+ L +M I  C  +E+I+     E+  + IVF
Sbjct: 337 TNCNGLINLITHSTAKSLVKLTTMKIEMCNWLEDIVNG--KEDETNEIVF 384

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344903|ref|XP_003636525.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502460|gb|AES83663.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 174/361 (48%), Gaps = 67/361 (18%)

Query: 4    LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV 63
            ++FPSLE+V +  CP MK FS G +STP L  V++ E +  E HW+GN LN+TI   +E 
Sbjct: 1469 MKFPSLEKVIVGECPRMKIFSAGHTSTPILQKVKIAEND-SEWHWKGN-LNNTIYNMFED 1526

Query: 64   MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAI-PTNLLRCLN 122
             +GF   +HLQLS +P L+E+W+GQ    + F +L+ L V  C  +S  +   NLL  L 
Sbjct: 1527 KVGFVSFKHLQLSEYPELKELWYGQH-EHNTFRSLKYLVVHKCDFLSDVLFQPNLLEVLM 1585

Query: 123  NLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCN-------- 174
            NL  L+V +C+ +E V  L++  AK E +     +L +L++ +LPKLK            
Sbjct: 1586 NLEELDVEDCNSLEAVFDLKDEFAK-EIVVRNSTQLKKLKISNLPKLKHVWKEDAFPSLD 1644

Query: 175  -------------FTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEE 221
                         +  N   +  L +L ++NC  ++    +++V    N K         
Sbjct: 1645 TLKLSSLLNLNKVWDDNHQSMCNLTSLIVDNCVGLKYLFPSTLVKSFMNLKH-------- 1696

Query: 222  NFLLAHQVQPLFDEKLTFPQ----LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFE 277
               L     P+ +E +   +    LKE+ L +L K+  + K+ D       NLKS+    
Sbjct: 1697 ---LEISNCPMMEEIIAKKERNNALKEVHLLKLEKI--ILKDMD-------NLKSI---- 1740

Query: 278  CSKLQKLVPASWH--LENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII 335
                       WH   E L+ L+V+ C +++ +   S   +   L+ + + +C  +EEI 
Sbjct: 1741 -----------WHHQFETLKMLEVNNCKKIVVVFPSSMQNTYNELEKLEVTNCALVEEIF 1789

Query: 336  Q 336
            +
Sbjct: 1790 E 1790

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 135/245 (55%), Gaps = 12/245 (4%)

Query: 64   MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNN 123
            M  F ++E+L+LS      +I   Q   +S  +NL  L V+ C N+     ++L++ L  
Sbjct: 944  MFCFPNLENLELSSIA-CEKICDDQLSAIS--SNLMSLIVERCWNLKYLFTSSLVKNLLL 1000

Query: 124  LRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELS 183
            L+ LEV +C  +E ++  EEL  +E +    FP L+ L+L +LP + RFC+  G  +E S
Sbjct: 1001 LKRLEVFDCMSVEGIIVAEELVEEERNRKKLFPELDFLKLKNLPHITRFCD--GYPVEFS 1058

Query: 184  ELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLK 243
             L  L IENCP +  F+S S       ++E + + SE+N     + QPLF+EK+ FP L+
Sbjct: 1059 SLRKLLIENCPALNMFVSKSPSADMIESREAKGMNSEKNH--HTETQPLFNEKVAFPSLE 1116

Query: 244  ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLEN---LEALKVS 300
            E++LS +  ++ +W  N     +F  LK + I  C KL+ + P S+ LE    LE L +S
Sbjct: 1117 EIELSYIDNLRRIW-HNQLDAGSFCKLKIMRINGCKKLRTIFP-SYLLERFQCLEKLSLS 1174

Query: 301  KCHRL 305
             C+ L
Sbjct: 1175 DCYAL 1179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula]

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 155/305 (50%), Gaps = 35/305 (11%)

Query: 4   LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV 63
           + FP LE V +  CP M+  S G+++TP L +VQ+ E  E E+HWEG+ LN +++K ++ 
Sbjct: 460 ITFPLLEVVVVKECPRMELLSLGVTNTPNLQIVQIEESNE-ENHWEGD-LNRSVKKLFDD 517

Query: 64  MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAI-PTNLLRCLN 122
            + FR+ ++L LS    L +IW+G+ +  + F NL+ L V+ C  +S  + P+N+++ L+
Sbjct: 518 KVAFREFKYLALSDHSELEDIWYGR-LDHNVFCNLKHLVVERCDFLSQVLFPSNVVQVLH 576

Query: 123 NLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIEL 182
            L  LEVRNCD +E V  + +L  KE  I  R  RL  L L  LP LK   N   +  E+
Sbjct: 577 GLEELEVRNCDSLEVVFDVRDLKTKEILIKQR-TRLKSLTLSGLPNLKHIWN--EDPYEI 633

Query: 183 SELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQL 242
              ENL    C           V V+      Q L+    F L   ++ L        ++
Sbjct: 634 VNFENL----CK----------VKVSMC----QSLSYIFPFSLCQDLRLL--------EI 667

Query: 243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLE--NLEALKVS 300
            E+   R+  +  + + + ESN  F  L +L +   S L+   P  + LE  +L+ L V 
Sbjct: 668 LEVVSCRVEVIIAMEERSMESNFCFPQLNTLVLRLLSNLKSFYPRKYTLECPSLKILNVY 727

Query: 301 KCHRL 305
           +C  L
Sbjct: 728 RCQAL 732

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103171|ref|XP_002334081.1| predicted protein [Populus trichocarpa] gi|222869602|gb|EEF06733.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 116/214 (54%), Gaps = 23/214 (10%)

Query: 81  LREIWHGQ-----AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI 135
           + +IWHGQ       PV    NL  L VDDC ++      ++++ L  L+ L VR C  +
Sbjct: 100 VEKIWHGQLHRENTFPV---QNLMTLVVDDCHSLKYLFSPSMVKSLVLLKHLTVRYCKSM 156

Query: 136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPD 195
           EE++ +E L   E      F +L  + L DLP+L RFC   G +IE   L+ L I +CP+
Sbjct: 157 EEIISVEGLEEGELMSEMCFDKLEDVELSDLPRLTRFC--AGTLIECKVLKQLRICSCPE 214

Query: 196 METFIS-----NSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL 250
            +TFIS     N  VHV     EP ++ S E+    + VQPLFDEK+ FP L E+K+S +
Sbjct: 215 FKTFISCPDSVNMTVHV-----EPGEVHSRESD--HNAVQPLFDEKVAFPSLAEIKISHI 267

Query: 251 HKVQHLWKENDESNKAFANLKSLEIFECSKLQKL 284
             ++ +W  N  +  +F  L+S+ I  C +L ++
Sbjct: 268 ENLEKMW-HNQLAEDSFCQLRSVTISSCKRLVRV 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344919|ref|XP_003636533.1| NBS/LRR resistance protein-like protein [Medicago truncatula] gi|355502468|gb|AES83671.1| NBS/LRR resistance protein-like protein [Medicago truncatula]

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 149/281 (53%), Gaps = 9/281 (3%)

Query: 4    LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV 63
            ++FP LE+V +  CP MK FS G +STP L  V++ E    E  W+GN LN+TI   +E 
Sbjct: 1411 MKFPLLEEVIVRECPQMKIFSEGNTSTPILQKVKIAEN-NSEWLWKGN-LNNTIYNMFEN 1468

Query: 64   MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAI-PTNLLRCLN 122
             + F  +++L LS +P L+++W+GQ +  + F +L+ L V+ C  +S  + P+N+++ L+
Sbjct: 1469 KVAFGKLKYLALSDYPELKDVWYGQ-LHCNVFCSLKHLVVERCDFLSHVLFPSNVMKVLH 1527

Query: 123  NLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGN-IIE 181
             L  LEV++CD +E V  ++ + ++E  I     +L RL L  LPKLK   +   + II 
Sbjct: 1528 TLEELEVKDCDSLEAVFDVKGMKSQEILIKEN-TQLKRLTLSGLPKLKHIWHEDPHEIIS 1586

Query: 182  LSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQ 241
              +L  + +  C  +      S+  V   + E  ++ S     +        +    FPQ
Sbjct: 1587 FGKLCKVDVSMCQSLLYIFPYSLC-VDLGHLEMLEIESCGVKEIVAMETGSMEINFNFPQ 1645

Query: 242  LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQ 282
            LK + L RL  ++  ++   + +    +LK+L ++ C  L+
Sbjct: 1646 LKIMALRRLTNLKSFYQ--GKHSLDCPSLKTLNVYRCEALR 1684

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 21/304 (6%)

Query: 4    LEFPSLEQVSMTHCPNMKTFSRGI--SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY 61
            +EF  L ++++   P   +F   +  SS  +     +      +    GN+L +++   +
Sbjct: 878  IEFTQLRRLTLQCLPQFTSFHSNVEESSDSQRRQKLLASEARSKEIVAGNELGTSMS-LF 936

Query: 62   EVMIGFRDIEHLQLSHFPRLREIWHGQ-AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRC 120
               I F ++E L+LS   ++ +IWH Q +V      NL  +AV++C N++  + ++++  
Sbjct: 937  NTKILFPNLEDLKLSSI-KVEKIWHDQPSVQSPCVKNLASIAVENCRNLNYLLTSSMVES 995

Query: 121  LNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNII 180
            L  L+ LE+ NC  +EE++  E++   +      FP+L  L LI LPKL RFC  T N++
Sbjct: 996  LAQLKKLEICNCKSMEEIVVPEDIGEGKMMSKMLFPKLLILSLIRLPKLTRFC--TSNLL 1053

Query: 181  ELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFP 240
            E   L+ LT+ NCP+++ FIS           +P    S            LFD+K+ FP
Sbjct: 1054 ECHSLKVLTVGNCPELKEFISIPSSADVPAMSKPDNTKS-----------ALFDDKVAFP 1102

Query: 241  QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASW--HLENLEALK 298
             L+E  ++ +  ++ +W     S+ +F  LK+L +     L  + P+S      NLE L 
Sbjct: 1103 DLEEFLIAEMDNLKVIWHSELHSD-SFCKLKTLHVVLVKNLLNIFPSSMLRRFHNLENLT 1161

Query: 299  VSKC 302
            +  C
Sbjct: 1162 IGAC 1165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 18/283 (6%)

Query: 83   EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLE 142
            E+W+GQ + +SF  NLR L + +C ++    P++L + L NL  L+V NC+ +EE+  LE
Sbjct: 920  EVWNGQ-LSLSF-GNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLKVENCNQLEEIFDLE 977

Query: 143  ELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSE----------LENLTIEN 192
             LN    H+G   P+L  + L     L+        IIE+ +          L  L+I  
Sbjct: 978  GLNVDGGHVG-LLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFPVESFCRLRVLSICE 1036

Query: 193  CPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTF---PQLKELKLSR 249
              D+   I +S++    +  E   + S  +     Q++ L DE+  F    +L+EL+L+ 
Sbjct: 1037 YRDILVVIPSSMLQ-RLHTLEKLTVRSCGSVKEVVQLEGLVDEENHFRALARLRELELND 1095

Query: 250  LHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLL 309
            L ++++LWKEN      F NL+ L+I++C  L  LVP+S    NL +L +S C  LINLL
Sbjct: 1096 LPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHNLASLDISYCCSLINLL 1155

Query: 310  TLSTSRSLIILQSMTIADCKRIEEIIQSPVAEEAKDCIVFKEL 352
                ++SL+  +   I     ++E++ +   E A D I F +L
Sbjct: 1156 PPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKL 1197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-07

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 73/272 (26%), Positives = 120/272 (44%), Gaps = 35/272 (12%)

Query: 55  STIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIP 114
           S ++K ++ +     + ++ L     L+EI       +S   NL  L + DC+++   +P
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEI-----PDLSMATNLETLKLSDCSSLVE-LP 674

Query: 115 TNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCN 174
           +++ + LN L  L++  C+      +LE L       G     L RL L    +LK F +
Sbjct: 675 SSI-QYLNKLEDLDMSRCE------NLEILP-----TGINLKSLYRLNLSGCSRLKSFPD 722

Query: 175 FTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFD 234
            + NI  L +L+   IE  P        S + +   N +   L   ++  L  +VQPL  
Sbjct: 723 ISTNISWL-DLDETAIEEFP--------SNLRL--ENLDELILCEMKSEKLWERVQPLTP 771

Query: 235 -EKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLEN 293
              +  P L  L LS +  +  L      S +    L+ LEI  C  L+ L P   +LE+
Sbjct: 772 LMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETL-PTGINLES 826

Query: 294 LEALKVSKCHRLINLLTLSTSRSLIILQSMTI 325
           LE+L +S C RL     +ST+ S + L    I
Sbjct: 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.67
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.58
KOG4341	483	consensus F-box protein containing LRR [General fu	99.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.51
KOG4341	483	consensus F-box protein containing LRR [General fu	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.29
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.27
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.21
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.19
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.18
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.18
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.88
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.73
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.47
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.44
PRK15386	426	type III secretion protein GogB; Provisional	98.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.18
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.67
PLN03150	623	hypothetical protein; Provisional	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.54
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.53
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.45
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.93
PLN03150	623	hypothetical protein; Provisional	96.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.81
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.39
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	85.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.79
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.99
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.33
smart00370	26	LRR Leucine-rich repeats, outliers.	81.33

>PLN03210 Resistant to P

Probab=99.86  E-value=3e-21  Score=199.80  Aligned_cols=242  Identities=18%  Similarity=0.271  Sum_probs=145.8

Q ss_pred             eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeec-
Q 044585           64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLE-  142 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-  142 (352)
                      +..+++|+.|++++|..+..++...    +.+++|++|++++|.++...+. ..  .+++|+.|.+++|..++.++... 
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si----~~L~~L~~L~L~~c~~L~~Lp~-~i--~l~sL~~L~Lsgc~~L~~~p~~~~  725 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSI----QYLNKLEDLDMSRCENLEILPT-GI--NLKSLYRLNLSGCSRLKSFPDIST  725 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhh----hccCCCCEEeCCCCCCcCccCC-cC--CCCCCCEEeCCCCCCccccccccC
Confidence            3455666666666666555544443    4566666666666655555432 21  45666666666665554432110 


Q ss_pred             ---cccccccccC-----CCCcccCeeccccccccccccccC-----CceeeccCcceEeeccCCCCcccccchhhhccC
Q 044585          143 ---ELNAKEEHIG-----PRFPRLNRLRLIDLPKLKRFCNFT-----GNIIELSELENLTIENCPDMETFISNSVVHVTT  209 (352)
Q Consensus       143 ---~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  209 (352)
                         .+......+.     ..+++|+.|.+.++.... ++...     .....+++|+.|.+++|+.+..+ |.++. +++
T Consensus       726 nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~-~L~  802 (1153)
T PLN03210        726 NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQ-NLH  802 (1153)
T ss_pred             CcCeeecCCCccccccccccccccccccccccchhh-ccccccccchhhhhccccchheeCCCCCCcccc-Chhhh-CCC
Confidence               0000000000     013344444443322110 00000     01123467888888887766665 65543 778


Q ss_pred             CCCCCC--CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCC
Q 044585          210 NNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA  287 (352)
Q Consensus       210 ~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  287 (352)
                      +|+.|+  .|+.++.++..          ..+++|+.|++++|..++.++       ...++|+.|+++++ .++.+|..
T Consensus       803 ~L~~L~Ls~C~~L~~LP~~----------~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n-~i~~iP~s  864 (1153)
T PLN03210        803 KLEHLEIENCINLETLPTG----------INLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRT-GIEEVPWW  864 (1153)
T ss_pred             CCCEEECCCCCCcCeeCCC----------CCccccCEEECCCCCcccccc-------ccccccCEeECCCC-CCccChHH
Confidence            888887  67777655433          246788888888887777665       23467888888775 67778877


Q ss_pred             ccCCCCCcEEeecCCccccccccccccCccccccEEEEecccccceec
Q 044585          288 SWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII  335 (352)
Q Consensus       288 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~  335 (352)
                      +..+++|+.|++.+|++++.++.  ....+++|+.+++.+|+.++++.
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence            88899999999999999999865  35678889999999999887653

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.80  E-value=1e-18  Score=181.01  Aligned_cols=298  Identities=22%  Similarity=0.304  Sum_probs=150.2

Q ss_pred             eeecCCccEEeccccc-----cc-eEeccCCCCC-CCceEEEecccccCcceeecCc--------cchhhhhhceeeecc
Q 044585            3 TLEFPSLEQVSMTHCP-----NM-KTFSRGISST-PKLYVVQVTEREEGEHHWEGNK--------LNSTIQKCYEVMIGF   67 (352)
Q Consensus         3 ~~~l~~L~~L~l~~~~-----~l-~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~   67 (352)
                      +..+++|+.|.+....     .. ..+|.++..+ ++|+.|.+.++.+...+.....        .+..+..++..+..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l  633 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL  633 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence            3456777777775431     11 1344444433 3577777665433332210000        022344455555566


Q ss_pred             CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585           68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK  147 (352)
Q Consensus        68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  147 (352)
                      ++|+.|+++++..++.++.-     ..+++|++|++.+|..+...+ .. +..+++|+.|++++|..++.++...     
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~l-----s~l~~Le~L~L~~c~~L~~lp-~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-----  701 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDL-----SMATNLETLKLSDCSSLVELP-SS-IQYLNKLEDLDMSRCENLEILPTGI-----  701 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCcc-----ccCCcccEEEecCCCCccccc-hh-hhccCCCCEEeCCCCCCcCccCCcC-----
Confidence            67777777666555554321     245667777777766554433 22 4566677777777776666553321     


Q ss_pred             ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhh
Q 044585          148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLL  225 (352)
Q Consensus       148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~  225 (352)
                            .+++|+.|++++|..++.++.      ..++|+.|.+.++ .++.+ |..+  .+++|+.|.  .+... .+..
T Consensus       702 ------~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n-~i~~l-P~~~--~l~~L~~L~l~~~~~~-~l~~  764 (1153)
T PLN03210        702 ------NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDET-AIEEF-PSNL--RLENLDELILCEMKSE-KLWE  764 (1153)
T ss_pred             ------CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCC-ccccc-cccc--cccccccccccccchh-hccc
Confidence                  356666777766665554432      1245666666554 23332 3322  344555444  11100 0000


Q ss_pred             hcccCCCCC-cccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585          226 AHQVQPLFD-EKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       226 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~  304 (352)
                        ......+ ....+++|+.|++++|+.+..+|...    ..+++|+.|++++|..++.+|... .+++|+.|++++|..
T Consensus       765 --~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        765 --RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI----QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR  837 (1153)
T ss_pred             --cccccchhhhhccccchheeCCCCCCccccChhh----hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence              0000000 00123455556665555555554332    355555666665555555555443 455555555555554


Q ss_pred             ccccccc------------------cccCccccccEEEEecccccceecc
Q 044585          305 LINLLTL------------------STSRSLIILQSMTIADCKRIEEIIQ  336 (352)
Q Consensus       305 l~~~~~~------------------~~~~~l~~L~~L~i~~c~~l~~~~~  336 (352)
                      +..++..                  .....+++|+.|++.+|++++.+..
T Consensus       838 L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        838 LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             cccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            4333210                  1235678899999999999887654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=5.7e-19  Score=181.85  Aligned_cols=61  Identities=15%  Similarity=0.081  Sum_probs=32.3

Q ss_pred             cCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          267 FANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       267 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      .++|+.|++.++.....+|..+..+++|++|++++|..-...+.  .+..+++|+.|+++++.
T Consensus       379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNN  439 (968)
T ss_pred             cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCc
Confidence            34455555555433334444455566677777766643323221  34456667777776653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=1.5e-18  Score=178.71  Aligned_cols=88  Identities=18%  Similarity=0.066  Sum_probs=59.2

Q ss_pred             cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccc
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLI  318 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  318 (352)
                      +++|+.|++++++....++ ..+   ..+++|+.|++.+|.....+|..+..+++|+.|+++++. ++...+ .....++
T Consensus       379 ~~~L~~L~l~~n~l~~~~p-~~~---~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~  452 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIP-KSL---GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN-SRKWDMP  452 (968)
T ss_pred             cCCCCEEECcCCEecccCC-HHH---hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-hhhccCC
Confidence            3455555555533222222 222   468899999999986555677778889999999998775 444323 2345688


Q ss_pred             cccEEEEecccccc
Q 044585          319 ILQSMTIADCKRIE  332 (352)
Q Consensus       319 ~L~~L~i~~c~~l~  332 (352)
                      +|+.|++++|....
T Consensus       453 ~L~~L~L~~n~~~~  466 (968)
T PLN00113        453 SLQMLSLARNKFFG  466 (968)
T ss_pred             CCcEEECcCceeee
Confidence            99999999986543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-17  Score=151.60  Aligned_cols=289  Identities=16%  Similarity=0.196  Sum_probs=154.6

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCc----------cchhhhhhceeee-ccCcccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNK----------LNSTIQKCYEVMI-GFRDIEHL   73 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~l~~~~~-~~~~L~~L   73 (352)
                      .+|+|+.+.+..| .++.+|.......+|+.|+|.++.+.+..-+..+          ....+.+++..-+ .-+++++|
T Consensus       100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L  178 (873)
T KOG4194|consen  100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL  178 (873)
T ss_pred             cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence            4788888888887 7888887666777788888887655543311100          0112223332222 22567777


Q ss_pred             EeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCC
Q 044585           74 QLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGP  153 (352)
Q Consensus        74 ~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  153 (352)
                      +++++. ++.+..+. +.  .+.+|..|.++.+ .++..++. .+++++.|+.|++..+. ++.+ ..       ..++ 
T Consensus       179 ~La~N~-It~l~~~~-F~--~lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN~-iriv-e~-------ltFq-  242 (873)
T KOG4194|consen  179 NLASNR-ITTLETGH-FD--SLNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRNR-IRIV-EG-------LTFQ-  242 (873)
T ss_pred             eecccc-cccccccc-cc--ccchheeeecccC-cccccCHH-Hhhhcchhhhhhccccc-eeee-hh-------hhhc-
Confidence            777766 66655444 32  3667788888876 45555443 47778888888887643 3322 00       0011 


Q ss_pred             CCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCC
Q 044585          154 RFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPL  232 (352)
Q Consensus       154 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~  232 (352)
                      .+++|+.|.+.... +..+-  ++.+..+.++++|+++.. .+......+++ +++.|+.|+ +.+.+..+..+.     
T Consensus       243 gL~Sl~nlklqrN~-I~kL~--DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~-----  312 (873)
T KOG4194|consen  243 GLPSLQNLKLQRND-ISKLD--DGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDS-----  312 (873)
T ss_pred             CchhhhhhhhhhcC-ccccc--Ccceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchhhhheeecch-----
Confidence            45666666553321 11111  113444555666665544 34433233333 555566655 555554443332     


Q ss_pred             CCcccccCCcceeeccccccccccc------------------------ccccccccccCCcceEEEecCCC---ccccc
Q 044585          233 FDEKLTFPQLKELKLSRLHKVQHLW------------------------KENDESNKAFANLKSLEIFECSK---LQKLV  285 (352)
Q Consensus       233 ~~~~~~~~~L~~L~l~~~~~l~~l~------------------------~~~~~~~~~~~~L~~L~l~~c~~---l~~l~  285 (352)
                         |.-.++|++|+|+. +.++.++                        ...+   ..+.+|+.|+++++.-   +++-.
T Consensus       313 ---WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  313 ---WSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             ---hhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEecch
Confidence               23444555555554 3444444                        4333   4455555555555421   12211


Q ss_pred             CCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          286 PASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       286 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      ..+..+++|+.|.+.+ ++++.++. ..+..++.|+.|++.+.+
T Consensus       386 ~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  386 VAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             hhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence            2344577777777733 36666643 456667777777776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.61  E-value=7.7e-18  Score=154.54  Aligned_cols=280  Identities=18%  Similarity=0.240  Sum_probs=143.6

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      |.+|++|.+.++ ++..+....+.++.||.+.++.+            +.....+|..++.+..|..|+++.+. +++.|
T Consensus        54 lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N------------~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP  119 (1255)
T KOG0444|consen   54 LQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDN------------NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVP  119 (1255)
T ss_pred             Hhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhcc------------ccccCCCCchhcccccceeeecchhh-hhhcc
Confidence            445555555554 33333333444555555555532            33445566666667777777777665 66655


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc----ccc--------cccccC-
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE----LNA--------KEEHIG-  152 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----~~~--------~~~~~~-  152 (352)
                      .+.    +.-+++..|+++++ ++..+ |-..+.+++.|-.|+++++ .++.+|+-..    +..        ...-+. 
T Consensus       120 ~~L----E~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ  192 (1255)
T KOG0444|consen  120 TNL----EYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ  192 (1255)
T ss_pred             hhh----hhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence            554    34456666666664 44443 3334455556666666553 2333322100    000        000000 


Q ss_pred             -CCCcccCeeccccccc-cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhccc
Q 044585          153 -PRFPRLNRLRLIDLPK-LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQV  229 (352)
Q Consensus       153 -~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~  229 (352)
                       +.+++|++|++++... +..++.   .+..+.+|+.++++.. ++... |.++. ++++|++|. +.+.++.+....  
T Consensus       193 LPsmtsL~vLhms~TqRTl~N~Pt---sld~l~NL~dvDlS~N-~Lp~v-Pecly-~l~~LrrLNLS~N~iteL~~~~--  264 (1255)
T KOG0444|consen  193 LPSMTSLSVLHMSNTQRTLDNIPT---SLDDLHNLRDVDLSEN-NLPIV-PECLY-KLRNLRRLNLSGNKITELNMTE--  264 (1255)
T ss_pred             CccchhhhhhhcccccchhhcCCC---chhhhhhhhhcccccc-CCCcc-hHHHh-hhhhhheeccCcCceeeeeccH--
Confidence             0233344444433221 111222   3334555666666433 44443 55555 566666666 555655554332  


Q ss_pred             CCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCC-CcccccCCccCCCCCcEEeecCCcccccc
Q 044585          230 QPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECS-KLQKLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       230 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~-~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                             +.+.+|++|+++. ++++.+|...    ..+++|+.|.+.++. ....+|.+++.+-.|+++...++ +++-+
T Consensus       265 -------~~W~~lEtLNlSr-NQLt~LP~av----cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElV  331 (1255)
T KOG0444|consen  265 -------GEWENLETLNLSR-NQLTVLPDAV----CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELV  331 (1255)
T ss_pred             -------HHHhhhhhhcccc-chhccchHHH----hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccC
Confidence                   2245666666666 5666666443    356667776665542 12356667777777777777443 55655


Q ss_pred             ccccccCccccccEEEEeccc
Q 044585          309 LTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       309 ~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      |.  ..-.|+.|+.|.+....
T Consensus       332 PE--glcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  332 PE--GLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             ch--hhhhhHHHHHhcccccc
Confidence            43  34567888888877653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.58  E-value=7.3e-17  Score=148.23  Aligned_cols=288  Identities=15%  Similarity=0.144  Sum_probs=188.4

Q ss_pred             eecCCccEEeccccccce--EeccCCCCCCCceEEEecccccCccee----------ecCccchhhhhhceee-eccCcc
Q 044585            4 LEFPSLEQVSMTHCPNMK--TFSRGISSTPKLYVVQVTEREEGEHHW----------EGNKLNSTIQKCYEVM-IGFRDI   70 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~~~~l~~~~-~~~~~L   70 (352)
                      ..+|.||.+.++++ ++.  .+|..++++.-|.+|||+++.+.+-+.          ... .+..|+.+|... .++..|
T Consensus        75 s~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL-S~N~IetIPn~lfinLtDL  152 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL-SYNNIETIPNSLFINLTDL  152 (1255)
T ss_pred             ccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc-ccCccccCCchHHHhhHhH
Confidence            45899999999998 443  788888999999999999765554331          111 233455566443 355566


Q ss_pred             ceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC-cceeeeecccccccc
Q 044585           71 EHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL-IEEVLHLEELNAKEE  149 (352)
Q Consensus        71 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~  149 (352)
                      -.|+++++. +..+|...    ..+.+|+.|++++++-.  ......+..+++|+.|++++-+. +..+|.-..      
T Consensus       153 LfLDLS~Nr-Le~LPPQ~----RRL~~LqtL~Ls~NPL~--hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld------  219 (1255)
T KOG0444|consen  153 LFLDLSNNR-LEMLPPQI----RRLSMLQTLKLSNNPLN--HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD------  219 (1255)
T ss_pred             hhhccccch-hhhcCHHH----HHHhhhhhhhcCCChhh--HHHHhcCccchhhhhhhcccccchhhcCCCchh------
Confidence            666666555 55444444    45667777777765421  12223344556666666665332 222222111      


Q ss_pred             ccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcc
Q 044585          150 HIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQ  228 (352)
Q Consensus       150 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~  228 (352)
                          .+.||..++++. .++...+.   .+..+++|++|.+++. .++.+ ..... .-.+|+.|. +.++++.++... 
T Consensus       220 ----~l~NL~dvDlS~-N~Lp~vPe---cly~l~~LrrLNLS~N-~iteL-~~~~~-~W~~lEtLNlSrNQLt~LP~av-  287 (1255)
T KOG0444|consen  220 ----DLHNLRDVDLSE-NNLPIVPE---CLYKLRNLRRLNLSGN-KITEL-NMTEG-EWENLETLNLSRNQLTVLPDAV-  287 (1255)
T ss_pred             ----hhhhhhhccccc-cCCCcchH---HHhhhhhhheeccCcC-ceeee-eccHH-HHhhhhhhccccchhccchHHH-
Confidence                566888888874 34554444   5677899999999987 45544 22211 236788888 888888776653 


Q ss_pred             cCCCCCcccccCCcceeecccccccc--cccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccc
Q 044585          229 VQPLFDEKLTFPQLKELKLSRLHKVQ--HLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLI  306 (352)
Q Consensus       229 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~  306 (352)
                              -.+++|+.|.+.+ +.++  .+|...    ..+..|+.+...++ +++-.|.++..|..|+.|.+ +|+++.
T Consensus       288 --------cKL~kL~kLy~n~-NkL~FeGiPSGI----GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L-~~NrLi  352 (1255)
T KOG0444|consen  288 --------CKLTKLTKLYANN-NKLTFEGIPSGI----GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKL-DHNRLI  352 (1255)
T ss_pred             --------hhhHHHHHHHhcc-CcccccCCccch----hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcc-ccccee
Confidence                    4578899988877 4443  344332    46667777777765 78888999999999999999 777787


Q ss_pred             ccccccccCccccccEEEEecccccceec
Q 044585          307 NLLTLSTSRSLIILQSMTIADCKRIEEII  335 (352)
Q Consensus       307 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~  335 (352)
                      .+|.  ...-++.|+.|+++..|++.--+
T Consensus       353 TLPe--aIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  353 TLPE--AIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             echh--hhhhcCCcceeeccCCcCccCCC
Confidence            7765  45668889999999998875433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.57  E-value=1.9e-17  Score=145.15  Aligned_cols=294  Identities=17%  Similarity=0.188  Sum_probs=183.5

Q ss_pred             CccEEeccccccceEeccC--CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            8 SLEQVSMTHCPNMKTFSRG--ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      .||.|.++||.....-+..  -..+|+++.|++.+|           .+.+...+......++.|+.|++..|..+++..
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc-----------~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~  207 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC-----------KKITDSSLLSLARYCRKLRHLNLHSCSSITDVS  207 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcc-----------eeccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence            4667777777544322211  145777777777755           222222233333356777777777777666544


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID  165 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  165 (352)
                      ... +. +.+++|++|+++.|+.+...........+..++.+..+||..++.- .+..+.+       .++-+.++++.+
T Consensus       208 Lk~-la-~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-~l~~~~~-------~~~~i~~lnl~~  277 (483)
T KOG4341|consen  208 LKY-LA-EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-ALLKAAA-------YCLEILKLNLQH  277 (483)
T ss_pred             HHH-HH-HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-HHHHHhc-------cChHhhccchhh
Confidence            332 22 3567777777777777666444444556666777766677655431 1111111       444555666667


Q ss_pred             ccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccccCCcc
Q 044585          166 LPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLK  243 (352)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~  243 (352)
                      |..+++..... .-..+..|+.|..++|..+++.+...+.+++++|+.+.  .|.+++......-       -.+++.|+
T Consensus       278 c~~lTD~~~~~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-------~rn~~~Le  349 (483)
T KOG4341|consen  278 CNQLTDEDLWL-IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-------GRNCPHLE  349 (483)
T ss_pred             hccccchHHHH-HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-------hcCChhhh
Confidence            76665432111 23345678888888888888877777888888888887  7777665433221       13577888


Q ss_pred             eeecccccccccccccccccccccCCcceEEEecCCCcccc-----cCCccCCCCCcEEeecCCccccccccccccCccc
Q 044585          244 ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-----VPASWHLENLEALKVSKCHRLINLLTLSTSRSLI  318 (352)
Q Consensus       244 ~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  318 (352)
                      .+++.+|....+-.  ..+.+..++.||.+.+++|..+++.     .........|+.+.+.+|+.+++. .......|+
T Consensus       350 ~l~~e~~~~~~d~t--L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~  426 (483)
T KOG4341|consen  350 RLDLEECGLITDGT--LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICR  426 (483)
T ss_pred             hhcccccceehhhh--HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCc
Confidence            88888876544431  1122358899999999998776654     234467788999999999988887 345667888


Q ss_pred             cccEEEEecccccce
Q 044585          319 ILQSMTIADCKRIEE  333 (352)
Q Consensus       319 ~L~~L~i~~c~~l~~  333 (352)
                      +|+.+++.+|..+..
T Consensus       427 ~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  427 NLERIELIDCQDVTK  441 (483)
T ss_pred             ccceeeeechhhhhh
Confidence            999999998876543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.51  E-value=1.7e-15  Score=138.15  Aligned_cols=249  Identities=14%  Similarity=0.207  Sum_probs=120.1

Q ss_pred             CCccEEeccccccceEec-cCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeec-cCccceeEeccCCCccee
Q 044585            7 PSLEQVSMTHCPNMKTFS-RGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIG-FRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~   84 (352)
                      .++++|+|.+| .++.+. ..|..+.+|.+|.|++              ..+..+|...++ +++|+.|++..+. ++.+
T Consensus       173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsr--------------NrittLp~r~Fk~L~~L~~LdLnrN~-iriv  236 (873)
T KOG4194|consen  173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSR--------------NRITTLPQRSFKRLPKLESLDLNRNR-IRIV  236 (873)
T ss_pred             CCceEEeeccc-cccccccccccccchheeeeccc--------------CcccccCHHHhhhcchhhhhhccccc-eeee
Confidence            57888888887 676664 3356777888888884              344555544433 6777777776554 4332


Q ss_pred             -ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC-----------------------cceeee
Q 044585           85 -WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL-----------------------IEEVLH  140 (352)
Q Consensus        85 -~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~~~~  140 (352)
                       |..-    ..+++|+.|.+..+ .+.. ...+.+-.|..+++|++..++.                       ++.+ .
T Consensus       237 e~ltF----qgL~Sl~nlklqrN-~I~k-L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-h  309 (873)
T KOG4194|consen  237 EGLTF----QGLPSLQNLKLQRN-DISK-LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-H  309 (873)
T ss_pred             hhhhh----cCchhhhhhhhhhc-Cccc-ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee-e
Confidence             2211    23455555555443 2222 1122233445555555554332                       2222 1


Q ss_pred             eccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCc
Q 044585          141 LEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTS  219 (352)
Q Consensus       141 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~  219 (352)
                         ..+|.     ..++|+.|+++.. .+..+...  .+..+..|++|.++.. .+..+ ....+..+.+|+.|+ +.+.
T Consensus       310 ---~d~Ws-----ftqkL~~LdLs~N-~i~~l~~~--sf~~L~~Le~LnLs~N-si~~l-~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  310 ---IDSWS-----FTQKLKELDLSSN-RITRLDEG--SFRVLSQLEELNLSHN-SIDHL-AEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             ---cchhh-----hcccceeEecccc-ccccCChh--HHHHHHHhhhhccccc-chHHH-HhhHHHHhhhhhhhcCcCCe
Confidence               11121     3344554444432 22222111  2333444555555443 33332 333333455555555 4444


Q ss_pred             cchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEee
Q 044585          220 EENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKV  299 (352)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l  299 (352)
                      +...+..+..     .+..+++|+.|++.+ ++++.++..++   ..++.|+.|++.++.....=+..+..+ .|++|.+
T Consensus       377 ls~~IEDaa~-----~f~gl~~LrkL~l~g-Nqlk~I~krAf---sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  377 LSWCIEDAAV-----AFNGLPSLRKLRLTG-NQLKSIPKRAF---SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             EEEEEecchh-----hhccchhhhheeecC-ceeeecchhhh---ccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            4433322211     123456666666666 56666666665   566666666666653222222334444 5555555


Q ss_pred             cC
Q 044585          300 SK  301 (352)
Q Consensus       300 ~~  301 (352)
                      ..
T Consensus       447 nS  448 (873)
T KOG4194|consen  447 NS  448 (873)
T ss_pred             cc
Confidence            33

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.37  E-value=7.3e-15  Score=129.15  Aligned_cols=293  Identities=14%  Similarity=0.129  Sum_probs=206.9

Q ss_pred             eeecCCccEEeccccccceEec-cCC-CCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCC
Q 044585            3 TLEFPSLEQVSMTHCPNMKTFS-RGI-SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPR   80 (352)
Q Consensus         3 ~~~l~~L~~L~l~~~~~l~~l~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~   80 (352)
                      +..+|++++|.+.+|.++++-. ..+ ..|++|+.|++..|           .+.+...+-.....+++|++|+++-|+.
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c-----------~~iT~~~Lk~la~gC~kL~~lNlSwc~q  228 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC-----------SSITDVSLKYLAEGCRKLKYLNLSWCPQ  228 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc-----------chhHHHHHHHHHHhhhhHHHhhhccCch
Confidence            4568999999999998776432 112 36999999999965           2222222333344789999999999998


Q ss_pred             cceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCe
Q 044585           81 LREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNR  160 (352)
Q Consensus        81 l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  160 (352)
                      +....... +.. .+.+++.+...||..........+...+..+..+++..|..+++.- +     |.. -. .+..|+.
T Consensus       229 i~~~gv~~-~~r-G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~-----~~i-~~-~c~~lq~  298 (483)
T KOG4341|consen  229 ISGNGVQA-LQR-GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-L-----WLI-AC-GCHALQV  298 (483)
T ss_pred             hhcCcchH-Hhc-cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-H-----HHH-hh-hhhHhhh
Confidence            87644443 333 5667888988899877655444445677788888888998877641 1     100 00 4668999


Q ss_pred             eccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccc
Q 044585          161 LRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLT  238 (352)
Q Consensus       161 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~  238 (352)
                      ++.++|.++.+..... -...+++|+.|-+.+|..+++.-...+..+++.|+.++  .|..++...... .      ..+
T Consensus       299 l~~s~~t~~~d~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-l------s~~  370 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWA-LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-L------SRN  370 (483)
T ss_pred             hcccCCCCCchHHHHH-HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-h------ccC
Confidence            9999998876543222 34567999999999999888776667777899999998  676655431110 0      136


Q ss_pred             cCCcceeeccccccccccccccccc-ccccCCcceEEEecCCCccc-ccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDES-NKAFANLKSLEIFECSKLQK-LVPASWHLENLEALKVSKCHRLINLLTLSTSRS  316 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  316 (352)
                      +|.|+.+.++.|..+++....++.. ......|..+.+.+|+.+++ ....+..+++|+.+++..|..++..+......+
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            8999999999998877763332211 13567899999999998774 334556789999999999999888776667777


Q ss_pred             cccccEEE
Q 044585          317 LIILQSMT  324 (352)
Q Consensus       317 l~~L~~L~  324 (352)
                      +|+++...
T Consensus       451 lp~i~v~a  458 (483)
T KOG4341|consen  451 LPNIKVHA  458 (483)
T ss_pred             Cccceehh
Confidence            77776543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.29  E-value=2e-11  Score=119.50  Aligned_cols=74  Identities=23%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             CcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccc
Q 044585          241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIIL  320 (352)
Q Consensus       241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  320 (352)
                      +|+.|++++ +.++.++.       ..++|+.|+++++ .++.+|..   ..+|+.|+++++ +++.+|.  .+..+++|
T Consensus       383 ~L~~LdLs~-N~Lt~LP~-------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L  447 (788)
T PRK15387        383 GLKELIVSG-NRLTSLPV-------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPE--SLIHLSSE  447 (788)
T ss_pred             ccceEEecC-CcccCCCC-------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccCh--HHhhccCC
Confidence            566666665 34444441       2345666666665 34455422   234555666433 4454432  13345556


Q ss_pred             cEEEEeccc
Q 044585          321 QSMTIADCK  329 (352)
Q Consensus       321 ~~L~i~~c~  329 (352)
                      +.|++++++
T Consensus       448 ~~LdLs~N~  456 (788)
T PRK15387        448 TTVNLEGNP  456 (788)
T ss_pred             CeEECCCCC
Confidence            666666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.28  E-value=1.3e-13  Score=132.06  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      ..-++|+.|...+|+..+..+  .....+|+++++++              .....+|..++.+++|+.+....+. ++.
T Consensus       216 ~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~--------------n~l~~lp~wi~~~~nle~l~~n~N~-l~~  278 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISH--------------NNLSNLPEWIGACANLEALNANHNR-LVA  278 (1081)
T ss_pred             ecCcchheeeeccCcceeecc--ccccccceeeecch--------------hhhhcchHHHHhcccceEecccchh-HHh
Confidence            345667777777764332221  12366788888883              3556677777788999999988877 676


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV  138 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  138 (352)
                      ++...    ...++|++|.+..| .+...+++  ...+++|+.|+++.+. +..+
T Consensus       279 lp~ri----~~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~N~-L~~l  325 (1081)
T KOG0618|consen  279 LPLRI----SRITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQSNN-LPSL  325 (1081)
T ss_pred             hHHHH----hhhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehhcc-cccc
Confidence            66555    34678888888887 56776664  3467888899988754 4433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.27  E-value=1.1e-11  Score=121.95  Aligned_cols=246  Identities=12%  Similarity=0.130  Sum_probs=152.0

Q ss_pred             CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      .+...|.+.++ +++.+|..+  .++|+.|++++|              .+..+|..+.  .+|++|+++++. ++.++.
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~I--p~~L~~L~Ls~N--------------~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~  237 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPACI--PEQITTLILDNN--------------ELKSLPENLQ--GNIKTLYANSNQ-LTSIPA  237 (754)
T ss_pred             cCceEEEeCCC-CcCcCCccc--ccCCcEEEecCC--------------CCCcCChhhc--cCCCEEECCCCc-cccCCh
Confidence            45677888876 777787655  467899999843              4445555433  578999998876 766433


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      .      ..++|+.|++++| ++... |.. +  .++|+.|++++| .+..++..            ..++|+.|+++++
T Consensus       238 ~------l~~~L~~L~Ls~N-~L~~L-P~~-l--~s~L~~L~Ls~N-~L~~LP~~------------l~~sL~~L~Ls~N  293 (754)
T PRK15370        238 T------LPDTIQEMELSIN-RITEL-PER-L--PSALQSLDLFHN-KISCLPEN------------LPEELRYLSVYDN  293 (754)
T ss_pred             h------hhccccEEECcCC-ccCcC-Chh-H--hCCCCEEECcCC-ccCccccc------------cCCCCcEEECCCC
Confidence            2      2457888999887 45543 333 2  357888888864 45444321            2347888888775


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL  245 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L  245 (352)
                       +++.++..     ..++|+.|.++++ .++.+ |..+.   ++|+.|+ ..+.++.++..           ..++|+.|
T Consensus       294 -~Lt~LP~~-----lp~sL~~L~Ls~N-~Lt~L-P~~l~---~sL~~L~Ls~N~Lt~LP~~-----------l~~sL~~L  351 (754)
T PRK15370        294 -SIRTLPAH-----LPSGITHLNVQSN-SLTAL-PETLP---PGLKTLEAGENALTSLPAS-----------LPPELQVL  351 (754)
T ss_pred             -ccccCccc-----chhhHHHHHhcCC-ccccC-Ccccc---ccceeccccCCccccCChh-----------hcCcccEE
Confidence             35544321     1247788888776 45543 44332   5777777 55555543321           13578888


Q ss_pred             ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccc--cccCccccccEE
Q 044585          246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTL--STSRSLIILQSM  323 (352)
Q Consensus       246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L  323 (352)
                      +++++ .++.++..      ..++|+.|++++| .++.+|..+.  .+|+.|+++++ +++.+|..  .....++++..+
T Consensus       352 ~Ls~N-~L~~LP~~------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L  420 (754)
T PRK15370        352 DVSKN-QITVLPET------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRI  420 (754)
T ss_pred             ECCCC-CCCcCChh------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEE
Confidence            88884 56666532      3467888888887 5667765432  36778888664 45555321  122234667777


Q ss_pred             EEeccc
Q 044585          324 TIADCK  329 (352)
Q Consensus       324 ~i~~c~  329 (352)
                      ++.+.+
T Consensus       421 ~L~~Np  426 (754)
T PRK15370        421 IVEYNP  426 (754)
T ss_pred             EeeCCC
Confidence            777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.21  E-value=5.8e-14  Score=123.03  Aligned_cols=241  Identities=17%  Similarity=0.156  Sum_probs=133.3

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      ++.|.+|+++++ .+..+|+.++.+..++.++.+              -..+.++|..++.+++|+.++.+.+. +.+.+
T Consensus        67 L~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs--------------~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~  130 (565)
T KOG0472|consen   67 LACLTVLNVHDN-KLSQLPAAIGELEALKSLNVS--------------HNKLSELPEQIGSLISLVKLDCSSNE-LKELP  130 (565)
T ss_pred             ccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcc--------------cchHhhccHHHhhhhhhhhhhccccc-eeecC
Confidence            444555555554 445555555555555555555              23455666666677777777766655 55544


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID  165 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  165 (352)
                      .+.    +.+..|..++..++ ++...++ + +..+.+|..+++.++.. +..++...          .+.+|++++..+
T Consensus       131 ~~i----~~~~~l~dl~~~~N-~i~slp~-~-~~~~~~l~~l~~~~n~l-~~l~~~~i----------~m~~L~~ld~~~  192 (565)
T KOG0472|consen  131 DSI----GRLLDLEDLDATNN-QISSLPE-D-MVNLSKLSKLDLEGNKL-KALPENHI----------AMKRLKHLDCNS  192 (565)
T ss_pred             chH----HHHhhhhhhhcccc-ccccCch-H-HHHHHHHHHhhccccch-hhCCHHHH----------HHHHHHhcccch
Confidence            444    45556666666554 4444332 2 34555666666666432 22211110          355666655432


Q ss_pred             ccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcce
Q 044585          166 LPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKE  244 (352)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~  244 (352)
                      . .++.++.   .+..+.+|+.|++... ++..+ | .+ ..|..|++++ +-++++-++...        ...++++..
T Consensus       193 N-~L~tlP~---~lg~l~~L~~LyL~~N-ki~~l-P-ef-~gcs~L~Elh~g~N~i~~lpae~--------~~~L~~l~v  256 (565)
T KOG0472|consen  193 N-LLETLPP---ELGGLESLELLYLRRN-KIRFL-P-EF-PGCSLLKELHVGENQIEMLPAEH--------LKHLNSLLV  256 (565)
T ss_pred             h-hhhcCCh---hhcchhhhHHHHhhhc-ccccC-C-CC-CccHHHHHHHhcccHHHhhHHHH--------hccccccee
Confidence            1 2344444   4556666666666664 34433 3 22 2566666666 555555554443        234667777


Q ss_pred             eecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585          245 LKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       245 L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      ||+.+ ++++.+|++..    .+.+|..|+++++ .+..+|..++.+ .|+.|.+.+++
T Consensus       257 LDLRd-Nklke~Pde~c----lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  257 LDLRD-NKLKEVPDEIC----LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             eeccc-cccccCchHHH----HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence            77777 56777776643    5666777777765 456677666666 66666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.19  E-value=8.2e-11  Score=115.32  Aligned_cols=228  Identities=18%  Similarity=0.168  Sum_probs=130.8

Q ss_pred             CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      ++|+.|.+.+| +++.+|..   .++|++|++++|              .+..+|.   ..++|++|++.++. +..++.
T Consensus       222 ~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N--------------~LtsLP~---lp~sL~~L~Ls~N~-L~~Lp~  279 (788)
T PRK15387        222 AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGN--------------QLTSLPV---LPPGLLELSIFSNP-LTHLPA  279 (788)
T ss_pred             cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCC--------------ccCcccC---cccccceeeccCCc-hhhhhh
Confidence            46899999987 78877753   689999999954              3333442   13466677766655 443221


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeec----cccccccccC--CCC-cccC
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLE----ELNAKEEHIG--PRF-PRLN  159 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~~~~~~--~~~-~~L~  159 (352)
                             .+++|+.|++++| .+...+.     ..++|+.|++++| .+..++...    .+......+.  +.+ ++|+
T Consensus       280 -------lp~~L~~L~Ls~N-~Lt~LP~-----~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq  345 (788)
T PRK15387        280 -------LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQ  345 (788)
T ss_pred             -------chhhcCEEECcCC-ccccccc-----cccccceeECCCC-ccccCCCCcccccccccccCccccccccccccc
Confidence                   2345666666665 3443321     2345666666654 233322100    0000000000  012 2566


Q ss_pred             eeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccc
Q 044585          160 RLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLT  238 (352)
Q Consensus       160 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~  238 (352)
                      .|+++++ +++.++.      ..++|+.|.++++ .+..+ |..    ..+|+.|+ +.+.++.++.            .
T Consensus       346 ~LdLS~N-~Ls~LP~------lp~~L~~L~Ls~N-~L~~L-P~l----~~~L~~LdLs~N~Lt~LP~------------l  400 (788)
T PRK15387        346 ELSVSDN-QLASLPT------LPSELYKLWAYNN-RLTSL-PAL----PSGLKELIVSGNRLTSLPV------------L  400 (788)
T ss_pred             eEecCCC-ccCCCCC------CCcccceehhhcc-ccccC-ccc----ccccceEEecCCcccCCCC------------c
Confidence            6666553 2333322      1245666666554 34433 321    24566666 5555554321            1


Q ss_pred             cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~  304 (352)
                      .++|+.|++++ +.++.+|.       .+.+|+.|+++++ .++.+|..+..+++|+.|++++++-
T Consensus       401 ~s~L~~LdLS~-N~LssIP~-------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        401 PSELKELMVSG-NRLTSLPM-------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             ccCCCEEEccC-CcCCCCCc-------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence            35899999999 46777762       3457889999987 6888998888999999999988753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.18  E-value=8.8e-14  Score=121.92  Aligned_cols=261  Identities=19%  Similarity=0.213  Sum_probs=178.0

Q ss_pred             ccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCC
Q 044585            9 LEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus         9 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      +..|.+.++ .+..+......+..|.+|++.              .....++|..++.+..++.++.+.++ +..++...
T Consensus        47 l~~lils~N-~l~~l~~dl~nL~~l~vl~~~--------------~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i  110 (565)
T KOG0472|consen   47 LQKLILSHN-DLEVLREDLKNLACLTVLNVH--------------DNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQI  110 (565)
T ss_pred             hhhhhhccC-chhhccHhhhcccceeEEEec--------------cchhhhCCHHHHHHHHHHHhhcccch-HhhccHHH
Confidence            455666666 455555555667778888877              34566778778888888888888776 66666655


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK  168 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  168 (352)
                          +.+.+|++++.+.+ .+...++ + +..+-.|+.++..+++ +...+....          .+.+|..+.+.+. +
T Consensus       111 ----~s~~~l~~l~~s~n-~~~el~~-~-i~~~~~l~dl~~~~N~-i~slp~~~~----------~~~~l~~l~~~~n-~  171 (565)
T KOG0472|consen  111 ----GSLISLVKLDCSSN-ELKELPD-S-IGRLLDLEDLDATNNQ-ISSLPEDMV----------NLSKLSKLDLEGN-K  171 (565)
T ss_pred             ----hhhhhhhhhhcccc-ceeecCc-h-HHHHhhhhhhhccccc-cccCchHHH----------HHHHHHHhhcccc-c
Confidence                56777888887776 3444332 2 4566777777776654 333322111          4556666666543 2


Q ss_pred             cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeec
Q 044585          169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKL  247 (352)
Q Consensus       169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  247 (352)
                      ++..+.   ....+..|++|+.... .++.+ |..++ .+.+|+.|+ .-+++..++          +++.+..|++|.+
T Consensus       172 l~~l~~---~~i~m~~L~~ld~~~N-~L~tl-P~~lg-~l~~L~~LyL~~Nki~~lP----------ef~gcs~L~Elh~  235 (565)
T KOG0472|consen  172 LKALPE---NHIAMKRLKHLDCNSN-LLETL-PPELG-GLESLELLYLRRNKIRFLP----------EFPGCSLLKELHV  235 (565)
T ss_pred             hhhCCH---HHHHHHHHHhcccchh-hhhcC-Chhhc-chhhhHHHHhhhcccccCC----------CCCccHHHHHHHh
Confidence            444333   2233677888876543 45554 66665 677777777 666666554          2466789999999


Q ss_pred             ccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585          248 SRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD  327 (352)
Q Consensus       248 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  327 (352)
                      +. +.++.++.++.   ..++++.+|+++++ +++++|.++..+.+|++||++++ .++.+|.  -..++ .|+.|.+.+
T Consensus       236 g~-N~i~~lpae~~---~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~--sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  236 GE-NQIEMLPAEHL---KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLPY--SLGNL-HLKFLALEG  306 (565)
T ss_pred             cc-cHHHhhHHHHh---cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCCc--ccccc-eeeehhhcC
Confidence            88 78888888776   78999999999997 89999999999999999999655 6677754  23445 688888888


Q ss_pred             cc
Q 044585          328 CK  329 (352)
Q Consensus       328 c~  329 (352)
                      .|
T Consensus       307 NP  308 (565)
T KOG0472|consen  307 NP  308 (565)
T ss_pred             Cc
Confidence            76

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.18  E-value=3e-11  Score=118.76  Aligned_cols=223  Identities=13%  Similarity=0.121  Sum_probs=153.1

Q ss_pred             CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      ++|+.|++.+| .++.+|..+  ..+|++|++++|              .+..+|..+  .++|+.|++++|. +..++.
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l--~~nL~~L~Ls~N--------------~LtsLP~~l--~~~L~~L~Ls~N~-L~~LP~  258 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENL--QGNIKTLYANSN--------------QLTSIPATL--PDTIQEMELSINR-ITELPE  258 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhh--ccCCCEEECCCC--------------ccccCChhh--hccccEEECcCCc-cCcCCh
Confidence            47999999998 788888766  369999999954              344455433  2579999999987 666443


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      .      ..++|+.|+++++ .+... |..   -.++|+.|++++|. ++.++..            ..++|+.|++.++
T Consensus       259 ~------l~s~L~~L~Ls~N-~L~~L-P~~---l~~sL~~L~Ls~N~-Lt~LP~~------------lp~sL~~L~Ls~N  314 (754)
T PRK15370        259 R------LPSALQSLDLFHN-KISCL-PEN---LPEELRYLSVYDNS-IRTLPAH------------LPSGITHLNVQSN  314 (754)
T ss_pred             h------HhCCCCEEECcCC-ccCcc-ccc---cCCCCcEEECCCCc-cccCccc------------chhhHHHHHhcCC
Confidence            3      3458999999977 56654 333   23589999999874 4443210            2347888888775


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL  245 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L  245 (352)
                      . +..++.     ..+++|+.|.+.+| .++.+ |..+.   ++|+.|+ ..+.++.++..           ..++|+.|
T Consensus       315 ~-Lt~LP~-----~l~~sL~~L~Ls~N-~Lt~L-P~~l~---~sL~~L~Ls~N~L~~LP~~-----------lp~~L~~L  372 (754)
T PRK15370        315 S-LTALPE-----TLPPGLKTLEAGEN-ALTSL-PASLP---PELQVLDVSKNQITVLPET-----------LPPTITTL  372 (754)
T ss_pred             c-cccCCc-----cccccceeccccCC-ccccC-Chhhc---CcccEEECCCCCCCcCChh-----------hcCCcCEE
Confidence            3 444332     12468999999888 46654 55543   7888888 66666654322           13689999


Q ss_pred             ecccccccccccccccccccccCCcceEEEecCCCcccccCCc----cCCCCCcEEeecCCc
Q 044585          246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPAS----WHLENLEALKVSKCH  303 (352)
Q Consensus       246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l~~c~  303 (352)
                      ++++| .++.+|..      ...+|+.|+++++ +++.+|..+    ...+++..+++.+++
T Consensus       373 dLs~N-~Lt~LP~~------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        373 DVSRN-ALTNLPEN------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ECCCC-cCCCCCHh------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            99995 67777654      2347999999987 567776543    345788999997765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=2.8e-12  Score=123.17  Aligned_cols=246  Identities=17%  Similarity=0.160  Sum_probs=136.5

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      -.+|+++++.++ ++..+|..+..+.+|+.++..+              ..+..+|..+....+|+.|.+..|. +..++
T Consensus       240 p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~--------------N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip  303 (1081)
T KOG0618|consen  240 PLNLQYLDISHN-NLSNLPEWIGACANLEALNANH--------------NRLVALPLRISRITSLVSLSAAYNE-LEYIP  303 (1081)
T ss_pred             cccceeeecchh-hhhcchHHHHhcccceEecccc--------------hhHHhhHHHHhhhhhHHHHHhhhhh-hhhCC
Confidence            468899999997 8888997778999999999993              3456777777777888888877776 66655


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCC-CcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNN-LRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      ...    +.+++|++|++..+ ++...++ ..+..... |+.|..+.+ .++..+..++      .   .++.|+.|.+.
T Consensus       304 ~~l----e~~~sL~tLdL~~N-~L~~lp~-~~l~v~~~~l~~ln~s~n-~l~~lp~~~e------~---~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  304 PFL----EGLKSLRTLDLQSN-NLPSLPD-NFLAVLNASLNTLNVSSN-KLSTLPSYEE------N---NHAALQELYLA  367 (1081)
T ss_pred             Ccc----cccceeeeeeehhc-cccccch-HHHhhhhHHHHHHhhhhc-cccccccccc------h---hhHHHHHHHHh
Confidence            544    45788888888876 5555443 32333222 444444432 2332222211      0   34455555554


Q ss_pred             cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcc
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLK  243 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~  243 (352)
                      +..--...++   .+..+++|+.|++++. .+..+ |.+...++..|++|. +.++++.++..         +..++.|+
T Consensus       368 nN~Ltd~c~p---~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGNkL~~Lp~t---------va~~~~L~  433 (1081)
T KOG0618|consen  368 NNHLTDSCFP---VLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGNKLTTLPDT---------VANLGRLH  433 (1081)
T ss_pred             cCcccccchh---hhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccchhhhhhHH---------HHhhhhhH
Confidence            4321111111   3445566666666554 34433 555554555555555 55555555533         23455555


Q ss_pred             eeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCC-CCCcEEeecCCcc
Q 044585          244 ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHL-ENLEALKVSKCHR  304 (352)
Q Consensus       244 ~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-~~L~~L~l~~c~~  304 (352)
                      +|.... +.+..+|..     ..++.|+.++++.+ .++.+.-..... ++|++|+++++.+
T Consensus       434 tL~ahs-N~l~~fPe~-----~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  434 TLRAHS-NQLLSFPEL-----AQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHhhcC-Cceeechhh-----hhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence            555554 445555522     35555555555543 333211110111 5555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.11  E-value=3.5e-11  Score=120.18  Aligned_cols=108  Identities=21%  Similarity=0.262  Sum_probs=76.2

Q ss_pred             ecCCccEEecccccc-ceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcc
Q 044585            5 EFPSLEQVSMTHCPN-MKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLR   82 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~-l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~   82 (352)
                      .+++|++|-+.++.. +..++.. |..++.|++||++             .|....++|..++.+.+||.|+++++. ++
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs-------------~~~~l~~LP~~I~~Li~LryL~L~~t~-I~  608 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS-------------GNSSLSKLPSSIGELVHLRYLDLSDTG-IS  608 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC-------------CCCccCcCChHHhhhhhhhcccccCCC-cc
Confidence            356788888877753 5555554 3468888888888             456777888888888888888888776 77


Q ss_pred             eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585           83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                      .+|.+.    +++..|.+|++..+..+...  .+....+++|++|.+...
T Consensus       609 ~LP~~l----~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  609 HLPSGL----GNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccchHH----HHHHhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence            766665    67778888888776555443  233455788888887653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=4.4e-11  Score=119.42  Aligned_cols=278  Identities=19%  Similarity=0.233  Sum_probs=155.6

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .++|.|++|++++|..+..+|..++.+.+||+|+++              .+.+..+|..+.++..|.+|++..+..+..
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~--------------~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~  633 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS--------------DTGISHLPSGLGNLKKLIYLNLEVTGRLES  633 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhccccc--------------CCCccccchHHHHHHhhheecccccccccc
Confidence            458999999999999999999999999999999999              567788999999999999999998775554


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCe---
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNR---  160 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~---  160 (352)
                      .+...    ..+++|++|.+..-....+......+..+.+|+.+....... ..+..+.           .+++|.+   
T Consensus       634 ~~~i~----~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~-----------~~~~L~~~~~  697 (889)
T KOG4658|consen  634 IPGIL----LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLL-----------GMTRLRSLLQ  697 (889)
T ss_pred             ccchh----hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhh-----------hhHHHHHHhH
Confidence            32222    358899999997753111211222345566666666644332 1111111           2334432   


Q ss_pred             -eccccccccccccccCCceeeccCcceEeeccCCCCcccc---cchhhhc-cCCCCCCC--CCCccchhhhhcccCCCC
Q 044585          161 -LRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFI---SNSVVHV-TTNNKEPQ--KLTSEENFLLAHQVQPLF  233 (352)
Q Consensus       161 -L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~~-~~~L~~L~--~~~~l~~~~~~~~~~~~~  233 (352)
                       +.+.++..-.. .   .....+.+|+.|.+.+|...+...   ....... ++++..+.  .|.........       
T Consensus       698 ~l~~~~~~~~~~-~---~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-------  766 (889)
T KOG4658|consen  698 SLSIEGCSKRTL-I---SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-------  766 (889)
T ss_pred             hhhhccccccee-e---cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-------
Confidence             22222211111 1   145678899999999996543221   0000101 23343333  45444332211       


Q ss_pred             CcccccCCcceeeccccccccccccccccc------ccccCCcceE-EEecCCCcccccCCccCCCCCcEEeecCCcccc
Q 044585          234 DEKLTFPQLKELKLSRLHKVQHLWKENDES------NKAFANLKSL-EIFECSKLQKLVPASWHLENLEALKVSKCHRLI  306 (352)
Q Consensus       234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~------~~~~~~L~~L-~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~  306 (352)
                         ...|+|+.|.+..|..++.+.......      ...++++..+ .+.+.+++..+-..-...+.|+.+.+..|+++.
T Consensus       767 ---~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~  843 (889)
T KOG4658|consen  767 ---LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLG  843 (889)
T ss_pred             ---hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccc
Confidence               234788888888887777654321100      0123333334 233333333221111223346666666666554


Q ss_pred             ccccccccCccccccEEEEecc-ccccee
Q 044585          307 NLLTLSTSRSLIILQSMTIADC-KRIEEI  334 (352)
Q Consensus       307 ~~~~~~~~~~l~~L~~L~i~~c-~~l~~~  334 (352)
                      .+         |.+..+.+.+| +++...
T Consensus       844 ~~---------P~~~~~~i~~~~~~~~~~  863 (889)
T KOG4658|consen  844 KL---------PLLSTLTIVGCEEKLKEY  863 (889)
T ss_pred             cC---------ccccccceeccccceeec
Confidence            43         34566777775 444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.89  E-value=3.5e-11  Score=94.11  Aligned_cols=159  Identities=18%  Similarity=0.258  Sum_probs=111.1

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      +.+.++..|.++++ +++.+|+.+..+.+|++|+++              |..++++|.+++.++.|+.|++.-+. +..
T Consensus        30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~--------------nnqie~lp~~issl~klr~lnvgmnr-l~~   93 (264)
T KOG0617|consen   30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLS--------------NNQIEELPTSISSLPKLRILNVGMNR-LNI   93 (264)
T ss_pred             cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcc--------------cchhhhcChhhhhchhhhheecchhh-hhc
Confidence            44677888999998 899999999999999999999              66788889888899999999888544 666


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      .+.+-    |.+|-|+.|++..+.-.+...| +-+..++.|+-|.++.++ .+.++...+          .+++|+.|.+
T Consensus        94 lprgf----gs~p~levldltynnl~e~~lp-gnff~m~tlralyl~dnd-fe~lp~dvg----------~lt~lqil~l  157 (264)
T KOG0617|consen   94 LPRGF----GSFPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGDND-FEILPPDVG----------KLTNLQILSL  157 (264)
T ss_pred             Ccccc----CCCchhhhhhccccccccccCC-cchhHHHHHHHHHhcCCC-cccCChhhh----------hhcceeEEee
Confidence            66665    6788899998887632233334 335567788888887743 444443222          6667777766


Q ss_pred             ccccccccccccCCceeeccCcceEeeccCCCCccc
Q 044585          164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETF  199 (352)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  199 (352)
                      .+..-++ ++.   ++..+..|++|++.+. .++.+
T Consensus       158 rdndll~-lpk---eig~lt~lrelhiqgn-rl~vl  188 (264)
T KOG0617|consen  158 RDNDLLS-LPK---EIGDLTRLRELHIQGN-RLTVL  188 (264)
T ss_pred             ccCchhh-CcH---HHHHHHHHHHHhcccc-eeeec
Confidence            5543222 222   4556777888888776 45544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=5e-10  Score=99.64  Aligned_cols=164  Identities=15%  Similarity=0.195  Sum_probs=107.1

Q ss_pred             ecCCccEEeccccccceEecc--CCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcc
Q 044585            5 EFPSLEQVSMTHCPNMKTFSR--GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLR   82 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~   82 (352)
                      ++.+|+...|+++ .....+.  ....|++.+.||++++-+..|           ..+-.....+|+|+.|+++.+. +.
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-----------~~v~~i~eqLp~Le~LNls~Nr-l~  185 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNW-----------FPVLKIAEQLPSLENLNLSSNR-LS  185 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhH-----------HHHHHHHHhcccchhccccccc-cc
Confidence            3678999999988 5555443  334699999999995422222           2222334589999999999877 55


Q ss_pred             eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee-eeeccccccccccCCCCcccCee
Q 044585           83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV-LHLEELNAKEEHIGPRFPRLNRL  161 (352)
Q Consensus        83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~L  161 (352)
                      ..+... . ...+++|+.|.++.| ++..-.....+..+|+|+.|.+.++..+... .+..           .+..|+.|
T Consensus       186 ~~~~s~-~-~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----------i~~~L~~L  251 (505)
T KOG3207|consen  186 NFISSN-T-TLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----------ILQTLQEL  251 (505)
T ss_pred             CCcccc-c-hhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----------hhhHHhhc
Confidence            433332 1 136889999999999 5553333344678999999999998522111 0111           45678888


Q ss_pred             ccccccccccccccCCceeeccCcceEeeccCCCCcc
Q 044585          162 RLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMET  198 (352)
Q Consensus       162 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  198 (352)
                      ++++...+. +.... ....+|.|+.|.++.| ++++
T Consensus       252 dLs~N~li~-~~~~~-~~~~l~~L~~Lnls~t-gi~s  285 (505)
T KOG3207|consen  252 DLSNNNLID-FDQGY-KVGTLPGLNQLNLSST-GIAS  285 (505)
T ss_pred             cccCCcccc-ccccc-ccccccchhhhhcccc-Ccch
Confidence            888765433 22111 4667888888888877 4443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.76  E-value=6e-10  Score=100.40  Aligned_cols=65  Identities=14%  Similarity=0.048  Sum_probs=33.1

Q ss_pred             cccCCcceeecccccccccccccccc--cccccCCcceEEEecCCCcc-----cccCCccCCCCCcEEeecCCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDE--SNKAFANLKSLEIFECSKLQ-----KLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~--~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      ..+++|++|++++| .+++.....+.  .....+.|+.|++.+|. ++     .+...+..+++|++++++++.
T Consensus       218 ~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         218 ASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             cccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            34567777777775 33321111110  00113677777777763 32     222233445677777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.73  E-value=9.1e-10  Score=96.86  Aligned_cols=252  Identities=14%  Similarity=0.164  Sum_probs=127.5

Q ss_pred             CccEEeccccccceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            8 SLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      .-..+.|..| .++.+|.+ |+.+++||.|||+++.++..             -|..+..+++|-+|.+.++.++++++.
T Consensus        68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------------~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFI-------------APDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             cceEEEeccC-CcccCChhhccchhhhceecccccchhhc-------------ChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            3455778787 88888866 56899999999995433332             233344566777777777666777655


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      +. +  +.+..|+.|.+.-| ++.-. ....+..+++|..|.+..+. ++.+.. +.       +. .+.+++.+++...
T Consensus       134 ~~-F--~gL~slqrLllNan-~i~Ci-r~~al~dL~~l~lLslyDn~-~q~i~~-~t-------f~-~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  134 GA-F--GGLSSLQRLLLNAN-HINCI-RQDALRDLPSLSLLSLYDNK-IQSICK-GT-------FQ-GLAAIKTLHLAQN  198 (498)
T ss_pred             hH-h--hhHHHHHHHhcChh-hhcch-hHHHHHHhhhcchhcccchh-hhhhcc-cc-------cc-chhccchHhhhcC
Confidence            54 2  23455555555544 23222 22335566666666666532 222211 00       00 2223333333211


Q ss_pred             cc--------cccccccCC-----------------------ceeeccCcceE--ee-ccCCCCcccccchhhhccCCCC
Q 044585          167 PK--------LKRFCNFTG-----------------------NIIELSELENL--TI-ENCPDMETFISNSVVHVTTNNK  212 (352)
Q Consensus       167 ~~--------l~~~~~~~~-----------------------~~~~~~~L~~L--~l-~~c~~l~~~~~~~~~~~~~~L~  212 (352)
                      +.        +.++....+                       .-.....++.+  .+ ..| ......|..-+..+++|+
T Consensus       199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~  277 (498)
T KOG4237|consen  199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLR  277 (498)
T ss_pred             ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccce
Confidence            10        000000000                       00000111211  01 112 122223444455666677


Q ss_pred             CCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCC
Q 044585          213 EPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHL  291 (352)
Q Consensus       213 ~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~  291 (352)
                      +|+ +.++++.+....        +.....+++|.+.+ +++..+...++   ..+..|++|++.++..-...|..+...
T Consensus       278 ~lnlsnN~i~~i~~~a--------Fe~~a~l~eL~L~~-N~l~~v~~~~f---~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  278 KLNLSNNKITRIEDGA--------FEGAAELQELYLTR-NKLEFVSSGMF---QGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             EeccCCCccchhhhhh--------hcchhhhhhhhcCc-chHHHHHHHhh---hccccceeeeecCCeeEEEeccccccc
Confidence            666 666666554432        34456677777776 56666666666   567777777777763322334455666


Q ss_pred             CCCcEEeecC
Q 044585          292 ENLEALKVSK  301 (352)
Q Consensus       292 ~~L~~L~l~~  301 (352)
                      .+|.+|.+-.
T Consensus       346 ~~l~~l~l~~  355 (498)
T KOG4237|consen  346 FSLSTLNLLS  355 (498)
T ss_pred             ceeeeeehcc
Confidence            6777776643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.5e-09  Score=94.34  Aligned_cols=209  Identities=17%  Similarity=0.189  Sum_probs=122.8

Q ss_pred             CCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccc
Q 044585           93 SFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRF  172 (352)
Q Consensus        93 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  172 (352)
                      ..+.+|+.+.+.+|+ +...+.....+.|++++.|+++++- +........      ... .+|+|+.|.++... +...
T Consensus       118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~------i~e-qLp~Le~LNls~Nr-l~~~  187 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLK------IAE-QLPSLENLNLSSNR-LSNF  187 (505)
T ss_pred             hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHH------HHH-hcccchhccccccc-ccCC
Confidence            467888888888874 3333322457788999999998743 322211111      111 78889888887643 3322


Q ss_pred             cccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCc-cchhhhhcccCCCCCcccccCCcceeecccc
Q 044585          173 CNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTS-EENFLLAHQVQPLFDEKLTFPQLKELKLSRL  250 (352)
Q Consensus       173 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~-l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  250 (352)
                      +... ....++.|+.|.+++| ++..-...++...+|+|+.|+ ..+. +.....+         -..+..|++|+|++.
T Consensus       188 ~~s~-~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---------~~i~~~L~~LdLs~N  256 (505)
T KOG3207|consen  188 ISSN-TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---------TKILQTLQELDLSNN  256 (505)
T ss_pred             cccc-chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch---------hhhhhHHhhccccCC
Confidence            2222 3346788999999998 444333456666889999888 4443 2111111         134668899999985


Q ss_pred             cccccccccccccccccCCcceEEEecCCCccccc--CC-----ccCCCCCcEEeecCCccccccccccccCccccccEE
Q 044585          251 HKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PA-----SWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSM  323 (352)
Q Consensus       251 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~-----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  323 (352)
                      +.+..-.....   ..+|.|..|+++.| ++.++.  +.     ...+++|+.|.+..++- .+.+...-...+++|+.+
T Consensus       257 ~li~~~~~~~~---~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l  331 (505)
T KOG3207|consen  257 NLIDFDQGYKV---GTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHL  331 (505)
T ss_pred             ccccccccccc---ccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhh
Confidence            44443222222   57888888888887 444432  21     24578888888866543 222222233445556655


Q ss_pred             EEec
Q 044585          324 TIAD  327 (352)
Q Consensus       324 ~i~~  327 (352)
                      .+..
T Consensus       332 ~~~~  335 (505)
T KOG3207|consen  332 RITL  335 (505)
T ss_pred             hccc
Confidence            5443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.61  E-value=1.5e-09  Score=85.10  Aligned_cols=130  Identities=24%  Similarity=0.299  Sum_probs=96.6

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+.+|++|++.++ .++.+|.+++++++|+.|+++              -..+..+|..++.||.|+.|++..+. +.+.
T Consensus        54 ~l~nlevln~~nn-qie~lp~~issl~klr~lnvg--------------mnrl~~lprgfgs~p~levldltynn-l~e~  117 (264)
T KOG0617|consen   54 ELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG--------------MNRLNILPRGFGSFPALEVLDLTYNN-LNEN  117 (264)
T ss_pred             Hhhhhhhhhcccc-hhhhcChhhhhchhhhheecc--------------hhhhhcCccccCCCchhhhhhccccc-cccc
Confidence            4678999999887 899999999999999999999              34556788999999999999999776 5443


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      ....-+.  .++.|+.|++.++ .++..++.  +.++++|+.|.++.++.++- +...+          .+.+|+.|++.
T Consensus       118 ~lpgnff--~m~tlralyl~dn-dfe~lp~d--vg~lt~lqil~lrdndll~l-pkeig----------~lt~lrelhiq  181 (264)
T KOG0617|consen  118 SLPGNFF--YMTTLRALYLGDN-DFEILPPD--VGKLTNLQILSLRDNDLLSL-PKEIG----------DLTRLRELHIQ  181 (264)
T ss_pred             cCCcchh--HHHHHHHHHhcCC-CcccCChh--hhhhcceeEEeeccCchhhC-cHHHH----------HHHHHHHHhcc
Confidence            2211011  2467888899987 45555442  67899999999999776643 22221          67888888887


Q ss_pred             cc
Q 044585          165 DL  166 (352)
Q Consensus       165 ~~  166 (352)
                      +.
T Consensus       182 gn  183 (264)
T KOG0617|consen  182 GN  183 (264)
T ss_pred             cc
Confidence            64

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.61  E-value=2.9e-09  Score=101.48  Aligned_cols=248  Identities=19%  Similarity=0.246  Sum_probs=144.4

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC-CCCcccC--CchhhhcCCCCcEEEEccCCCcceeeeec
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC-TNMSSAI--PTNLLRCLNNLRCLEVRNCDLIEEVLHLE  142 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  142 (352)
                      ..++|+.|.+.+|..+.+.+... +. ..+++|++|++++| .......  .......+++|+.|++++|..+.+. .+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDA-LA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-GLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHH-HH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-hHH
Confidence            36888888888887776533221 11 25788999999873 2222221  1234567788999999988765543 111


Q ss_pred             cccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-----CC
Q 044585          143 ELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-----KL  217 (352)
Q Consensus       143 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-----~~  217 (352)
                      .+..       .+++|+.|.+.+|..+++-.... ....+++|++|++++|..+++..-..+..++++|+.+.     .|
T Consensus       263 ~l~~-------~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c  334 (482)
T KOG1947|consen  263 ALAS-------RCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGC  334 (482)
T ss_pred             HHHh-------hCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCC
Confidence            1110       47899999988887654322111 35567889999999998876643444466788888776     34


Q ss_pred             CccchhhhhcccCCCCCccccc-CCcceeecccccccccccccccccccccCCcc-eEEEecCCCc-ccccCCccCCCCC
Q 044585          218 TSEENFLLAHQVQPLFDEKLTF-PQLKELKLSRLHKVQHLWKENDESNKAFANLK-SLEIFECSKL-QKLVPASWHLENL  294 (352)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l-~~l~~~~~~~~~L  294 (352)
                      ..++........       ... -.+..+.+..|+.++++.....   . ..... .+.+.+|+.+ ..+..-......+
T Consensus       335 ~~l~~~~l~~~~-------~~~~d~~~~~~~~~~~~l~~~~l~~~---~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l  403 (482)
T KOG1947|consen  335 PSLTDLSLSGLL-------TLTSDDLAELILRSCPKLTDLSLSYC---G-ISDLGLELSLRGCPNLTESLELRLCRSDSL  403 (482)
T ss_pred             ccHHHHHHHHhh-------ccCchhHhHHHHhcCCCcchhhhhhh---h-ccCcchHHHhcCCcccchHHHHHhccCCcc
Confidence            445544332111       011 1444555555555544432221   1 22222 3455666666 2222222233348


Q ss_pred             cEEeecCCccccccccccccCccccccEEEEecccccceec
Q 044585          295 EALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII  335 (352)
Q Consensus       295 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~  335 (352)
                      +.|.+..|...++.........+..+..+++.+|+.+....
T Consensus       404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             ceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence            89999888877666433222226778888888888776544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=8e-10  Score=93.85  Aligned_cols=188  Identities=16%  Similarity=0.175  Sum_probs=122.1

Q ss_pred             CccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccC
Q 044585           97 NLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFT  176 (352)
Q Consensus        97 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  176 (352)
                      .|++++++.. .++......++..|++|+.|.+.|...-+.+..         .++ .-.+|+.|+++.|.+++......
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~---------~iA-kN~~L~~lnlsm~sG~t~n~~~l  254 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN---------TIA-KNSNLVRLNLSMCSGFTENALQL  254 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHH---------HHh-ccccceeeccccccccchhHHHH
Confidence            4888888775 555544445677888888888888654333211         111 56688999999988887653332


Q ss_pred             CceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCc-cc--hhhhhcccCCCCCcccccCCcceeeccccc
Q 044585          177 GNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTS-EE--NFLLAHQVQPLFDEKLTFPQLKELKLSRLH  251 (352)
Q Consensus       177 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~-l~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  251 (352)
                       .+.++..|.+|.+++|-..+..+....++--++|+.|.  .|.. +.  ++..-         ...+|+|.+||+++|.
T Consensus       255 -l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL---------~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  255 -LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL---------VRRCPNLVHLDLSDSV  324 (419)
T ss_pred             -HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH---------HHhCCceeeecccccc
Confidence             46678899999999996655543333443447777776  3322 11  11111         2357899999999988


Q ss_pred             ccccccccccccccccCCcceEEEecCCCcc-cccCCccCCCCCcEEeecCCcccccc
Q 044585          252 KVQHLWKENDESNKAFANLKSLEIFECSKLQ-KLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       252 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      .++.--...+   ..++.|++|.++.|-.+- .....+...|+|.+|++.+|-.-+.+
T Consensus       325 ~l~~~~~~~~---~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~m  379 (419)
T KOG2120|consen  325 MLKNDCFQEF---FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTM  379 (419)
T ss_pred             ccCchHHHHH---HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHH
Confidence            8776332333   578999999999886542 11125678899999999888554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.61  E-value=4.1e-09  Score=94.93  Aligned_cols=90  Identities=16%  Similarity=0.022  Sum_probs=53.6

Q ss_pred             ccCCcceeeccccccccccccccc-ccccccCCcceEEEecCCCccc-----ccCCc-cCCCCCcEEeecCCcccccc--
Q 044585          238 TFPQLKELKLSRLHKVQHLWKEND-ESNKAFANLKSLEIFECSKLQK-----LVPAS-WHLENLEALKVSKCHRLINL--  308 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~~--  308 (352)
                      .+++|+.|++++| .++......+ .....+++|+.|++++|. ++.     +...+ ...+.|++|++.+|. +++.  
T Consensus       191 ~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~  267 (319)
T cd00116         191 ANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGA  267 (319)
T ss_pred             hCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHH
Confidence            3468999999986 3332211111 001467899999999984 442     11111 124799999998884 3311  


Q ss_pred             -ccccccCccccccEEEEecccc
Q 044585          309 -LTLSTSRSLIILQSMTIADCKR  330 (352)
Q Consensus       309 -~~~~~~~~l~~L~~L~i~~c~~  330 (352)
                       ........+++|+.++++++.-
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCC
Confidence             1112344457899999988743

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.1e-09  Score=93.08  Aligned_cols=143  Identities=15%  Similarity=0.194  Sum_probs=87.1

Q ss_pred             CceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcc
Q 044585           32 KLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSS  111 (352)
Q Consensus        32 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~  111 (352)
                      .|++|||++            .+....++......+..|+.|.+.+.. +.+ +....++  .-.+|+.|++++|..++.
T Consensus       186 Rlq~lDLS~------------s~it~stl~~iLs~C~kLk~lSlEg~~-LdD-~I~~~iA--kN~~L~~lnlsm~sG~t~  249 (419)
T KOG2120|consen  186 RLQHLDLSN------------SVITVSTLHGILSQCSKLKNLSLEGLR-LDD-PIVNTIA--KNSNLVRLNLSMCSGFTE  249 (419)
T ss_pred             hhHHhhcch------------hheeHHHHHHHHHHHHhhhhccccccc-cCc-HHHHHHh--ccccceeeccccccccch
Confidence            488888883            123333444445567788888888766 433 1111122  346899999999988887


Q ss_pred             cCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeec
Q 044585          112 AIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIE  191 (352)
Q Consensus       112 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~  191 (352)
                      ....-++.+|+.|.+|.+++|....+....        .++.--++|+.|+++++..--....-..-...+|+|.+|+++
T Consensus       250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  250 NALQLLLSSCSRLDELNLSWCFLFTEKVTV--------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             hHHHHHHHhhhhHhhcCchHhhccchhhhH--------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence            665566788999999999998766543111        111134578888888775321111111123457777777777


Q ss_pred             cCCCCcc
Q 044585          192 NCPDMET  198 (352)
Q Consensus       192 ~c~~l~~  198 (352)
                      +|..++.
T Consensus       322 D~v~l~~  328 (419)
T KOG2120|consen  322 DSVMLKN  328 (419)
T ss_pred             cccccCc
Confidence            7766553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.47  E-value=5.1e-08  Score=78.87  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=9.0

Q ss_pred             CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEcc
Q 044585           95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRN  131 (352)
Q Consensus        95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  131 (352)
                      +++|+.|.++++ .+.... ......+++|++|.+++
T Consensus        63 L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   63 LPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -TT--EEE--SS----S-C-HHHHHH-TT--EEE-TT
T ss_pred             hhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcC
Confidence            445555555554 233321 11112345555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.44  E-value=1.9e-08  Score=88.75  Aligned_cols=85  Identities=19%  Similarity=0.266  Sum_probs=66.5

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS  314 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~  314 (352)
                      +..+|+|+.|++++ +.++.+....+   ....+++.|.+..+ +++.+.. -+..++.|++|++.++ +++.+.+ +.+
T Consensus       270 f~~L~~L~~lnlsn-N~i~~i~~~aF---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~-~aF  342 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSN-NKITRIEDGAF---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAP-GAF  342 (498)
T ss_pred             HhhcccceEeccCC-Cccchhhhhhh---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEec-ccc
Confidence            55678999999999 78888888888   78889999999886 5555432 3567899999999655 6777654 467


Q ss_pred             CccccccEEEEec
Q 044585          315 RSLIILQSMTIAD  327 (352)
Q Consensus       315 ~~l~~L~~L~i~~  327 (352)
                      ..+.+|..|.+-.
T Consensus       343 ~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  343 QTLFSLSTLNLLS  355 (498)
T ss_pred             cccceeeeeehcc
Confidence            7888888888865

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.36  E-value=1.6e-06  Score=78.86  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             ccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccc-cccccccccCccccccEEEEeccccc
Q 044585          266 AFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRL-INLLTLSTSRSLIILQSMTIADCKRI  331 (352)
Q Consensus       266 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~l~~L~~L~i~~c~~l  331 (352)
                      .+++|++|.+.+|..+ .+|..  -.++|+.|++..+... ..++...++.   ++ .|.+.+|..+
T Consensus       154 LPsSLk~L~Is~c~~i-~LP~~--LP~SLk~L~ls~n~~~sLeI~~~sLP~---nl-~L~f~n~lkL  213 (426)
T PRK15386        154 ISPSLKTLSLTGCSNI-ILPEK--LPESLQSITLHIEQKTTWNISFEGFPD---GL-DIDLQNSVLL  213 (426)
T ss_pred             cCCcccEEEecCCCcc-cCccc--ccccCcEEEecccccccccCccccccc---cc-Eechhhhccc
Confidence            3467888888887644 34433  2357888887654211 1121222332   24 6777777554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.26  E-value=6.3e-07  Score=72.54  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=10.8

Q ss_pred             CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      +++|++|+++++ .+........+..+++|+.|++.+|+
T Consensus        87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence            444555555444 23332222223344445555544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.18  E-value=1.3e-07  Score=90.17  Aligned_cols=222  Identities=19%  Similarity=0.212  Sum_probs=113.8

Q ss_pred             CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC-CCcceeeeeccccccccccCCCCcccCeeccccccccccc
Q 044585           94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC-DLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRF  172 (352)
Q Consensus        94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  172 (352)
                      .+++|+.|.+.+|..+...........+++|++|++++| ..........    .. ... .+++|+.|++..+..+.+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~~-~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL----LL-LLS-ICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh----hh-hhh-hcCCcCccchhhhhccCch
Confidence            367788888888877665333344567788888888773 2222211000    00 111 4577788888777655443


Q ss_pred             cccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccccCCcceeecccc
Q 044585          173 CNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL  250 (352)
Q Consensus       173 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  250 (352)
                      .... ....+++|+.|.+.+|..+++..-..++..+++|++|+  .|..++.......       ...+++++.|.+..+
T Consensus       260 ~l~~-l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-------~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  260 GLSA-LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-------LKNCPNLRELKLLSL  331 (482)
T ss_pred             hHHH-HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-------HHhCcchhhhhhhhc
Confidence            2211 12236788888877787666555556666777788777  5666533211110       123555555554443


Q ss_pred             c---cccccccccccccccc--CCcceEEEecCCCcccccCCccCCCCCc-EEeecCCccccccccccccCccccccEEE
Q 044585          251 H---KVQHLWKENDESNKAF--ANLKSLEIFECSKLQKLVPASWHLENLE-ALKVSKCHRLINLLTLSTSRSLIILQSMT  324 (352)
Q Consensus       251 ~---~l~~l~~~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~  324 (352)
                      .   .++.......   ...  ..+..+.+.+|++++.+........... .+.+.+|+.++ ............++.|+
T Consensus       332 ~~c~~l~~~~l~~~---~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~  407 (482)
T KOG1947|consen  332 NGCPSLTDLSLSGL---LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLN  407 (482)
T ss_pred             CCCccHHHHHHHHh---hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhccCCccceEe
Confidence            2   2333322211   111  1444455555555544322111122222 45556666663 21112223333378888


Q ss_pred             Eecccccce
Q 044585          325 IADCKRIEE  333 (352)
Q Consensus       325 i~~c~~l~~  333 (352)
                      +..|..++.
T Consensus       408 l~~~~~~t~  416 (482)
T KOG1947|consen  408 LSDCRLVTD  416 (482)
T ss_pred             cccCccccc
Confidence            888875544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.95  E-value=1.9e-05  Score=52.23  Aligned_cols=60  Identities=32%  Similarity=0.434  Sum_probs=36.3

Q ss_pred             CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      |+|++|+++++. ++.++.+. +.  .+++|++|++++| .+....+ ..+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~-l~~i~~~~-f~--~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPDS-FS--NLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSST-ESEECTTT-TT--TGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCC-CCccCHHH-Hc--CCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence            456677777664 66655443 32  4667777777765 4554433 336667777777777653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.89  E-value=2.4e-05  Score=51.71  Aligned_cols=57  Identities=28%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             CcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCC
Q 044585          241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKC  302 (352)
Q Consensus       241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c  302 (352)
                      +|++|+++++ .++.++...+   ..+++|++|+++++ .++.++. .+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTTTT---TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            4444455442 4444444444   34444444444433 3333332 3344444444444443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=5.5e-06  Score=70.96  Aligned_cols=196  Identities=16%  Similarity=0.143  Sum_probs=109.0

Q ss_pred             CCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCC
Q 044585           29 STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTN  108 (352)
Q Consensus        29 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~  108 (352)
                      .+..++.+|+..+.++.|.           ++.....++|.|+.|+++.+. +.. +.+. +|. ...+|+.|.+.|. +
T Consensus        69 ~~~~v~elDL~~N~iSdWs-----------eI~~ile~lP~l~~LNls~N~-L~s-~I~~-lp~-p~~nl~~lVLNgT-~  132 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWS-----------EIGAILEQLPALTTLNLSCNS-LSS-DIKS-LPL-PLKNLRVLVLNGT-G  132 (418)
T ss_pred             HhhhhhhhhcccchhccHH-----------HHHHHHhcCccceEeeccCCc-CCC-cccc-Ccc-cccceEEEEEcCC-C
Confidence            4667777777765555553           122223478999999999877 532 2233 332 4679999999886 4


Q ss_pred             CcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceE
Q 044585          109 MSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENL  188 (352)
Q Consensus       109 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  188 (352)
                      +.-....+.+..+|.+++|+++.++ +..+ .+     ..+.+.+..+.++++++..|+..... ..+.....||++..+
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~N~-~rq~-n~-----Dd~c~e~~s~~v~tlh~~~c~~~~w~-~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSDNS-LRQL-NL-----DDNCIEDWSTEVLTLHQLPCLEQLWL-NKNKLSRIFPNVNSV  204 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhccch-hhhh-cc-----ccccccccchhhhhhhcCCcHHHHHH-HHHhHHhhcccchhe
Confidence            4322233445678888999888763 1111 00     00000113556777888777643311 111134468899999


Q ss_pred             eeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccc
Q 044585          189 TIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHL  256 (352)
Q Consensus       189 ~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  256 (352)
                      .+..|+ +++...+.-...+|.+..|. ..+++...       ..+.++..||.|+.|++.+.+-...+
T Consensus       205 ~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idsw-------asvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  205 FVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSW-------ASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             eeecCc-ccchhhcccCCCCCcchhhhhcccccccH-------HHHHHHcCCchhheeeccCCcccccc
Confidence            988884 33222222223445555454 44444321       12233567888888888876554433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=9.9e-06  Score=79.61  Aligned_cols=108  Identities=18%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             CCccEEeccccccce-EeccCCC-CCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            7 PSLEQVSMTHCPNMK-TFSRGIS-STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~-~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+|++|++.|...+. ..+..++ .+|+|+.|.+.+-            .....++...-.+||+|+.|+++++. ++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~------------~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR------------QFDNDDFSQLCASFPNLRSLDISGTN-ISNL  188 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc------------eecchhHHHHhhccCccceeecCCCC-ccCc
Confidence            356666666643322 2232222 4666666666631            01111122222356666666666665 5543


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                       .|.    +.++||+.|.+.+-. +........+-.+++|+.||++.-.
T Consensus       189 -~GI----S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  189 -SGI----SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             -HHH----hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence             222    356666666666542 2222222334556666666666533

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.69  E-value=0.00016  Score=66.01  Aligned_cols=139  Identities=19%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             hhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCc-ccCeeccccccccccccccCCceeeccCcceEeeccCCCC
Q 044585          118 LRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFP-RLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDM  196 (352)
Q Consensus       118 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l  196 (352)
                      +..+++++.|++++| .++.++              .+| +|++|.+.+|..++.++..     .+++|+.|.+.+|..+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP--------------~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L  107 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP--------------VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEI  107 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC--------------CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCcccc
Confidence            345677888888877 454443              233 6777777777666554321     1346777777766544


Q ss_pred             cccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEe
Q 044585          197 ETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIF  276 (352)
Q Consensus       197 ~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~  276 (352)
                      ..+                                       .++|+.|++.+ +....+.       ..+++|+.|.+.
T Consensus       108 ~sL---------------------------------------P~sLe~L~L~~-n~~~~L~-------~LPssLk~L~I~  140 (426)
T PRK15386        108 SGL---------------------------------------PESVRSLEIKG-SATDSIK-------NVPNGLTSLSIN  140 (426)
T ss_pred             ccc---------------------------------------ccccceEEeCC-CCCcccc-------cCcchHhheecc
Confidence            332                                       23566666653 2322222       234567777775


Q ss_pred             cCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecc
Q 044585          277 ECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADC  328 (352)
Q Consensus       277 ~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  328 (352)
                      ++...........-.++|++|++.+|..+. . +..++   .+|+.|.+..+
T Consensus       141 ~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-L-P~~LP---~SLk~L~ls~n  187 (426)
T PRK15386        141 SYNPENQARIDNLISPSLKTLSLTGCSNII-L-PEKLP---ESLQSITLHIE  187 (426)
T ss_pred             ccccccccccccccCCcccEEEecCCCccc-C-ccccc---ccCcEEEeccc
Confidence            432211111011134699999999998653 3 22344   35888888764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.67  E-value=2.7e-05  Score=72.42  Aligned_cols=171  Identities=19%  Similarity=0.213  Sum_probs=83.7

Q ss_pred             CCCceEEEecccccCcceeecCccchhhhhhceeeeccC-ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCC
Q 044585           30 TPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFR-DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTN  108 (352)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~  108 (352)
                      ...++.|++.              +..+..++.....+. +|+.|+++++. +..++...    +.+++|+.|.+++| .
T Consensus       115 ~~~l~~L~l~--------------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~----~~l~~L~~L~l~~N-~  174 (394)
T COG4886         115 LTNLTSLDLD--------------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL----RNLPNLKNLDLSFN-D  174 (394)
T ss_pred             ccceeEEecC--------------CcccccCccccccchhhcccccccccc-hhhhhhhh----hccccccccccCCc-h
Confidence            4556666666              334445555555553 66666666655 55432222    34666667766666 3


Q ss_pred             CcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceE
Q 044585          109 MSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENL  188 (352)
Q Consensus       109 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  188 (352)
                      +...++.  ....++|+.|+++++ .+..++...+          ....|+++.+.+...++...    .+..+.++..+
T Consensus       175 l~~l~~~--~~~~~~L~~L~ls~N-~i~~l~~~~~----------~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l  237 (394)
T COG4886         175 LSDLPKL--LSNLSNLNNLDLSGN-KISDLPPEIE----------LLSALEELDLSNNSIIELLS----SLSNLKNLSGL  237 (394)
T ss_pred             hhhhhhh--hhhhhhhhheeccCC-ccccCchhhh----------hhhhhhhhhhcCCcceecch----hhhhccccccc
Confidence            4443321  114566666666664 3344332210          22235666555443222111    23334444545


Q ss_pred             eeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccc
Q 044585          189 TIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL  250 (352)
Q Consensus       189 ~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  250 (352)
                      .+.+. .+..+ +.. ...+++++.|+ .++.+..+..          ++...+++.|++++.
T Consensus       238 ~l~~n-~~~~~-~~~-~~~l~~l~~L~~s~n~i~~i~~----------~~~~~~l~~L~~s~n  287 (394)
T COG4886         238 ELSNN-KLEDL-PES-IGNLSNLETLDLSNNQISSISS----------LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccCCc-eeeec-cch-hccccccceecccccccccccc----------ccccCccCEEeccCc
Confidence            43332 22221 122 22556666666 5555555433          134567777777773

>PLN03150 hypothetical protein; Provisional

Probab=97.65  E-value=7.2e-05  Score=73.50  Aligned_cols=73  Identities=22%  Similarity=0.270  Sum_probs=43.9

Q ss_pred             hhceeeeccCccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce
Q 044585           59 KCYEVMIGFRDIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE  137 (352)
Q Consensus        59 ~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~  137 (352)
                      .+|..+..+++|+.|+++++. +. .++...    +.+++|+.|++++| ++....|.. +..+++|+.|++++|.....
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNS-IRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCc-ccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCccccc
Confidence            455566677777777777665 33 323222    45677777777776 455444433 55677777777777654333


Q ss_pred             e
Q 044585          138 V  138 (352)
Q Consensus       138 ~  138 (352)
                      +
T Consensus       506 i  506 (623)
T PLN03150        506 V  506 (623)
T ss_pred             C
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=5.4e-06  Score=81.43  Aligned_cols=62  Identities=19%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585           68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                      .+|++|+++|...+...|... +.. .||+|++|.+.+- .+....-.....++|+|..||++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~k-ig~-~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T  183 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKK-IGT-MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT  183 (699)
T ss_pred             HhhhhcCccccchhhccHHHH-Hhh-hCcccceEEecCc-eecchhHHHHhhccCccceeecCCC
Confidence            456666666555444444322 221 4566666666552 1211111122345566666666653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.55  E-value=2.5e-06  Score=74.42  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             cccCCcceeeccccccccccccccc--ccccccCCcceEEEecCCCccc-----ccCCccCCCCCcEEeecCCcc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKEND--ESNKAFANLKSLEIFECSKLQK-----LVPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~--~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~  304 (352)
                      ..|++|++|.+++|.- .+-...++  ++....|+|++|.+.+|. ++.     +.......|.|+.|.+.+|+.
T Consensus       238 ~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4456777777777632 21100000  001346777777777663 221     111223466777777766643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.54  E-value=6.8e-05  Score=45.73  Aligned_cols=37  Identities=14%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             CCccEEeccccccceEeccCCCCCCCceEEEecccccC
Q 044585            7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEG   44 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~   44 (352)
                      ++|++|++.+| .++++|..+..+++|++|++++|.+.
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCC
Confidence            57888888887 77777776778888888888865443

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.53  E-value=3e-05  Score=66.68  Aligned_cols=85  Identities=21%  Similarity=0.261  Sum_probs=46.5

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRS  316 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  316 (352)
                      +.+++|+.|++++ +.+..+....    ..+.+.++|.+.++ .++.+. ++..+-+|..|+++++ +++.+-......+
T Consensus       326 a~L~~L~~LDLS~-N~Ls~~~Gwh----~KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~  397 (490)
T KOG1259|consen  326 AELPQLQLLDLSG-NLLAECVGWH----LKLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGN  397 (490)
T ss_pred             hhcccceEeeccc-chhHhhhhhH----hhhcCEeeeehhhh-hHhhhh-hhHhhhhheecccccc-chhhHHHhccccc
Confidence            3456666666666 3444443222    24556666666654 344442 4455666777777554 3343333344566


Q ss_pred             cccccEEEEeccc
Q 044585          317 LIILQSMTIADCK  329 (352)
Q Consensus       317 l~~L~~L~i~~c~  329 (352)
                      +|.|+.+.+.+.|
T Consensus       398 LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  398 LPCLETLRLTGNP  410 (490)
T ss_pred             ccHHHHHhhcCCC
Confidence            6777777666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.45  E-value=9.8e-06  Score=70.83  Aligned_cols=40  Identities=15%  Similarity=0.083  Sum_probs=23.7

Q ss_pred             cCCcceeeccccccccccccccccc-ccccCCcceEEEecCC
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDES-NKAFANLKSLEIFECS  279 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~  279 (352)
                      .|+|+.|.+.++ .++.-....+.. ....|.|+.|++.+|+
T Consensus       269 ~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  269 APSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             CCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            688999998885 333211110000 0347888888888874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.21  E-value=5.5e-05  Score=65.08  Aligned_cols=128  Identities=22%  Similarity=0.324  Sum_probs=86.1

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      .+.|+.|++++| .++.+..+..-.|.+++|+++++.+..              +-. ...+++|+.|+++++. ++..-
T Consensus       283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~--------------v~n-La~L~~L~~LDLS~N~-Ls~~~  345 (490)
T KOG1259|consen  283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRT--------------VQN-LAELPQLQLLDLSGNL-LAECV  345 (490)
T ss_pred             Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceee--------------ehh-hhhcccceEeecccch-hHhhh
Confidence            467888999998 788887777789999999999532211              111 3357889999999876 55421


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID  165 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  165 (352)
                      .-.    ..+-|++.|.+.++ .+...   +-+.++-+|..|++++++ ++.+-...       -|+ .+|.|+.+.+.+
T Consensus       346 Gwh----~KLGNIKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV~-------~IG-~LPCLE~l~L~~  408 (490)
T KOG1259|consen  346 GWH----LKLGNIKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSNQ-IEELDEVN-------HIG-NLPCLETLRLTG  408 (490)
T ss_pred             hhH----hhhcCEeeeehhhh-hHhhh---hhhHhhhhheeccccccc-hhhHHHhc-------ccc-cccHHHHHhhcC
Confidence            111    24668899999886 34443   226678889999999864 33321111       223 899999988877


Q ss_pred             cc
Q 044585          166 LP  167 (352)
Q Consensus       166 ~~  167 (352)
                      .|
T Consensus       409 NP  410 (490)
T KOG1259|consen  409 NP  410 (490)
T ss_pred             CC
Confidence            65

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.98  E-value=0.00035  Score=64.96  Aligned_cols=174  Identities=22%  Similarity=0.277  Sum_probs=117.2

Q ss_pred             cCCccEEeccccccceEeccCCCCCC-CceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTP-KLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      ++.++.|.+.++ .+..++....... +|+.|+++              +..+..+|..+..+++|+.|+++++. +.++
T Consensus       115 ~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~--------------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l  178 (394)
T COG4886         115 LTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLS--------------DNKIESLPSPLRNLPNLKNLDLSFND-LSDL  178 (394)
T ss_pred             ccceeEEecCCc-ccccCccccccchhhccccccc--------------ccchhhhhhhhhccccccccccCCch-hhhh
Confidence            467889999887 7888888777774 99999999              45667777777899999999999998 7775


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      +...    +..++|+.|.++++ .+...++.  ......|++|.+.++..++......           .+.++..+.+.
T Consensus       179 ~~~~----~~~~~L~~L~ls~N-~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~-----------~~~~l~~l~l~  240 (394)
T COG4886         179 PKLL----SNLSNLNNLDLSGN-KISDLPPE--IELLSALEELDLSNNSIIELLSSLS-----------NLKNLSGLELS  240 (394)
T ss_pred             hhhh----hhhhhhhheeccCC-ccccCchh--hhhhhhhhhhhhcCCcceecchhhh-----------hcccccccccC
Confidence            5543    25789999999997 56665532  2355669999999875444332222           44455555533


Q ss_pred             cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE  221 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~  221 (352)
                      +.. +..+..   ....+++++.|.++++ .+.++..   .....+++.|+ ..+.+.
T Consensus       241 ~n~-~~~~~~---~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         241 NNK-LEDLPE---SIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             Cce-eeeccc---hhccccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence            322 222111   4566778999988876 4555422   33667777777 444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.98  E-value=0.0011  Score=40.43  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=23.6

Q ss_pred             CCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585          268 ANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       268 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      ++|++|+++++ +++.+++.+..+++|+.|+++++ .++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            35667777766 56666655667777777777666 34444

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.00025  Score=61.06  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=30.8

Q ss_pred             cCCcceeecccccccccccccccccccccCCcceEEEecCCCccccc--CCccCCCCCcEEeecCCcccccc
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      ||++..+-+..|+.-+--...+.   ..+|.+-.|+++.. ++.++.  +.+..+++|+.|.+.+.|-.+.+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~s---e~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGS---EPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cccchheeeecCcccchhhcccC---CCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            56666666665533221111222   24444444544432 222221  23456666666666666554443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.93  E-value=3.3e-05  Score=71.80  Aligned_cols=102  Identities=21%  Similarity=0.270  Sum_probs=53.2

Q ss_pred             CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      -.|+.+.+..+ .+..+|..+..+..|.++||+.+.              +..+|..+..+| |+.|.+++++ ++.++.
T Consensus        98 ~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq--------------lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~  160 (722)
T KOG0532|consen   98 VSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ--------------LSHLPDGLCDLP-LKVLIVSNNK-LTSLPE  160 (722)
T ss_pred             HHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch--------------hhcCChhhhcCc-ceeEEEecCc-cccCCc
Confidence            34455555554 566677767777777777777432              222333322222 5555555554 555555


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                      ++    +..++|.+|+++.| ++...+  ..+..+.+|+.|.++.+
T Consensus       161 ~i----g~~~tl~~ld~s~n-ei~slp--sql~~l~slr~l~vrRn  199 (722)
T KOG0532|consen  161 EI----GLLPTLAHLDVSKN-EIQSLP--SQLGYLTSLRDLNVRRN  199 (722)
T ss_pred             cc----ccchhHHHhhhhhh-hhhhch--HHhhhHHHHHHHHHhhh
Confidence            44    44555666666555 343332  22445555555555543

>PLN03150 hypothetical protein; Provisional

Probab=96.82  E-value=0.0017  Score=63.95  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=69.2

Q ss_pred             ccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585           69 DIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK  147 (352)
Q Consensus        69 ~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  147 (352)
                      .++.|+|+++. +. .++...    ..+++|+.|++++| .+....|.. +..+++|+.|++++|.....++....    
T Consensus       419 ~v~~L~L~~n~-L~g~ip~~i----~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~----  487 (623)
T PLN03150        419 FIDGLGLDNQG-LRGFIPNDI----SKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLG----  487 (623)
T ss_pred             EEEEEECCCCC-ccccCCHHH----hCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHh----
Confidence            47788888776 43 323222    46889999999988 565555543 67889999999998765444433211    


Q ss_pred             ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCC
Q 044585          148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDM  196 (352)
Q Consensus       148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l  196 (352)
                            .+++|+.|+++++.-...++...  ...+.++..+.+.+++.+
T Consensus       488 ------~L~~L~~L~Ls~N~l~g~iP~~l--~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        488 ------QLTSLRILNLNGNSLSGRVPAAL--GGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             ------cCCCCCEEECcCCcccccCChHH--hhccccCceEEecCCccc
Confidence                  68899999998765333333311  112346677777776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.81  E-value=0.0024  Score=52.10  Aligned_cols=63  Identities=16%  Similarity=0.170  Sum_probs=35.2

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      .+++|..|.++++. ++.+.... -  ..+++|..|.+.++ ++.......-+..||.|+.|.+-+++
T Consensus        62 ~l~rL~tLll~nNr-It~I~p~L-~--~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNR-ITRIDPDL-D--TFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             CccccceEEecCCc-ceeeccch-h--hhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc
Confidence            35667777777665 55543332 1  14566777777765 34433322224466777777776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.21  E-value=0.00012  Score=70.06  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=7.9

Q ss_pred             eeeccCcceEeeccC
Q 044585          179 IIELSELENLTIENC  193 (352)
Q Consensus       179 ~~~~~~L~~L~l~~c  193 (352)
                      +..+|.|+.|+++.+
T Consensus       183 Lqll~ale~LnLshN  197 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHN  197 (1096)
T ss_pred             HHHHHHhhhhccchh
Confidence            344555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.04  E-value=0.0018  Score=60.60  Aligned_cols=125  Identities=14%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             CcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccc
Q 044585          184 ELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDE  262 (352)
Q Consensus       184 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  262 (352)
                      -|+-|.+++. +++.+ |..+. ..+.|..|+ .++.+..++..         ++.+.+|+.|.+.. +.+.+++.+.  
T Consensus       144 pLkvli~sNN-kl~~l-p~~ig-~~~tl~~ld~s~nei~slpsq---------l~~l~slr~l~vrR-n~l~~lp~El--  208 (722)
T KOG0532|consen  144 PLKVLIVSNN-KLTSL-PEEIG-LLPTLAHLDVSKNEIQSLPSQ---------LGYLTSLRDLNVRR-NHLEDLPEEL--  208 (722)
T ss_pred             cceeEEEecC-ccccC-Ccccc-cchhHHHhhhhhhhhhhchHH---------hhhHHHHHHHHHhh-hhhhhCCHHH--
Confidence            4666666655 56665 66665 677888888 77777776665         35577888888888 6777777652  


Q ss_pred             cccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccc-cccCccccccEEEEecc
Q 044585          263 SNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTL-STSRSLIILQSMTIADC  328 (352)
Q Consensus       263 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~i~~c  328 (352)
                         ..-.|..|++++ .++..+|..+..+..|++|.+.+++ |+.=|.. .+.....-.++|++..|
T Consensus       209 ---~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  209 ---CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ---hCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence               344577788775 4888899888899999999995554 3332211 11122233567777777

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.00027  Score=60.25  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=68.8

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      +.+.++|+..|| .+.++.- ..+++.|++|.|+-++++.+.               .+..+.+|++|+|..+. +..+.
T Consensus        18 l~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSvNkIssL~---------------pl~rCtrLkElYLRkN~-I~sld   79 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSVNKISSLA---------------PLQRCTRLKELYLRKNC-IESLD   79 (388)
T ss_pred             HHHhhhhcccCC-CccHHHH-HHhcccceeEEeeccccccch---------------hHHHHHHHHHHHHHhcc-cccHH
Confidence            567889999999 7776632 357999999999944333322               12346789999998765 44321


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCc---hhhhcCCCCcEEEE
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPT---NLLRCLNNLRCLEV  129 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l  129 (352)
                      .-. .- .++|+|+.|+|..++......+.   .++..+|+|+.|+=
T Consensus        80 EL~-YL-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   80 ELE-YL-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             HHH-HH-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            110 11 26899999999887665554442   33567888888864

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=0.0011  Score=53.92  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=16.0

Q ss_pred             CcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585          155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                      .++|+.|++++|+.+++.-..  .+..+++|+.|.+++.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~--~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLA--CLLKLKNLRRLHLYDL  186 (221)
T ss_pred             ccchheeeccCCCeechhHHH--HHHHhhhhHHHHhcCc
Confidence            444455555544444432111  2334455555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.57  E-value=0.0073  Score=51.23  Aligned_cols=39  Identities=26%  Similarity=0.384  Sum_probs=17.9

Q ss_pred             CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      .+|+|++|.++++ .+.......-++.+.+|..|++..|.
T Consensus        89 ~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   89 KAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             hCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence            3455666655554 23222111223445555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.00074  Score=57.71  Aligned_cols=80  Identities=25%  Similarity=0.275  Sum_probs=46.8

Q ss_pred             cCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccc
Q 044585           67 FRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNA  146 (352)
Q Consensus        67 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  146 (352)
                      +.+.++|++++|. +.++....     .++.|+.|.++-+ .+....+   +..|+.|++|.|+.+. +.++-.+.    
T Consensus        18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~-I~sldEL~----   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNC-IESLDELE----   82 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcc-cccHHHHH----
Confidence            4566777777776 66654443     5677777777765 3444433   4477788888777643 33221111    


Q ss_pred             cccccCCCCcccCeecccc
Q 044585          147 KEEHIGPRFPRLNRLRLID  165 (352)
Q Consensus       147 ~~~~~~~~~~~L~~L~l~~  165 (352)
                         ++. .+|+|+.|.+..
T Consensus        83 ---YLk-nlpsLr~LWL~E   97 (388)
T KOG2123|consen   83 ---YLK-NLPSLRTLWLDE   97 (388)
T ss_pred             ---HHh-cCchhhhHhhcc
Confidence               111 566666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.68  E-value=0.012  Score=55.15  Aligned_cols=60  Identities=17%  Similarity=0.215  Sum_probs=27.5

Q ss_pred             eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      ...+++|++|+++++. ++.+....     .++.|+.|++.++ .+.....   +..+++|+.++++++.
T Consensus       114 l~~~~~L~~L~ls~N~-I~~i~~l~-----~l~~L~~L~l~~N-~i~~~~~---~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNK-ITKLEGLS-----TLTLLKELNLSGN-LISDISG---LESLKSLKLLDLSYNR  173 (414)
T ss_pred             hhhhhcchheeccccc-cccccchh-----hccchhhheeccC-cchhccC---CccchhhhcccCCcch
Confidence            3345555555555554 44432222     3444555555554 2333221   2234555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.64  E-value=0.011  Score=55.31  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+.+|+.|++.++ ++..+......+++|++|+++++.+....              . +..++.|+.|++.++. ++.+
T Consensus        93 ~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--------------~-l~~l~~L~~L~l~~N~-i~~~  155 (414)
T KOG0531|consen   93 KLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE--------------G-LSTLTLLKELNLSGNL-ISDI  155 (414)
T ss_pred             cccceeeeecccc-chhhcccchhhhhcchheecccccccccc--------------c-hhhccchhhheeccCc-chhc
Confidence            3555666666555 44444333445666666666633222211              0 1123446666666655 4432


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                      ..-     ..+++|+.+.+.++ .+....... ...+.+|+.+.+.++
T Consensus       156 ~~~-----~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  156 SGL-----ESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGN  196 (414)
T ss_pred             cCC-----ccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCC
Confidence            111     12555666666655 233322200 234555666666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.60  E-value=0.015  Score=49.36  Aligned_cols=38  Identities=21%  Similarity=0.199  Sum_probs=17.4

Q ss_pred             CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585           95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                      +++|++|.++++..-........+..+|+|++|.++++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            55666666655411111111122345566666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.20  E-value=0.0016  Score=62.73  Aligned_cols=33  Identities=21%  Similarity=0.490  Sum_probs=22.5

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecc
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTE   40 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~   40 (352)
                      +|.|+.|+|++| +++... .+..+++|+.|||+.
T Consensus       186 l~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy  218 (1096)
T KOG1859|consen  186 LPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY  218 (1096)
T ss_pred             HHHhhhhccchh-hhhhhH-HHHhccccccccccc
Confidence            467778888887 555443 345688888888884

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.15  E-value=0.038  Score=27.90  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=16.2

Q ss_pred             CccEEeccccccceEeccCCCC
Q 044585            8 SLEQVSMTHCPNMKTFSRGISS   29 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~~~~   29 (352)
                      +|++|++++| .++.+|+.|++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            5788899988 78888877543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=0.019  Score=47.00  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             CcceeecccccccccccccccccccccCCcceEEEecCCCccccc--CCccCCCCCcEEeecCCccccccccccccCccc
Q 044585          241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PASWHLENLEALKVSKCHRLINLLTLSTSRSLI  318 (352)
Q Consensus       241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  318 (352)
                      .++.++-+++ .+....-+.+   ..+++++.|.+.+|..+...-  .--+..++|+.|+|++|+++++-.. .....++
T Consensus       102 ~IeaVDAsds-~I~~eGle~L---~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYEGLEHL---RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLK  176 (221)
T ss_pred             eEEEEecCCc-hHHHHHHHHH---hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhh
Confidence            5677777774 3333333344   578899999999997655321  0113678999999999999999854 3456788


Q ss_pred             cccEEEEecccccce
Q 044585          319 ILQSMTIADCKRIEE  333 (352)
Q Consensus       319 ~L~~L~i~~c~~l~~  333 (352)
                      +|+.|.+++.+.+.+
T Consensus       177 nLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  177 NLRRLHLYDLPYVAN  191 (221)
T ss_pred             hhHHHHhcCchhhhc
Confidence            999999999876543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.24  E-value=0.44  Score=36.18  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=12.4

Q ss_pred             CCcceeecccccccccccccccccccccCCcceEEEe
Q 044585          240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIF  276 (352)
Q Consensus       240 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~  276 (352)
                      ++++.+.+.+  .+..+....+   ..++.|+.+.+.
T Consensus        58 ~~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~   89 (129)
T PF13306_consen   58 KSLESITFPN--NLKSIGDNAF---SNCTNLKNIDIP   89 (129)
T ss_dssp             TT-EEEEETS--TT-EE-TTTT---TT-TTECEEEET
T ss_pred             cccccccccc--cccccccccc---cccccccccccC
Confidence            3455555533  3333333333   334555555553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.09  E-value=0.081  Score=24.79  Aligned_cols=16  Identities=13%  Similarity=0.534  Sum_probs=7.9

Q ss_pred             CCccEEeccccccceEe
Q 044585            7 PSLEQVSMTHCPNMKTF   23 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l   23 (352)
                      ++|+.|+|.+| +++.+
T Consensus         1 ~~L~~L~l~~n-~L~~l   16 (17)
T PF13504_consen    1 PNLRTLDLSNN-RLTSL   16 (17)
T ss_dssp             TT-SEEEETSS---SSE
T ss_pred             CccCEEECCCC-CCCCC
Confidence            45666666666 35544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.10  E-value=0.41  Score=39.42  Aligned_cols=87  Identities=21%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCccccc--CCccCCCCCcEEeecCCccccccc--cc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV--PASWHLENLEALKVSKCHRLINLL--TL  311 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~--~~  311 (352)
                      +..+++|.+|.+.+ +.++.+.....   ..+|.|++|.+.++. +..+.  ..+..+|.|+.|.+-+++- +...  ..
T Consensus        60 lp~l~rL~tLll~n-NrIt~I~p~L~---~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv-~~k~~YR~  133 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNN-NRITRIDPDLD---TFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPV-EHKKNYRL  133 (233)
T ss_pred             CCCccccceEEecC-Ccceeeccchh---hhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCch-hcccCcee
Confidence            34567899999988 67787765544   578899999999863 44332  2456788999999966542 2221  12


Q ss_pred             cccCccccccEEEEecc
Q 044585          312 STSRSLIILQSMTIADC  328 (352)
Q Consensus       312 ~~~~~l~~L~~L~i~~c  328 (352)
                      .+...+|+|+.|+..+=
T Consensus       134 yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  134 YVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEEEecCcceEeehhhh
Confidence            35566788898888763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.39  E-value=0.046  Score=42.05  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CCCCCceEEEecccccCcceeecCccchhhhhhceeee-ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC
Q 044585           28 SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMI-GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC  106 (352)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c  106 (352)
                      ..-.+|...+++              +..++++|..+. .+|.++.|++.++. ++++|...    ..++.|+.|+++.+
T Consensus        50 ~~~~el~~i~ls--------------~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~----Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   50 SKGYELTKISLS--------------DNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL----AAMPALRSLNLRFN  110 (177)
T ss_pred             hCCceEEEEecc--------------cchhhhCCHHHhhccchhhhhhcchhh-hhhchHHH----hhhHHhhhcccccC
Confidence            456677777887              345555665543 56678888888776 77766653    34778888888876


Q ss_pred             CCCcccCCchhhhcCCCCcEEEEccC
Q 044585          107 TNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus       107 ~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                      +- .. .|..+++ +.+|-.|+..++
T Consensus       111 ~l-~~-~p~vi~~-L~~l~~Lds~~n  133 (177)
T KOG4579|consen  111 PL-NA-EPRVIAP-LIKLDMLDSPEN  133 (177)
T ss_pred             cc-cc-chHHHHH-HHhHHHhcCCCC
Confidence            42 22 2333233 666666666554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.36  E-value=0.14  Score=26.90  Aligned_cols=17  Identities=29%  Similarity=0.554  Sum_probs=10.6

Q ss_pred             CCCcEEeecCCcccccc
Q 044585          292 ENLEALKVSKCHRLINL  308 (352)
Q Consensus       292 ~~L~~L~l~~c~~l~~~  308 (352)
                      ++|++|++++|+++++.
T Consensus         2 ~~L~~L~l~~C~~itD~   18 (26)
T smart00367        2 PNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCEeCCCCCCCcCHH
Confidence            55666666666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=85.79  E-value=0.11  Score=39.96  Aligned_cols=57  Identities=23%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeec
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVS  300 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~  300 (352)
                      .+|.++.|++++ +++.++|.+ +   +.++.|+.|+++.++ +...|.-+..+.+|..|+..
T Consensus        75 kf~t~t~lNl~~-neisdvPeE-~---Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   75 KFPTATTLNLAN-NEISDVPEE-L---AAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             ccchhhhhhcch-hhhhhchHH-H---hhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence            356777777777 677777766 4   577777777777763 44444333334555555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.79  E-value=4.1  Score=30.70  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             chhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCC
Q 044585          202 NSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSK  280 (352)
Q Consensus       202 ~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~  280 (352)
                      ...+.++.+|+.+. . ..++.+....        +..+++|+.+.+.+  .+..+....+   ..+++|+.+.+.+  .
T Consensus         5 ~~~F~~~~~l~~i~~~-~~~~~I~~~~--------F~~~~~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~~--~   68 (129)
T PF13306_consen    5 NNAFYNCSNLESITFP-NTIKKIGENA--------FSNCTSLKSINFPN--NLTSIGDNAF---SNCKSLESITFPN--N   68 (129)
T ss_dssp             TTTTTT-TT--EEEET-ST--EE-TTT--------TTT-TT-SEEEESS--TTSCE-TTTT---TT-TT-EEEEETS--T
T ss_pred             HHHHhCCCCCCEEEEC-CCeeEeChhh--------cccccccccccccc--cccccceeee---ecccccccccccc--c
Confidence            34444666677665 2 1233222221        34566788888876  3777776666   5666788888865  3


Q ss_pred             cccccC-CccCCCCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585          281 LQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD  327 (352)
Q Consensus       281 l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  327 (352)
                      +..++. .+..+++|+.+.+..  +++.+.. ..+..+ +|+.+.+.+
T Consensus        69 ~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~-~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   69 LKSIGDNAFSNCTNLKNIDIPS--NITEIGS-SSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-EE-TTTTTT-TTECEEEETT--T-BEEHT-TTTTT--T--EEE-TT
T ss_pred             ccccccccccccccccccccCc--cccEEch-hhhcCC-CceEEEECC
Confidence            444443 345578888888843  3555533 345555 777777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.99  E-value=1.2  Score=38.48  Aligned_cols=148  Identities=18%  Similarity=0.164  Sum_probs=68.5

Q ss_pred             CCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCC-----------CCCC
Q 044585           28 SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPV-----------SFFN   96 (352)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~-----------~~l~   96 (352)
                      .+||+|+..+++.+-+..         ...+.+-..++....|++|.+++|. +..+..+. +..           ..-|
T Consensus        89 lkcp~l~~v~LSDNAfg~---------~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~r-igkal~~la~nKKaa~kp  157 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGS---------EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGR-IGKALFHLAYNKKAADKP  157 (388)
T ss_pred             hcCCcceeeeccccccCc---------ccchHHHHHHhcCCCceeEEeecCC-CCccchhH-HHHHHHHHHHHhhhccCC
Confidence            457777777777421110         0111122334456677777777665 54432221 210           1235


Q ss_pred             CccEEEEecCCCCcccCC---chhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccc--c
Q 044585           97 NLRQLAVDDCTNMSSAIP---TNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLK--R  171 (352)
Q Consensus        97 ~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~  171 (352)
                      .|+......+ .+.+.+.   ...++.-..|+++.+.++. +..- ....+. +... . .+.+|+.|++.+.....  .
T Consensus       158 ~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNg-Irpe-gv~~L~-~~gl-~-y~~~LevLDlqDNtft~~gS  231 (388)
T COG5238         158 KLEVVICGRN-RLENGSKELSAALLESHENLKEVKIQQNG-IRPE-GVTMLA-FLGL-F-YSHSLEVLDLQDNTFTLEGS  231 (388)
T ss_pred             CceEEEeccc-hhccCcHHHHHHHHHhhcCceeEEeeecC-cCcc-hhHHHH-HHHH-H-HhCcceeeeccccchhhhhH
Confidence            5666655544 2333221   1112333567777777643 2211 000000 0000 0 35577777776543211  1


Q ss_pred             ccccCCceeeccCcceEeeccC
Q 044585          172 FCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       172 ~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                      ..... ....++.|++|.+.+|
T Consensus       232 ~~La~-al~~W~~lrEL~lnDC  252 (388)
T COG5238         232 RYLAD-ALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHHHH-Hhcccchhhhccccch
Confidence            00111 3455678899999888

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.33  E-value=0.92  Score=23.64  Aligned_cols=21  Identities=14%  Similarity=0.556  Sum_probs=14.7

Q ss_pred             cCCccEEeccccccceEeccCC
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGI   27 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~   27 (352)
                      +++|++|++.+| .++.+|...
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHH
Confidence            467788888877 677776543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.33  E-value=0.92  Score=23.64  Aligned_cols=21  Identities=14%  Similarity=0.556  Sum_probs=14.7

Q ss_pred             cCCccEEeccccccceEeccCC
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGI   27 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~   27 (352)
                      +++|++|++.+| .++.+|...
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHH
Confidence            467788888877 677776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 39/278 (14%), Positives = 81/278 (29%), Gaps = 55/278 (19%)

Query: 88  QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLH------- 140
             +  +  ++L  L +D C+  ++    +++     ++ L +      E+          
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 141 ----LEELNAKE-----------EHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSEL 185
               LE LN              E I      L  +++ D   L+    F      L E 
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEF 248

Query: 186 ENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKEL 245
              ++     M     N V            +   E  +L               Q+++L
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA----------AQIRKL 298

Query: 246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSK------LQKLVPASWHLENLEALKV 299
            L             ++         +LE+ E         L+ L     + + L+ L++
Sbjct: 299 DLLYALLE------TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ---YCKQLKRLRI 349

Query: 300 SKCHRLINLLTLS---TSRSLIILQSMTIADCKRIEEI 334
            +      +       + R LI L       C+ +E +
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIAL----AQGCQELEYM 383

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 40/261 (15%), Positives = 78/261 (29%), Gaps = 84/261 (32%)

Query: 43  EGEHHWEG------NKLNSTIQKCYEVMIGFRDIEHL--QLSHFP--------RLREIWH 86
           +G   W+       +KL + I+    V +   +   +  +LS FP         L  IW 
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 87  G--QAVPVSFFNNLRQ--LAVDDCTNMSSAIPT-----------------NLLRCLNNLR 125
              ++  +   N L +  L        + +IP+                 +++   N  +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 126 CLEVRNCDLIEE--------VLHLEELNAKEEHIGPRFPRL--------NRLR------- 162
             +  +                HL+ +   E      F  +         ++R       
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 163 --------LIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNS----VVHVTTN 210
                   L  L   K +     N  +   L N  ++  P +E  +  S    ++ +   
Sbjct: 516 ASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

Query: 211 NKEPQKLTSEENFLLAH-QVQ 230
            ++      E  F  AH QVQ
Sbjct: 574 AED------EAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 67/235 (28%)

Query: 113 IPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRL-RLIDLPKLKR 171
           +       ++N  C +V+  D+ + +L  EE+    +HI      ++   RL        
Sbjct: 22  LSVFEDAFVDNFDCKDVQ--DMPKSILSKEEI----DHIIMSKDAVSGTLRLFWT----- 70

Query: 172 FCNFTGNIIE--LSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQV 229
             +    +++  + E+         + + F+ + +    T  ++P  +T         Q 
Sbjct: 71  LLSKQEEMVQKFVEEVLR------INYK-FLMSPI---KTEQRQPSMMTRMYI----EQR 116

Query: 230 QPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASW 289
             L+++   F +     +SRL     L +                      L +L PA  
Sbjct: 117 DRLYNDNQVFAKYN---VSRLQPYLKLRQ---------------------ALLELRPAKN 152

Query: 290 HLENLEALK-VSKCHRLINLLTLSTSRSLIILQSM-------TIADCKRIEEIIQ 336
            L  ++ +    K       + L    S  +   M        + +C   E +++
Sbjct: 153 VL--IDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 39/310 (12%), Positives = 91/310 (29%), Gaps = 54/310 (17%)

Query: 56  TIQKCYEVMIGFRDIEHLQLSHFPRL--REIWHGQAVPVSFFNNLRQLAVDDCTNMSSAI 113
            ++K   ++     +E L    +      +++ G +V +S    LR L      +   A 
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL--SGFWDAVPAY 280

Query: 114 PTNLLRCLNNLRCLEVRNCDLIEEVL--------HLEELNAKE-------EHIGPRFPRL 158
              +    + L  L +    +    L         L+ L   +       E +      L
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340

Query: 159 NRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLT 218
             LR+          N       L  +       CP +E+ +              +++T
Sbjct: 341 RELRVFPSEPFVMEPNVALTEQGLVSV----SMGCPKLESVLYFC-----------RQMT 385

Query: 219 SEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFA-------NLK 271
           +     +A             P +   +L  +      +   +  +  F        +L+
Sbjct: 386 NAALITIARN----------RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435

Query: 272 SLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLST-SRSLIILQSMTIADCKR 330
            L +      +       + + +E L V+      + L +         L+ + I DC  
Sbjct: 436 RLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG--DSDLGMHHVLSGCDSLRKLEIRDCPF 493

Query: 331 IEEIIQSPVA 340
            ++ + +  +
Sbjct: 494 GDKALLANAS 503

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 47/272 (17%), Positives = 85/272 (31%), Gaps = 51/272 (18%)

Query: 95  FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLH-----------LEE 143
           F N + L +  C   S+     +     NL+ L++R  D+ +   H           L  
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 144 LNAKE----------EHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC 193
           LN             E +  R P L  L+L     L++            +LE L     
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR---APQLEELGTGGY 245

Query: 194 PDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLS----- 248
                    S + V  +  +  +  S     +   +  ++       +L  L LS     
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS---VCSRLTTLNLSYATVQ 302

Query: 249 ---------RLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKV 299
                    +  K+Q LW  +   +     L S     C  L++L      +   E   +
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST----CKDLREL-----RVFPSEPFVM 353

Query: 300 SKCHRLINLLTLSTSRSLIILQSMTIADCKRI 331
                L     +S S     L+S+ +  C+++
Sbjct: 354 EPNVALTEQGLVSVSMGCPKLESV-LYFCRQM 384

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 37/266 (13%), Positives = 67/266 (25%), Gaps = 68/266 (25%)

Query: 56  TIQKCYEVMIG-----FRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMS 110
            I  CY V        F  +  ++L   P                     L  D      
Sbjct: 49  FIGNCYAVSPATVIRRFPKVRSVELKGKPHFA---------------DFNLVPDGWGGYV 93

Query: 111 SAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLK 170
                 +      L  + ++   + ++ L         E I   F     L       L 
Sbjct: 94  YPWIEAMSSSYTWLEEIRLKRMVVTDDCL---------ELIAKSFKNFKVL------VLS 138

Query: 171 RFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQ 230
               F+                        ++ +  +    +  ++L   E+ +      
Sbjct: 139 SCEGFS------------------------TDGLAAIAATCRNLKELDLRESDVDDVSGH 174

Query: 231 PLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFA----NLKSLEIFECSKLQKLVP 286
            L     T+  L  L +S L       + +  + +       NLKSL++     L+KL  
Sbjct: 175 WLSHFPDTYTSLVSLNISCLA-----SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT 229

Query: 287 ASWHLENLEALKVSKCHRLINLLTLS 312
                  LE L        +     S
Sbjct: 230 LLQRAPQLEELGTGGYTAEVRPDVYS 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.65
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.56
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.54
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.47
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.43
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.28
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.0
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.97
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.94
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.94
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.93
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.91
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.84
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	85.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	83.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.68

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=6e-21  Score=180.32  Aligned_cols=286  Identities=17%  Similarity=0.180  Sum_probs=155.3

Q ss_pred             CCccEEeccccccceEec-cCCCCCCCceEEEecccccCcceeecC---------c-cchhhhhhcee-eeccCccceeE
Q 044585            7 PSLEQVSMTHCPNMKTFS-RGISSTPKLYVVQVTEREEGEHHWEGN---------K-LNSTIQKCYEV-MIGFRDIEHLQ   74 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~---------~-~~~~~~~l~~~-~~~~~~L~~L~   74 (352)
                      +++++|++.+| .++.++ ..+..+++|++|+++++.+.......-         . .+..+..+|.. +..+++|++|+
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            46777777776 555553 455667777777777443222110000         0 01112222221 22344444444


Q ss_pred             eccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCC
Q 044585           75 LSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPR  154 (352)
Q Consensus        75 l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  154 (352)
                      ++++. +....... +  ..+++|++|+++++ .+....+. .+..+++|++|++++|. +..++.        ..+. .
T Consensus       111 Ls~n~-i~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--------~~l~-~  174 (477)
T 2id5_A          111 ISENK-IVILLDYM-F--QDLYNLKSLEVGDN-DLVYISHR-AFSGLNSLEQLTLEKCN-LTSIPT--------EALS-H  174 (477)
T ss_dssp             CTTSC-CCEECTTT-T--TTCTTCCEEEECCT-TCCEECTT-SSTTCTTCCEEEEESCC-CSSCCH--------HHHT-T
T ss_pred             CCCCc-cccCChhH-c--cccccCCEEECCCC-ccceeChh-hccCCCCCCEEECCCCc-CcccCh--------hHhc-c
Confidence            44443 32221111 1  23444444444444 23332221 13344455555554432 111110        0111 4


Q ss_pred             CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585          155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF  233 (352)
Q Consensus       155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~  233 (352)
                      +++|+.|++.++. +..+...  .+..+++|+.|++++|..+..+ +.... ...+|+.|+ ..+.++.++...      
T Consensus       175 l~~L~~L~l~~n~-i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~-~~~~L~~L~l~~n~l~~~~~~~------  243 (477)
T 2id5_A          175 LHGLIVLRLRHLN-INAIRDY--SFKRLYRLKVLEISHWPYLDTM-TPNCL-YGLNLTSLSITHCNLTAVPYLA------  243 (477)
T ss_dssp             CTTCCEEEEESCC-CCEECTT--CSCSCTTCCEEEEECCTTCCEE-CTTTT-TTCCCSEEEEESSCCCSCCHHH------
T ss_pred             cCCCcEEeCCCCc-CcEeChh--hcccCcccceeeCCCCcccccc-Ccccc-cCccccEEECcCCcccccCHHH------
Confidence            5566666665543 2222111  3455677777777777666554 33333 334677777 444555443221      


Q ss_pred             CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcccccccccc
Q 044585          234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLS  312 (352)
Q Consensus       234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~  312 (352)
                        +..+++|+.|+++++ .++.++...+   ..+++|+.|+++++. ++.+ +..+..+++|++|+++++ +++.++. .
T Consensus       244 --~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~  314 (477)
T 2id5_A          244 --VRHLVYLRFLNLSYN-PISTIEGSML---HELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE-S  314 (477)
T ss_dssp             --HTTCTTCCEEECCSS-CCCEECTTSC---TTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCG-G
T ss_pred             --hcCccccCeeECCCC-cCCccChhhc---cccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCH-h
Confidence              456789999999984 5777776666   688999999999884 5544 557788999999999777 6677644 4


Q ss_pred             ccCccccccEEEEeccc
Q 044585          313 TSRSLIILQSMTIADCK  329 (352)
Q Consensus       313 ~~~~l~~L~~L~i~~c~  329 (352)
                      .+..+++|+.|++.+++
T Consensus       315 ~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          315 VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             GBSCGGGCCEEECCSSC
T ss_pred             HcCCCcccCEEEccCCC
Confidence            56778999999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=6.5e-21  Score=178.91  Aligned_cols=300  Identities=13%  Similarity=0.128  Sum_probs=176.3

Q ss_pred             CCccEEeccccccceEe-ccCCCCCCCceEEEecccccCcce----eecC------c-cchhhhhh-ceeeeccCcccee
Q 044585            7 PSLEQVSMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHH----WEGN------K-LNSTIQKC-YEVMIGFRDIEHL   73 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~----~~~~------~-~~~~~~~l-~~~~~~~~~L~~L   73 (352)
                      ++|++|++.+| .++.+ +..+..+++|++|+++++.+....    +...      . .+..+..+ |..+..+++|++|
T Consensus        30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            56777777776 45544 455667777777777755332110    0000      0 01122222 4455667777777


Q ss_pred             EeccCCCcce-eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeee-eccc-------
Q 044585           74 QLSHFPRLRE-IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLH-LEEL-------  144 (352)
Q Consensus        74 ~l~~~~~l~~-~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~-------  144 (352)
                      ++++|. ++. .+....+  +.+++|++|++++| .+....+...+..+++|++|++++|......+. +...       
T Consensus       109 ~L~~n~-l~~~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          109 TLTQCN-LDGAVLSGNFF--KPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             ECTTSC-CBTHHHHSSTT--TTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             eCCCCC-CCccccCcccc--cCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            777776 442 1221101  35778888888877 455555544466788888888877653221110 0000       


Q ss_pred             -cc----ccc------------ccCCCCcccCeeccccccccc----------------cccccC---------------
Q 044585          145 -NA----KEE------------HIGPRFPRLNRLRLIDLPKLK----------------RFCNFT---------------  176 (352)
Q Consensus       145 -~~----~~~------------~~~~~~~~L~~L~l~~~~~l~----------------~~~~~~---------------  176 (352)
                       ..    ...            .+. .+++|+.|+++++.-..                .+....               
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  263 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD  263 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred             cccccCcccccchhhcccccccccc-ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence             00    000            001 23567777776652111                000000               


Q ss_pred             ---C--ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccc
Q 044585          177 ---G--NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL  250 (352)
Q Consensus       177 ---~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  250 (352)
                         .  .....++|+.|+++++ .+....+..+ ..+++|+.|+ ..+.++.+....        ++.+++|++|+++++
T Consensus       264 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          264 PDNFTFKGLEASGVKTCDLSKS-KIFALLKSVF-SHFTDLEQLTLAQNEINKIDDNA--------FWGLTHLLKLNLSQN  333 (455)
T ss_dssp             CCTTTTGGGTTSCCCEEECCSS-CCCEECTTTT-TTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECCSS
T ss_pred             CcccccccccccCceEEEecCc-cccccchhhc-ccCCCCCEEECCCCcccccChhH--------hcCcccCCEEECCCC
Confidence               0  0001257778888776 4555434444 4778888888 666666544322        456789999999995


Q ss_pred             cccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          251 HKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       251 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                       .++.+....+   ..+++|++|++++| .++.+ +..+..+++|++|+++++ +++.+++ ..+..+++|+.|++++++
T Consensus       334 -~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          334 -FLGSIDSRMF---ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             -CCCEECGGGG---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             -ccCCcChhHh---cCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence             6677765555   67899999999998 45555 567888999999999776 6777754 356788999999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=3.5e-20  Score=167.73  Aligned_cols=272  Identities=15%  Similarity=0.182  Sum_probs=152.0

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      ++++|++|++.++ .+..++. +..+++|++|++++|.+.              .++. +..+++|++|+++++. ++.+
T Consensus        42 ~l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~i~--------------~~~~-~~~l~~L~~L~L~~n~-i~~~  103 (347)
T 4fmz_A           42 ELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQIT--------------DISP-LSNLVKLTNLYIGTNK-ITDI  103 (347)
T ss_dssp             HHTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCC--------------CCGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred             hcccccEEEEeCC-ccccchh-hhhcCCccEEEccCCccc--------------cchh-hhcCCcCCEEEccCCc-ccCc
Confidence            4678888888887 5666653 667888888888854322              2222 4456667777776664 5443


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc------------ccccC
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK------------EEHIG  152 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~------------~~~~~  152 (352)
                      +. .    ..+++|++|++++| .+....+   +..+++|+.|++++|.....+..+......            ...+.
T Consensus       104 ~~-~----~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  174 (347)
T 4fmz_A          104 SA-L----QNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA  174 (347)
T ss_dssp             GG-G----TTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             hH-H----cCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhc
Confidence            21 1    24666666666665 3444322   345666666666666544433222100000            00011


Q ss_pred             CCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCC
Q 044585          153 PRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQP  231 (352)
Q Consensus       153 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~  231 (352)
                       .+++|+.|+++++. +..+.    .+..+++|+.|.++++ .+....+   ...+++|+.|+ ..+.++.+..      
T Consensus       175 -~l~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~------  238 (347)
T 4fmz_A          175 -NLTDLYSLSLNYNQ-IEDIS----PLASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDLSP------  238 (347)
T ss_dssp             -GCTTCSEEECTTSC-CCCCG----GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG------
T ss_pred             -cCCCCCEEEccCCc-ccccc----cccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCCcc------
Confidence             34444444444432 11111    1334455555555554 2332211   23455666665 4334433221      


Q ss_pred             CCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccc
Q 044585          232 LFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTL  311 (352)
Q Consensus       232 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~  311 (352)
                          +..+++|++|+++++ .++.++  .+   ..+++|+.|++++| .++.++ .+..+++|++|++++|. ++...+ 
T Consensus       239 ----~~~l~~L~~L~l~~n-~l~~~~--~~---~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-  304 (347)
T 4fmz_A          239 ----LANLSQLTWLEIGTN-QISDIN--AV---KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ-LGNEDM-  304 (347)
T ss_dssp             ----GTTCTTCCEEECCSS-CCCCCG--GG---TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCGGGH-
T ss_pred             ----hhcCCCCCEEECCCC-ccCCCh--hH---hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc-CCCcCh-
Confidence                355778888888885 555543  22   57888999999887 566664 45788899999998874 444433 


Q ss_pred             cccCccccccEEEEeccccccee
Q 044585          312 STSRSLIILQSMTIADCKRIEEI  334 (352)
Q Consensus       312 ~~~~~l~~L~~L~i~~c~~l~~~  334 (352)
                      ..+..+++|+.|++++|+ ++.+
T Consensus       305 ~~l~~l~~L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNH-ITDI  326 (347)
T ss_dssp             HHHHTCTTCSEEECCSSS-CCCC
T ss_pred             hHhhccccCCEEEccCCc-cccc
Confidence            245668889999999986 4443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=2.2e-20  Score=169.10  Aligned_cols=273  Identities=15%  Similarity=0.162  Sum_probs=175.9

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecC-c-------cchhhhhhceeeeccCccceeEe
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGN-K-------LNSTIQKCYEVMIGFRDIEHLQL   75 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~L~~L~l   75 (352)
                      ..+++|++|++.+| .++.++. +..+++|++|++++|.+........ .       .+..+..++. +..+++|++|++
T Consensus        63 ~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l  139 (347)
T 4fmz_A           63 EYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL  139 (347)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEEC
Confidence            35789999999998 7777776 7789999999999765444321000 0       0111222222 334455555555


Q ss_pred             ccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCC
Q 044585           76 SHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRF  155 (352)
Q Consensus        76 ~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (352)
                      ++|..+...+. .    ..+++|++|++++| .+....+   +..+++|++|++++|. +..++.          +. .+
T Consensus       140 ~~n~~~~~~~~-~----~~l~~L~~L~l~~~-~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~----------~~-~l  198 (347)
T 4fmz_A          140 GANHNLSDLSP-L----SNMTGLNYLTVTES-KVKDVTP---IANLTDLYSLSLNYNQ-IEDISP----------LA-SL  198 (347)
T ss_dssp             TTCTTCCCCGG-G----TTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECTTSC-CCCCGG----------GG-GC
T ss_pred             CCCCCcccccc-h----hhCCCCcEEEecCC-CcCCchh---hccCCCCCEEEccCCc-cccccc----------cc-CC
Confidence            55543332211 1    24556666666665 2333222   3456667777776653 222221          12 68


Q ss_pred             cccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCC
Q 044585          156 PRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFD  234 (352)
Q Consensus       156 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~  234 (352)
                      ++|+.|++.++. +..+.    .+..+++|+.|++++| .++.+.+   ...+++|+.|+ ..+.++.+.          
T Consensus       199 ~~L~~L~l~~n~-l~~~~----~~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~----------  259 (347)
T 4fmz_A          199 TSLHYFTAYVNQ-ITDIT----PVANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDIN----------  259 (347)
T ss_dssp             TTCCEEECCSSC-CCCCG----GGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCCG----------
T ss_pred             CccceeecccCC-CCCCc----hhhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCCh----------
Confidence            899999998764 33322    2567899999999998 5555433   45789999998 655665542          


Q ss_pred             cccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccccccc
Q 044585          235 EKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTS  314 (352)
Q Consensus       235 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  314 (352)
                      .+..+++|++|++++| .++.++.  +   ..+++|+.|++++|......+..+..+++|++|++++|+ ++.+++   .
T Consensus       260 ~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~  329 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSN-QISDISV--L---NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---L  329 (347)
T ss_dssp             GGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---G
T ss_pred             hHhcCCCcCEEEccCC-ccCCChh--h---cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---h
Confidence            1466899999999996 6666632  3   688999999999995433444556789999999999886 666644   5


Q ss_pred             CccccccEEEEeccc
Q 044585          315 RSLIILQSMTIADCK  329 (352)
Q Consensus       315 ~~l~~L~~L~i~~c~  329 (352)
                      ..+++|+.|++++|+
T Consensus       330 ~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          330 ASLSKMDSADFANQV  344 (347)
T ss_dssp             GGCTTCSEESSSCC-
T ss_pred             hhhhccceeehhhhc
Confidence            668899999999886

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=8.4e-20  Score=177.51  Aligned_cols=236  Identities=14%  Similarity=0.121  Sum_probs=120.2

Q ss_pred             eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCC-chhhhcCCCCcEEEEccCCCcceeeeec
Q 044585           64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIP-TNLLRCLNNLRCLEVRNCDLIEEVLHLE  142 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~  142 (352)
                      +..+++|++|+++++.....++... +  +.+++|++|++++| .+..... ...+..+++|++|++++|.. ..+..  
T Consensus       321 ~~~l~~L~~L~l~~n~~~~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~--  393 (606)
T 3t6q_A          321 ASNFPSLTHLSIKGNTKRLELGTGC-L--ENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKT--  393 (606)
T ss_dssp             GGGCTTCSEEECCSCSSCCBCCSST-T--TTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSC-EEECT--
T ss_pred             hhccCcCCEEECCCCCcccccchhh-h--hccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcC-CcCCH--
Confidence            3445555555555544221222221 1  23555555555555 2332210 11234555555555555432 11100  


Q ss_pred             cccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc
Q 044585          143 ELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE  221 (352)
Q Consensus       143 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~  221 (352)
                            ..+. .+++|+.|+++++.-....+. . .+..+++|+.|++++| .+....+..+ ..+++|+.|+ ..+.++
T Consensus       394 ------~~~~-~l~~L~~L~l~~n~l~~~~~~-~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          394 ------EAFK-ECPQLELLDLAFTRLKVKDAQ-S-PFQNLHLLKVLNLSHS-LLDISSEQLF-DGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             ------TTTT-TCTTCSEEECTTCCEECCTTC-C-TTTTCTTCCEEECTTC-CCBTTCTTTT-TTCTTCCEEECTTCBCG
T ss_pred             ------HHhc-CCccCCeEECCCCcCCCcccc-h-hhhCcccCCEEECCCC-ccCCcCHHHH-hCCCCCCEEECCCCCCC
Confidence                  0111 456666666665532211111 1 2445667777777766 3443323333 3567777776 544444


Q ss_pred             hhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecC
Q 044585          222 NFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSK  301 (352)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  301 (352)
                      ......     ...++.+++|++|++++| .++.++...+   ..+++|+.|+++++.-....|..+..+++| +|++++
T Consensus       463 ~~~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          463 KGNIQK-----TNSLQTLGRLEILVLSFC-DLSSIDQHAF---TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             GGEECS-----SCGGGGCTTCCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             cccccc-----chhhccCCCccEEECCCC-ccCccChhhh---ccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            321110     011455677788888774 5555554444   567778888887774333444566677777 788766


Q ss_pred             CccccccccccccCccccccEEEEeccc
Q 044585          302 CHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       302 c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      + +++.+++ ..+..+++|+.++++++|
T Consensus       533 N-~l~~~~~-~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          533 N-HISIILP-SLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             S-CCCCCCG-GGHHHHHTSSEEECTTCC
T ss_pred             C-cccccCH-hhcccCCCCCEEeCCCCC
Confidence            6 4445533 234567778888887765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.83  E-value=1.8e-19  Score=165.74  Aligned_cols=124  Identities=15%  Similarity=0.194  Sum_probs=76.0

Q ss_pred             cCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccccccc
Q 044585          183 SELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKEND  261 (352)
Q Consensus       183 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~  261 (352)
                      ++|+.|+++++ .++..   .....+++|++|+ +.+.++.+....        ++.+++|++|++++ +.++.++... 
T Consensus       226 ~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~-  291 (390)
T 3o6n_A          226 VELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP--------FVKMQRLERLYISN-NRLVALNLYG-  291 (390)
T ss_dssp             SSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGG--------GTTCSSCCEEECCS-SCCCEEECSS-
T ss_pred             ccccEEECCCC-CCccc---HHHcCCCCccEEECCCCcCCCcChhH--------ccccccCCEEECCC-CcCcccCccc-
Confidence            46666666665 33332   1233566777776 555555443221        34567777787777 3556555432 


Q ss_pred             ccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          262 ESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       262 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                         ..+++|+.|++++| .++.+|..+..+++|++|++++|+ ++.++    ...+++|+.|++++++
T Consensus       292 ---~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          292 ---QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             ---SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred             ---CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence               35677888888777 566676666677788888886664 45542    3456778888887753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=1.3e-19  Score=180.74  Aligned_cols=95  Identities=14%  Similarity=-0.006  Sum_probs=71.9

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccC
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      ++.+++|+.|+++++.--..+|.. +   ..++.|+.|+++++.-...+|..++.+++|++|+++++.--..+|.  .+.
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~-l---~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~--~l~  701 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKE-I---GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMS  701 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGG-G---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG--GGG
T ss_pred             hhccccccEEECcCCcccccCCHH-H---hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh--HHh
Confidence            455688999999996443455543 4   6889999999999865558888899999999999988754444433  466


Q ss_pred             ccccccEEEEecccccceecc
Q 044585          316 SLIILQSMTIADCKRIEEIIQ  336 (352)
Q Consensus       316 ~l~~L~~L~i~~c~~l~~~~~  336 (352)
                      .+++|++|++++++.-..++.
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECCS
T ss_pred             CCCCCCEEECcCCcccccCCC
Confidence            788999999999876555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=4.4e-20  Score=184.18  Aligned_cols=294  Identities=15%  Similarity=0.055  Sum_probs=164.4

Q ss_pred             ecCCccEEeccccccce-EeccCCCCCCCceEEEecccccCcceee--cC----------ccchhhhhhceeeeccCccc
Q 044585            5 EFPSLEQVSMTHCPNMK-TFSRGISSTPKLYVVQVTEREEGEHHWE--GN----------KLNSTIQKCYEVMIGFRDIE   71 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~----------~~~~~~~~l~~~~~~~~~L~   71 (352)
                      .+++|++|++.+| .+. .+|..  .+++|++|++++|.+.+....  ..          ..|.-...+|..+..+++|+
T Consensus       245 ~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  321 (768)
T 3rgz_A          245 TCTELKLLNISSN-QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE  321 (768)
T ss_dssp             TCSSCCEEECCSS-CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred             cCCCCCEEECCCC-cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence            4778888888888 444 33332  677888888885432210000  00          00111112333334444444


Q ss_pred             eeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCC-CCcEEEEccCCCcceeeeecccccccc
Q 044585           72 HLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLN-NLRCLEVRNCDLIEEVLHLEELNAKEE  149 (352)
Q Consensus        72 ~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~  149 (352)
                      +|+++++. +. .++... +  +.+++|++|++++| .+....|.. +..++ +|+.|++++|.....++...       
T Consensus       322 ~L~L~~n~-l~~~ip~~~-l--~~l~~L~~L~Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~-------  388 (768)
T 3rgz_A          322 SLALSSNN-FSGELPMDT-L--LKMRGLKVLDLSFN-EFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNL-------  388 (768)
T ss_dssp             EEECCSSE-EEEECCHHH-H--TTCTTCCEEECCSS-EEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTT-------
T ss_pred             EEECCCCc-ccCcCCHHH-H--hcCCCCCEEeCcCC-ccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhh-------
Confidence            44444443 22 222110 0  23444555555544 233222222 22333 45555554443221111100       


Q ss_pred             ccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcc
Q 044585          150 HIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQ  228 (352)
Q Consensus       150 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~  228 (352)
                       ....+++|+.|++.++.-...++.   .+..+++|+.|++++| .++...|..+. .+++|+.|+ ..+.+....+.. 
T Consensus       389 -~~~~~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N-~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~-  461 (768)
T 3rgz_A          389 -CQNPKNTLQELYLQNNGFTGKIPP---TLSNCSELVSLHLSFN-YLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQE-  461 (768)
T ss_dssp             -TCSTTCCCCEEECCSSEEEEECCG---GGGGCTTCCEEECCSS-EEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGG-
T ss_pred             -hhcccCCccEEECCCCccccccCH---HHhcCCCCCEEECcCC-cccCcccHHHh-cCCCCCEEECCCCcccCcCCHH-
Confidence             000256788888877653333332   4567788888888887 44444455554 778888887 555554332221 


Q ss_pred             cCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585          229 VQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       229 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                             ++.+++|++|+++++.....++ ..+   ..+++|+.|++++|.....+|..+..+++|++|++++|.....+
T Consensus       462 -------~~~l~~L~~L~L~~N~l~~~~p-~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  530 (768)
T 3rgz_A          462 -------LMYVKTLETLILDFNDLTGEIP-SGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI  530 (768)
T ss_dssp             -------GGGCTTCCEEECCSSCCCSCCC-GGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             -------HcCCCCceEEEecCCcccCcCC-HHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence                   4567899999999964433444 334   57899999999998655578888889999999999888654455


Q ss_pred             ccccccCccccccEEEEeccccccee
Q 044585          309 LTLSTSRSLIILQSMTIADCKRIEEI  334 (352)
Q Consensus       309 ~~~~~~~~l~~L~~L~i~~c~~l~~~  334 (352)
                      |.  .+..+++|+.|++++|+....+
T Consensus       531 p~--~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          531 PA--ELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             CG--GGGGCTTCCEEECCSSEEESBC
T ss_pred             CH--HHcCCCCCCEEECCCCccCCcC
Confidence            33  4567899999999988654333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=1.6e-19  Score=175.60  Aligned_cols=271  Identities=13%  Similarity=0.054  Sum_probs=195.9

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+++|++|++.++ .++.++ .+..+++|++|++++|              .+..+|. + .+++|++|+++++..+...
T Consensus       283 ~l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n--------------~l~~lp~-~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          283 CLANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRC--------------QLKQFPT-L-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             GGTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESC--------------CCSSCCC-C-CCSSCCEEEEESCSSCEEC
T ss_pred             cCCCCCEEEecCc-cchhhh-hccccccCCEEEcccc--------------cCccccc-C-CCCccceeeccCCcCccch
Confidence            4688899999888 667777 6778889999999943              3355663 3 8899999999998756543


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccC-CchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAI-PTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      +.      +.+++|++|++++| .+.... ....+..+++|++|++++|. +..++.         .+. .+++|+.|++
T Consensus       345 ~~------~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---------~~~-~l~~L~~L~l  406 (606)
T 3vq2_A          345 KK------VALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA---------NFM-GLEELQHLDF  406 (606)
T ss_dssp             CC------CCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC---------CCT-TCTTCCEEEC
T ss_pred             hh------ccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccchh---------hcc-CCCCCCeeEC
Confidence            21      46899999999998 455442 12336789999999999976 444431         112 6889999999


Q ss_pred             ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585          164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL  242 (352)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L  242 (352)
                      +++.-.. ..... .+..+++|+.|++++|. +....|..+ ..+++|+.|+ ..+.++......       .++.+++|
T Consensus       407 ~~n~l~~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L  475 (606)
T 3vq2_A          407 QHSTLKR-VTEFS-AFLSLEKLLYLDISYTN-TKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSN-------VFANTTNL  475 (606)
T ss_dssp             TTSEEES-TTTTT-TTTTCTTCCEEECTTSC-CEECCTTTT-TTCTTCCEEECTTCEEGGGEECS-------CCTTCTTC
T ss_pred             CCCccCC-ccChh-hhhccccCCEEECcCCC-CCccchhhh-cCCCCCCEEECCCCcCCCcchHH-------hhccCCCC
Confidence            9875333 22211 45678999999999984 555445444 4789999998 666666521111       14678999


Q ss_pred             ceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccc-ccc
Q 044585          243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLI-ILQ  321 (352)
Q Consensus       243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~  321 (352)
                      ++|++++| .++.++...+   ..+++|+.|++++|.-....|..+..+++|++|++++|+ ++.++..  +..++ +|+
T Consensus       476 ~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~  548 (606)
T 3vq2_A          476 TFLDLSKC-QLEQISWGVF---DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLA  548 (606)
T ss_dssp             CEEECTTS-CCCEECTTTT---TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC--GGGSCTTCC
T ss_pred             CEEECCCC-cCCccChhhh---cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh--HhhhcccCc
Confidence            99999996 6666665555   688999999999995433446778899999999998874 7777553  55665 599


Q ss_pred             EEEEeccc
Q 044585          322 SMTIADCK  329 (352)
Q Consensus       322 ~L~i~~c~  329 (352)
                      .|+++++|
T Consensus       549 ~l~l~~N~  556 (606)
T 3vq2_A          549 FFNLTNNS  556 (606)
T ss_dssp             EEECCSCC
T ss_pred             EEEccCCC
Confidence            99998865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=3.1e-20  Score=181.36  Aligned_cols=274  Identities=15%  Similarity=0.108  Sum_probs=166.3

Q ss_pred             eecCCccEEeccccccceE------------------eccCCC--CCCCceEEEecccccCcceeecCccchhhhhhcee
Q 044585            4 LEFPSLEQVSMTHCPNMKT------------------FSRGIS--STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV   63 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~   63 (352)
                      .++++|++|++.+| .++.                  +|..++  .+++|++|++++             |.-...+|..
T Consensus       203 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~-------------n~l~~~~p~~  268 (636)
T 4eco_A          203 MRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN-------------CPNLTKLPTF  268 (636)
T ss_dssp             GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC-------------CTTCSSCCTT
T ss_pred             hcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecC-------------CcCCccChHH
Confidence            45889999999998 5776                  888888  899999999994             3344556767


Q ss_pred             eeccCccceeEeccCCCcc--eeccCCCCCCCC------CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585           64 MIGFRDIEHLQLSHFPRLR--EIWHGQAVPVSF------FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI  135 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~--~~~~~~~l~~~~------l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  135 (352)
                      +..+++|++|+++++..++  .++...    +.      +++|++|++++| .+...+....+..+++|++|++++|...
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~----~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDW----QALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHH----HHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHH----HhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCc
Confidence            7778888888888775343  233222    22      377888888877 4554332124667788888888776533


Q ss_pred             ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccC-cceEeeccCCCCcccccchhhh--------
Q 044585          136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSE-LENLTIENCPDMETFISNSVVH--------  206 (352)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~--------  206 (352)
                      ..++.+.           .+++|+.|+++++. +..++.   .+..+++ |+.|+++++. ++.+ |..+..        
T Consensus       344 g~ip~~~-----------~l~~L~~L~L~~N~-l~~lp~---~l~~l~~~L~~L~Ls~N~-l~~l-p~~~~~~~l~~L~~  406 (636)
T 4eco_A          344 GKLPAFG-----------SEIKLASLNLAYNQ-ITEIPA---NFCGFTEQVENLSFAHNK-LKYI-PNIFDAKSVSVMSA  406 (636)
T ss_dssp             EECCCCE-----------EEEEESEEECCSSE-EEECCT---TSEEECTTCCEEECCSSC-CSSC-CSCCCTTCSSCEEE
T ss_pred             cchhhhC-----------CCCCCCEEECCCCc-cccccH---hhhhhcccCcEEEccCCc-Cccc-chhhhhcccCccCE
Confidence            2443221           45555555555442 222222   2444454 5555555542 3322 322210        


Q ss_pred             ------------------------ccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccccccc
Q 044585          207 ------------------------VTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKEND  261 (352)
Q Consensus       207 ------------------------~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~  261 (352)
                                              .+++|+.|+ ..+.++.++...        +..+++|++|+++++ .++.++...+
T Consensus       407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--------~~~l~~L~~L~Ls~N-~l~~i~~~~~  477 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL--------FSTGSPLSSINLMGN-MLTEIPKNSL  477 (636)
T ss_dssp             EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH--------HHTTCCCSEEECCSS-CCSBCCSSSS
T ss_pred             EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH--------HccCCCCCEEECCCC-CCCCcCHHHh
Confidence                                    223444444 333333222111        234678888888884 5666765544


Q ss_pred             cccccc-------CCcceEEEecCCCcccccCCcc--CCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          262 ESNKAF-------ANLKSLEIFECSKLQKLVPASW--HLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       262 ~~~~~~-------~~L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                         ...       ++|+.|+++++ .++.+|..+.  .+++|++|+++++ +++.+|.  .+..+++|+.|+++++.
T Consensus       478 ---~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          478 ---KDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             ---EETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCB
T ss_pred             ---ccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCc
Confidence               222       28889999887 5667887665  8889999999776 4555543  34568889999996543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=2e-19  Score=179.72  Aligned_cols=294  Identities=12%  Similarity=0.080  Sum_probs=150.2

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccc-cCc--ce-----------------eecCccchhhhhhce--
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTERE-EGE--HH-----------------WEGNKLNSTIQKCYE--   62 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~-~~~--~~-----------------~~~~~~~~~~~~l~~--   62 (352)
                      ++++|++|++.+|.....+|..+..+++|++|++++|. +..  .+                 .... .+..+..+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L-s~N~L~~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GYNNLEEFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC-CSSCCCBCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe-eCCcCCccCChh
Confidence            68999999999997677889888999999999999875 443  11                 0011 1123335666  


Q ss_pred             eeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCC-CcEEEEccCCCcceeeee
Q 044585           63 VMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNN-LRCLEVRNCDLIEEVLHL  141 (352)
Q Consensus        63 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~  141 (352)
                      .+..+++|+.|+++++. ++.++ ..    +.+++|++|++++| .+.. .|.. +..+++ |+.|++++|. +..++..
T Consensus       568 ~l~~L~~L~~L~Ls~N~-l~~lp-~~----~~L~~L~~L~Ls~N-~l~~-lp~~-l~~l~~~L~~L~Ls~N~-L~~lp~~  637 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNK-VRHLE-AF----GTNVKLTDLKLDYN-QIEE-IPED-FCAFTDQVEGLGFSHNK-LKYIPNI  637 (876)
T ss_dssp             HHTTCTTCCEEECTTSC-CCBCC-CC----CTTSEESEEECCSS-CCSC-CCTT-SCEECTTCCEEECCSSC-CCSCCSC
T ss_pred             hhhcCCCCCEEECCCCC-cccch-hh----cCCCcceEEECcCC-cccc-chHH-HhhccccCCEEECcCCC-CCcCchh
Confidence            66677777777777766 55544 22    35677777777776 3443 3322 556666 7777777765 3333221


Q ss_pred             ccccccccccCCCCcccCeeccccccccccccccCC--ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCC
Q 044585          142 EELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG--NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLT  218 (352)
Q Consensus       142 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~  218 (352)
                      ....        ..++|+.|+++++.-...++....  .....++|+.|++++| .++.+ |..+...+++|+.|+ +.+
T Consensus       638 ~~~~--------~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          638 FNAK--------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN  707 (876)
T ss_dssp             CCTT--------CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC
T ss_pred             hhcc--------ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC
Confidence            1000        122356666655432111110000  0112335556665555 33332 444444555555555 444


Q ss_pred             ccchhhhhcccCC---------------------CCC-ccc--ccCCcceeecccccccccccccccccccccCCcceEE
Q 044585          219 SEENFLLAHQVQP---------------------LFD-EKL--TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLE  274 (352)
Q Consensus       219 ~l~~~~~~~~~~~---------------------~~~-~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~  274 (352)
                      .++.++.......                     .++ .+.  .+++|+.|+++++ .++.++...    ..+++|+.|+
T Consensus       708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l----~~L~~L~~L~  782 (876)
T 4ecn_A          708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQP----LNSSQLKAFG  782 (876)
T ss_dssp             CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG----GGCTTCCEEE
T ss_pred             cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchhh----hcCCCCCEEE
Confidence            4443222110000                     000 011  3455555555552 333343222    2555555555


Q ss_pred             Eec------CCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          275 IFE------CSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       275 l~~------c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      +++      +.....+|..+..+++|++|++++|.- ..+|.. +.   ++|+.|++++|+
T Consensus       783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~---~~L~~LdLs~N~  838 (876)
T 4ecn_A          783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LT---PQLYILDIADNP  838 (876)
T ss_dssp             CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC---SSSCEEECCSCT
T ss_pred             CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hc---CCCCEEECCCCC
Confidence            544      222334444555556666666655532 444332 21   356666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=6.6e-19  Score=158.33  Aligned_cols=267  Identities=12%  Similarity=0.129  Sum_probs=145.3

Q ss_pred             CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceecc
Q 044585            8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      +++++++.++ .++.+|..+  .++|++|+++++.              +..++. .+..+++|++|+++++. ++.+..
T Consensus        32 ~l~~l~~~~~-~l~~lp~~~--~~~l~~L~L~~n~--------------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~   93 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPKDL--PPDTALLDLQNNK--------------ITEIKDGDFKNLKNLHTLILINNK-ISKISP   93 (330)
T ss_dssp             ETTEEECTTS-CCCSCCCSC--CTTCCEEECCSSC--------------CCCBCTTTTTTCTTCCEEECCSSC-CCCBCT
T ss_pred             CCeEEEecCC-CccccCccC--CCCCeEEECCCCc--------------CCEeChhhhccCCCCCEEECCCCc-CCeeCH
Confidence            5677777665 566666544  3677777777432              223332 34466777777777665 544322


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      .. +  +.+++|++|++++| .+...+ ..   ..++|++|++++|. +..++.        ..+. .+++|+.|+++++
T Consensus        94 ~~-~--~~l~~L~~L~Ls~n-~l~~l~-~~---~~~~L~~L~l~~n~-l~~~~~--------~~~~-~l~~L~~L~l~~n  155 (330)
T 1xku_A           94 GA-F--APLVKLERLYLSKN-QLKELP-EK---MPKTLQELRVHENE-ITKVRK--------SVFN-GLNQMIVVELGTN  155 (330)
T ss_dssp             TT-T--TTCTTCCEEECCSS-CCSBCC-SS---CCTTCCEEECCSSC-CCBBCH--------HHHT-TCTTCCEEECCSS
T ss_pred             HH-h--cCCCCCCEEECCCC-cCCccC-hh---hcccccEEECCCCc-ccccCH--------hHhc-CCccccEEECCCC
Confidence            11 1  34667777777776 344432 22   12567777777654 222211        0011 5667777777654


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL  245 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L  245 (352)
                      .- .........+..+++|+.|.++++ .++.+ |..+.   ++|++|+ ..+.++.+....        +..+++|++|
T Consensus       156 ~l-~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-~~~~~---~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L  221 (330)
T 1xku_A          156 PL-KSSGIENGAFQGMKKLSYIRIADT-NITTI-PQGLP---PSLTELHLDGNKITKVDAAS--------LKGLNNLAKL  221 (330)
T ss_dssp             CC-CGGGBCTTGGGGCTTCCEEECCSS-CCCSC-CSSCC---TTCSEEECTTSCCCEECTGG--------GTTCTTCCEE
T ss_pred             cC-CccCcChhhccCCCCcCEEECCCC-ccccC-Ccccc---ccCCEEECCCCcCCccCHHH--------hcCCCCCCEE
Confidence            32 111111113455667777777666 34443 43332   5666666 544554432221        3456677777


Q ss_pred             ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccccccc-----Cccccc
Q 044585          246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTS-----RSLIIL  320 (352)
Q Consensus       246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~l~~L  320 (352)
                      +++++ .++.++...+   ..+++|+.|++++| .++.+|..+..+++|++|+++++ .++.++.....     ...++|
T Consensus       222 ~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          222 GLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             ECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCC
T ss_pred             ECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccc
Confidence            77773 4555554444   46677777777776 45667666667777777777655 34554332211     123556


Q ss_pred             cEEEEecccc
Q 044585          321 QSMTIADCKR  330 (352)
Q Consensus       321 ~~L~i~~c~~  330 (352)
                      +.+++.+.|.
T Consensus       296 ~~l~l~~N~~  305 (330)
T 1xku_A          296 SGVSLFSNPV  305 (330)
T ss_dssp             SEEECCSSSS
T ss_pred             cceEeecCcc
Confidence            6777776653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=1.7e-19  Score=169.15  Aligned_cols=87  Identities=17%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcccccccccccc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTS  314 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  314 (352)
                      ++.+++|++|+++++ .++.++...+   ..+++|+.|++++| .++.+ +..+..+++|++|++++| +++.+++ ..+
T Consensus       295 ~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~  367 (455)
T 3v47_A          295 FSHFTDLEQLTLAQN-EINKIDDNAF---WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGD-QSF  367 (455)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECT-TTT
T ss_pred             cccCCCCCEEECCCC-cccccChhHh---cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccCh-hhc
Confidence            455677888888774 5555555444   57788888888887 44554 445677888888888776 4555533 245


Q ss_pred             CccccccEEEEeccc
Q 044585          315 RSLIILQSMTIADCK  329 (352)
Q Consensus       315 ~~l~~L~~L~i~~c~  329 (352)
                      ..+++|++|+++++.
T Consensus       368 ~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          368 LGLPNLKELALDTNQ  382 (455)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cccccccEEECCCCc
Confidence            667888888888863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=3.3e-19  Score=173.32  Aligned_cols=275  Identities=17%  Similarity=0.150  Sum_probs=196.9

Q ss_pred             CccEEeccccccceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            8 SLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      +|++|++.+| .++.++.. +..+++|++|+++++              .+..+|..+..+++|++|+++++. ++....
T Consensus       255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--------------~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~  318 (606)
T 3t6q_A          255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT--------------HLSELPSGLVGLSTLKKLVLSANK-FENLCQ  318 (606)
T ss_dssp             EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS--------------CCSCCCSSCCSCTTCCEEECTTCC-CSBGGG
T ss_pred             ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC--------------ccCCCChhhcccccCCEEECccCC-cCcCch
Confidence            7899999998 66666654 678999999999943              455677778889999999999987 655432


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      .. +  ..+++|++|++++|. +....+...+..+++|++|++++|... .+...      ...+. .+++|+.|+++++
T Consensus       319 ~~-~--~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~------~~~~~-~l~~L~~L~l~~n  386 (606)
T 3t6q_A          319 IS-A--SNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIE-TSDCC------NLQLR-NLSHLQSLNLSYN  386 (606)
T ss_dssp             GC-G--GGCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSSCCC-EEEES------TTTTT-TCTTCCEEECCSC
T ss_pred             hh-h--hccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCCccc-cccCc------chhcc-cCCCCCEEECCCC
Confidence            22 2  468999999999984 443344444778999999999997643 32110      01122 7899999999987


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL  245 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L  245 (352)
                      . +..+...  .+..+++|+.|+++++. ++...+...+..+++|+.|+ ..+.++......        ++.+++|++|
T Consensus       387 ~-l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L  454 (606)
T 3t6q_A          387 E-PLSLKTE--AFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL--------FDGLPALQHL  454 (606)
T ss_dssp             S-CEEECTT--TTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT--------TTTCTTCCEE
T ss_pred             c-CCcCCHH--HhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCHHH--------HhCCCCCCEE
Confidence            5 3333221  45678999999999984 44443445455889999998 666665544332        4668999999


Q ss_pred             eccccccccc--ccc-cccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCcccccc
Q 044585          246 KLSRLHKVQH--LWK-ENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQ  321 (352)
Q Consensus       246 ~l~~~~~l~~--l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  321 (352)
                      +++++. ++.  ++. ..+   ..+++|+.|++++|. ++.+ |..+..+++|++|+++++ +++...+ ..+..+++| 
T Consensus       455 ~L~~n~-l~~~~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L-  526 (606)
T 3t6q_A          455 NLQGNH-FPKGNIQKTNSL---QTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI-  526 (606)
T ss_dssp             ECTTCB-CGGGEECSSCGG---GGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-
T ss_pred             ECCCCC-CCccccccchhh---ccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC-ccCcCCh-hHhCccccc-
Confidence            999964 433  111 223   578999999999994 5554 567889999999999887 4555544 356678889 


Q ss_pred             EEEEecccc
Q 044585          322 SMTIADCKR  330 (352)
Q Consensus       322 ~L~i~~c~~  330 (352)
                      .|+++++..
T Consensus       527 ~L~L~~N~l  535 (606)
T 3t6q_A          527 YLNLASNHI  535 (606)
T ss_dssp             EEECCSSCC
T ss_pred             EEECcCCcc
Confidence            999988843

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.1e-19  Score=163.14  Aligned_cols=230  Identities=20%  Similarity=0.278  Sum_probs=120.4

Q ss_pred             CCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCC
Q 044585           30 TPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNM  109 (352)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l  109 (352)
                      ..++++|++++              ..+..+|..++.+++|++|+++++. ++.++...    +.+++|++|++++| .+
T Consensus        80 ~~~l~~L~L~~--------------n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~----~~l~~L~~L~Ls~n-~l  139 (328)
T 4fcg_A           80 QPGRVALELRS--------------VPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM----QQFAGLETLTLARN-PL  139 (328)
T ss_dssp             STTCCEEEEES--------------SCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG----GGGTTCSEEEEESC-CC
T ss_pred             ccceeEEEccC--------------CCchhcChhhhhCCCCCEEECCCCC-ccchhHHH----hccCCCCEEECCCC-cc
Confidence            45666666662              2334555555566666666666655 44444332    35666777777766 34


Q ss_pred             cccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEe
Q 044585          110 SSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLT  189 (352)
Q Consensus       110 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~  189 (352)
                      ... |.. +..+++|++|++++|..+..++...........+. .+++|++|+++++. ++.++.   .+..+++|+.|+
T Consensus       140 ~~l-p~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~lp~---~l~~l~~L~~L~  212 (328)
T 4fcg_A          140 RAL-PAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQ-GLVNLQSLRLEWTG-IRSLPA---SIANLQNLKSLK  212 (328)
T ss_dssp             CCC-CGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE-ESTTCCEEEEEEEC-CCCCCG---GGGGCTTCCEEE
T ss_pred             ccC-cHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhc-cCCCCCEEECcCCC-cCcchH---hhcCCCCCCEEE
Confidence            432 322 55667777777776665554432111000000111 47777777777653 444333   456677888888


Q ss_pred             eccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCC
Q 044585          190 IENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFAN  269 (352)
Q Consensus       190 l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~  269 (352)
                      +++| .++.+ |..+                                +.+++|++|++++|+..+.++.. +   ..+++
T Consensus       213 L~~N-~l~~l-~~~l--------------------------------~~l~~L~~L~Ls~n~~~~~~p~~-~---~~l~~  254 (328)
T 4fcg_A          213 IRNS-PLSAL-GPAI--------------------------------HHLPKLEELDLRGCTALRNYPPI-F---GGRAP  254 (328)
T ss_dssp             EESS-CCCCC-CGGG--------------------------------GGCTTCCEEECTTCTTCCBCCCC-T---TCCCC
T ss_pred             ccCC-CCCcC-chhh--------------------------------ccCCCCCEEECcCCcchhhhHHH-h---cCCCC
Confidence            8877 34433 3222                                22345555555554444444322 1   34555


Q ss_pred             cceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEe
Q 044585          270 LKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIA  326 (352)
Q Consensus       270 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~  326 (352)
                      |+.|++++|..+..+|..+..+++|++|++++|+.+..+|.  .+..+++|+.+.+.
T Consensus       255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVP  309 (328)
T ss_dssp             CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred             CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCC
Confidence            55555555555555555555555555555555555555432  23445555555444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=2.5e-19  Score=169.16  Aligned_cols=268  Identities=15%  Similarity=0.161  Sum_probs=154.2

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQA   89 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   89 (352)
                      +.++..+. +++.+|..+  .+++++|+++++.+....             +..+..+++|++|+++++. ++.+.... 
T Consensus        14 ~~v~c~~~-~l~~ip~~~--~~~l~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~-i~~~~~~~-   75 (477)
T 2id5_A           14 RAVLCHRK-RFVAVPEGI--PTETRLLDLGKNRIKTLN-------------QDEFASFPHLEELELNENI-VSAVEPGA-   75 (477)
T ss_dssp             TEEECCSC-CCSSCCSCC--CTTCSEEECCSSCCCEEC-------------TTTTTTCTTCCEEECTTSC-CCEECTTT-
T ss_pred             CEEEeCCC-CcCcCCCCC--CCCCcEEECCCCccceEC-------------HhHccCCCCCCEEECCCCc-cCEeChhh-
Confidence            45565554 778888766  579999999954333221             2345577888888888876 66553322 


Q ss_pred             CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccc
Q 044585           90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKL  169 (352)
Q Consensus        90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  169 (352)
                      +  ..+++|++|++++| .+...++ ..+..+++|++|++++|.. ..+..        ..+. .+++|+.|++.++. +
T Consensus        76 ~--~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~i-~~~~~--------~~~~-~l~~L~~L~l~~n~-l  140 (477)
T 2id5_A           76 F--NNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLTKLDISENKI-VILLD--------YMFQ-DLYNLKSLEVGDND-L  140 (477)
T ss_dssp             T--TTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCCEEECTTSCC-CEECT--------TTTT-TCTTCCEEEECCTT-C
T ss_pred             h--hCCccCCEEECCCC-cCCccCc-ccccCCCCCCEEECCCCcc-ccCCh--------hHcc-ccccCCEEECCCCc-c
Confidence            2  35788888888887 4555433 3356788888888887653 22211        0111 56777777776643 3


Q ss_pred             ccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecc
Q 044585          170 KRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLS  248 (352)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  248 (352)
                      ..+...  .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ ..+.+..+....        +..+++|+.|+++
T Consensus       141 ~~~~~~--~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~l~  208 (477)
T 2id5_A          141 VYISHR--AFSGLNSLEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYS--------FKRLYRLKVLEIS  208 (477)
T ss_dssp             CEECTT--SSTTCTTCCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTC--------SCSCTTCCEEEEE
T ss_pred             ceeChh--hccCCCCCCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCCcCcEeChhh--------cccCcccceeeCC
Confidence            322211  3445667777777766 44444 333334566666666 444443332211        2334444444444


Q ss_pred             ccc-----------------------ccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcc
Q 044585          249 RLH-----------------------KVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHR  304 (352)
Q Consensus       249 ~~~-----------------------~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~  304 (352)
                      +++                       .++.++...+   ..+++|+.|+++++. ++.++. .+..+++|++|+++++ +
T Consensus       209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~  283 (477)
T 2id5_A          209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV---RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-Q  283 (477)
T ss_dssp             CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH---TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-C
T ss_pred             CCccccccCcccccCccccEEECcCCcccccCHHHh---cCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-c
Confidence            443                       3444443333   456667777776663 444432 4566777777777655 4


Q ss_pred             ccccccccccCccccccEEEEecc
Q 044585          305 LINLLTLSTSRSLIILQSMTIADC  328 (352)
Q Consensus       305 l~~~~~~~~~~~l~~L~~L~i~~c  328 (352)
                      ++.+.+ ..+..+++|+.|+++++
T Consensus       284 l~~~~~-~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          284 LAVVEP-YAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             CSEECT-TTBTTCTTCCEEECCSS
T ss_pred             cceECH-HHhcCcccCCEEECCCC
Confidence            444433 24566777888888776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.1e-18  Score=157.12  Aligned_cols=244  Identities=16%  Similarity=0.233  Sum_probs=107.2

Q ss_pred             CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceecc
Q 044585            8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      +++++++.++ .++.+|..+  .++|++|+++++.              +..++ ..+..+++|++|+++++. ++.+..
T Consensus        34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~--------------i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~   95 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNND--------------ISELRKDDFKGLQHLYALVLVNNK-ISKIHE   95 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSC--------------CCEECTTTTTTCTTCCEEECCSSC-CCEECG
T ss_pred             cCCEEECCCC-CccccCCCC--CCCCeEEECCCCc--------------CCccCHhHhhCCCCCcEEECCCCc-cCccCH
Confidence            4566666655 455555544  3566666666332              22221 233455556666665554 443321


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      .. +  +.+++|++|++++| .+...+. .   ..++|++|++++|. +..++.        ..+. .+++|+.|+++++
T Consensus        96 ~~-~--~~l~~L~~L~L~~n-~l~~l~~-~---~~~~L~~L~l~~n~-i~~~~~--------~~~~-~l~~L~~L~l~~n  157 (332)
T 2ft3_A           96 KA-F--SPLRKLQKLYISKN-HLVEIPP-N---LPSSLVELRIHDNR-IRKVPK--------GVFS-GLRNMNCIEMGGN  157 (332)
T ss_dssp             GG-S--TTCTTCCEEECCSS-CCCSCCS-S---CCTTCCEEECCSSC-CCCCCS--------GGGS-SCSSCCEEECCSC
T ss_pred             hH-h--hCcCCCCEEECCCC-cCCccCc-c---ccccCCEEECCCCc-cCccCH--------hHhC-CCccCCEEECCCC
Confidence            11 1  23555666666555 3333222 1   11455666655543 222211        0011 4555555555544


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCccee
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKEL  245 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L  245 (352)
                      . ++........+..+ +|+.|+++++ .++.+ |..+.   ++|++|+ ..+.++.+....        +..+++|+.|
T Consensus       158 ~-l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l-~~~~~---~~L~~L~l~~n~i~~~~~~~--------l~~l~~L~~L  222 (332)
T 2ft3_A          158 P-LENSGFEPGAFDGL-KLNYLRISEA-KLTGI-PKDLP---ETLNELHLDHNKIQAIELED--------LLRYSKLYRL  222 (332)
T ss_dssp             C-CBGGGSCTTSSCSC-CCSCCBCCSS-BCSSC-CSSSC---SSCSCCBCCSSCCCCCCTTS--------STTCTTCSCC
T ss_pred             c-cccCCCCcccccCC-ccCEEECcCC-CCCcc-Ccccc---CCCCEEECCCCcCCccCHHH--------hcCCCCCCEE
Confidence            2 11100000012222 5555555554 23332 33222   4555555 434443332111        2344555555


Q ss_pred             ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585          246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      ++++ +.++.++...+   ..+++|+.|+++++ .++.+|..+..+++|++|+++++ .++.+
T Consensus       223 ~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~  279 (332)
T 2ft3_A          223 GLGH-NQIRMIENGSL---SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKV  279 (332)
T ss_dssp             BCCS-SCCCCCCTTGG---GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBC
T ss_pred             ECCC-CcCCcCChhHh---hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCcc
Confidence            5555 24444443333   34555555555554 34455555555555555555443 33443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=1.3e-19  Score=177.05  Aligned_cols=295  Identities=10%  Similarity=0.074  Sum_probs=149.2

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccc-cCc--ce----------------eecCccchhhhhhce--e
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTERE-EGE--HH----------------WEGNKLNSTIQKCYE--V   63 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~-~~~--~~----------------~~~~~~~~~~~~l~~--~   63 (352)
                      ++++|++|++.+|.....+|..++.+++|++|++++|. +.+  .+                .... .+..+..+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L-~~n~l~~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI-GYNNLKTFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC-CSSCCSSCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC-CCCcCCccCchhh
Confidence            68999999999997677889989999999999999764 432  11                0000 0112334554  4


Q ss_pred             eeccCccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCC-CcEEEEccCCCcceeeee
Q 044585           64 MIGFRDIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNN-LRCLEVRNCDLIEEVLHL  141 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~  141 (352)
                      +..+++|++|+++++. ++ .++ ..    +.+++|++|++++| .+.. .|.. +..+++ |++|++++|. +..++..
T Consensus       326 l~~l~~L~~L~L~~N~-l~g~ip-~~----~~l~~L~~L~L~~N-~l~~-lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~  395 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQ-LEGKLP-AF----GSEIKLASLNLAYN-QITE-IPAN-FCGFTEQVENLSFAHNK-LKYIPNI  395 (636)
T ss_dssp             HTTCTTCCEEECCSCC-CEEECC-CC----EEEEEESEEECCSS-EEEE-CCTT-SEEECTTCCEEECCSSC-CSSCCSC
T ss_pred             hccCCCCCEEeCcCCc-Cccchh-hh----CCCCCCCEEECCCC-cccc-ccHh-hhhhcccCcEEEccCCc-Ccccchh
Confidence            5555666666666555 43 433 22    34556666666665 3332 2222 445566 6666666654 2233221


Q ss_pred             ccccccccccCCCCcccCeeccccccccccccccC----CceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-C
Q 044585          142 EELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFT----GNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-K  216 (352)
Q Consensus       142 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~  216 (352)
                      ..        ...+++|+.|+++++.-....+...    .....+++|+.|+++++ .++.+ |..+...+++|+.|+ .
T Consensus       396 ~~--------~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          396 FD--------AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLM  465 (636)
T ss_dssp             CC--------TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECC
T ss_pred             hh--------hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECC
Confidence            10        0023356666665543221111100    00113446666666665 34433 444444456666665 4


Q ss_pred             CCccchhhhhcccC---------------------CCCC-ccc--ccCCcceeecccccccccccccccccccccCCcce
Q 044585          217 LTSEENFLLAHQVQ---------------------PLFD-EKL--TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKS  272 (352)
Q Consensus       217 ~~~l~~~~~~~~~~---------------------~~~~-~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~  272 (352)
                      .+.++.++......                     ..++ .+.  .+++|+.|+++++ .++.++...    ..+++|+.
T Consensus       466 ~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~----~~l~~L~~  540 (636)
T 4eco_A          466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP----LNSSTLKG  540 (636)
T ss_dssp             SSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG----GGCSSCCE
T ss_pred             CCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhh----hcCCCCCE
Confidence            44444322211000                     0000 022  4556666666663 444444332    35566666


Q ss_pred             EEEec------CCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecccc
Q 044585          273 LEIFE------CSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKR  330 (352)
Q Consensus       273 L~l~~------c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~  330 (352)
                      |++++      +.....+|..+..+++|++|++++|.- +.+|.. +.   ++|+.|++++|+.
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~---~~L~~L~Ls~N~l  599 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-IT---PNISVLDIKDNPN  599 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC---TTCCEEECCSCTT
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-Hh---CcCCEEECcCCCC
Confidence            66643      222334555556666666666655533 555332 22   4566666666643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=5.1e-19  Score=158.85  Aligned_cols=212  Identities=18%  Similarity=0.289  Sum_probs=152.0

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN  145 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  145 (352)
                      ..+++++|+++++. ++.++...    ..+++|++|++++| .+.. .|.. +..+++|++|++++|. +..++..    
T Consensus        79 ~~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n-~l~~-lp~~-~~~l~~L~~L~Ls~n~-l~~lp~~----  145 (328)
T 4fcg_A           79 TQPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAA-GLME-LPDT-MQQFAGLETLTLARNP-LRALPAS----  145 (328)
T ss_dssp             TSTTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESS-CCCC-CCSC-GGGGTTCSEEEEESCC-CCCCCGG----
T ss_pred             cccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCC-Cccc-hhHH-HhccCCCCEEECCCCc-cccCcHH----
Confidence            45789999999877 77655544    46889999999998 4554 3432 5788999999999875 3344321    


Q ss_pred             ccccccCCCCcccCeeccccccccccccccCC------ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCc
Q 044585          146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG------NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTS  219 (352)
Q Consensus       146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~  219 (352)
                           +. .+++|+.|++++|..+..++....      .+..+++|+.|+++++ .++.+ |..                
T Consensus       146 -----l~-~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l-p~~----------------  201 (328)
T 4fcg_A          146 -----IA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL-PAS----------------  201 (328)
T ss_dssp             -----GG-GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC-CGG----------------
T ss_pred             -----Hh-cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc-hHh----------------
Confidence                 11 678888888888776665543210      1334777777777776 33332 222                


Q ss_pred             cchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEee
Q 044585          220 EENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKV  299 (352)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l  299 (352)
                                      ++.+++|++|+++++ .++.++.. +   ..+++|+.|++++|.....+|..+..+++|++|++
T Consensus       202 ----------------l~~l~~L~~L~L~~N-~l~~l~~~-l---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          202 ----------------IANLQNLKSLKIRNS-PLSALGPA-I---HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             ----------------GGGCTTCCEEEEESS-CCCCCCGG-G---GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             ----------------hcCCCCCCEEEccCC-CCCcCchh-h---ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence                            245678899999884 56666544 3   57899999999998888888888888999999999


Q ss_pred             cCCccccccccccccCccccccEEEEecccccceeccC
Q 044585          300 SKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQS  337 (352)
Q Consensus       300 ~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  337 (352)
                      ++|+....++.  .+..+++|+.|++++|+.+..++..
T Consensus       261 ~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          261 KDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             TTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CCCCchhhcch--hhhcCCCCCEEeCCCCCchhhccHH
Confidence            99988877754  3567889999999999887776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=5.5e-19  Score=162.51  Aligned_cols=260  Identities=14%  Similarity=0.152  Sum_probs=181.4

Q ss_pred             ecCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcc
Q 044585            5 EFPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLR   82 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~   82 (352)
                      .+++|++|++.+| .++.++. .+..+++|++|+++++.              +..++ ..+..+++|++|+++++. ++
T Consensus        67 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~~~~~~~~l~~L~~L~L~~n~-l~  130 (390)
T 3o6n_A           67 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA--------------IRYLPPHVFQNVPLLTVLVLERND-LS  130 (390)
T ss_dssp             HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred             ccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC--------------CCcCCHHHhcCCCCCCEEECCCCc-cC
Confidence            4799999999998 6777765 67899999999999543              33333 335678999999999887 77


Q ss_pred             eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeec
Q 044585           83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLR  162 (352)
Q Consensus        83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  162 (352)
                      .++... +  +.+++|++|++++| .+....+. .+..+++|++|++++|. ++.+ +..           .+++|+.|+
T Consensus       131 ~l~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~-~~~-----------~l~~L~~L~  192 (390)
T 3o6n_A          131 SLPRGI-F--HNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNR-LTHV-DLS-----------LIPSLFHAN  192 (390)
T ss_dssp             CCCTTT-T--TTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSSC-CSBC-CGG-----------GCTTCSEEE
T ss_pred             cCCHHH-h--cCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCCc-CCcc-ccc-----------cccccceee
Confidence            655443 2  35889999999998 56655443 36788999999999865 3332 111           678888888


Q ss_pred             cccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCC
Q 044585          163 LIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQ  241 (352)
Q Consensus       163 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~  241 (352)
                      ++++. +..       +...++|++|+++++ .+..+ +..   ..++|+.|+ ..+.++...          .++.+++
T Consensus       193 l~~n~-l~~-------~~~~~~L~~L~l~~n-~l~~~-~~~---~~~~L~~L~l~~n~l~~~~----------~l~~l~~  249 (390)
T 3o6n_A          193 VSYNL-LST-------LAIPIAVEELDASHN-SINVV-RGP---VNVELTILKLQHNNLTDTA----------WLLNYPG  249 (390)
T ss_dssp             CCSSC-CSE-------EECCSSCSEEECCSS-CCCEE-ECC---CCSSCCEEECCSSCCCCCG----------GGGGCTT
T ss_pred             ccccc-ccc-------cCCCCcceEEECCCC-eeeec-ccc---ccccccEEECCCCCCcccH----------HHcCCCC
Confidence            87642 222       334568888888887 45544 332   236788877 555555431          1456788


Q ss_pred             cceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcccccc
Q 044585          242 LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQ  321 (352)
Q Consensus       242 L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  321 (352)
                      |++|+++++ .++.+....+   ..+++|+.|+++++ .++.++.....+++|++|++++| .++.++.  ....+++|+
T Consensus       250 L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~  321 (390)
T 3o6n_A          250 LVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLE  321 (390)
T ss_dssp             CSEEECCSS-CCCEEESGGG---TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCS
T ss_pred             ccEEECCCC-cCCCcChhHc---cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc--cccccCcCC
Confidence            888888884 5565544444   57788888888887 56777766677888888888777 5566543  234577888


Q ss_pred             EEEEeccc
Q 044585          322 SMTIADCK  329 (352)
Q Consensus       322 ~L~i~~c~  329 (352)
                      .|++++|+
T Consensus       322 ~L~L~~N~  329 (390)
T 3o6n_A          322 NLYLDHNS  329 (390)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            88888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=9.1e-19  Score=169.88  Aligned_cols=262  Identities=14%  Similarity=0.158  Sum_probs=157.9

Q ss_pred             cCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcce
Q 044585            6 FPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      +++|++|++.+| .++.++. .+..+++|++|++++|              .+..++. .+..+++|++|+++++. ++.
T Consensus        74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~n~-l~~  137 (597)
T 3oja_B           74 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN--------------AIRYLPPHVFQNVPLLTVLVLERND-LSS  137 (597)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred             CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC--------------cCCCCCHHHHcCCCCCCEEEeeCCC-CCC
Confidence            556666666665 4544443 4556666666666633              2233332 23567777777777775 655


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      ++... +  +.+++|++|++++| .+...++. .+..+++|+.|++++|. +..+ +..           .+++|+.|++
T Consensus       138 l~~~~-~--~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~-~~~-----------~l~~L~~L~l  199 (597)
T 3oja_B          138 LPRGI-F--HNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNR-LTHV-DLS-----------LIPSLFHANV  199 (597)
T ss_dssp             CCTTT-T--TTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECTTSC-CSBC-CGG-----------GCTTCSEEEC
T ss_pred             CCHHH-h--ccCCCCCEEEeeCC-cCCCCChh-hhhcCCcCcEEECcCCC-CCCc-Chh-----------hhhhhhhhhc
Confidence            44332 1  24677777777777 45554442 25567777777777754 2222 111           3444444444


Q ss_pred             cccc------------------ccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhh
Q 044585          164 IDLP------------------KLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFL  224 (352)
Q Consensus       164 ~~~~------------------~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~  224 (352)
                      +++.                  .+..++.     ..+++|+.|.++++ .++.  +.. ...+++|+.|+ +.+.++.+.
T Consensus       200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n-~l~~--~~~-l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          200 SYNLLSTLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHN-NLTD--TAW-LLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             CSSCCSEEECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSS-CCCC--CGG-GGGCTTCSEEECCSSCCCEEE
T ss_pred             ccCccccccCCchhheeeccCCccccccc-----ccCCCCCEEECCCC-CCCC--Chh-hccCCCCCEEECCCCccCCCC
Confidence            3321                  1111111     12356777777776 3443  222 33678888887 666665543


Q ss_pred             hhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585          225 LAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       225 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~  304 (352)
                      +..        ++.+++|+.|++++ +.++.++...    ..+++|+.|++++| .++.+|..+..+++|++|++++|. 
T Consensus       271 ~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~----~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-  335 (597)
T 3oja_B          271 YHP--------FVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-  335 (597)
T ss_dssp             SGG--------GTTCSSCCEEECTT-SCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-
T ss_pred             HHH--------hcCccCCCEEECCC-CCCCCCCccc----ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-
Confidence            332        45678899999988 4666665443    36788999999887 566787777788899999997774 


Q ss_pred             ccccccccccCccccccEEEEeccc
Q 044585          305 LINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       305 l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      ++.++    +..+++|+.|++++++
T Consensus       336 l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          336 IVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCCCC----CCTTCCCSEEECCSSC
T ss_pred             CCCcC----hhhcCCCCEEEeeCCC
Confidence            45553    4557789999998865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=2.5e-18  Score=173.27  Aligned_cols=69  Identities=14%  Similarity=0.205  Sum_probs=37.5

Q ss_pred             ceeeeccCccceeEeccCCCcce-eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           61 YEVMIGFRDIEHLQLSHFPRLRE-IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        61 ~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      |..+.++++|++|++++|. ++. .+....+  +.+++|++|++++| .+....+...+.++++|++|++++|.
T Consensus        90 p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCG-LSDAVLKDGYF--RNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCC-CSSCCSTTCCC--SSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             HhHccCCcccCEeeCcCCC-CCcccccCccc--cccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc
Confidence            4455566666666666665 432 2221101  34667777777766 34443332335567777777776653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=9.4e-19  Score=164.79  Aligned_cols=80  Identities=24%  Similarity=0.290  Sum_probs=51.0

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRS  316 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  316 (352)
                      ..+++|++|+++++ .++.++.  +   ..+++|+.|++++| .++.++. +..+++|++|++++| .+++.++   ...
T Consensus       262 ~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~  329 (466)
T 1o6v_A          262 SGLTKLTELKLGAN-QISNISP--L---AGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISP---VSS  329 (466)
T ss_dssp             TTCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGG
T ss_pred             hcCCCCCEEECCCC-ccCcccc--c---cCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCchh---hcc
Confidence            44566666666663 4444432  2   46677777777776 3455543 567788888888776 4455433   456


Q ss_pred             cccccEEEEecc
Q 044585          317 LIILQSMTIADC  328 (352)
Q Consensus       317 l~~L~~L~i~~c  328 (352)
                      +++|+.|++++|
T Consensus       330 l~~L~~L~l~~n  341 (466)
T 1o6v_A          330 LTKLQRLFFYNN  341 (466)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CccCCEeECCCC
Confidence            778888888877

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=2.1e-19  Score=179.58  Aligned_cols=279  Identities=11%  Similarity=0.090  Sum_probs=175.4

Q ss_pred             eecCCccEEeccccccceE------------------eccCCC--CCCCceEEEecccccCcceeecCccchhhhhhcee
Q 044585            4 LEFPSLEQVSMTHCPNMKT------------------FSRGIS--STPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV   63 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~   63 (352)
                      .++++|++|++.+| .++.                  +|..++  .+++|++|++++             |.....+|..
T Consensus       445 ~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~-------------N~l~~~iP~~  510 (876)
T 4ecn_A          445 QRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN-------------CPNMTQLPDF  510 (876)
T ss_dssp             GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES-------------CTTCCSCCGG
T ss_pred             hcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC-------------CCCCccChHH
Confidence            46899999999999 5776                  888887  999999999994             4445567777


Q ss_pred             eeccCccceeEeccCCCcce--eccCCC-C--CCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee
Q 044585           64 MIGFRDIEHLQLSHFPRLRE--IWHGQA-V--PVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV  138 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~--~~~~~~-l--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  138 (352)
                      +..+++|+.|+++++..++.  +|.... +  ....+++|++|++++| .+...+....+..+++|+.|++++|.. ..+
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~l  588 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKV-RHL  588 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCC-CBC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCc-ccc
Confidence            78888888888888763432  322110 0  0023568888888887 455433212467788888888888653 344


Q ss_pred             eeeccccccccccCCCCcccCeeccccccccccccccCCceeeccC-cceEeeccCCCCcccccchhhhcc--CCCCCCC
Q 044585          139 LHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSE-LENLTIENCPDMETFISNSVVHVT--TNNKEPQ  215 (352)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~--~~L~~L~  215 (352)
                      +.+.           .+++|+.|+++++. +..++.   .+..+++ |+.|.++++. ++.+ |..+. ..  ++|+.|+
T Consensus       589 p~~~-----------~L~~L~~L~Ls~N~-l~~lp~---~l~~l~~~L~~L~Ls~N~-L~~l-p~~~~-~~~~~~L~~L~  650 (876)
T 4ecn_A          589 EAFG-----------TNVKLTDLKLDYNQ-IEEIPE---DFCAFTDQVEGLGFSHNK-LKYI-PNIFN-AKSVYVMGSVD  650 (876)
T ss_dssp             CCCC-----------TTSEESEEECCSSC-CSCCCT---TSCEECTTCCEEECCSSC-CCSC-CSCCC-TTCSSCEEEEE
T ss_pred             hhhc-----------CCCcceEEECcCCc-cccchH---HHhhccccCCEEECcCCC-CCcC-chhhh-ccccCCCCEEE
Confidence            3222           56677777776654 233332   3455565 6666666663 3333 33221 11  2244444


Q ss_pred             -CC-----------------------------CccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccc-
Q 044585          216 -KL-----------------------------TSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESN-  264 (352)
Q Consensus       216 -~~-----------------------------~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-  264 (352)
                       +.                             +.++.++...        +..+++|+.|+++++ .++.++...+... 
T Consensus       651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~--------~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~  721 (876)
T 4ecn_A          651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL--------FATGSPISTIILSNN-LMTSIPENSLKPKD  721 (876)
T ss_dssp             CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH--------HHTTCCCSEEECCSC-CCSCCCTTSSSCTT
T ss_pred             CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH--------HccCCCCCEEECCCC-cCCccChHHhcccc
Confidence             32                             3333222111        124678888888884 6666765543100 


Q ss_pred             ---cccCCcceEEEecCCCcccccCCcc--CCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          265 ---KAFANLKSLEIFECSKLQKLVPASW--HLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       265 ---~~~~~L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                         ..+++|+.|++++| .++.+|..+.  .+++|++|++++| .++.+|.  .+..+++|+.|++++++
T Consensus       722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             SCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCB
T ss_pred             ccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCC
Confidence               12238999999888 6678887766  8899999999776 4555643  34578889999998743

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.2e-18  Score=168.94  Aligned_cols=253  Identities=16%  Similarity=0.151  Sum_probs=177.1

Q ss_pred             eeecCCccEEeccccccceEeccC-CCCCCCceEEEecccccCcceeecCccchhhhhhceee-eccCccceeEeccCCC
Q 044585            3 TLEFPSLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVM-IGFRDIEHLQLSHFPR   80 (352)
Q Consensus         3 ~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~   80 (352)
                      ...+++|++|++.+| .++.++.. +..+++|++|++++|              .+..+|..+ ..+++|++|+++++. 
T Consensus        95 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~l~~~~~~~l~~L~~L~Ls~N~-  158 (597)
T 3oja_B           95 FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN--------------DLSSLPRGIFHNTPKLTTLSMSNNN-  158 (597)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             hcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC--------------CCCCCCHHHhccCCCCCEEEeeCCc-
Confidence            345889999999999 67766654 578999999999954              344555443 578999999999887 


Q ss_pred             cceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeee---cccc----ccccccCC
Q 044585           81 LREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHL---EELN----AKEEHIGP  153 (352)
Q Consensus        81 l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~----~~~~~~~~  153 (352)
                      ++.++... +  +.+++|++|++++| .+....    +..+++|+.|+++++. +..+...   ..+.    ........
T Consensus       159 l~~~~~~~-~--~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          159 LERIEDDT-F--QATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             CCBCCTTT-T--TTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC-CSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             CCCCChhh-h--hcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc-cccccCCchhheeeccCCcccccccc
Confidence            66544332 2  35889999999988 455542    3357788888887753 3322110   0000    00111111


Q ss_pred             CCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCC
Q 044585          154 RFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPL  232 (352)
Q Consensus       154 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~  232 (352)
                      ..++|+.|+++++. +...    ..+..+++|+.|+++++ .+..+.|..+. .+++|+.|+ +.+.++.++..      
T Consensus       230 ~~~~L~~L~L~~n~-l~~~----~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~------  296 (597)
T 3oja_B          230 VNVELTILKLQHNN-LTDT----AWLLNYPGLVEVDLSYN-ELEKIMYHPFV-KMQRLERLYISNNRLVALNLY------  296 (597)
T ss_dssp             CCSCCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCEEESGGGT-TCSSCCEEECTTSCCCEEECS------
T ss_pred             cCCCCCEEECCCCC-CCCC----hhhccCCCCCEEECCCC-ccCCCCHHHhc-CccCCCEEECCCCCCCCCCcc------
Confidence            45689999998874 3332    14677899999999998 56666555554 889999999 77777765433      


Q ss_pred             CCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585          233 FDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       233 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~  304 (352)
                         .+.+++|+.|+++++ .++.++...    ..+++|+.|++++| .+..++  +..+++|+.|++++++-
T Consensus       297 ---~~~l~~L~~L~Ls~N-~l~~i~~~~----~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          297 ---GQPIPTLKVLDLSHN-HLLHVERNQ----PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             ---SSCCTTCCEEECCSS-CCCCCGGGH----HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred             ---cccCCCCcEEECCCC-CCCccCccc----ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCC
Confidence               245799999999995 666776543    47899999999998 456664  56889999999988764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=1.9e-18  Score=167.91  Aligned_cols=87  Identities=21%  Similarity=0.191  Sum_probs=47.4

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcc-cccCCccCCCCCcEEeecCCccccccccccccC
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQ-KLVPASWHLENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      ..+++|++|++++|. ++......+   ..+++|++|++++|.... .+|..+..+++|++|++++| .++..++ ..+.
T Consensus       421 ~~l~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~  494 (606)
T 3vq2_A          421 LSLEKLLYLDISYTN-TKIDFDGIF---LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFD  494 (606)
T ss_dssp             TTCTTCCEEECTTSC-CEECCTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTT
T ss_pred             hccccCCEEECcCCC-CCccchhhh---cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhc
Confidence            344555555555542 232222223   455666666666663222 14555666677777777666 3444433 2345


Q ss_pred             ccccccEEEEeccc
Q 044585          316 SLIILQSMTIADCK  329 (352)
Q Consensus       316 ~l~~L~~L~i~~c~  329 (352)
                      .+++|+.|++++|.
T Consensus       495 ~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          495 TLHRLQLLNMSHNN  508 (606)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             ccccCCEEECCCCc
Confidence            66777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=2.9e-18  Score=154.12  Aligned_cols=269  Identities=13%  Similarity=0.139  Sum_probs=186.4

Q ss_pred             cCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585            6 FPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .+++++|++.+| .++.++. .+..+++|++|++++|              .+..+ |..+..+++|++|+++++. ++.
T Consensus        51 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~  114 (330)
T 1xku_A           51 PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN--------------KISKISPGAFAPLVKLERLYLSKNQ-LKE  114 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS--------------CCCCBCTTTTTTCTTCCEEECCSSC-CSB
T ss_pred             CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC--------------cCCeeCHHHhcCCCCCCEEECCCCc-CCc
Confidence            368999999998 6777765 5788999999999954              23333 4556688999999999887 766


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      ++..      .+++|++|++++| .+....+ ..+..+++|+.|++++|..-..       ......+. .+++|+.|++
T Consensus       115 l~~~------~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~-~l~~L~~L~l  178 (330)
T 1xku_A          115 LPEK------MPKTLQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTNPLKSS-------GIENGAFQ-GMKKLSYIRI  178 (330)
T ss_dssp             CCSS------CCTTCCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSSCCCGG-------GBCTTGGG-GCTTCCEEEC
T ss_pred             cChh------hcccccEEECCCC-cccccCH-hHhcCCccccEEECCCCcCCcc-------CcChhhcc-CCCCcCEEEC
Confidence            4443      3579999999998 5665443 4477899999999998754211       00011122 6889999999


Q ss_pred             ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585          164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL  242 (352)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L  242 (352)
                      +++. ++.++..     .+++|+.|+++++ .++.+.+..+ ..+++|+.|+ ..+.++.+....        +..+++|
T Consensus       179 ~~n~-l~~l~~~-----~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L  242 (330)
T 1xku_A          179 ADTN-ITTIPQG-----LPPSLTELHLDGN-KITKVDAASL-KGLNNLAKLGLSFNSISAVDNGS--------LANTPHL  242 (330)
T ss_dssp             CSSC-CCSCCSS-----CCTTCSEEECTTS-CCCEECTGGG-TTCTTCCEEECCSSCCCEECTTT--------GGGSTTC
T ss_pred             CCCc-cccCCcc-----ccccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCceeChhh--------ccCCCCC
Confidence            8764 4444331     2379999999988 4666544444 4788999998 666666554321        4668899


Q ss_pred             ceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-cc------CCCCCcEEeecCCccccccccccccC
Q 044585          243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SW------HLENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~------~~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      ++|+++++ .++.++...    ..+++|+.|+++++ .++.++.. +.      ..+.|+.+++.+++..........+.
T Consensus       243 ~~L~L~~N-~l~~lp~~l----~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          243 RELHLNNN-KLVKVPGGL----ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             CEEECCSS-CCSSCCTTT----TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CEEECCCC-cCccCChhh----ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            99999995 677776543    47899999999988 56666532 21      24788999998886533222224566


Q ss_pred             ccccccEEEEecc
Q 044585          316 SLIILQSMTIADC  328 (352)
Q Consensus       316 ~l~~L~~L~i~~c  328 (352)
                      .+.+++.++++++
T Consensus       317 ~~~~l~~l~L~~N  329 (330)
T 1xku_A          317 CVYVRAAVQLGNY  329 (330)
T ss_dssp             TCCCGGGEEC---
T ss_pred             cccceeEEEeccc
Confidence            7788888888765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=9.6e-19  Score=164.04  Aligned_cols=141  Identities=13%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      ++++|++|++.+| .++.+| .+..+++|++|++++|.+.+              ++  +..+++|++|+++++. ++.+
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~--------------~~--~~~l~~L~~L~Ls~N~-l~~~  100 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITT--------------LD--LSQNTNLTYLACDSNK-LTNL  100 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSC--------------CC--CTTCTTCSEEECCSSC-CSCC
T ss_pred             HcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCe--------------Ec--cccCCCCCEEECcCCC-Ccee
Confidence            4789999999998 777776 57889999999999654433              22  4456777777777665 5543


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      +  .    +.+++|++|++++| .+... +   +..+++|++|++++|. ++.+ ++.           .+++|+.|+++
T Consensus       101 ~--~----~~l~~L~~L~L~~N-~l~~l-~---~~~l~~L~~L~l~~N~-l~~l-~l~-----------~l~~L~~L~l~  156 (457)
T 3bz5_A          101 D--V----TPLTKLTYLNCDTN-KLTKL-D---VSQNPLLTYLNCARNT-LTEI-DVS-----------HNTQLTELDCH  156 (457)
T ss_dssp             C--C----TTCTTCCEEECCSS-CCSCC-C---CTTCTTCCEEECTTSC-CSCC-CCT-----------TCTTCCEEECT
T ss_pred             e--c----CCCCcCCEEECCCC-cCCee-c---CCCCCcCCEEECCCCc-ccee-ccc-----------cCCcCCEEECC
Confidence            2  1    34667777777776 44443 2   3456677777776654 2222 111           45555555555


Q ss_pred             cccccccccccCCceeeccCcceEeeccC
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                      ++..+..+     .+..+++|+.|+++++
T Consensus       157 ~n~~~~~~-----~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          157 LNKKITKL-----DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             TCSCCCCC-----CCTTCTTCCEEECCSS
T ss_pred             CCCccccc-----ccccCCcCCEEECCCC
Confidence            55443333     1233455555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=1.9e-18  Score=162.74  Aligned_cols=269  Identities=16%  Similarity=0.233  Sum_probs=148.0

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+++|++|++.+| .++.++. +..+++|++|++++|.+....              . +..+++|++|+++++. ++..
T Consensus        66 ~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--------------~-~~~l~~L~~L~L~~n~-l~~~  127 (466)
T 1o6v_A           66 YLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADIT--------------P-LANLTNLTGLTLFNNQ-ITDI  127 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG--------------G-GTTCTTCCEEECCSSC-CCCC
T ss_pred             hhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccCh--------------h-hcCCCCCCEEECCCCC-CCCC
Confidence            4788999999888 6777766 778888888888865433322              1 3344444444444443 3322


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCc------------------hhhhcCCCCcEEEEccCCCcceeeeeccccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPT------------------NLLRCLNNLRCLEVRNCDLIEEVLHLEELNA  146 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~------------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  146 (352)
                      +. .    ..+++|++|++++| .+......                  ..+..+++|++|++++|. +..+..+.....
T Consensus       128 ~~-~----~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~  200 (466)
T 1o6v_A          128 DP-L----KNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTN  200 (466)
T ss_dssp             GG-G----TTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTT
T ss_pred             hH-H----cCCCCCCEEECCCC-ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCC
Confidence            11 0    12344444444433 12211100                  012344445555554433 111111100000


Q ss_pred             ----------c--ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCC
Q 044585          147 ----------K--EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEP  214 (352)
Q Consensus       147 ----------~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  214 (352)
                                .  ...++ .+++|+.|+++++. ++.+    +.+..+++|+.|++++| .++...+   ...+++|+.|
T Consensus       201 L~~L~l~~n~l~~~~~~~-~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L  270 (466)
T 1o6v_A          201 LESLIATNNQISDITPLG-ILTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANN-QISNLAP---LSGLTKLTEL  270 (466)
T ss_dssp             CSEEECCSSCCCCCGGGG-GCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEE
T ss_pred             CCEEEecCCccccccccc-ccCCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCC-ccccchh---hhcCCCCCEE
Confidence                      0  00001 34444444444432 2211    12344566666666665 3333322   3355666666


Q ss_pred             C-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCC
Q 044585          215 Q-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLEN  293 (352)
Q Consensus       215 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~  293 (352)
                      + ..+.++.+..          +..+++|+.|+++++ .++.++.  +   ..+++|+.|++++| .++.++. +..+++
T Consensus       271 ~l~~n~l~~~~~----------~~~l~~L~~L~L~~n-~l~~~~~--~---~~l~~L~~L~L~~n-~l~~~~~-~~~l~~  332 (466)
T 1o6v_A          271 KLGANQISNISP----------LAGLTALTNLELNEN-QLEDISP--I---SNLKNLTYLTLYFN-NISDISP-VSSLTK  332 (466)
T ss_dssp             ECCSSCCCCCGG----------GTTCTTCSEEECCSS-CCSCCGG--G---GGCTTCSEEECCSS-CCSCCGG-GGGCTT
T ss_pred             ECCCCccCcccc----------ccCCCccCeEEcCCC-cccCchh--h---cCCCCCCEEECcCC-cCCCchh-hccCcc
Confidence            6 4444443322          456789999999995 5665553  3   58899999999998 4565554 578999


Q ss_pred             CcEEeecCCccccccccccccCccccccEEEEecccc
Q 044585          294 LEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKR  330 (352)
Q Consensus       294 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~  330 (352)
                      |++|++++| .++.++   ....+++|+.|++++|..
T Consensus       333 L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          333 LQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCC
T ss_pred             CCEeECCCC-ccCCch---hhccCCCCCEEeCCCCcc
Confidence            999999888 566653   456789999999998853

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.79  E-value=3.2e-18  Score=153.94  Aligned_cols=269  Identities=14%  Similarity=0.146  Sum_probs=188.4

Q ss_pred             cCCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585            6 FPSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .++|++|++.+| .++.++. .+..+++|++|++++|              .+..+ |..+..+++|++|+++++. ++.
T Consensus        53 ~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~n~-l~~  116 (332)
T 2ft3_A           53 SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN--------------KISKIHEKAFSPLRKLQKLYISKNH-LVE  116 (332)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--------------CCCEECGGGSTTCTTCCEEECCSSC-CCS
T ss_pred             CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC--------------ccCccCHhHhhCcCCCCEEECCCCc-CCc
Confidence            468999999998 6777754 6789999999999954              23333 4556789999999999887 766


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      ++...      +++|++|++++| .+...++ ..+..+++|++|+++++..-..  .     .....+. .+ +|+.|++
T Consensus       117 l~~~~------~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~-----~~~~~~~-~l-~L~~L~l  179 (332)
T 2ft3_A          117 IPPNL------PSSLVELRIHDN-RIRKVPK-GVFSGLRNMNCIEMGGNPLENS--G-----FEPGAFD-GL-KLNYLRI  179 (332)
T ss_dssp             CCSSC------CTTCCEEECCSS-CCCCCCS-GGGSSCSSCCEEECCSCCCBGG--G-----SCTTSSC-SC-CCSCCBC
T ss_pred             cCccc------cccCCEEECCCC-ccCccCH-hHhCCCccCCEEECCCCccccC--C-----CCccccc-CC-ccCEEEC
Confidence            44433      489999999998 5665443 4467899999999998753210  0     0001111 34 8899999


Q ss_pred             ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585          164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL  242 (352)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L  242 (352)
                      +++. ++.++..     .+++|++|+++++ .++.+.+..+ ..+++|+.|+ ..+.++.+....        +..+++|
T Consensus       180 ~~n~-l~~l~~~-----~~~~L~~L~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~--------~~~l~~L  243 (332)
T 2ft3_A          180 SEAK-LTGIPKD-----LPETLNELHLDHN-KIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGS--------LSFLPTL  243 (332)
T ss_dssp             CSSB-CSSCCSS-----SCSSCSCCBCCSS-CCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTG--------GGGCTTC
T ss_pred             cCCC-CCccCcc-----ccCCCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCCcCChhH--------hhCCCCC
Confidence            8764 4444332     2379999999987 5666534444 4789999999 767776654322        4668999


Q ss_pred             ceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-cc------CCCCCcEEeecCCccccccccccccC
Q 044585          243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SW------HLENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~------~~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      ++|+++++ .++.++.. +   ..+++|+.|+++++ .++.++.. +.      ..++|+.|++.+++..........+.
T Consensus       244 ~~L~L~~N-~l~~lp~~-l---~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          244 RELHLDNN-KLSRVPAG-L---PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             CEEECCSS-CCCBCCTT-G---GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             CEEECCCC-cCeecChh-h---hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence            99999994 77777765 3   58899999999997 56666532 22      25789999999887542222334677


Q ss_pred             ccccccEEEEeccc
Q 044585          316 SLIILQSMTIADCK  329 (352)
Q Consensus       316 ~l~~L~~L~i~~c~  329 (352)
                      .+++|+.+++.++.
T Consensus       318 ~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          318 CVTDRLAIQFGNYK  331 (332)
T ss_dssp             TBCCSTTEEC----
T ss_pred             ccchhhhhhccccc
Confidence            88999999998875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=3.1e-19  Score=161.98  Aligned_cols=279  Identities=13%  Similarity=0.141  Sum_probs=169.2

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcce
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .|+.....+..++ +++.+|..+  .++|++|+++++              .+..++. .+..+++|++|+++++. ++.
T Consensus        29 ~C~~~~~c~~~~~-~l~~iP~~~--~~~L~~L~l~~n--------------~i~~~~~~~~~~l~~L~~L~L~~n~-l~~   90 (353)
T 2z80_A           29 SCDRNGICKGSSG-SLNSIPSGL--TEAVKSLDLSNN--------------RITYISNSDLQRCVNLQALVLTSNG-INT   90 (353)
T ss_dssp             EECTTSEEECCST-TCSSCCTTC--CTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEECTTSC-CCE
T ss_pred             CCCCCeEeeCCCC-Ccccccccc--cccCcEEECCCC--------------cCcccCHHHhccCCCCCEEECCCCc-cCc
Confidence            4566666666655 677777655  358888888843              2333333 34577888888888776 665


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      +.... +  +.+++|++|++++| .+...+ ...+..+++|++|++++|. ++.++...       .+. .+++|+.|++
T Consensus        91 ~~~~~-~--~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~-------~~~-~l~~L~~L~l  156 (353)
T 2z80_A           91 IEEDS-F--SSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGETS-------LFS-HLTKLQILRV  156 (353)
T ss_dssp             ECTTT-T--TTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSSC-------SCT-TCTTCCEEEE
T ss_pred             cCHhh-c--CCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCchh-------hhc-cCCCCcEEEC
Confidence            54332 2  35778888888887 455543 3336678888888888764 33332200       111 6778888888


Q ss_pred             ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585          164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL  242 (352)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L  242 (352)
                      +++..++.+...  .+..+++|++|+++++ .++...+..+. .+++|++|+ ..+.++.+....        ...+++|
T Consensus       157 ~~n~~~~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~--------~~~~~~L  224 (353)
T 2z80_A          157 GNMDTFTKIQRK--DFAGLTFLEELEIDAS-DLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIF--------VDVTSSV  224 (353)
T ss_dssp             EESSSCCEECTT--TTTTCCEEEEEEEEET-TCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHH--------HHHTTTE
T ss_pred             CCCccccccCHH--HccCCCCCCEEECCCC-CcCccCHHHHh-ccccCCeecCCCCccccchhhh--------hhhcccc
Confidence            877555544321  3456778888888877 45554344443 677777777 555555444321        2346788


Q ss_pred             ceeecccccccccccccccccccccCCcceEEEecCCC----cccccCCccCCCCCcEEeecCCccccccccccccCccc
Q 044585          243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSK----LQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLI  318 (352)
Q Consensus       243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  318 (352)
                      ++|+++++ .++.++...++.....+.++.+++.++.-    +..+|..+..+++|++|+++++ +++.++. .++..++
T Consensus       225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~  301 (353)
T 2z80_A          225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLT  301 (353)
T ss_dssp             EEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred             cEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCC
Confidence            88888884 55554433332223456677777776531    1235555667788888888666 5566643 3456677


Q ss_pred             cccEEEEecccc
Q 044585          319 ILQSMTIADCKR  330 (352)
Q Consensus       319 ~L~~L~i~~c~~  330 (352)
                      +|++|++++++-
T Consensus       302 ~L~~L~L~~N~~  313 (353)
T 2z80_A          302 SLQKIWLHTNPW  313 (353)
T ss_dssp             TCCEEECCSSCB
T ss_pred             CCCEEEeeCCCc
Confidence            888888887653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=3.4e-18  Score=168.37  Aligned_cols=236  Identities=13%  Similarity=0.103  Sum_probs=150.1

Q ss_pred             CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585           68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK  147 (352)
Q Consensus        68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  147 (352)
                      +.|+.|+++++. ++.+.... +  ..+++|++|++++| .+....+...+..+++|++|++++|. +..+..       
T Consensus       381 ~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------  447 (680)
T 1ziw_A          381 SPLHILNLTKNK-ISKIESDA-F--SWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR-------  447 (680)
T ss_dssp             SCCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCT-------
T ss_pred             CcCceEECCCCC-CCeEChhh-h--hCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeCh-------
Confidence            355666666554 44332222 1  24667777777776 34333333335567777777777764 222110       


Q ss_pred             ccccCCCCcccCeeccccccc--cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhh
Q 044585          148 EEHIGPRFPRLNRLRLIDLPK--LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFL  224 (352)
Q Consensus       148 ~~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~  224 (352)
                       ..+. .+++|+.|++.++.-  +...+.   .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ +.+.++.+.
T Consensus       448 -~~~~-~~~~L~~L~l~~n~l~~~~~~p~---~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          448 -NSFA-LVPSLQRLMLRRVALKNVDSSPS---PFQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNNLARLW  520 (680)
T ss_dssp             -TTTT-TCTTCCEEECTTSCCBCTTCSSC---TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred             -hhhh-cCcccccchhccccccccccCCc---ccccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCCccccc
Confidence             1112 577888888876542  111121   4567889999999887 56665 444445788999998 777776653


Q ss_pred             hhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCCc
Q 044585          225 LAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKCH  303 (352)
Q Consensus       225 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~  303 (352)
                      ...........++.+++|+.|++++ +.++.++...+   ..+++|+.|+++++ .++.+|.. +..+++|++|+++++ 
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-  594 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVF---KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-  594 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred             hhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHc---ccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-
Confidence            3211101112256788999999999 57778887766   68899999999887 67778764 468899999999877 


Q ss_pred             cccccccccccCccccccEEEEeccc
Q 044585          304 RLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       304 ~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      +++.+++......+++|+.++++++|
T Consensus       595 ~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          595 LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             cCCccChhHhcccccccCEEEccCCC
Confidence            67776543222257889999998744

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=1.2e-18  Score=163.48  Aligned_cols=263  Identities=13%  Similarity=0.070  Sum_probs=136.9

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      ..+++|++|++.+| .++.++  +..+++|++|++++|.+.+.              +  +..+++|++|+++++. ++.
T Consensus        61 ~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~--------------~--~~~l~~L~~L~L~~N~-l~~  120 (457)
T 3bz5_A           61 EKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNL--------------D--VTPLTKLTYLNCDTNK-LTK  120 (457)
T ss_dssp             GGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCC--------------C--CTTCTTCCEEECCSSC-CSC
T ss_pred             cccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCcee--------------e--cCCCCcCCEEECCCCc-CCe
Confidence            45789999999998 677775  77899999999996543332              2  4466777777777765 554


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      ++  .    +.+++|++|++++| .+... +   +..+++|++|++++|..+..+ .+.           .+++|+.|++
T Consensus       121 l~--~----~~l~~L~~L~l~~N-~l~~l-~---l~~l~~L~~L~l~~n~~~~~~-~~~-----------~l~~L~~L~l  177 (457)
T 3bz5_A          121 LD--V----SQNPLLTYLNCARN-TLTEI-D---VSHNTQLTELDCHLNKKITKL-DVT-----------PQTQLTTLDC  177 (457)
T ss_dssp             CC--C----TTCTTCCEEECTTS-CCSCC-C---CTTCTTCCEEECTTCSCCCCC-CCT-----------TCTTCCEEEC
T ss_pred             ec--C----CCCCcCCEEECCCC-cccee-c---cccCCcCCEEECCCCCccccc-ccc-----------cCCcCCEEEC
Confidence            33  1    34667777777766 34443 2   335666777777666544332 111           3444444444


Q ss_pred             ccccccccccccC----------------CceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhh
Q 044585          164 IDLPKLKRFCNFT----------------GNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLA  226 (352)
Q Consensus       164 ~~~~~l~~~~~~~----------------~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~  226 (352)
                      +++. ++.++...                ..+..+++|+.|+++++ .++.+ |   ...+++|+.|+ ..+.++.++..
T Consensus       178 s~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N-~l~~i-p---~~~l~~L~~L~l~~N~l~~~~~~  251 (457)
T 3bz5_A          178 SFNK-ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN-KLTEI-D---VTPLTQLTYFDCSVNPLTELDVS  251 (457)
T ss_dssp             CSSC-CCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSS-CCSCC-C---CTTCTTCSEEECCSSCCSCCCCT
T ss_pred             CCCc-cceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCC-ccccc-C---ccccCCCCEEEeeCCcCCCcCHH
Confidence            4331 22211000                01334455556655555 33332 3   22455555555 44444433211


Q ss_pred             cccCCCCCccc-ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC--------CccCCCCCcEE
Q 044585          227 HQVQPLFDEKL-TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP--------ASWHLENLEAL  297 (352)
Q Consensus       227 ~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--------~~~~~~~L~~L  297 (352)
                      . . ..++.+. ...+|+.|++++|..+..++.      ..+++|+.|++++|..++.+|.        .+..+++|++|
T Consensus       252 ~-l-~~L~~L~l~~n~L~~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L  323 (457)
T 3bz5_A          252 T-L-SKLTTLHCIQTDLLEIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL  323 (457)
T ss_dssp             T-C-TTCCEEECTTCCCSCCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred             H-C-CCCCEEeccCCCCCEEECCCCccCCcccc------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence            0 0 0000000 001334444444443333331      2457777777777765555542        12344556666


Q ss_pred             eecCCccccccccccccCccccccEEEEecc
Q 044585          298 KVSKCHRLINLLTLSTSRSLIILQSMTIADC  328 (352)
Q Consensus       298 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  328 (352)
                      +++++ +++.++    ...+++|+.|+++++
T Consensus       324 ~L~~N-~l~~l~----l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          324 YLNNT-ELTELD----VSHNTKLKSLSCVNA  349 (457)
T ss_dssp             ECTTC-CCSCCC----CTTCTTCSEEECCSS
T ss_pred             ECCCC-cccccc----cccCCcCcEEECCCC
Confidence            66443 344431    445677777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=3.7e-19  Score=158.77  Aligned_cols=234  Identities=15%  Similarity=0.064  Sum_probs=114.8

Q ss_pred             hceeeeccCccceeEeccCCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCccee
Q 044585           60 CYEVMIGFRDIEHLQLSHFPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEV  138 (352)
Q Consensus        60 l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  138 (352)
                      +|..+..+++|++|+++++..+. .++...    +.+++|++|++++| .+....|.. +..+++|++|++++|.....+
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~  141 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEESCC
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCccCCcC
Confidence            34444455555555555322132 212111    23455555555554 333223322 444555555555554322111


Q ss_pred             eeeccccccccccCCCCcccCeeccccccccccccccCCceeecc-CcceEeeccCCCCcccccchhhhccCCCCCCC-C
Q 044585          139 LHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELS-ELENLTIENCPDMETFISNSVVHVTTNNKEPQ-K  216 (352)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~  216 (352)
                      +..         +. .+++|++|+++++.-...++.   .+..++ +|+.|+++++ .++...|..+. .++ |+.|+ .
T Consensus       142 p~~---------~~-~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N-~l~~~~~~~~~-~l~-L~~L~Ls  205 (313)
T 1ogq_A          142 PPS---------IS-SLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRN-RLTGKIPPTFA-NLN-LAFVDLS  205 (313)
T ss_dssp             CGG---------GG-GCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSS-EEEEECCGGGG-GCC-CSEEECC
T ss_pred             ChH---------Hh-cCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCC-eeeccCChHHh-CCc-ccEEECc
Confidence            110         11 455555555554432112221   233333 5555655555 23322233332 333 55555 4


Q ss_pred             CCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcE
Q 044585          217 LTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEA  296 (352)
Q Consensus       217 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~  296 (352)
                      .+.++......        ++.+++|+.|+++++ .++..... +   ..+++|++|+++++.-...+|..+..+++|++
T Consensus       206 ~N~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~-~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          206 RNMLEGDASVL--------FGSDKNTQKIHLAKN-SLAFDLGK-V---GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             SSEEEECCGGG--------CCTTSCCSEEECCSS-EECCBGGG-C---CCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             CCcccCcCCHH--------HhcCCCCCEEECCCC-ceeeecCc-c---cccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence            44444322221        345677888888874 33332222 2   46678888888877433366667777888888


Q ss_pred             EeecCCccccccccccccCccccccEEEEeccccc
Q 044585          297 LKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRI  331 (352)
Q Consensus       297 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l  331 (352)
                      |++++++--..+|.   ...+++|+.+++.+++.+
T Consensus       273 L~Ls~N~l~~~ip~---~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          273 LNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EECCSSEEEEECCC---STTGGGSCGGGTCSSSEE
T ss_pred             EECcCCcccccCCC---CccccccChHHhcCCCCc
Confidence            88877744334433   155677777777777644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=2.2e-18  Score=165.55  Aligned_cols=107  Identities=20%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             CcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhh-cccCCCCCcccccCCcceeecccccccccccc--c
Q 044585          184 ELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLA-HQVQPLFDEKLTFPQLKELKLSRLHKVQHLWK--E  259 (352)
Q Consensus       184 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~  259 (352)
                      +|+.|.++++ .++.+ |..+...+++|+.|+ +.+.++..... ...      ++.+++|++|+++++ .++.++.  .
T Consensus       311 ~L~~L~l~~n-~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~  381 (549)
T 2z81_A          311 KVKRITVENS-KVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSAC------KGAWPSLQTLVLSQN-HLRSMQKTGE  381 (549)
T ss_dssp             TCCEEEEESS-CCCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTC------TTSSTTCCEEECTTS-CCCCHHHHHH
T ss_pred             cceEEEeccC-ccccC-CHHHHhcCccccEEEccCCccccccccchhh------hhccccCcEEEccCC-cccccccchh
Confidence            4555555554 23333 555555678888887 55555543321 111      245677888888774 5554432  2


Q ss_pred             ccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585          260 NDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       260 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      .+   ..+++|++|++++| +++.+|..+..+++|++|++++|.
T Consensus       382 ~~---~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          382 IL---LTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             HG---GGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC
T ss_pred             hh---hcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC
Confidence            22   46777788888777 566777666667777777776653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=3.5e-18  Score=163.03  Aligned_cols=83  Identities=18%  Similarity=0.163  Sum_probs=52.1

Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcc
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSL  317 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  317 (352)
                      .+++|++|+++++..-...+ ..     ..++|+.|++++| +++.+|..+..+++|++|++++| +++.++.. .+..+
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~-~~-----l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l  467 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIF-RC-----LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG-IFDRL  467 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGG-GS-----CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTC
T ss_pred             cCccCCEEECcCCCCCcchh-hh-----hcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH-HhccC
Confidence            34556666666542222222 11     1257777777776 56677776667888888888776 56666443 45667


Q ss_pred             ccccEEEEeccc
Q 044585          318 IILQSMTIADCK  329 (352)
Q Consensus       318 ~~L~~L~i~~c~  329 (352)
                      ++|+.|++++++
T Consensus       468 ~~L~~L~l~~N~  479 (520)
T 2z7x_B          468 TSLQKIWLHTNP  479 (520)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CcccEEECcCCC
Confidence            888888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=1.1e-17  Score=159.66  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=55.4

Q ss_pred             cccCCcceeeccccccccc-ccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccC
Q 044585          237 LTFPQLKELKLSRLHKVQH-LWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      +.+++|++|+++++ .++. ++...+   ..+++|+.|++++|.-...+|..+.  ++|++|++++| +++.++. .+ .
T Consensus       371 ~~l~~L~~L~Ls~N-~l~~~l~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~-~~-~  441 (520)
T 2z7x_B          371 TQMKSLQQLDISQN-SVSYDEKKGDC---SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPK-QV-V  441 (520)
T ss_dssp             TTCTTCCEEECCSS-CCBCCGGGCSC---CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCG-GG-G
T ss_pred             hhCCCCCEEECCCC-cCCcccccchh---ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccch-hh-h
Confidence            45667777777774 3443 554444   4667777777777743334443322  68888888766 5566643 22 3


Q ss_pred             ccccccEEEEecccccceec
Q 044585          316 SLIILQSMTIADCKRIEEII  335 (352)
Q Consensus       316 ~l~~L~~L~i~~c~~l~~~~  335 (352)
                      .+++|+.|++++| .++.+.
T Consensus       442 ~l~~L~~L~L~~N-~l~~l~  460 (520)
T 2z7x_B          442 KLEALQELNVASN-QLKSVP  460 (520)
T ss_dssp             GCTTCCEEECCSS-CCCCCC
T ss_pred             cCCCCCEEECCCC-cCCccC
Confidence            7888999999887 344443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=1.1e-17  Score=161.23  Aligned_cols=59  Identities=20%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             CCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          268 ANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       268 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      ++|+.|+++++ .++.+|..+..+++|++|+++++ +++.++.. .+..+++|+.|++++++
T Consensus       450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred             CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCC
Confidence            56777777776 56677766667778888888665 55666442 45667778888877754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=7e-18  Score=162.64  Aligned_cols=266  Identities=17%  Similarity=0.142  Sum_probs=178.8

Q ss_pred             cEEeccccccce-EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCC
Q 044585           10 EQVSMTHCPNMK-TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus        10 ~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      +.+.+.++..+. ..+..+..+++|++|+++++              .+..+|..+..+ +|++|+++++. +..     
T Consensus       260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------------~l~~l~~~~~~~-~L~~L~l~~n~-~~~-----  318 (570)
T 2z63_A          260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV--------------TIERVKDFSYNF-GWQHLELVNCK-FGQ-----  318 (570)
T ss_dssp             EEEEEEETTEEESCSTTTTGGGTTCSEEEEESC--------------EECSCCBCCSCC-CCSEEEEESCB-CSS-----
T ss_pred             hhhhhhcchhhhhhchhhhcCcCcccEEEecCc--------------cchhhhhhhccC-CccEEeeccCc-ccc-----
Confidence            444454443332 34455667889999999843              344566666677 89999999887 554     


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK  168 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  168 (352)
                       +|...+++|++|++.+|. .....+.   ..+++|++|++++|.. .......      ..+. .+++|+.|+++++. 
T Consensus       319 -l~~~~l~~L~~L~l~~n~-~~~~~~~---~~~~~L~~L~l~~n~l-~~~~~~~------~~~~-~~~~L~~L~l~~n~-  384 (570)
T 2z63_A          319 -FPTLKLKSLKRLTFTSNK-GGNAFSE---VDLPSLEFLDLSRNGL-SFKGCCS------QSDF-GTTSLKYLDLSFNG-  384 (570)
T ss_dssp             -CCBCBCSSCCEEEEESCB-SCCBCCC---CBCTTCCEEECCSSCC-BEEEEEE------HHHH-TCSCCCEEECCSCS-
T ss_pred             -cCcccccccCEEeCcCCc-ccccccc---ccCCCCCEEeCcCCcc-Ccccccc------cccc-ccCccCEEECCCCc-
Confidence             333468899999999884 3333332   4788999999988753 3221100      0111 68899999998874 


Q ss_pred             cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeec
Q 044585          169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKL  247 (352)
Q Consensus       169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  247 (352)
                      +..+..   .+..+++|++|+++++. +....+...+..+++|+.|+ ..+.+.......        +..+++|++|++
T Consensus       385 l~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l  452 (570)
T 2z63_A          385 VITMSS---NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSLEVLKM  452 (570)
T ss_dssp             EEEEEE---EEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTT--------TTTCTTCCEEEC
T ss_pred             cccccc---cccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhh--------hhcCCcCcEEEC
Confidence            333332   35678899999998873 44433434455788888888 555555433221        456789999999


Q ss_pred             cccccc-ccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCccccccEEEE
Q 044585          248 SRLHKV-QHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTI  325 (352)
Q Consensus       248 ~~~~~l-~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i  325 (352)
                      ++|... ..++ ..+   ..+++|+.|++++|. ++.+ |..+..+++|++|++++| +++.+++ ..+..+++|+.|++
T Consensus       453 ~~n~l~~~~~p-~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l  525 (570)
T 2z63_A          453 AGNSFQENFLP-DIF---TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPD-GIFDRLTSLQKIWL  525 (570)
T ss_dssp             TTCEEGGGEEC-SCC---TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEEC
T ss_pred             cCCcCccccch-hhh---hcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCH-HHhhcccCCcEEEe
Confidence            996433 2344 333   578999999999984 5555 667788999999999877 5666644 35677899999999


Q ss_pred             eccc
Q 044585          326 ADCK  329 (352)
Q Consensus       326 ~~c~  329 (352)
                      ++++
T Consensus       526 ~~N~  529 (570)
T 2z63_A          526 HTNP  529 (570)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            9865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=1.3e-17  Score=160.73  Aligned_cols=138  Identities=10%  Similarity=0.104  Sum_probs=97.9

Q ss_pred             eeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccc-cc
Q 044585          180 IELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQH-LW  257 (352)
Q Consensus       180 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~  257 (352)
                      ..+++|+.|+++++ .++...|..+ ..+++|+.|+ ..+.++.+......      ++.+++|++|+++++ .++. ++
T Consensus       350 ~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~------~~~l~~L~~L~l~~N-~l~~~~~  420 (562)
T 3a79_B          350 PSPSSFTFLNFTQN-VFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALM------TKNMSSLETLDVSLN-SLNSHAY  420 (562)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHT------TTTCTTCCEEECTTS-CCBSCCS
T ss_pred             cCCCCceEEECCCC-ccccchhhhh-cccCCCCEEECCCCCcCCcccchhh------hcCCCCCCEEECCCC-cCCCccC
Confidence            56789999999998 4555445554 3788999998 66677654321111      356789999999995 4555 77


Q ss_pred             ccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecccccceec
Q 044585          258 KENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIEEII  335 (352)
Q Consensus       258 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~  335 (352)
                      ...+   ..+++|+.|++++|.-...+|..+.  ++|++|++++| +++.++. ... .+++|+.|+++++. ++.+.
T Consensus       421 ~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~-~~~-~l~~L~~L~L~~N~-l~~l~  489 (562)
T 3a79_B          421 DRTC---AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPK-DVT-HLQALQELNVASNQ-LKSVP  489 (562)
T ss_dssp             SCCC---CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCT-TTT-SSCCCSEEECCSSC-CCCCC
T ss_pred             hhhh---cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccCh-hhc-CCCCCCEEECCCCC-CCCCC
Confidence            6655   6789999999999853344443322  79999999877 6777754 333 78999999999874 44444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=3.9e-18  Score=163.78  Aligned_cols=112  Identities=16%  Similarity=0.234  Sum_probs=58.3

Q ss_pred             CCccEEeccccccceEe-ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            7 PSLEQVSMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      ++|++|++.+| .++.+ +..+..+++|++|++++|.+....             |..+..+++|++|+++++. ++..+
T Consensus        26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-------------~~~~~~l~~L~~L~Ls~n~-l~~~~   90 (549)
T 2z81_A           26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIE-------------GDAFYSLGSLEHLDLSDNH-LSSLS   90 (549)
T ss_dssp             TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECTTSC-CCSCC
T ss_pred             CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccC-------------hhhccccccCCEEECCCCc-cCccC
Confidence            57888888887 46655 345677888888888854322211             1233455566666666554 43322


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE  137 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~  137 (352)
                      ... +  +.+++|++|++++| .+........+..+++|++|++++|..+..
T Consensus        91 ~~~-~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  138 (549)
T 2z81_A           91 SSW-F--GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSE  138 (549)
T ss_dssp             HHH-H--TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             HHH-h--ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccc
Confidence            211 1  23555666666555 233221111234555566666655543333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=1.2e-17  Score=148.35  Aligned_cols=243  Identities=14%  Similarity=0.096  Sum_probs=125.6

Q ss_pred             EEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-eeccCccceeEeccCCCcceec---c
Q 044585           11 QVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MIGFRDIEHLQLSHFPRLREIW---H   86 (352)
Q Consensus        11 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~---~   86 (352)
                      .++..+. +++.+|..+  .++|++|+++++              .+..+|.. +..+++|++|+++++. ++...   .
T Consensus        11 ~l~c~~~-~l~~ip~~~--~~~l~~L~L~~n--------------~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~   72 (306)
T 2z66_A           11 EIRCNSK-GLTSVPTGI--PSSATRLELESN--------------KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQ   72 (306)
T ss_dssp             EEECCSS-CCSSCCSCC--CTTCCEEECCSS--------------CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEH
T ss_pred             EEEcCCC-CcccCCCCC--CCCCCEEECCCC--------------ccCccCHhHhhccccCCEEECCCCc-cCcccCccc
Confidence            3444443 455555443  356666666632              22333332 2355666666666554 43221   1


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      ..    ..+++|++|++++| .+...+. . +..+++|++|+++++. +..++..       ..+. .+++|+.|+++++
T Consensus        73 ~~----~~~~~L~~L~Ls~n-~i~~l~~-~-~~~l~~L~~L~l~~n~-l~~~~~~-------~~~~-~l~~L~~L~l~~n  136 (306)
T 2z66_A           73 SD----FGTTSLKYLDLSFN-GVITMSS-N-FLGLEQLEHLDFQHSN-LKQMSEF-------SVFL-SLRNLIYLDISHT  136 (306)
T ss_dssp             HH----HSCSCCCEEECCSC-SEEEEEE-E-EETCTTCCEEECTTSE-EESSTTT-------TTTT-TCTTCCEEECTTS
T ss_pred             cc----ccccccCEEECCCC-ccccChh-h-cCCCCCCCEEECCCCc-ccccccc-------hhhh-hccCCCEEECCCC
Confidence            11    13456666666665 3333221 1 3456666666666643 2111110       0111 4566666666654


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcc-cccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcce
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMET-FISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKE  244 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~  244 (352)
                      . +......  .+..+++|+.|.++++. +.. ..|..+ ..+++|+.|+ +.+.++.+....        ++.+++|++
T Consensus       137 ~-l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~  203 (306)
T 2z66_A          137 H-TRVAFNG--IFNGLSSLEVLKMAGNS-FQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTA--------FNSLSSLQV  203 (306)
T ss_dssp             C-CEECSTT--TTTTCTTCCEEECTTCE-EGGGEECSCC-TTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCE
T ss_pred             c-CCccchh--hcccCcCCCEEECCCCc-cccccchhHH-hhCcCCCEEECCCCCcCCcCHHH--------hcCCCCCCE
Confidence            3 2211110  23445666666666653 222 223332 2556666665 444444432221        345678888


Q ss_pred             eecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCC-CCcEEeecCCcc
Q 044585          245 LKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLE-NLEALKVSKCHR  304 (352)
Q Consensus       245 L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~~  304 (352)
                      |+++++ .++.++...+   ..+++|+.|+++++.-....+..+..++ +|++|++++++-
T Consensus       204 L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          204 LNMSHN-NFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             EECTTS-CCSBCCSGGG---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             EECCCC-ccCccChhhc---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            888884 5666655444   5678888888888844334445566664 888888877754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=5.6e-17  Score=159.73  Aligned_cols=134  Identities=15%  Similarity=0.152  Sum_probs=81.5

Q ss_pred             eccCcceEeeccCCCCc--ccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccc
Q 044585          181 ELSELENLTIENCPDME--TFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLW  257 (352)
Q Consensus       181 ~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  257 (352)
                      .+++|+.|.+.++. ++  ...|..+ ..+++|+.|+ +.+.++.+....        ++.+++|++|+++++ .++.++
T Consensus       452 ~~~~L~~L~l~~n~-l~~~~~~p~~~-~~l~~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~Ls~N-~l~~~~  520 (680)
T 1ziw_A          452 LVPSLQRLMLRRVA-LKNVDSSPSPF-QPLRNLTILDLSNNNIANINDDM--------LEGLEKLEILDLQHN-NLARLW  520 (680)
T ss_dssp             TCTTCCEEECTTSC-CBCTTCSSCTT-TTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCGGGG
T ss_pred             cCcccccchhcccc-ccccccCCccc-ccCCCCCEEECCCCCCCcCChhh--------hccccccCEEeCCCC-Cccccc
Confidence            34555555555542 11  1113333 2556666666 555555433321        355678888888873 555553


Q ss_pred             ccccc-----cccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccCccccccEEEEecc
Q 044585          258 KENDE-----SNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADC  328 (352)
Q Consensus       258 ~~~~~-----~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  328 (352)
                      ...++     ....+++|+.|+++++ .++.+|. .+..+++|++|+++++ +++.+++ ..+..+++|+.|+++++
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA-SVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred             hhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCH-hHhCCCCCCCEEECCCC
Confidence            32110     0146788888888887 5667775 3678889999999554 6777754 45667888999999887

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=5.6e-18  Score=151.12  Aligned_cols=251  Identities=13%  Similarity=0.099  Sum_probs=171.7

Q ss_pred             CCccEEeccccccce---EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcc-
Q 044585            7 PSLEQVSMTHCPNMK---TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLR-   82 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-   82 (352)
                      .++++|++.++ .++   .+|..+..+++|++|+++++            +.-...+|..+..+++|++|+++++. ++ 
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~------------n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~  115 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGI------------NNLVGPIPPAIAKLTQLHYLYITHTN-VSG  115 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEE------------TTEESCCCGGGGGCTTCSEEEEEEEC-CEE
T ss_pred             ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCC------------CcccccCChhHhcCCCCCEEECcCCe-eCC
Confidence            57889999988 454   67888888999999999831            23334567777889999999999887 54 


Q ss_pred             eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCc-ccCee
Q 044585           83 EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFP-RLNRL  161 (352)
Q Consensus        83 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L  161 (352)
                      ..+...    ..+++|++|++++| .+....|.. +..+++|++|++++|.....++...         . .++ +|+.|
T Consensus       116 ~~p~~~----~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l---------~-~l~~~L~~L  179 (313)
T 1ogq_A          116 AIPDFL----SQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSY---------G-SFSKLFTSM  179 (313)
T ss_dssp             ECCGGG----GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGG---------G-CCCTTCCEE
T ss_pred             cCCHHH----hCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHH---------h-hhhhcCcEE
Confidence            433333    46889999999988 455444433 6788999999999876432332211         1 565 88999


Q ss_pred             ccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccC
Q 044585          162 RLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFP  240 (352)
Q Consensus       162 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~  240 (352)
                      +++++.-...++.   .+..++ |+.|+++++ .++...+..+ ..+++|+.|+ ..+.++.....         +..++
T Consensus       180 ~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~---------~~~l~  244 (313)
T 1ogq_A          180 TISRNRLTGKIPP---TFANLN-LAFVDLSRN-MLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK---------VGLSK  244 (313)
T ss_dssp             ECCSSEEEEECCG---GGGGCC-CSEEECCSS-EEEECCGGGC-CTTSCCSEEECCSSEECCBGGG---------CCCCT
T ss_pred             ECcCCeeeccCCh---HHhCCc-ccEEECcCC-cccCcCCHHH-hcCCCCCEEECCCCceeeecCc---------ccccC
Confidence            9887653323222   233444 999999887 4554434444 3778888888 66666543333         34578


Q ss_pred             Ccceeecccccccc-cccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585          241 QLKELKLSRLHKVQ-HLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       241 ~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      +|++|+++++ .++ .++ ..+   ..+++|+.|+++++.-...+|.. ..+++|+.+++.+++.+...
T Consensus       245 ~L~~L~Ls~N-~l~~~~p-~~l---~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          245 NLNGLDLRNN-RIYGTLP-QGL---TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TCCEEECCSS-CCEECCC-GGG---GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             CCCEEECcCC-cccCcCC-hHH---hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            9999999985 444 444 334   57889999999988443356654 78889999999888877654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=4.9e-18  Score=154.07  Aligned_cols=257  Identities=15%  Similarity=0.162  Sum_probs=178.4

Q ss_pred             CCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCccee
Q 044585            7 PSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      ++|++|++.+| .++.++. .+..+++|++|+++++              .+..+ +..+..+++|++|+++++. ++.+
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  115 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN--------------GINTIEEDSFSSLGSLEHLDLSYNY-LSNL  115 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEECCSSC-CSSC
T ss_pred             ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC--------------ccCccCHhhcCCCCCCCEEECCCCc-CCcC
Confidence            58999999998 6887776 6789999999999954              23333 2345678999999999887 6654


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      +... +  +.+++|++|++++| .+...+....+..+++|++|++++|..++.++..        .+. .+++|+.|+++
T Consensus       116 ~~~~-~--~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------~~~-~l~~L~~L~l~  182 (353)
T 2z80_A          116 SSSW-F--KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK--------DFA-GLTFLEELEID  182 (353)
T ss_dssp             CHHH-H--TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--------TTT-TCCEEEEEEEE
T ss_pred             CHhH-h--CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH--------Hcc-CCCCCCEEECC
Confidence            4331 1  35889999999998 5665544234678999999999998766665321        112 68899999998


Q ss_pred             cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcc
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLK  243 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~  243 (352)
                      ++. +..+...  .+..+++|++|+++++. ++.+ +......+++|+.|+ +.+.++......     +......+.++
T Consensus       183 ~n~-l~~~~~~--~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----l~~~~~~~~l~  252 (353)
T 2z80_A          183 ASD-LQSYEPK--SLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTDLDTFHFSE-----LSTGETNSLIK  252 (353)
T ss_dssp             ETT-CCEECTT--TTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCBCTTCCCC-----------CCCCCC
T ss_pred             CCC-cCccCHH--HHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCccccccccc-----cccccccchhh
Confidence            765 3333211  45678899999999884 5554 556665789999998 666665433221     11122345677


Q ss_pred             eeeccccc----ccccccccccccccccCCcceEEEecCCCcccccCCc-cCCCCCcEEeecCCccccc
Q 044585          244 ELKLSRLH----KVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPAS-WHLENLEALKVSKCHRLIN  307 (352)
Q Consensus       244 ~L~l~~~~----~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~  307 (352)
                      .++++++.    .+..++.. +   ..+++|+.|+++++ .++.+|..+ ..+++|++|++++++-..+
T Consensus       253 ~l~L~~~~l~~~~l~~l~~~-l---~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          253 KFTFRNVKITDESLFQVMKL-L---NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             EEEEESCBCCHHHHHHHHHH-H---HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccccccccccCcchhhhHHH-H---hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            77777642    12223322 2   57899999999998 677888764 7899999999988864433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.73  E-value=6.4e-17  Score=151.14  Aligned_cols=205  Identities=21%  Similarity=0.242  Sum_probs=104.9

Q ss_pred             eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc
Q 044585           64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE  143 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  143 (352)
                      +..+++|++|+++++. ++.+.... +  ..+++|++|++++| .+...++ ..+..+++|++|++++|. ++.++..  
T Consensus        84 ~~~l~~L~~L~Ls~n~-i~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~--  154 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNH-IRTIEIGA-F--NGLANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNNP-IESIPSY--  154 (440)
T ss_dssp             TSSCSSCCEEECCSSC-CCEECGGG-G--TTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSCC-CCEECTT--
T ss_pred             hhCCCCCCEEECCCCc-CCccChhh-c--cCCccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCCc-ccccCHH--
Confidence            3455666666666655 44433222 1  23566666666665 4444332 224456666666666643 3332110  


Q ss_pred             ccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccch
Q 044585          144 LNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEEN  222 (352)
Q Consensus       144 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~  222 (352)
                            .+. .+++|+.|++.++..+..+...  .+..+++|+.|+++++ .++.+ |.  ...+++|+.|+ +.+.++.
T Consensus       155 ------~~~-~l~~L~~L~l~~~~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          155 ------AFN-RIPSLRRLDLGELKRLSYISEG--AFEGLSNLRYLNLAMC-NLREI-PN--LTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             ------TTT-TCTTCCEEECCCCTTCCEECTT--TTTTCSSCCEEECTTS-CCSSC-CC--CTTCSSCCEEECTTSCCCE
T ss_pred             ------Hhh-hCcccCEeCCCCCCCcceeCcc--hhhcccccCeecCCCC-cCccc-cc--cCCCcccCEEECCCCccCc
Confidence                  011 4566666666665555443321  2444566666666665 34433 21  22455555555 4444444


Q ss_pred             hhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecC
Q 044585          223 FLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSK  301 (352)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~  301 (352)
                      +....        +..+++|+.|++++ +.++.+....+   ..+++|+.|+++++ .++.++. .+..+++|+.|++++
T Consensus       222 ~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          222 IRPGS--------FQGLMHLQKLWMIQ-SQIQVIERNAF---DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             ECTTT--------TTTCTTCCEEECTT-CCCCEECTTSS---TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred             cChhh--------hccCccCCEEECCC-CceeEEChhhh---cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence            33221        34456666666666 35555554444   45666666666665 4454443 234566666666655


Q ss_pred             Cc
Q 044585          302 CH  303 (352)
Q Consensus       302 c~  303 (352)
                      ++
T Consensus       289 Np  290 (440)
T 3zyj_A          289 NP  290 (440)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=1.1e-16  Score=161.22  Aligned_cols=276  Identities=16%  Similarity=0.159  Sum_probs=170.5

Q ss_pred             cCCccEEeccccccceEe-ccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585            6 FPSLEQVSMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .+++++|++.+| .++.+ +..+..+++|++|++++|             ..+..+ |..+.++++|++|+++++. +..
T Consensus        23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n-------------~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~   87 (844)
T 3j0a_A           23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQ-------------YTPLTIDKEAFRNLPNLRILDLGSSK-IYF   87 (844)
T ss_dssp             CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTT-------------CCCCEECTTTTSSCTTCCEEECTTCC-CCE
T ss_pred             CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCC-------------CCccccCHHHhcCCCCCCEEECCCCc-Ccc
Confidence            478999999998 66655 567889999999999943             234444 4566789999999999987 666


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCccc-CCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeec
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSA-IPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLR  162 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  162 (352)
                      ..... +  +.+++|++|++++| .+... +....+..+++|++|++++|......+.        ..++ .+++|+.|+
T Consensus        88 ~~p~~-~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--------~~~~-~L~~L~~L~  154 (844)
T 3j0a_A           88 LHPDA-F--QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--------PSFG-KLNSLKSID  154 (844)
T ss_dssp             ECTTS-S--CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--------GGGG-TCSSCCEEE
T ss_pred             cCHhH-c--cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccc--------hhHh-hCCCCCEEE
Confidence            53332 2  46899999999998 45543 3333367899999999999764322111        0112 678888888


Q ss_pred             cccccccccccccCCceeec--cCcceEeeccCCCCcccccchhhhccC------CCCCCC-C-----------------
Q 044585          163 LIDLPKLKRFCNFTGNIIEL--SELENLTIENCPDMETFISNSVVHVTT------NNKEPQ-K-----------------  216 (352)
Q Consensus       163 l~~~~~l~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~~~~~~~~~~------~L~~L~-~-----------------  216 (352)
                      ++++. +......  .+..+  ++|+.|.++++.- ....+..+. .++      +|+.|+ +                 
T Consensus       155 Ls~N~-i~~~~~~--~l~~l~~~~L~~L~L~~n~l-~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  229 (844)
T 3j0a_A          155 FSSNQ-IFLVCEH--ELEPLQGKTLSFFSLAANSL-YSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS  229 (844)
T ss_dssp             EESSC-CCCCCSG--GGHHHHHCSSCCCEECCSBS-CCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred             CCCCc-CCeeCHH--HcccccCCccceEECCCCcc-ccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence            87653 2211110  12222  4455555544421 111111111 111      133333 1                 


Q ss_pred             ---------------------------------------------CCccchhhhhcccCCCCCcccccCCcceeeccccc
Q 044585          217 ---------------------------------------------LTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLH  251 (352)
Q Consensus       217 ---------------------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  251 (352)
                                                                   .+.+..+..        ..++.+++|+.|++++ +
T Consensus       230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~-n  300 (844)
T 3j0a_A          230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--------RVFETLKDLKVLNLAY-N  300 (844)
T ss_dssp             SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS--------CCSSSCCCCCEEEEES-C
T ss_pred             cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh--------hhhhcCCCCCEEECCC-C
Confidence                                                         111111110        1144567777777777 3


Q ss_pred             ccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          252 KVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       252 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      .++.++...+   ..+++|+.|+++++. ++.+ +..+..+++|++|+++++ .++.+++ ..+..+++|+.|+++++.
T Consensus       301 ~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          301 KINKIADEAF---YGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CCCEECTTTT---TTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC
T ss_pred             cCCCCChHHh---cCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC
Confidence            5555555555   577888888888874 4444 556778888999999777 5666643 356778899999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=1.5e-16  Score=153.97  Aligned_cols=242  Identities=14%  Similarity=0.124  Sum_probs=144.1

Q ss_pred             CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccC
Q 044585            8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHG   87 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~   87 (352)
                      ++++|++.++ .++.+|..+.  ++|++|++++|              .+..+|.   .+++|++|++++|. ++.    
T Consensus        41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N--------------~l~~lp~---~l~~L~~L~Ls~N~-l~~----   95 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN--------------NLTSLPA---LPPELRTLEVSGNQ-LTS----   95 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSC--------------CCSCCCC---CCTTCCEEEECSCC-CSC----
T ss_pred             CCcEEEecCC-CcCccChhhC--CCCcEEEecCC--------------CCCCCCC---cCCCCCEEEcCCCc-CCc----
Confidence            5778888877 6777777664  78888888843              3334444   45677777777765 554    


Q ss_pred             CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585           88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP  167 (352)
Q Consensus        88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  167 (352)
                        +|. .+++|++|++++| .+...+.     .+++|+.|++++|. +..++.             .+++|+.|+++++.
T Consensus        96 --lp~-~l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N~-l~~lp~-------------~l~~L~~L~Ls~N~  152 (622)
T 3g06_A           96 --LPV-LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQ-LTSLPV-------------LPPGLQELSVSDNQ  152 (622)
T ss_dssp             --CCC-CCTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSC
T ss_pred             --CCC-CCCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCCC-CCcCCC-------------CCCCCCEEECcCCc
Confidence              332 4567777777776 4444332     35566667666653 322211             23455555555442


Q ss_pred             ccccccccCCce--------------eeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCC
Q 044585          168 KLKRFCNFTGNI--------------IELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPL  232 (352)
Q Consensus       168 ~l~~~~~~~~~~--------------~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~  232 (352)
                       ++.++.....+              ..+++|+.|+++++ .++.+ |.    ..++|+.|+ ..+.++.++        
T Consensus       153 -l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l-~~----~~~~L~~L~L~~N~l~~l~--------  217 (622)
T 3g06_A          153 -LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASL-PT----LPSELYKLWAYNNRLTSLP--------  217 (622)
T ss_dssp             -CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC-CC----CCTTCCEEECCSSCCSSCC--------
T ss_pred             -CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCC-CC----ccchhhEEECcCCcccccC--------
Confidence             22221100000              12355555655554 33332 21    124555554 333333222        


Q ss_pred             CCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccccc
Q 044585          233 FDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLS  312 (352)
Q Consensus       233 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~  312 (352)
                          ..+++|+.|+++++ .++.++       ..+++|+.|++++| .++.+|.   .+++|++|++++| +++.+|.  
T Consensus       218 ----~~~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~--  278 (622)
T 3g06_A          218 ----ALPSGLKELIVSGN-RLTSLP-------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE--  278 (622)
T ss_dssp             ----CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG--
T ss_pred             ----CCCCCCCEEEccCC-ccCcCC-------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH--
Confidence                12468899999884 667665       35688999999987 6777775   6789999999777 6667753  


Q ss_pred             ccCccccccEEEEeccccc
Q 044585          313 TSRSLIILQSMTIADCKRI  331 (352)
Q Consensus       313 ~~~~l~~L~~L~i~~c~~l  331 (352)
                      .+..+++|+.|++++++.-
T Consensus       279 ~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCC
T ss_pred             HHhhccccCEEEecCCCCC
Confidence            3667889999999988643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=1.1e-16  Score=150.04  Aligned_cols=242  Identities=21%  Similarity=0.228  Sum_probs=140.5

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      +.++..+. +++.+|..+  .+++++|+++++              .+..+ +..+..+++|++|+++++. ++.+....
T Consensus        57 ~~v~c~~~-~l~~iP~~~--~~~l~~L~L~~n--------------~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~  118 (452)
T 3zyi_A           57 SKVVCTRR-GLSEVPQGI--PSNTRYLNLMEN--------------NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA  118 (452)
T ss_dssp             CEEECCSS-CCSSCCSCC--CTTCSEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred             cEEEECCC-CcCccCCCC--CCCccEEECcCC--------------cCceECHHHcCCCCCCCEEECCCCc-cCCcChhh
Confidence            34444333 455566544  357777777743              22222 2334567777777777765 55544332


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK  168 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  168 (352)
                       +  ..+++|++|++++| .+...++ ..+..+++|++|++++|. ++.++.        ..+. .+++|+.|++.++..
T Consensus       119 -~--~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~l~~~~~  183 (452)
T 3zyi_A          119 -F--NGLASLNTLELFDN-WLTVIPS-GAFEYLSKLRELWLRNNP-IESIPS--------YAFN-RVPSLMRLDLGELKK  183 (452)
T ss_dssp             -T--TTCTTCCEEECCSS-CCSBCCT-TTSSSCTTCCEEECCSCC-CCEECT--------TTTT-TCTTCCEEECCCCTT
T ss_pred             -c--cCcccCCEEECCCC-cCCccCh-hhhcccCCCCEEECCCCC-cceeCH--------hHHh-cCCcccEEeCCCCCC
Confidence             2  24677777777776 4554433 335567777777777754 333321        0111 567777777777666


Q ss_pred             cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeec
Q 044585          169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKL  247 (352)
Q Consensus       169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  247 (352)
                      ++.+...  .+..+++|+.|+++++ .++.+ |.  ...+++|+.|+ +.+.++.+....        +..+++|+.|++
T Consensus       184 l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L  249 (452)
T 3zyi_A          184 LEYISEG--AFEGLFNLKYLNLGMC-NIKDM-PN--LTPLVGLEELEMSGNHFPEIRPGS--------FHGLSSLKKLWV  249 (452)
T ss_dssp             CCEECTT--TTTTCTTCCEEECTTS-CCSSC-CC--CTTCTTCCEEECTTSCCSEECGGG--------GTTCTTCCEEEC
T ss_pred             ccccChh--hccCCCCCCEEECCCC-ccccc-cc--ccccccccEEECcCCcCcccCccc--------ccCccCCCEEEe
Confidence            6654332  2455677777777776 44443 21  23556666666 555555543322        355677777777


Q ss_pred             ccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585          248 SRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH  303 (352)
Q Consensus       248 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  303 (352)
                      ++ +.++.+....+   ..+++|+.|+++++ .++.++. .+..+++|++|++.+++
T Consensus       250 ~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          250 MN-SQVSLIERNAF---DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TT-SCCCEECTTTT---TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CC-CcCceECHHHh---cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            77 35565555555   56677777777776 4555553 34567777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=8.9e-17  Score=150.69  Aligned_cols=237  Identities=14%  Similarity=0.150  Sum_probs=177.5

Q ss_pred             chhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      +..+..+|..+.  +++++|+++++. ++.+.... +  ..+++|++|++++| .+....+. .+..+++|++|++++|.
T Consensus        63 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           63 RRGLSEVPQGIP--SNTRYLNLMENN-IQMIQADT-F--RHLHHLEVLQLGRN-SIRQIEVG-AFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SSCCSSCCSCCC--TTCSEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             CCCcCccCCCCC--CCccEEECcCCc-CceECHHH-c--CCCCCCCEEECCCC-ccCCcChh-hccCcccCCEEECCCCc
Confidence            345566675443  789999999987 77664443 3  36899999999998 56665543 37789999999999975


Q ss_pred             CcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCC
Q 044585          134 LIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKE  213 (352)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  213 (352)
                       +..++.        ..+. .+++|+.|+++++. ++.+...  .+..+++|+.|++++|..++.+ +...+..+++|+.
T Consensus       135 -l~~~~~--------~~~~-~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~  200 (452)
T 3zyi_A          135 -LTVIPS--------GAFE-YLSKLRELWLRNNP-IESIPSY--AFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKY  200 (452)
T ss_dssp             -CSBCCT--------TTSS-SCTTCCEEECCSCC-CCEECTT--TTTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCE
T ss_pred             -CCccCh--------hhhc-ccCCCCEEECCCCC-cceeCHh--HHhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCE
Confidence             444322        1112 68899999998864 4444322  4667899999999999888887 5555558899999


Q ss_pred             CC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCC
Q 044585          214 PQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHL  291 (352)
Q Consensus       214 L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~  291 (352)
                      |+ +.+.++.++          .+..+++|++|++++ +.++.+....+   ..+++|+.|+++++. ++.+ +..+..+
T Consensus       201 L~L~~n~l~~~~----------~~~~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l  265 (452)
T 3zyi_A          201 LNLGMCNIKDMP----------NLTPLVGLEELEMSG-NHFPEIRPGSF---HGLSSLKKLWVMNSQ-VSLIERNAFDGL  265 (452)
T ss_dssp             EECTTSCCSSCC----------CCTTCTTCCEEECTT-SCCSEECGGGG---TTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred             EECCCCcccccc----------cccccccccEEECcC-CcCcccCcccc---cCccCCCEEEeCCCc-CceECHHHhcCC
Confidence            98 666666542          246688999999999 46777766666   688999999999984 5554 4567889


Q ss_pred             CCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          292 ENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       292 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      ++|++|+++++ +++.++. ..+..+++|+.|++.++|
T Consensus       266 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          266 ASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence            99999999877 6777754 456778999999998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=148.93  Aligned_cols=237  Identities=14%  Similarity=0.176  Sum_probs=178.3

Q ss_pred             chhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      +..+..+|..+.  ++++.|+++++. ++.++... +  ..+++|++|++++| .+....+ ..+..+++|++|++++|.
T Consensus        52 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           52 RKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             SCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSC
T ss_pred             CCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCc
Confidence            445667776544  789999999987 77665443 3  36899999999998 5666544 347789999999999974


Q ss_pred             CcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCC
Q 044585          134 LIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKE  213 (352)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  213 (352)
                       ++.++.        ..+. .+++|+.|+++++. ++.+...  .+..+++|+.|++.++..+..+ +...+.++++|+.
T Consensus       124 -l~~~~~--------~~~~-~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~  189 (440)
T 3zyj_A          124 -LTTIPN--------GAFV-YLSKLKELWLRNNP-IESIPSY--AFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRY  189 (440)
T ss_dssp             -CSSCCT--------TTSC-SCSSCCEEECCSCC-CCEECTT--TTTTCTTCCEEECCCCTTCCEE-CTTTTTTCSSCCE
T ss_pred             -CCeeCH--------hHhh-ccccCceeeCCCCc-ccccCHH--HhhhCcccCEeCCCCCCCccee-CcchhhcccccCe
Confidence             444322        1122 68899999998864 4443321  4567899999999999888876 5555558899999


Q ss_pred             CC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCccccc-CCccCC
Q 044585          214 PQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV-PASWHL  291 (352)
Q Consensus       214 L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~  291 (352)
                      |+ ..+.++.++          .+..+++|++|+++++ .++.+....+   ..+++|+.|+++++ .++.++ ..+..+
T Consensus       190 L~L~~n~l~~~~----------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l  254 (440)
T 3zyj_A          190 LNLAMCNLREIP----------NLTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQS-QIQVIERNAFDNL  254 (440)
T ss_dssp             EECTTSCCSSCC----------CCTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTC-CCCEECTTSSTTC
T ss_pred             ecCCCCcCcccc----------ccCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCC-ceeEEChhhhcCC
Confidence            98 666666443          2466889999999995 7777766666   68999999999998 456554 467889


Q ss_pred             CCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          292 ENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       292 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      ++|++|+++++ +++.++. ..+..+++|+.|+++++|
T Consensus       255 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          255 QSLVEINLAHN-NLTLLPH-DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence            99999999877 6777754 456778999999998854

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=153.85  Aligned_cols=250  Identities=11%  Similarity=0.082  Sum_probs=180.1

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+++|++|++.+| .++.+|..+..+ +|++|++++|.              +..+|.  ..+++|++|+++++..... 
T Consensus       280 ~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~--------------~~~l~~--~~l~~L~~L~l~~n~~~~~-  340 (570)
T 2z63_A          280 CLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCK--------------FGQFPT--LKLKSLKRLTFTSNKGGNA-  340 (570)
T ss_dssp             GGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCB--------------CSSCCB--CBCSSCCEEEEESCBSCCB-
T ss_pred             CcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCc--------------ccccCc--ccccccCEEeCcCCccccc-
Confidence            4799999999998 777888888888 99999999543              334444  3689999999999873322 


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCC-chhhhcCCCCcEEEEccCCCcceeee-eccccccccccCCCCcccCeec
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIP-TNLLRCLNNLRCLEVRNCDLIEEVLH-LEELNAKEEHIGPRFPRLNRLR  162 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~  162 (352)
                           ++...+++|++|++++| .+..... ...+..+++|++|++++|.. ..++. +.           .+++|+.|+
T Consensus       341 -----~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~-----------~l~~L~~L~  402 (570)
T 2z63_A          341 -----FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFL-----------GLEQLEHLD  402 (570)
T ss_dssp             -----CCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEE-----------TCTTCCEEE
T ss_pred             -----cccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcc-cccccccc-----------ccCCCCEEE
Confidence                 22246899999999998 4544321 23367899999999999763 33322 22           789999999


Q ss_pred             cccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCC
Q 044585          163 LIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQ  241 (352)
Q Consensus       163 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~  241 (352)
                      +.++. +....... .+..+++|+.|++++| .+....+..+ ..+++|+.|+ ..+.++....+.       .++.+++
T Consensus       403 l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~p~-------~~~~l~~  471 (570)
T 2z63_A          403 FQHSN-LKQMSEFS-VFLSLRNLIYLDISHT-HTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPD-------IFTELRN  471 (570)
T ss_dssp             CTTSE-EESCTTSC-TTTTCTTCCEEECTTS-CCEECCTTTT-TTCTTCCEEECTTCEEGGGEECS-------CCTTCTT
T ss_pred             ccCCc-cccccchh-hhhcCCCCCEEeCcCC-cccccchhhh-hcCCcCcEEECcCCcCccccchh-------hhhcccC
Confidence            99865 33322211 3567899999999998 4555434444 4789999998 665554211111       1467899


Q ss_pred             cceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccc
Q 044585          242 LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLIN  307 (352)
Q Consensus       242 L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~  307 (352)
                      |++|++++| .++.+....+   ..+++|+.|++++| .++.++. .+..+++|++|++++++--.+
T Consensus       472 L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          472 LTFLDLSQC-QLEQLSPTAF---NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCEEECCCC-ccccCChhhh---hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            999999996 6666655555   68899999999998 5666654 567899999999988764433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=1.8e-18  Score=154.65  Aligned_cols=244  Identities=16%  Similarity=0.133  Sum_probs=157.4

Q ss_pred             CCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC
Q 044585           28 SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC  106 (352)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c  106 (352)
                      ..+++|++|+++++              .+..++ ..+..+++|++|+++++. ++.... .    ..+++|++|++++|
T Consensus        31 ~~~~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~----~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           31 QSAWNVKELDLSGN--------------PLSQISAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN   90 (317)
T ss_dssp             TTGGGCSEEECTTS--------------CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-E----TTCTTCCEEECCSS
T ss_pred             ccCCCCCEEECcCC--------------ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-h----hhcCCCCEEECcCC
Confidence            45667888888843              222222 344567788888888776 543322 2    35778888888877


Q ss_pred             CCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcc
Q 044585          107 TNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELE  186 (352)
Q Consensus       107 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~  186 (352)
                       .+....      ..++|++|++++|. +..++. .           .+++|+.|+++++. ++.+...  .+..+++|+
T Consensus        91 -~l~~l~------~~~~L~~L~l~~n~-l~~~~~-~-----------~~~~L~~L~l~~N~-l~~~~~~--~~~~l~~L~  147 (317)
T 3o53_A           91 -YVQELL------VGPSIETLHAANNN-ISRVSC-S-----------RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQ  147 (317)
T ss_dssp             -EEEEEE------ECTTCCEEECCSSC-CSEEEE-C-----------CCSSCEEEECCSSC-CCSGGGB--CTGGGSSEE
T ss_pred             -cccccc------CCCCcCEEECCCCc-cCCcCc-c-----------ccCCCCEEECCCCC-CCCccch--hhhccCCCC
Confidence             344322      34778888888764 333321 1           46778888887654 3332221  345577888


Q ss_pred             eEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccccccccccc
Q 044585          187 NLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNK  265 (352)
Q Consensus       187 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  265 (352)
                      .|+++++ .++...+..+...+++|+.|+ +.+.++.+...          ..+++|++|++++ +.++.++.. +   .
T Consensus       148 ~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~l~~L~~L~Ls~-N~l~~l~~~-~---~  211 (317)
T 3o53_A          148 YLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSS-NKLAFMGPE-F---Q  211 (317)
T ss_dssp             EEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCS-SCCCEECGG-G---G
T ss_pred             EEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc----------cccccCCEEECCC-CcCCcchhh-h---c
Confidence            8888887 555554555555678888888 66666655221          3468899999998 467777655 3   5


Q ss_pred             ccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecccccc
Q 044585          266 AFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRIE  332 (352)
Q Consensus       266 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~  332 (352)
                      .+++|+.|+++++ .++.+|..+..+++|++|++++++-..+..+ .....+++|+.+++.+++.++
T Consensus       212 ~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          212 SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH-HHHhccccceEEECCCchhcc
Confidence            7889999999887 6778888788889999999987765423222 244566777777777655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=6.1e-19  Score=170.88  Aligned_cols=290  Identities=15%  Similarity=0.096  Sum_probs=145.1

Q ss_pred             ecCCccEEeccccccce-----EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCC
Q 044585            5 EFPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFP   79 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~   79 (352)
                      .+++|++|++.++ .++     .++..+..+++|++|++++|.              +..++..+..+++|++|+++.+.
T Consensus       190 ~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--------------~~~l~~~~~~~~~L~~L~l~~~~  254 (592)
T 3ogk_B          190 HNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFE--------------ILELVGFFKAAANLEEFCGGSLN  254 (592)
T ss_dssp             HCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCB--------------GGGGHHHHHHCTTCCEEEECBCC
T ss_pred             cCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCcc--------------HHHHHHHHhhhhHHHhhcccccc
Confidence            4789999999887 333     333334568999999999542              33344444556666666665422


Q ss_pred             Ccce---eccCC-----------------CCCC--CCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce
Q 044585           80 RLRE---IWHGQ-----------------AVPV--SFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE  137 (352)
Q Consensus        80 ~l~~---~~~~~-----------------~l~~--~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~  137 (352)
                      ....   .+...                 .++.  ..+++|++|++++|. +........+..+++|++|+++.+..-..
T Consensus       255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~  333 (592)
T 3ogk_B          255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRG  333 (592)
T ss_dssp             CCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred             cccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence            1100   00000                 0000  134455555555543 32222212234455555555542111000


Q ss_pred             eeeeccccccccccCCCCcccCeecccc----------ccccccccccCCceeeccCcceEeeccCCCCcccccchhhhc
Q 044585          138 VLHLEELNAKEEHIGPRFPRLNRLRLID----------LPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHV  207 (352)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  207 (352)
                      +..         ... .+++|++|++.+          |..+....... ....+++|++|.+ +|..+++..+..+...
T Consensus       334 l~~---------~~~-~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~  401 (592)
T 3ogk_B          334 LEV---------LAQ-YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA-LAQGCQELEYMAV-YVSDITNESLESIGTY  401 (592)
T ss_dssp             HHH---------HHH-HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH-HHHHCTTCSEEEE-EESCCCHHHHHHHHHH
T ss_pred             HHH---------HHH-hCCCCCEEEeecCccccccccccCccCHHHHHH-HHhhCccCeEEEe-ecCCccHHHHHHHHhh
Confidence            000         001 355566666653          43333210000 1223566777766 4445555444444444


Q ss_pred             cCCCCCCC-C----CCccchhhhhcccCCCCCcccccCCcceeecccccc-cccccccccccccccCCcceEEEecCCCc
Q 044585          208 TTNNKEPQ-K----LTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHK-VQHLWKENDESNKAFANLKSLEIFECSKL  281 (352)
Q Consensus       208 ~~~L~~L~-~----~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~L~~L~l~~c~~l  281 (352)
                      +++|++|+ .    |+.++..+...+...   .+..+++|+.|+++.|.. ++......+  ...+++|+.|++++|. +
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~---~~~~~~~L~~L~L~~~~~~l~~~~~~~~--~~~~~~L~~L~L~~n~-l  475 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRS---LLIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVG-E  475 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHH---HHHHCTTCCEEEEECCGGGCCHHHHHHH--HHSCTTCCEEEECSCC-S
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHH---HHHhCCCCCEEEEecCCCCccHHHHHHH--HHhCccceEeeccCCC-C
Confidence            66666666 2    445543211100000   023467777777765543 222211111  1346778888888774 4


Q ss_pred             cc--ccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          282 QK--LVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       282 ~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      +.  ++..+..+++|++|++++|+ +++.........+++|++|++++|.
T Consensus       476 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          476 SDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             SHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            32  33334567888888888887 5544333344567888888888886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.68  E-value=4.4e-18  Score=152.06  Aligned_cols=271  Identities=11%  Similarity=0.060  Sum_probs=187.1

Q ss_pred             cCCccEEeccccccceEec-cCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            6 FPSLEQVSMTHCPNMKTFS-RGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      +++|++|++.+| .++.++ ..+..+++|++|++++|.              +...+. +..+++|++|+++++. ++.+
T Consensus        33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~--------------l~~~~~-~~~l~~L~~L~Ls~n~-l~~l   95 (317)
T 3o53_A           33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV--------------LYETLD-LESLSTLRTLDLNNNY-VQEL   95 (317)
T ss_dssp             GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSC--------------CEEEEE-ETTCTTCCEEECCSSE-EEEE
T ss_pred             CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCc--------------CCcchh-hhhcCCCCEEECcCCc-cccc
Confidence            579999999998 676665 467889999999999542              222332 6688999999999987 7653


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      +        ..++|++|++++| .+....+.    .+++|++|++++|.. ..++..        .+. .+++|+.|+++
T Consensus        96 ~--------~~~~L~~L~l~~n-~l~~~~~~----~~~~L~~L~l~~N~l-~~~~~~--------~~~-~l~~L~~L~Ls  152 (317)
T 3o53_A           96 L--------VGPSIETLHAANN-NISRVSCS----RGQGKKNIYLANNKI-TMLRDL--------DEG-CRSRVQYLDLK  152 (317)
T ss_dssp             E--------ECTTCCEEECCSS-CCSEEEEC----CCSSCEEEECCSSCC-CSGGGB--------CTG-GGSSEEEEECT
T ss_pred             c--------CCCCcCEEECCCC-ccCCcCcc----ccCCCCEEECCCCCC-CCccch--------hhh-ccCCCCEEECC
Confidence            3        2478999999998 56554432    478899999998753 322111        111 57899999998


Q ss_pred             cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcc
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLK  243 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~  243 (352)
                      ++. +..+.... ....+++|+.|+++++ .++.+ +...  .+++|+.|+ +.+.++.++..         +..+++|+
T Consensus       153 ~N~-l~~~~~~~-~~~~l~~L~~L~L~~N-~l~~~-~~~~--~l~~L~~L~Ls~N~l~~l~~~---------~~~l~~L~  217 (317)
T 3o53_A          153 LNE-IDTVNFAE-LAASSDTLEHLNLQYN-FIYDV-KGQV--VFAKLKTLDLSSNKLAFMGPE---------FQSAAGVT  217 (317)
T ss_dssp             TSC-CCEEEGGG-GGGGTTTCCEEECTTS-CCCEE-ECCC--CCTTCCEEECCSSCCCEECGG---------GGGGTTCS
T ss_pred             CCC-CCcccHHH-HhhccCcCCEEECCCC-cCccc-cccc--ccccCCEEECCCCcCCcchhh---------hcccCccc
Confidence            864 43332211 1235789999999988 46654 3222  478899998 77777765443         35678999


Q ss_pred             eeecccccccccccccccccccccCCcceEEEecCCCc-ccccCCccCCCCCcEEeecCCccccccccccccCccccccE
Q 044585          244 ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKL-QKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQS  322 (352)
Q Consensus       244 ~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  322 (352)
                      .|+++++ .++.++.. +   ..+++|+.|++++++.. ..++..+..+++|+.+++.+++.++...+...  ..+.+..
T Consensus       218 ~L~L~~N-~l~~l~~~-~---~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~--~~~~~~~  290 (317)
T 3o53_A          218 WISLRNN-KLVLIEKA-L---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC--TVPTLGH  290 (317)
T ss_dssp             EEECTTS-CCCEECTT-C---CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC--SSTTCEE
T ss_pred             EEECcCC-cccchhhH-h---hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc--CCCceec
Confidence            9999994 77777754 3   57899999999998644 35666677889999999988887776533211  1223333


Q ss_pred             EEEecccccceeccCC
Q 044585          323 MTIADCKRIEEIIQSP  338 (352)
Q Consensus       323 L~i~~c~~l~~~~~~~  338 (352)
                      .....|..+..-++..
T Consensus       291 ~~~~cc~~l~~~~~~~  306 (317)
T 3o53_A          291 YGAYCCEDLPAPFADR  306 (317)
T ss_dssp             ETTEEEBCCTTTHHHH
T ss_pred             ccceeeccCChhHHHH
Confidence            3345577776655533

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=8.3e-16  Score=136.49  Aligned_cols=238  Identities=14%  Similarity=0.118  Sum_probs=166.1

Q ss_pred             hhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccC--CchhhhcCCCCcEEEEccC
Q 044585           55 STIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAI--PTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        55 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~  132 (352)
                      ..+..+|..+  .++|++|+++++. ++.++... +  ..+++|++|++++| .+....  +. .+..+++|++|++++|
T Consensus        17 ~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~~-~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           17 KGLTSVPTGI--PSSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSN-GLSFKGCCSQ-SDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             SCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCEEEEEEH-HHHSCSCCCEEECCSC
T ss_pred             CCcccCCCCC--CCCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCC-ccCcccCccc-ccccccccCEEECCCC
Confidence            3455666543  3789999999987 77665543 2  35899999999998 454332  22 2456899999999997


Q ss_pred             CCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCC
Q 044585          133 DLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNK  212 (352)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~  212 (352)
                      . +..++...         . .+++|++|+++++. +..+.... .+..+++|+.|+++++ .+....+.. +..+++|+
T Consensus        89 ~-i~~l~~~~---------~-~l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~  153 (306)
T 2z66_A           89 G-VITMSSNF---------L-GLEQLEHLDFQHSN-LKQMSEFS-VFLSLRNLIYLDISHT-HTRVAFNGI-FNGLSSLE  153 (306)
T ss_dssp             S-EEEEEEEE---------E-TCTTCCEEECTTSE-EESSTTTT-TTTTCTTCCEEECTTS-CCEECSTTT-TTTCTTCC
T ss_pred             c-cccChhhc---------C-CCCCCCEEECCCCc-ccccccch-hhhhccCCCEEECCCC-cCCccchhh-cccCcCCC
Confidence            5 44443311         1 68999999998864 44333211 4667899999999998 455543433 34789999


Q ss_pred             CCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccC
Q 044585          213 EPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWH  290 (352)
Q Consensus       213 ~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~  290 (352)
                      .|+ ..+.++......       .+..+++|++|+++++ .++.++...+   ..+++|+.|+++++ .++.++. .+..
T Consensus       154 ~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~  221 (306)
T 2z66_A          154 VLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQC-QLEQLSPTAF---NSLSSLQVLNMSHN-NFFSLDTFPYKC  221 (306)
T ss_dssp             EEECTTCEEGGGEECS-------CCTTCTTCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTS-CCSBCCSGGGTT
T ss_pred             EEECCCCccccccchh-------HHhhCcCCCEEECCCC-CcCCcCHHHh---cCCCCCCEEECCCC-ccCccChhhccC
Confidence            998 666665421111       1466889999999995 6777765555   68899999999998 4566554 5678


Q ss_pred             CCCCcEEeecCCccccccccccccCcc-ccccEEEEeccc
Q 044585          291 LENLEALKVSKCHRLINLLTLSTSRSL-IILQSMTIADCK  329 (352)
Q Consensus       291 ~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~  329 (352)
                      +++|++|+++++ .++...+. .+..+ ++|+.|++++++
T Consensus       222 l~~L~~L~L~~N-~l~~~~~~-~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          222 LNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCCEEECTTS-CCCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred             cccCCEeECCCC-CCcccCHH-HHHhhhccCCEEEccCCC
Confidence            999999999888 45554333 34445 489999999865

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=5.4e-17  Score=142.73  Aligned_cols=222  Identities=19%  Similarity=0.221  Sum_probs=114.2

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceeccCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      ++++..+. +++.+|..+  .++|++|+++++              .+..++ ..+..+++|++|+++++. ++.+....
T Consensus        14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n--------------~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~   75 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGN--------------RISHVPAASFRACRNLTILWLHSNV-LARIDAAA   75 (285)
T ss_dssp             CEEECCSS-CCSSCCTTC--CTTCSEEECTTS--------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred             eEEEcCcC-CcccCCcCC--CCCceEEEeeCC--------------cCCccCHHHcccCCCCCEEECCCCc-cceeCHhh
Confidence            34555443 555665543  457777777733              222222 223456677777777665 55442222


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK  168 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  168 (352)
                       +  ..+++|++|++++|..+....+. .+..+++|++|++++|.. ..++.        ..+. .+++|+.|+++++. 
T Consensus        76 -~--~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~--------~~~~-~l~~L~~L~l~~n~-  140 (285)
T 1ozn_A           76 -F--TGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGL-QELGP--------GLFR-GLAALQYLYLQDNA-  140 (285)
T ss_dssp             -T--TTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSCC-CCCCT--------TTTT-TCTTCCEEECCSSC-
T ss_pred             -c--CCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECCCCcC-CEECH--------hHhh-CCcCCCEEECCCCc-
Confidence             1  24666777777766434444332 245666777777766542 21110        0111 45566666665542 


Q ss_pred             cccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecc
Q 044585          169 LKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLS  248 (352)
Q Consensus       169 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  248 (352)
                      ++.+...  .+..+++|+.|+++++ .++.+ +...                               +..+++|++|+++
T Consensus       141 l~~~~~~--~~~~l~~L~~L~l~~n-~l~~~-~~~~-------------------------------~~~l~~L~~L~l~  185 (285)
T 1ozn_A          141 LQALPDD--TFRDLGNLTHLFLHGN-RISSV-PERA-------------------------------FRGLHSLDRLLLH  185 (285)
T ss_dssp             CCCCCTT--TTTTCTTCCEEECCSS-CCCEE-CTTT-------------------------------TTTCTTCCEEECC
T ss_pred             ccccCHh--HhccCCCccEEECCCC-ccccc-CHHH-------------------------------hcCccccCEEECC
Confidence            2222110  2334555666666554 33332 2111                               2345667777777


Q ss_pred             cccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcc
Q 044585          249 RLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHR  304 (352)
Q Consensus       249 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~  304 (352)
                      ++ .++.+....+   ..+++|+.|+++++ .++.++. .+..+++|++|++++++-
T Consensus       186 ~n-~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          186 QN-RVAHVHPHAF---RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             SS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CC-cccccCHhHc---cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence            63 4455544444   45667777777766 4444442 355667777777766644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=7.1e-16  Score=135.52  Aligned_cols=88  Identities=18%  Similarity=0.146  Sum_probs=69.9

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcccccccccccc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTS  314 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  314 (352)
                      ++.+++|++|++++ +.++.++...+   ..+++|+.|+++++. ++.+ +..+..+++|++|+++++ .++.+++ ..+
T Consensus       149 ~~~l~~L~~L~l~~-n~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~  221 (285)
T 1ozn_A          149 FRDLGNLTHLFLHG-NRISSVPERAF---RGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPT-EAL  221 (285)
T ss_dssp             TTTCTTCCEEECCS-SCCCEECTTTT---TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCH-HHH
T ss_pred             hccCCCccEEECCC-CcccccCHHHh---cCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCH-HHc
Confidence            35578999999999 47777777656   678999999999985 5554 667888999999999877 5666643 346


Q ss_pred             CccccccEEEEecccc
Q 044585          315 RSLIILQSMTIADCKR  330 (352)
Q Consensus       315 ~~l~~L~~L~i~~c~~  330 (352)
                      ..+++|+.|++++++-
T Consensus       222 ~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          222 APLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTCTTCCEEECCSSCE
T ss_pred             ccCcccCEEeccCCCc
Confidence            7789999999998753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=2.6e-15  Score=146.27  Aligned_cols=120  Identities=16%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             CccEEeccccccceEecc-CCCCCCCceEEEecccccCccee---ecCc-------cchhhhhhce-eeeccCccceeEe
Q 044585            8 SLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHW---EGNK-------LNSTIQKCYE-VMIGFRDIEHLQL   75 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~---~~~~-------~~~~~~~l~~-~~~~~~~L~~L~l   75 (352)
                      ++++|+|++| .++.++. .|..+++|++|++++|.+...+-   ....       .+..+..+|. .+.++++|++|++
T Consensus        53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4555666555 4555543 34555556666655554433221   0000       0123444553 3456778888888


Q ss_pred             ccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           76 SHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        76 ~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      +++. ++.++... +  +.+++|++|+++++ .+........+..+++|++|++++|.
T Consensus       132 s~N~-l~~l~~~~-~--~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          132 VETN-LASLENFP-I--GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TTSC-CCCSTTCC-C--TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCc-CCCCChhh-h--hcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence            8776 65544332 2  35778888888887 44443222335677888888887653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=2.9e-17  Score=159.08  Aligned_cols=289  Identities=12%  Similarity=0.033  Sum_probs=178.9

Q ss_pred             ecCCccEEeccccccceEe-----ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCC
Q 044585            5 EFPSLEQVSMTHCPNMKTF-----SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFP   79 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~   79 (352)
                      .+++|++|++.+| .++..     +.....+++|++|+++++.+..         .....++..+..+++|++|++++|.
T Consensus       162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~---------~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK---------ISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSS---------CCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCc---------cCHHHHHHHHhhCCCCcEEeccCcc
Confidence            5899999999999 44332     2223468999999999542221         1123455555678999999999976


Q ss_pred             CcceeccCCCCCCCCCCCccEEEEecCCCC------------------------cccCCchhhhcCCCCcEEEEccCCCc
Q 044585           80 RLREIWHGQAVPVSFFNNLRQLAVDDCTNM------------------------SSAIPTNLLRCLNNLRCLEVRNCDLI  135 (352)
Q Consensus        80 ~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l------------------------~~~~~~~~~~~l~~L~~L~l~~~~~l  135 (352)
                       +..++...    ..+++|++|.+.++...                        ........+..+++|++|++++|. +
T Consensus       232 -~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l  305 (592)
T 3ogk_B          232 -ILELVGFF----KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-L  305 (592)
T ss_dssp             -GGGGHHHH----HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-C
T ss_pred             -HHHHHHHH----hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-C
Confidence             44332111    23455555555432111                        000111234567788888888776 3


Q ss_pred             ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeecc----------CCCCcccccchhh
Q 044585          136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIEN----------CPDMETFISNSVV  205 (352)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~~~~~~~~  205 (352)
                      ... ..      ...+. .+++|+.|++.++..-..+..   ....+++|++|++.+          |..+++.....+.
T Consensus       306 ~~~-~~------~~~~~-~~~~L~~L~L~~~~~~~~l~~---~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~  374 (592)
T 3ogk_B          306 ETE-DH------CTLIQ-KCPNLEVLETRNVIGDRGLEV---LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA  374 (592)
T ss_dssp             CHH-HH------HHHHT-TCTTCCEEEEEGGGHHHHHHH---HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred             CHH-HH------HHHHH-hCcCCCEEeccCccCHHHHHH---HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence            221 00      01112 688888888874321111111   234578999999995          7777765444555


Q ss_pred             hccCCCCCCC-CCCccchhhhhcccCCCCCccc-ccCCcceeeccc---cccccccccc-cc-ccccccCCcceEEEecC
Q 044585          206 HVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKL-TFPQLKELKLSR---LHKVQHLWKE-ND-ESNKAFANLKSLEIFEC  278 (352)
Q Consensus       206 ~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~---~~~l~~l~~~-~~-~~~~~~~~L~~L~l~~c  278 (352)
                      ..+++|++|+ .|+.++......        ++ .+++|+.|++++   |+.++..+.. .+ .....+++|+.|++++|
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~--------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~  446 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLES--------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR  446 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHH--------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred             hhCccCeEEEeecCCccHHHHHH--------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence            6789999999 888877644332        23 378999999984   5566654321 00 00146899999999887


Q ss_pred             CC-ccc--ccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          279 SK-LQK--LVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       279 ~~-l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      .+ ++.  +......+++|++|++++|. +++.........+++|++|++++|+
T Consensus       447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          447 QGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             GGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             CCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence            64 332  11112358999999998775 5554333456778999999999997

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=1.5e-17  Score=161.03  Aligned_cols=62  Identities=15%  Similarity=0.207  Sum_probs=43.9

Q ss_pred             cCCcceEEEecCCCcccc-cCC-ccCCCCCcEEeecCCccccccccccccCccccccEEEEecccc
Q 044585          267 FANLKSLEIFECSKLQKL-VPA-SWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKR  330 (352)
Q Consensus       267 ~~~L~~L~l~~c~~l~~l-~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~  330 (352)
                      +++|+.|++++|. ++.. +.. ...+++|++|++++|+. ++.........+++|+.|++++|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            6778888888774 3321 111 24589999999999976 5544444556789999999999964

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.65  E-value=3.7e-17  Score=145.71  Aligned_cols=81  Identities=19%  Similarity=0.106  Sum_probs=49.0

Q ss_pred             ccCCcceeeccccccccccc-ccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585          238 TFPQLKELKLSRLHKVQHLW-KENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRS  316 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  316 (352)
                      .+++|++|+++++ .++... ....   ..+++|+.|+++++ .++.+|..+.  ++|++|+++++ +++.++.   +..
T Consensus       226 ~l~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~  294 (312)
T 1wwl_A          226 ARVQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDE  294 (312)
T ss_dssp             TTCCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTT
T ss_pred             cCCCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh---Hhh
Confidence            3467777777773 444433 2222   34577777777776 4566665544  67777777655 5555532   456


Q ss_pred             cccccEEEEeccc
Q 044585          317 LIILQSMTIADCK  329 (352)
Q Consensus       317 l~~L~~L~i~~c~  329 (352)
                      +++|+.|++++.+
T Consensus       295 l~~L~~L~L~~N~  307 (312)
T 1wwl_A          295 LPQVGNLSLKGNP  307 (312)
T ss_dssp             SCEEEEEECTTCT
T ss_pred             CCCCCEEeccCCC
Confidence            6777777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=4e-18  Score=165.18  Aligned_cols=133  Identities=12%  Similarity=0.055  Sum_probs=80.2

Q ss_pred             eccCcceEeec-----cCCCCcccc----cchhhhccCCCCCCC-CCCccchhhhhcccCCCCCccc-ccCCcceeeccc
Q 044585          181 ELSELENLTIE-----NCPDMETFI----SNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKL-TFPQLKELKLSR  249 (352)
Q Consensus       181 ~~~~L~~L~l~-----~c~~l~~~~----~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~  249 (352)
                      .+++|+.|++.     +|..++...    ...+...+++|+.|+ .. .++......        ++ .+++|+.|++++
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~--------l~~~~~~L~~L~L~~  465 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY--------IGTYAKKMEMLSVAF  465 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH--------HHHHCTTCCEEEEES
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH--------HHHhchhccEeeccC
Confidence            46788888887     566666321    112344677777777 33 444332221        22 268899999988


Q ss_pred             ccccccccccccccccccCCcceEEEecCCCccc--ccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585          250 LHKVQHLWKENDESNKAFANLKSLEIFECSKLQK--LVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD  327 (352)
Q Consensus       250 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  327 (352)
                      |. +++.....+  ...+++|+.|++++|.. +.  +......+++|++|++++|+. +......+...++.|+...+..
T Consensus       466 ~~-i~~~~~~~l--~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~  540 (594)
T 2p1m_B          466 AG-DSDLGMHHV--LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE  540 (594)
T ss_dssp             CC-SSHHHHHHH--HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred             CC-CcHHHHHHH--HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence            64 433221111  13589999999999975 32  222345689999999999976 4333333345567776555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.65  E-value=8.9e-17  Score=144.61  Aligned_cols=213  Identities=18%  Similarity=0.197  Sum_probs=106.2

Q ss_pred             eeccCccceeEeccCCCcce--eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcce--ee
Q 044585           64 MIGFRDIEHLQLSHFPRLRE--IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEE--VL  139 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~  139 (352)
                      ...+++|++|++++|. +..  .+...    ..+++|++|++++| .+....+. .+..+++|++|++++|..++.  ++
T Consensus        89 ~~~~~~L~~L~L~~~~-l~~~~~~~~~----~~~~~L~~L~L~~~-~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~  161 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSV-IEVSTLHGIL----SQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQ  161 (336)
T ss_dssp             CCCCBCCCEEECTTCE-ECHHHHHHHH----TTBCCCSEEECTTC-BCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred             hccCCCCCEEEccCCC-cCHHHHHHHH----hhCCCCCEEeCcCc-ccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHH
Confidence            3455666666666654 332  11111    24566666666666 34332222 244566666666666643332  11


Q ss_pred             eeccccccccccCCCCcccCeeccccccccccccccCCceeecc-CcceEeeccCC-CCcccccchhhhccCCCCCCC--
Q 044585          140 HLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELS-ELENLTIENCP-DMETFISNSVVHVTTNNKEPQ--  215 (352)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~-~l~~~~~~~~~~~~~~L~~L~--  215 (352)
                      ..         +. .+++|++|+++++..++...... .+..++ +|++|++++|. .+++.........+++|+.|+  
T Consensus       162 ~~---------~~-~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          162 TL---------LS-SCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             HH---------HH-HCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             HH---------Hh-cCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence            10         11 45666666666664444311000 234556 66666666664 333111112233566666666  


Q ss_pred             CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCC-CCC
Q 044585          216 KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHL-ENL  294 (352)
Q Consensus       216 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-~~L  294 (352)
                      .|..++.....        .++.+++|++|++++|..+.......+   ..+++|+.|++++|  +..-  .+..+ ..|
T Consensus       231 ~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~--i~~~--~~~~l~~~l  295 (336)
T 2ast_B          231 DSVMLKNDCFQ--------EFFQLNYLQHLSLSRCYDIIPETLLEL---GEIPTLKTLQVFGI--VPDG--TLQLLKEAL  295 (336)
T ss_dssp             TCTTCCGGGGG--------GGGGCTTCCEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTS--SCTT--CHHHHHHHS
T ss_pred             CCCcCCHHHHH--------HHhCCCCCCEeeCCCCCCCCHHHHHHH---hcCCCCCEEeccCc--cCHH--HHHHHHhhC
Confidence            33323322221        134567888888888764433322233   56788888888877  2211  12222 235


Q ss_pred             cEEeecCCcccccccc
Q 044585          295 EALKVSKCHRLINLLT  310 (352)
Q Consensus       295 ~~L~l~~c~~l~~~~~  310 (352)
                      +.|++ +|++++...+
T Consensus       296 ~~L~l-~~n~l~~~~~  310 (336)
T 2ast_B          296 PHLQI-NCSHFTTIAR  310 (336)
T ss_dssp             TTSEE-SCCCSCCTTC
T ss_pred             cceEE-ecccCccccC
Confidence            56667 5556666533

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.65  E-value=4.7e-15  Score=138.79  Aligned_cols=79  Identities=22%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             CCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccccc-ccccCcc-
Q 044585          240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLT-LSTSRSL-  317 (352)
Q Consensus       240 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l-  317 (352)
                      ++|++|++++ +.++.++       ..+++|+.|++++| .++.+|.   .+++|++|+++++. ++.++. ......+ 
T Consensus       317 ~~L~~L~Ls~-N~l~~lp-------~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~  383 (454)
T 1jl5_A          317 PSLEELNVSN-NKLIELP-------ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLR  383 (454)
T ss_dssp             TTCCEEECCS-SCCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred             CcCCEEECCC-Ccccccc-------ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhh
Confidence            3677777776 3455443       23577888888776 5666665   46788888886663 333211 0112223 


Q ss_pred             ------------ccccEEEEeccccc
Q 044585          318 ------------IILQSMTIADCKRI  331 (352)
Q Consensus       318 ------------~~L~~L~i~~c~~l  331 (352)
                                  ++|+.|++++++..
T Consensus       384 ~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          384 MNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             CCC-----------------------
T ss_pred             hcccccccccccCcCCEEECCCCcCC
Confidence                        67788888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=1.3e-15  Score=143.83  Aligned_cols=237  Identities=15%  Similarity=0.125  Sum_probs=152.3

Q ss_pred             CCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCC
Q 044585           29 STPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCT  107 (352)
Q Consensus        29 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~  107 (352)
                      .+++|++|+++++              .+..+ |..+..+++|++|++++|. ++.... .    +.+++|++|++++| 
T Consensus        32 ~~~~L~~L~Ls~n--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l----~~l~~L~~L~Ls~N-   90 (487)
T 3oja_A           32 SAWNVKELDLSGN--------------PLSQISAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN-   90 (487)
T ss_dssp             TGGGCCEEECCSS--------------CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-C----TTCTTCCEEECCSS-
T ss_pred             cCCCccEEEeeCC--------------cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-c----ccCCCCCEEEecCC-
Confidence            3447777777743              22222 2345567777777777776 543322 2    35777888888776 


Q ss_pred             CCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcce
Q 044585          108 NMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELEN  187 (352)
Q Consensus       108 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  187 (352)
                      .+...+      ..++|+.|++++|.. ..++. .           .+++|+.|+++++. +..+...  .+..+++|+.
T Consensus        91 ~l~~l~------~~~~L~~L~L~~N~l-~~~~~-~-----------~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~  148 (487)
T 3oja_A           91 YVQELL------VGPSIETLHAANNNI-SRVSC-S-----------RGQGKKNIYLANNK-ITMLRDL--DEGCRSRVQY  148 (487)
T ss_dssp             EEEEEE------ECTTCCEEECCSSCC-CCEEE-C-----------CCSSCEEEECCSSC-CCSGGGB--CGGGGSSEEE
T ss_pred             cCCCCC------CCCCcCEEECcCCcC-CCCCc-c-----------ccCCCCEEECCCCC-CCCCCch--hhcCCCCCCE
Confidence            444432      236788888877643 22211 1           46778888877654 3332211  3456788888


Q ss_pred             EeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccc
Q 044585          188 LTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKA  266 (352)
Q Consensus       188 L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~  266 (352)
                      |+++++ .++...|..+...+++|+.|+ +.+.++.+..          ...+++|+.|++++ +.++.++.. +   ..
T Consensus       149 L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----------~~~l~~L~~L~Ls~-N~l~~~~~~-~---~~  212 (487)
T 3oja_A          149 LDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----------QVVFAKLKTLDLSS-NKLAFMGPE-F---QS  212 (487)
T ss_dssp             EECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----------CCCCTTCCEEECCS-SCCCEECGG-G---GG
T ss_pred             EECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccc----------cccCCCCCEEECCC-CCCCCCCHh-H---cC
Confidence            888877 555554666655678888888 6666665522          23478999999998 467777655 3   57


Q ss_pred             cCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEe
Q 044585          267 FANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIA  326 (352)
Q Consensus       267 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~  326 (352)
                      +++|+.|+++++ .++.+|..+..+++|+.|++++++-.....+ .....++.|+.+.+.
T Consensus       213 l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~-~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHH-HHHTTCHHHHHHHHH
T ss_pred             CCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchH-HHHHhCCCCcEEecc
Confidence            899999999987 5778888888889999999988765422212 234556666666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=1.1e-16  Score=144.00  Aligned_cols=237  Identities=14%  Similarity=0.134  Sum_probs=156.9

Q ss_pred             CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585           68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK  147 (352)
Q Consensus        68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  147 (352)
                      ++++.|+++++. +...+...    ..+++|++|++++|. +........+..+++|++|++++|......+.       
T Consensus        70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-------  136 (336)
T 2ast_B           70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-------  136 (336)
T ss_dssp             TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-------
T ss_pred             ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-------
Confidence            789999999876 55544433    468999999999984 54431223467899999999999853222111       


Q ss_pred             ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccC-CCCCCC-CCC--ccchh
Q 044585          148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTT-NNKEPQ-KLT--SEENF  223 (352)
Q Consensus       148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~L~~L~-~~~--~l~~~  223 (352)
                        .+. .+++|++|+++++..+++..... .+..+++|++|++++|..+++.........++ +|++|+ ..+  .++..
T Consensus       137 --~l~-~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~  212 (336)
T 2ast_B          137 --TLA-KNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS  212 (336)
T ss_dssp             --HHT-TCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred             --HHh-cCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence              112 68999999999997666421111 35678999999999997777532233445788 999999 443  44422


Q ss_pred             hhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCC
Q 044585          224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKC  302 (352)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c  302 (352)
                      .....       +..+++|++|++++|..++......+   ..+++|+.|++++|..+... ...+..+++|++|++++|
T Consensus       213 ~l~~~-------~~~~~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          213 DLSTL-------VRRCPNLVHLDLSDSVMLKNDCFQEF---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHH-------HHHCTTCSEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHH-------HhhCCCCCEEeCCCCCcCCHHHHHHH---hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            11111       35689999999999876665444444   57899999999999744321 124578999999999999


Q ss_pred             ccccccccccccCccccccEEEEecccccceeccC
Q 044585          303 HRLINLLTLSTSRSLIILQSMTIADCKRIEEIIQS  337 (352)
Q Consensus       303 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  337 (352)
                        +++.....+..   +++.|++. |..++.+...
T Consensus       283 --i~~~~~~~l~~---~l~~L~l~-~n~l~~~~~~  311 (336)
T 2ast_B          283 --VPDGTLQLLKE---ALPHLQIN-CSHFTTIARP  311 (336)
T ss_dssp             --SCTTCHHHHHH---HSTTSEES-CCCSCCTTCS
T ss_pred             --cCHHHHHHHHh---hCcceEEe-cccCccccCC
Confidence              44322222222   35555664 5556555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=7.9e-16  Score=145.40  Aligned_cols=218  Identities=18%  Similarity=0.201  Sum_probs=163.6

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN  145 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  145 (352)
                      .+++|++|+++++. ++.++... +  +.+++|++|++++| .+...++   +..+++|++|++++|. +..++      
T Consensus        32 ~~~~L~~L~Ls~n~-l~~~~~~~-~--~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~------   96 (487)
T 3oja_A           32 SAWNVKELDLSGNP-LSQISAAD-L--APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELL------   96 (487)
T ss_dssp             TGGGCCEEECCSSC-CCCCCGGG-G--TTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSE-EEEEE------
T ss_pred             cCCCccEEEeeCCc-CCCCCHHH-H--hCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCc-CCCCC------
Confidence            45699999999987 76654322 2  46899999999998 5665554   5589999999999974 44432      


Q ss_pred             ccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhh
Q 044585          146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFL  224 (352)
Q Consensus       146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~  224 (352)
                              ..++|+.|+++++. +..+.     ...+++|+.|.++++ .++.+.|..+ ..+++|+.|+ +.+.++...
T Consensus        97 --------~~~~L~~L~L~~N~-l~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A           97 --------VGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             --------ECTTCCEEECCSSC-CCCEE-----ECCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTSCCCEEE
T ss_pred             --------CCCCcCEEECcCCc-CCCCC-----ccccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCCCCCCcC
Confidence                    45899999998864 44332     234689999999988 5666545444 3789999999 777777654


Q ss_pred             hhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585          225 LAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       225 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~  304 (352)
                      +..-       ...+++|+.|+++++ .++.++..     ..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .
T Consensus       161 ~~~l-------~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~  225 (487)
T 3oja_A          161 FAEL-------AASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-K  225 (487)
T ss_dssp             GGGG-------GGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-C
T ss_pred             hHHH-------hhhCCcccEEecCCC-cccccccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-c
Confidence            4321       125789999999995 56666433     46899999999998 67888888889999999999876 5


Q ss_pred             ccccccccccCccccccEEEEeccccc
Q 044585          305 LINLLTLSTSRSLIILQSMTIADCKRI  331 (352)
Q Consensus       305 l~~~~~~~~~~~l~~L~~L~i~~c~~l  331 (352)
                      ++.+|.  .+..+++|+.|++++++-.
T Consensus       226 l~~lp~--~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          226 LVLIEK--ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred             Ccccch--hhccCCCCCEEEcCCCCCc
Confidence            666654  3567889999999987644

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.63  E-value=1.3e-15  Score=142.58  Aligned_cols=250  Identities=14%  Similarity=0.051  Sum_probs=117.7

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCcc-------------
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDI-------------   70 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L-------------   70 (352)
                      ++.++|++|.+.++ .++.+|..++.+++|++|++++|             .-.+.+|..++.+.+|             
T Consensus         8 ~~~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n-------------~~~~~~p~~~~~l~~L~~l~l~~c~~~~l   73 (454)
T 1jl5_A            8 VSNTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWS-------------EWERNAPPGNGEQREMAVSRLRDCLDRQA   73 (454)
T ss_dssp             ---------------------------CCHHHHHHHHH-------------HHHHTSCTTSCCCHHHHHHHHHHHHHHTC
T ss_pred             cccccchhhhcccC-chhhCChhHhcccchhhhhccCC-------------cccccCCcccccchhcchhhhhhhhccCC
Confidence            34678999999998 67999999999999999999953             2233445444444433             


Q ss_pred             ceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchh---------------h-hcCCCCcEEEEccCCC
Q 044585           71 EHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNL---------------L-RCLNNLRCLEVRNCDL  134 (352)
Q Consensus        71 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~---------------~-~~l~~L~~L~l~~~~~  134 (352)
                      ++|+++++. ++.++.       ..++|++|+++++ .+...+ ...               + ...++|++|++++|. 
T Consensus        74 ~~L~l~~~~-l~~lp~-------~~~~L~~L~l~~n-~l~~lp-~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~-  142 (454)
T 1jl5_A           74 HELELNNLG-LSSLPE-------LPPHLESLVASCN-SLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ-  142 (454)
T ss_dssp             SEEECTTSC-CSCCCS-------CCTTCSEEECCSS-CCSSCC-CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC-
T ss_pred             CEEEecCCc-cccCCC-------CcCCCCEEEccCC-cCCccc-cccCCCcEEECCCCccCcccCCCCCCCEEECcCCC-
Confidence            556666554 443221       1234555555544 233321 100               0 001345555555442 


Q ss_pred             cceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCC
Q 044585          135 IEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEP  214 (352)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  214 (352)
                      ++.++.+          + .+++|++|+++++. ++.++.      ..++|+.|+++++ .++.+ | . ...+++|+.|
T Consensus       143 l~~lp~~----------~-~l~~L~~L~l~~N~-l~~lp~------~~~~L~~L~L~~n-~l~~l-~-~-~~~l~~L~~L  200 (454)
T 1jl5_A          143 LEKLPEL----------Q-NSSFLKIIDVDNNS-LKKLPD------LPPSLEFIAAGNN-QLEEL-P-E-LQNLPFLTAI  200 (454)
T ss_dssp             CSSCCCC----------T-TCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSSC-C-C-CTTCTTCCEE
T ss_pred             CCCCccc----------C-CCCCCCEEECCCCc-CcccCC------CcccccEEECcCC-cCCcC-c-c-ccCCCCCCEE
Confidence            2222211          1 56666666666542 333221      1246777777666 44443 3 2 2356666666


Q ss_pred             C-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCC
Q 044585          215 Q-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLEN  293 (352)
Q Consensus       215 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~  293 (352)
                      + ..+.++.++.            ..++|++|+++++ .++.++.  +   ..+++|+.|+++++ .++.+|.   .+++
T Consensus       201 ~l~~N~l~~l~~------------~~~~L~~L~l~~n-~l~~lp~--~---~~l~~L~~L~l~~N-~l~~l~~---~~~~  258 (454)
T 1jl5_A          201 YADNNSLKKLPD------------LPLSLESIVAGNN-ILEELPE--L---QNLPFLTTIYADNN-LLKTLPD---LPPS  258 (454)
T ss_dssp             ECCSSCCSSCCC------------CCTTCCEEECCSS-CCSSCCC--C---TTCTTCCEEECCSS-CCSSCCS---CCTT
T ss_pred             ECCCCcCCcCCC------------CcCcccEEECcCC-cCCcccc--c---CCCCCCCEEECCCC-cCCcccc---cccc
Confidence            6 4444443211            1247888888874 5555652  3   57788888888876 4566653   2477


Q ss_pred             CcEEeecCCccccccccccccCccccccEEEEecc
Q 044585          294 LEALKVSKCHRLINLLTLSTSRSLIILQSMTIADC  328 (352)
Q Consensus       294 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  328 (352)
                      |++|++++| .++.++.     ..++|+.|++++|
T Consensus       259 L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N  287 (454)
T 1jl5_A          259 LEALNVRDN-YLTDLPE-----LPQSLTFLDVSEN  287 (454)
T ss_dssp             CCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred             cCEEECCCC-cccccCc-----ccCcCCEEECcCC
Confidence            888888666 3444432     2356777777776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=7.9e-15  Score=129.15  Aligned_cols=199  Identities=13%  Similarity=0.048  Sum_probs=127.6

Q ss_pred             eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccc
Q 044585           65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL  144 (352)
Q Consensus        65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  144 (352)
                      .+++++++++++++. ++.++.+      ..++++.|+++++ .+....+ ..+..+++|++|+++++. ++.++...  
T Consensus         7 ~~l~~l~~l~~~~~~-l~~ip~~------~~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~--   74 (290)
T 1p9a_G            7 SKVASHLEVNCDKRN-LTALPPD------LPKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDG--   74 (290)
T ss_dssp             ECSTTCCEEECTTSC-CSSCCSC------CCTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCS--
T ss_pred             cccCCccEEECCCCC-CCcCCCC------CCCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCCc-cCcccCCC--
Confidence            456667777776654 5553332      2456777777776 3444433 235567777777777754 44433221  


Q ss_pred             cccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchh
Q 044585          145 NAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENF  223 (352)
Q Consensus       145 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~  223 (352)
                               .+++|+.|+++++. ++.++.   .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ ..+.++.+
T Consensus        75 ---------~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           75 ---------TLPVLGTLDLSHNQ-LQSLPL---LGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNELKTL  139 (290)
T ss_dssp             ---------CCTTCCEEECCSSC-CSSCCC---CTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             ---------CCCcCCEEECCCCc-CCcCch---hhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCCCCcc
Confidence                     57777777777653 443332   3455677788877776 45554 333334677777777 66666654


Q ss_pred             hhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585          224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      +...        +..+++|+.|++++ +.++.++...+   ..+++|+.|+++++ .++.+|..+...++|+++++.+++
T Consensus       140 ~~~~--------~~~l~~L~~L~L~~-N~l~~l~~~~~---~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          140 PPGL--------LTPTPKLEKLSLAN-NNLTELPAGLL---NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CTTT--------TTTCTTCCEEECTT-SCCSCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             Chhh--------cccccCCCEEECCC-CcCCccCHHHh---cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence            4332        34567888999888 57777777665   56888899998887 577888877778888888887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=8e-15  Score=132.70  Aligned_cols=239  Identities=17%  Similarity=0.154  Sum_probs=118.9

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      ++++..+. +++.+|..+  .+++++|++++              ..+..+|. .+.++++|++|+++++...+.++.+.
T Consensus        12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~--------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X           12 RVFLCQES-KVTEIPSDL--PRNAIELRFVL--------------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             TEEEEEST-TCCSCCTTC--CTTCSEEEEES--------------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred             CEEEecCC-CCCccCcCc--CCCCCEEEccC--------------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence            34444443 567777655  46777777773              33445553 34567777777777776334333332


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK  168 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  168 (352)
                       +  ..+++|+++.+.++.++....+. .+..+++|++|+++++. +..++....        . ...++..+++.++..
T Consensus        75 -f--~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~L~~L~l~~n~-l~~~~~~~~--------~-~~~~l~~l~l~~~~~  140 (350)
T 4ay9_X           75 -F--SNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTG-IKHLPDVHK--------I-HSLQKVLLDIQDNIN  140 (350)
T ss_dssp             -B--CSCTTCCEEEEEEETTCCEECTT-SBCCCTTCCEEEEEEEC-CSSCCCCTT--------C-CBSSCEEEEEESCTT
T ss_pred             -h--hcchhhhhhhcccCCcccccCch-hhhhccccccccccccc-cccCCchhh--------c-ccchhhhhhhccccc
Confidence             2  13556665544444356555443 35667777777777653 322221110        0 233444555555444


Q ss_pred             cccccccCCceeec-cCcceEeeccCCCCcccccchhhhccCCCCCCC--CCCccchhhhhcccCCCCCcccccCCccee
Q 044585          169 LKRFCNFTGNIIEL-SELENLTIENCPDMETFISNSVVHVTTNNKEPQ--KLTSEENFLLAHQVQPLFDEKLTFPQLKEL  245 (352)
Q Consensus       169 l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~--~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L  245 (352)
                      +..+....  +..+ ..++.|.++++ .++.+ +...+ ...+|+++.  .++.++.++...        ++.+++|++|
T Consensus       141 i~~l~~~~--f~~~~~~l~~L~L~~N-~i~~i-~~~~f-~~~~L~~l~l~~~n~l~~i~~~~--------f~~l~~L~~L  207 (350)
T 4ay9_X          141 IHTIERNS--FVGLSFESVILWLNKN-GIQEI-HNSAF-NGTQLDELNLSDNNNLEELPNDV--------FHGASGPVIL  207 (350)
T ss_dssp             CCEECTTS--STTSBSSCEEEECCSS-CCCEE-CTTSS-TTEEEEEEECTTCTTCCCCCTTT--------TTTEECCSEE
T ss_pred             cccccccc--hhhcchhhhhhccccc-cccCC-Chhhc-cccchhHHhhccCCcccCCCHHH--------hccCcccchh
Confidence            44433221  1222 34666666554 44444 33322 234444444  344444443321        2344556666


Q ss_pred             ecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeec
Q 044585          246 KLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVS  300 (352)
Q Consensus       246 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~  300 (352)
                      ++++ +.++.++..      .+.+|+.|.+.++..++.+|. +..+++|+.+++.
T Consensus       208 dLs~-N~l~~lp~~------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          208 DISR-TRIHSLPSY------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             ECTT-SCCCCCCSS------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             hcCC-CCcCccChh------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            6655 355555533      334555555555555555552 3555556655553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=1e-14  Score=124.68  Aligned_cols=201  Identities=17%  Similarity=0.130  Sum_probs=101.4

Q ss_pred             ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccc
Q 044585           69 DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKE  148 (352)
Q Consensus        69 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  148 (352)
                      +|++|+++++. ++.++... +  ..+++|++|++++|..+....+. .+..+++|++|++++|+.++.++..       
T Consensus        32 ~l~~L~l~~n~-l~~i~~~~-~--~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~-------   99 (239)
T 2xwt_C           32 STQTLKLIETH-LRTIPSHA-F--SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPD-------   99 (239)
T ss_dssp             TCCEEEEESCC-CSEECTTT-T--TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTT-------
T ss_pred             cccEEEEeCCc-ceEECHHH-c--cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHH-------
Confidence            55566665554 54444322 2  23556666666665324443322 2445566666666654444443210       


Q ss_pred             cccCCCCcccCeeccccccccccccccCCceeeccCcc---eEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhh
Q 044585          149 EHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELE---NLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLL  225 (352)
Q Consensus       149 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~  225 (352)
                       .+. .+++|+.|+++++. ++.++.    +..+++|+   .|++++++.++.+ +...                     
T Consensus       100 -~f~-~l~~L~~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i-~~~~---------------------  150 (239)
T 2xwt_C          100 -ALK-ELPLLKFLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSI-PVNA---------------------  150 (239)
T ss_dssp             -SEE-CCTTCCEEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEE-CTTT---------------------
T ss_pred             -HhC-CCCCCCEEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhc-Cccc---------------------
Confidence             001 35555555555432 222221    22233343   6666655444443 2111                     


Q ss_pred             hcccCCCCCcccccCCcc-eeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCC-CCCcEEeecCC
Q 044585          226 AHQVQPLFDEKLTFPQLK-ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHL-ENLEALKVSKC  302 (352)
Q Consensus       226 ~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~-~~L~~L~l~~c  302 (352)
                                +..+++|+ +|++++ +.++.++...+    ..++|+.|++++++.++.++. .+..+ ++|++|+++++
T Consensus       151 ----------~~~l~~L~~~L~l~~-n~l~~i~~~~~----~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          151 ----------FQGLCNETLTLKLYN-NGFTSVQGYAF----NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             ----------TTTTBSSEEEEECCS-CCCCEECTTTT----TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             ----------ccchhcceeEEEcCC-CCCcccCHhhc----CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence                      23456677 777766 35556665544    226777777777654666643 34556 77777777654


Q ss_pred             ccccccccccccCccccccEEEEecccc
Q 044585          303 HRLINLLTLSTSRSLIILQSMTIADCKR  330 (352)
Q Consensus       303 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~  330 (352)
                       .++.++..    .+++|+.|.+.++..
T Consensus       216 -~l~~l~~~----~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          216 -SVTALPSK----GLEHLKELIARNTWT  238 (239)
T ss_dssp             -CCCCCCCT----TCTTCSEEECTTC--
T ss_pred             -ccccCChh----HhccCceeeccCccC
Confidence             45555432    355677777766643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.61  E-value=1.3e-14  Score=140.33  Aligned_cols=227  Identities=18%  Similarity=0.147  Sum_probs=149.8

Q ss_pred             CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      ++|++|++.+| .++.+|.   .+++|++|++++|.              +..+|.   .+++|++|+++++. ++.+  
T Consensus        61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~--------------l~~lp~---~l~~L~~L~Ls~N~-l~~l--  116 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ--------------LTSLPV---LPPGLLELSIFSNP-LTHL--  116 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC--------------CSCCCC---CCTTCCEEEECSCC-CCCC--
T ss_pred             CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc--------------CCcCCC---CCCCCCEEECcCCc-CCCC--
Confidence            68999999998 6777776   47899999999543              334444   45677777777665 5442  


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeee----cccc----ccccccCCCCccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHL----EELN----AKEEHIGPRFPRL  158 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~----~~~~~~~~~~~~L  158 (352)
                          +. .+++|++|++++| .+...+.     .+++|++|++++|. +..++..    ..+.    ....... .+++|
T Consensus       117 ----~~-~l~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~-~~~~L  183 (622)
T 3g06_A          117 ----PA-LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPM-LPSGL  183 (622)
T ss_dssp             ----CC-CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CCTTC
T ss_pred             ----CC-CCCCcCEEECCCC-CCCcCCC-----CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcc-cCCCC
Confidence                22 3456666666665 3444322     23566666666653 2222110    0000    0000001 45788


Q ss_pred             CeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCccc
Q 044585          159 NRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKL  237 (352)
Q Consensus       159 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~  237 (352)
                      +.|+++++. ++.++.      .+++|+.|.+.++ .++.+ |.    .+++|+.|+ +.+.++.++            .
T Consensus       184 ~~L~Ls~N~-l~~l~~------~~~~L~~L~L~~N-~l~~l-~~----~~~~L~~L~Ls~N~L~~lp------------~  238 (622)
T 3g06_A          184 QELSVSDNQ-LASLPT------LPSELYKLWAYNN-RLTSL-PA----LPSGLKELIVSGNRLTSLP------------V  238 (622)
T ss_dssp             CEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSSC-CC----CCTTCCEEECCSSCCSCCC------------C
T ss_pred             cEEECCCCC-CCCCCC------ccchhhEEECcCC-ccccc-CC----CCCCCCEEEccCCccCcCC------------C
Confidence            888888754 444322      3579999999987 56554 32    347899998 767776543            2


Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcc
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~  304 (352)
                      .+++|+.|+++++ .++.++.       .+++|+.|++++| .++.+|..+..+++|+.|++++++-
T Consensus       239 ~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          239 LPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            3589999999994 7777763       5689999999998 6788998889999999999988864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=1.2e-14  Score=124.18  Aligned_cols=186  Identities=10%  Similarity=0.106  Sum_probs=134.1

Q ss_pred             CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccc
Q 044585           95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCN  174 (352)
Q Consensus        95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  174 (352)
                      .++|++|+++++ .+...++ ..+..+++|+.|++++|..++.++...        +. .+++|++|++.++..++.+..
T Consensus        30 ~~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~--------f~-~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           30 PPSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHS--------FY-NLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CTTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTT--------EE-SCTTCCEEEEEEETTCCEECT
T ss_pred             CCcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHhH--------cC-CCcCCcEEECCCCCCeeEcCH
Confidence            458999999998 5666554 336789999999999987566653210        11 678888888887666666543


Q ss_pred             cCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcc---eeeccccc
Q 044585          175 FTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLK---ELKLSRLH  251 (352)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~  251 (352)
                      .  .+..+++|+.|+++++ .++.+ |.                                 ++.+++|+   +|+++++.
T Consensus        99 ~--~f~~l~~L~~L~l~~n-~l~~l-p~---------------------------------~~~l~~L~~L~~L~l~~N~  141 (239)
T 2xwt_C           99 D--ALKELPLLKFLGIFNT-GLKMF-PD---------------------------------LTKVYSTDIFFILEITDNP  141 (239)
T ss_dssp             T--SEECCTTCCEEEEEEE-CCCSC-CC---------------------------------CTTCCBCCSEEEEEEESCT
T ss_pred             H--HhCCCCCCCEEeCCCC-CCccc-cc---------------------------------cccccccccccEEECCCCc
Confidence            2  4667788888888877 34332 21                                 12234454   99999965


Q ss_pred             ccccccccccccccccCCcc-eEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcc-ccccEEEEeccc
Q 044585          252 KVQHLWKENDESNKAFANLK-SLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSL-IILQSMTIADCK  329 (352)
Q Consensus       252 ~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~  329 (352)
                      .++.++...+   ..+++|+ .|+++++ .++.++......++|++|++++++.++.++. ..+..+ ++|+.|++++++
T Consensus       142 ~l~~i~~~~~---~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          142 YMTSIPVNAF---QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             TCCEECTTTT---TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC
T ss_pred             chhhcCcccc---cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc
Confidence            8888887766   6889999 9999987 5678876544558999999999877888754 356677 899999999863


Q ss_pred             cccee
Q 044585          330 RIEEI  334 (352)
Q Consensus       330 ~l~~~  334 (352)
                       ++.+
T Consensus       217 -l~~l  220 (239)
T 2xwt_C          217 -VTAL  220 (239)
T ss_dssp             -CCCC
T ss_pred             -cccC
Confidence             4443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=1.8e-14  Score=130.32  Aligned_cols=234  Identities=18%  Similarity=0.203  Sum_probs=115.4

Q ss_pred             hhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585           56 TIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI  135 (352)
Q Consensus        56 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  135 (352)
                      .+.++|..+  .+++++|+|+++. ++.++.+. +  ..+++|++|++++|..... .+...+..+++|+++...+++.+
T Consensus        20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             TCCSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTC
T ss_pred             CCCccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcc
Confidence            344444433  2456666666655 55554433 2  2356666666666532222 22233445556655554444445


Q ss_pred             ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC
Q 044585          136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ  215 (352)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  215 (352)
                      ..++..        .+. .+++|+.|++.++. ++.+...  ......++..|.+.++..+..+.+..+......++.|+
T Consensus        93 ~~l~~~--------~f~-~l~~L~~L~l~~n~-l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~  160 (350)
T 4ay9_X           93 LYINPE--------AFQ-NLPNLQYLLISNTG-IKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  160 (350)
T ss_dssp             CEECTT--------SBC-CCTTCCEEEEEEEC-CSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccCch--------hhh-hccccccccccccc-cccCCch--hhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence            444211        011 45566666665542 2222211  12233455556665555555542222221223455555


Q ss_pred             -CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCC
Q 044585          216 -KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENL  294 (352)
Q Consensus       216 -~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L  294 (352)
                       ..+.++.+....         ...++|+++++.+++.++.++...+   ..+++|+.|+++++ .++.+|..  .+.+|
T Consensus       161 L~~N~i~~i~~~~---------f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~--~~~~L  225 (350)
T 4ay9_X          161 LNKNGIQEIHNSA---------FNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY--GLENL  225 (350)
T ss_dssp             CCSSCCCEECTTS---------STTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSS--SCTTC
T ss_pred             cccccccCCChhh---------ccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChh--hhccc
Confidence             555555443331         1234566666666566666665555   45666666666665 45555532  35566


Q ss_pred             cEEeecCCccccccccccccCccccccEEEEe
Q 044585          295 EALKVSKCHRLINLLTLSTSRSLIILQSMTIA  326 (352)
Q Consensus       295 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~  326 (352)
                      ++|.+.++.+++.+|.   ...+++|+.+++.
T Consensus       226 ~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~  254 (350)
T 4ay9_X          226 KKLRARSTYNLKKLPT---LEKLVALMEASLT  254 (350)
T ss_dssp             CEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred             hHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence            6666666666666543   3445556666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.56  E-value=7.9e-16  Score=137.09  Aligned_cols=249  Identities=16%  Similarity=0.128  Sum_probs=163.6

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeee-------ccCccceeEecc
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMI-------GFRDIEHLQLSH   77 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~L~~L~l~~   77 (352)
                      ..++|++|++.++ .+ .+|..+...  |++|+++++.+..            ..+|....       .+++|++|++++
T Consensus        41 ~~~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~------------~~~~~~~~~~~~~~~~l~~L~~L~L~~  104 (312)
T 1wwl_A           41 GGRSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRA------------ARIPSRILFGALRVLGISGLQELTLEN  104 (312)
T ss_dssp             EEEECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEE------------EECBHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             cCCCceeEeeccc-cc-ccHHHHHHH--HhhcccccccccC------------CCcCHHHHHHHHHhcCcCCccEEEccC
Confidence            3566777777777 44 566555333  8888888532211            12333222       688999999998


Q ss_pred             CCCcc-eeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcC-----CCCcEEEEccCCCcceeeeecccccccccc
Q 044585           78 FPRLR-EIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCL-----NNLRCLEVRNCDLIEEVLHLEELNAKEEHI  151 (352)
Q Consensus        78 ~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  151 (352)
                      +. ++ ..+... + .+.+++|++|+++++ .+... |. .+..+     ++|++|++++|.. ..++.        ..+
T Consensus       105 n~-l~~~~~~~~-~-~~~l~~L~~L~Ls~N-~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l-~~~~~--------~~~  169 (312)
T 1wwl_A          105 LE-VTGTAPPPL-L-EATGPDLNILNLRNV-SWATR-DA-WLAELQQWLKPGLKVLSIAQAHS-LNFSC--------EQV  169 (312)
T ss_dssp             EB-CBSCCCCCS-S-SCCSCCCSEEEEESC-BCSSS-SS-HHHHHHTTCCTTCCEEEEESCSC-CCCCT--------TTC
T ss_pred             Cc-ccchhHHHH-H-HhcCCCccEEEccCC-CCcch-hH-HHHHHHHhhcCCCcEEEeeCCCC-ccchH--------HHh
Confidence            87 55 333321 1 136889999999998 56665 42 24455     8999999998763 33221        111


Q ss_pred             CCCCcccCeeccccccccccc--cccCCceeeccCcceEeeccCCCCccc--ccchhhhccCCCCCCC-CCCccchhhhh
Q 044585          152 GPRFPRLNRLRLIDLPKLKRF--CNFTGNIIELSELENLTIENCPDMETF--ISNSVVHVTTNNKEPQ-KLTSEENFLLA  226 (352)
Q Consensus       152 ~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~-~~~~l~~~~~~  226 (352)
                      + .+++|+.|+++++.-...+  +... ....+++|++|+++++ .++.+  .+..++..+++|+.|+ +.+.++.....
T Consensus       170 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          170 R-VFPALSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             C-CCSSCCEEECCSCTTCHHHHHHHHS-CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred             c-cCCCCCEEECCCCCcCcchHHHHHH-HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence            2 6889999999987633321  1110 1256789999999998 45532  1344555778999998 77777664421


Q ss_pred             cccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585          227 HQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       227 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      .       .+..+++|++|++++ +.++.++..      ..++|+.|+++++ .++.+|. +..+++|++|++++++
T Consensus       247 ~-------~~~~l~~L~~L~Ls~-N~l~~ip~~------~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          247 P-------SCDWPSQLNSLNLSF-TGLKQVPKG------LPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             S-------CCCCCTTCCEEECTT-SCCSSCCSS------CCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             h-------hhhhcCCCCEEECCC-CccChhhhh------ccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence            1       124468999999999 467777643      2289999999987 6777765 7889999999997764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.54  E-value=2.3e-14  Score=127.32  Aligned_cols=144  Identities=18%  Similarity=0.299  Sum_probs=73.1

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      +++|++|++.+| .++.++ .+..+++|++|++++|              .+..++. +..+++|++|+++++. ++.++
T Consensus        40 l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n--------------~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~  101 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN--------------QITDLAP-LKNLTKITELELSGNP-LKNVS  101 (308)
T ss_dssp             HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCCCGG-GTTCCSCCEEECCSCC-CSCCG
T ss_pred             cCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC--------------cCCCChh-HccCCCCCEEEccCCc-CCCch
Confidence            566677777666 555554 3555666666666633              2222232 4456666666666655 44432


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID  165 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  165 (352)
                      . .    ..+++|++|++++| .+....+   +..+++|++|++++|. +..++.+.           .+++|+.|++++
T Consensus       102 ~-~----~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~l~~  160 (308)
T 1h6u_A          102 A-I----AGLQSIKTLDLTST-QITDVTP---LAGLSNLQVLYLDLNQ-ITNISPLA-----------GLTNLQYLSIGN  160 (308)
T ss_dssp             G-G----TTCTTCCEEECTTS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGG-----------GCTTCCEEECCS
T ss_pred             h-h----cCCCCCCEEECCCC-CCCCchh---hcCCCCCCEEECCCCc-cCcCcccc-----------CCCCccEEEccC
Confidence            1 1    24566666666665 3444322   4456666666666643 22221111           455555555555


Q ss_pred             ccccccccccCCceeeccCcceEeeccC
Q 044585          166 LPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                      +. ++.+.    .+..+++|+.|+++++
T Consensus       161 n~-l~~~~----~l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          161 AQ-VSDLT----PLANLSKLTTLKADDN  183 (308)
T ss_dssp             SC-CCCCG----GGTTCTTCCEEECCSS
T ss_pred             Cc-CCCCh----hhcCCCCCCEEECCCC
Confidence            42 22221    1334455555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.53  E-value=1.2e-13  Score=120.19  Aligned_cols=62  Identities=23%  Similarity=0.293  Sum_probs=43.2

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH  303 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  303 (352)
                      +.+++|++|++++ +.++.++...+   ..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus       154 ~~l~~L~~L~L~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          154 DKLTSLKELRLYN-NQLKRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCTTCCEEECCS-SCCSCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCcccceeEecC-CcCcEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            4467788888877 36666665555   56778888888877 5566654 35667888888887664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=1.3e-13  Score=120.35  Aligned_cols=211  Identities=16%  Similarity=0.201  Sum_probs=100.6

Q ss_pred             cceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCCCCCCCCCCC
Q 044585           19 NMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNN   97 (352)
Q Consensus        19 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~   97 (352)
                      ++..+|..+  .++|++|+++++              .+..++. .+..+++|++|+++++. ++.++... +  ..+++
T Consensus        18 ~l~~ip~~l--~~~l~~L~ls~n--------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~--~~l~~   77 (276)
T 2z62_A           18 NFYKIPDNL--PFSTKNLDLSFN--------------PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA-Y--QSLSH   77 (276)
T ss_dssp             CCSSCCSSS--CTTCCEEECTTC--------------CCCEECTTTTTTCTTCSEEECTTCC-CCEECTTT-T--TTCTT
T ss_pred             CccccCCCC--CCCccEEECCCC--------------cccccCHhHhccccCCcEEECCCCc-CCccCHHH-c--cCCcC
Confidence            344555544  345666776633              2222222 33456666666666664 54443322 2  23566


Q ss_pred             ccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCC
Q 044585           98 LRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG  177 (352)
Q Consensus        98 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  177 (352)
                      |++|++++| .+....+. .+..+++|++|++++|.. ..+...        .+. .+++|+.|+++++. ++.+.... 
T Consensus        78 L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~~--------~~~-~l~~L~~L~l~~n~-l~~~~l~~-  143 (276)
T 2z62_A           78 LSTLILTGN-PIQSLALG-AFSGLSSLQKLVAVETNL-ASLENF--------PIG-HLKTLKELNVAHNL-IQSFKLPE-  143 (276)
T ss_dssp             CCEEECTTC-CCCEECTT-TTTTCTTCCEEECTTSCC-CCSTTC--------CCT-TCTTCCEEECCSSC-CCCCCCCG-
T ss_pred             CCEEECCCC-ccCccChh-hhcCCccccEEECCCCCc-cccCch--------hcc-cCCCCCEEECcCCc-cceecCch-
Confidence            666666665 34443322 245566666666665432 111100        011 45555555555432 22110000 


Q ss_pred             ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcc----eeeccccccc
Q 044585          178 NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLK----ELKLSRLHKV  253 (352)
Q Consensus       178 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l  253 (352)
                      .+..+++|+.|+++++ .++.+.+..+                                ..+++|+    .|++++ +.+
T Consensus       144 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~--------------------------------~~l~~L~~l~l~L~ls~-n~l  189 (276)
T 2z62_A          144 YFSNLTNLEHLDLSSN-KIQSIYCTDL--------------------------------RVLHQMPLLNLSLDLSL-NPM  189 (276)
T ss_dssp             GGGGCTTCCEEECCSS-CCCEECGGGG--------------------------------HHHHTCTTCCEEEECCS-SCC
T ss_pred             hhccCCCCCEEECCCC-CCCcCCHHHh--------------------------------hhhhhccccceeeecCC-Ccc
Confidence            2334455555555554 2333211111                                1222333    566666 355


Q ss_pred             ccccccccccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCC
Q 044585          254 QHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKC  302 (352)
Q Consensus       254 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c  302 (352)
                      +.++...+    ...+|+.|+++++ .++.++.. +..+++|++|+++++
T Consensus       190 ~~~~~~~~----~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          190 NFIQPGAF----KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CEECTTSS----CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             cccCcccc----CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence            55554443    3346777777766 35555543 356677777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.52  E-value=1e-15  Score=143.57  Aligned_cols=125  Identities=18%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             ecCCccEEeccccccce-----EeccCCCCCCCceEEEecccccCccee----ecC------------ccc----hhhhh
Q 044585            5 EFPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTEREEGEHHW----EGN------------KLN----STIQK   59 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~------------~~~----~~~~~   59 (352)
                      .+++|++|++.+| .++     .++..+..+++|++|+++++.+.....    ...            ..+    .....
T Consensus        26 ~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           26 LLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            4677788888777 344     334445567777777777654322100    000            000    01123


Q ss_pred             hceeeeccCccceeEeccCCCcceeccCCCCCC---CCCCCccEEEEecCCCCcccCC---chhhhcCCCCcEEEEccCC
Q 044585           60 CYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPV---SFFNNLRQLAVDDCTNMSSAIP---TNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        60 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~---~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~  133 (352)
                      ++..+..+++|++|+++++. ++...... +..   ...++|++|++++| .+.....   ...+..+++|++|++++|.
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            44445556666666666655 43211110 000   12345777777766 3443221   1223456777777777655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=8.7e-14  Score=121.52  Aligned_cols=212  Identities=19%  Similarity=0.261  Sum_probs=126.0

Q ss_pred             hhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585           56 TIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI  135 (352)
Q Consensus        56 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  135 (352)
                      .+..+|..+.  ++|++|+++++. ++.++... +  ..+++|++|++++| .+....+ ..+..+++|++|++++|. +
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l   88 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYS-F--FSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-I   88 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCC-CCEECTTT-T--TTCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-C
T ss_pred             CccccCCCCC--CCccEEECCCCc-ccccCHhH-h--ccccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-c
Confidence            3444554332  467777777765 65544322 2  24677777777776 4554433 225567777777777754 2


Q ss_pred             ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC
Q 044585          136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ  215 (352)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  215 (352)
                      ..++.        ..+. .+++|+.|++.++. +..+...  .+..+++|+.|+++++                      
T Consensus        89 ~~~~~--------~~~~-~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n----------------------  134 (276)
T 2z62_A           89 QSLAL--------GAFS-GLSSLQKLVAVETN-LASLENF--PIGHLKTLKELNVAHN----------------------  134 (276)
T ss_dssp             CEECT--------TTTT-TCTTCCEEECTTSC-CCCSTTC--CCTTCTTCCEEECCSS----------------------
T ss_pred             CccCh--------hhhc-CCccccEEECCCCC-ccccCch--hcccCCCCCEEECcCC----------------------
Confidence            22211        0011 45666666665542 2221110  2344556666665554                      


Q ss_pred             CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcc----eEEEecCCCcccccCCccCC
Q 044585          216 KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLK----SLEIFECSKLQKLVPASWHL  291 (352)
Q Consensus       216 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~~~~~~~  291 (352)
                         .++.+....       .++.+++|++|+++++ .++.++...+   ..+++|+    .|+++++ .++.++......
T Consensus       135 ---~l~~~~l~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~  199 (276)
T 2z62_A          135 ---LIQSFKLPE-------YFSNLTNLEHLDLSSN-KIQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE  199 (276)
T ss_dssp             ---CCCCCCCCG-------GGGGCTTCCEEECCSS-CCCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCS
T ss_pred             ---ccceecCch-------hhccCCCCCEEECCCC-CCCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCC
Confidence               222211000       1355789999999994 6677665555   4555666    7888887 567777665666


Q ss_pred             CCCcEEeecCCccccccccccccCccccccEEEEec
Q 044585          292 ENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIAD  327 (352)
Q Consensus       292 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~  327 (352)
                      .+|++|+++++. ++.++. ..+..+++|+.|++++
T Consensus       200 ~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          200 IRLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CCEEEEECCSSC-CSCCCT-TTTTTCCSCCEEECCS
T ss_pred             CcccEEECCCCc-eeecCH-hHhcccccccEEEccC
Confidence            799999998774 777754 4567889999999995

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=1e-13  Score=123.18  Aligned_cols=103  Identities=16%  Similarity=0.250  Sum_probs=50.7

Q ss_pred             eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc
Q 044585           64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE  143 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  143 (352)
                      +..+++|++|+++++. ++.++. .    ..+++|++|++++| .+....   .+..+++|++|++++|. ++.++.+. 
T Consensus        59 ~~~l~~L~~L~L~~n~-i~~~~~-~----~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l~-  126 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQ-ITDLAP-L----KNLTKITELELSGN-PLKNVS---AIAGLQSIKTLDLTSTQ-ITDVTPLA-  126 (308)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGG-G----TTCCSCCEEECCSC-CCSCCG---GGTTCTTCCEEECTTSC-CCCCGGGT-
T ss_pred             hhccCCCCEEEccCCc-CCCChh-H----ccCCCCCEEEccCC-cCCCch---hhcCCCCCCEEECCCCC-CCCchhhc-
Confidence            3455666666666554 444332 1    34566666666665 243322   24456666666666643 22222111 


Q ss_pred             ccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585          144 LNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       144 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                                .+++|+.|+++++. +..+.    .+..+++|+.|++++|
T Consensus       127 ----------~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          127 ----------GLSNLQVLYLDLNQ-ITNIS----PLAGLTNLQYLSIGNA  161 (308)
T ss_dssp             ----------TCTTCCEEECCSSC-CCCCG----GGGGCTTCCEEECCSS
T ss_pred             ----------CCCCCCEEECCCCc-cCcCc----cccCCCCccEEEccCC
Confidence                      45566666665542 22221    1334556666666555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=2.1e-13  Score=118.69  Aligned_cols=199  Identities=16%  Similarity=0.165  Sum_probs=108.9

Q ss_pred             CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceecc
Q 044585            8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      +.+++++.++ .++.+|..+  .++|++|+++++              .+..++. .+..+++|++|+++++. ++.++.
T Consensus        17 ~~~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n--------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~   78 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSNI--PADTKKLDLQSN--------------KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPA   78 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSCC--CTTCSEEECCSS--------------CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCT
T ss_pred             CCCEEEccCC-CCCccCCCC--CCCCCEEECcCC--------------CCCeeCHHHhcCCCCCCEEECCCCc-cCeeCh
Confidence            4667777765 666666655  356777777743              2233332 34466777777777665 554443


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      .. +  ..+++|++|+++++ .+...++ ..+..+++|++|+++++. +..++.        ..+. .+++|+.|+++++
T Consensus        79 ~~-~--~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~--------~~~~-~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           79 GI-F--KELKNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRNQ-LKSLPP--------RVFD-SLTKLTYLSLGYN  143 (270)
T ss_dssp             TT-T--SSCTTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSSC-CCCCCT--------TTTT-TCTTCCEEECCSS
T ss_pred             hh-h--cCCCCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCCc-cCeeCH--------HHhC-cCcCCCEEECCCC
Confidence            32 1  23667777777776 3444332 334566777777777653 222211        0011 4556666666554


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceee
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELK  246 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~  246 (352)
                      . ++.++..  .+..+++|+.|+++++ .++.+                        ....        +..+++|++|+
T Consensus       144 ~-l~~~~~~--~~~~l~~L~~L~L~~n-~l~~~------------------------~~~~--------~~~l~~L~~L~  187 (270)
T 2o6q_A          144 E-LQSLPKG--VFDKLTSLKELRLYNN-QLKRV------------------------PEGA--------FDKLTELKTLK  187 (270)
T ss_dssp             C-CCCCCTT--TTTTCTTCCEEECCSS-CCSCC------------------------CTTT--------TTTCTTCCEEE
T ss_pred             c-CCccCHh--HccCCcccceeEecCC-cCcEe------------------------ChhH--------hccCCCcCEEE
Confidence            2 3322211  1334455555555554 23322                        2111        23457788888


Q ss_pred             cccccccccccccccccccccCCcceEEEecCC
Q 044585          247 LSRLHKVQHLWKENDESNKAFANLKSLEIFECS  279 (352)
Q Consensus       247 l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~  279 (352)
                      ++++ .++.++...+   ..+++|+.|++++++
T Consensus       188 L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          188 LDNN-QLKRVPEGAF---DSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSS-CCSCCCTTTT---TTCTTCCEEECCSSC
T ss_pred             CCCC-cCCcCCHHHh---ccccCCCEEEecCCC
Confidence            8874 6666666555   567788888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.49  E-value=2.1e-16  Score=148.30  Aligned_cols=114  Identities=13%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             cCCccEEeccccccceEec--cCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            6 FPSLEQVSMTHCPNMKTFS--RGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .++|++|++.++ .++..+  ..+..+++|++|++++|.+..         .....++..+..+++|++|+++++. +.+
T Consensus         2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~---------~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~   70 (461)
T 1z7x_W            2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTE---------ARCKDISSALRVNPALAELNLRSNE-LGD   70 (461)
T ss_dssp             CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCH---------HHHHHHHHHHHTCTTCCEEECTTCC-CHH
T ss_pred             Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCH---------HHHHHHHHHHHhCCCcCEEeCCCCc-CCh
Confidence            468999999888 555333  224579999999999764332         1222445555567888888888776 543


Q ss_pred             eccCCCCCCCCCC----CccEEEEecCCCCcccC---CchhhhcCCCCcEEEEccCC
Q 044585           84 IWHGQAVPVSFFN----NLRQLAVDDCTNMSSAI---PTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        84 ~~~~~~l~~~~l~----~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~~  133 (352)
                      ..... +. ..++    +|++|++++| .+....   ....+..+++|++|++++|.
T Consensus        71 ~~~~~-l~-~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W           71 VGVHC-VL-QGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHHHH-HH-HTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHH-HH-HHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence            21110 10 0122    6888888887 344321   11235677788888888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=2.7e-15  Score=137.63  Aligned_cols=277  Identities=11%  Similarity=0.061  Sum_probs=141.4

Q ss_pred             eEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCC--Ccce-eccCCC-CCC--CC
Q 044585           21 KTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFP--RLRE-IWHGQA-VPV--SF   94 (352)
Q Consensus        21 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~-l~~--~~   94 (352)
                      ..++..+..+++|++|++++|.+..         .....++..+..+++|++|++++|.  .+.. ++.+.. ++.  ..
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~---------~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~   92 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGT---------EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK   92 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECH---------HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCH---------HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence            3444444556777777777432211         1111233334456777777777653  1111 010000 000  24


Q ss_pred             CCCccEEEEecCCCCcccC---CchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCC---------cccCeec
Q 044585           95 FNNLRQLAVDDCTNMSSAI---PTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRF---------PRLNRLR  162 (352)
Q Consensus        95 l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~L~~L~  162 (352)
                      +++|++|++++| .+....   ....+..+++|++|++++|.. .....    ......+. .+         ++|++|+
T Consensus        93 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~----~~l~~~l~-~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           93 CPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAG----AKIARALQ-ELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             CTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHH----HHHHHHHH-HHHHHHHHHTCCCCCEEE
T ss_pred             CCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHH----HHHHHHHH-HHhhhhhcccCCCCcEEE
Confidence            577777777776 344311   011245677777777777653 21100    00000000 22         6777777


Q ss_pred             ccccccc-ccccccCCceeeccCcceEeeccCCCCcc-----cccchhhhccCCCCCCC-CCCccch-----hhhhcccC
Q 044585          163 LIDLPKL-KRFCNFTGNIIELSELENLTIENCPDMET-----FISNSVVHVTTNNKEPQ-KLTSEEN-----FLLAHQVQ  230 (352)
Q Consensus       163 l~~~~~l-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L~-~~~~l~~-----~~~~~~~~  230 (352)
                      ++++.-- ..+......+..+++|+.|.+++| .+++     +.+..+ ..+++|+.|+ +.+.++.     ++..    
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~----  239 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIA----  239 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHH----
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHH----
Confidence            7765421 111100002345678888888777 4442     112122 3667777777 5555532     2221    


Q ss_pred             CCCCcccccCCcceeecccccccccccccccccc-c--ccCCcceEEEecCCCccc-----ccCCc-cCCCCCcEEeecC
Q 044585          231 PLFDEKLTFPQLKELKLSRLHKVQHLWKENDESN-K--AFANLKSLEIFECSKLQK-----LVPAS-WHLENLEALKVSK  301 (352)
Q Consensus       231 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~--~~~~L~~L~l~~c~~l~~-----l~~~~-~~~~~L~~L~l~~  301 (352)
                           +..+++|++|++++|. ++......++.. .  .+++|+.|++++|. ++.     ++..+ ..+++|++|++++
T Consensus       240 -----l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          240 -----LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             -----GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             -----HccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccC
Confidence                 3567899999999863 444311111000 1  27899999999984 454     66555 4589999999988


Q ss_pred             Cccccccc--cccccCccccccEEEEec
Q 044585          302 CHRLINLL--TLSTSRSLIILQSMTIAD  327 (352)
Q Consensus       302 c~~l~~~~--~~~~~~~l~~L~~L~i~~  327 (352)
                      |+- +...  ...+...+++++.+.+..
T Consensus       313 N~l-~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          313 NRF-SEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             SBS-CTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             CcC-CcchhHHHHHHHHhhhcCcchhhh
Confidence            753 3332  123344455566555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.47  E-value=5.2e-13  Score=117.47  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=112.4

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      ..+++++++++.++ +++.+|..+  .+++++|+++++.+...             .+..+..+++|++|+++++. ++.
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~n~-l~~   69 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPPDL--PKDTTILHLSENLLYTF-------------SLATLMPYTRLTQLNLDRAE-LTK   69 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSCC--CTTCCEEECTTSCCSEE-------------EGGGGTTCTTCCEEECTTSC-CCE
T ss_pred             cccCCccEEECCCC-CCCcCCCCC--CCCCCEEEcCCCcCCcc-------------CHHHhhcCCCCCEEECCCCc-cCc
Confidence            35788999999887 788888766  47899999995432221             12345578899999999887 766


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecc
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRL  163 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  163 (352)
                      ++..     +.+++|++|+++++ .+...+ . .+..+++|++|++++|. ++.++.        ..+. .+++|+.|++
T Consensus        70 ~~~~-----~~l~~L~~L~Ls~N-~l~~l~-~-~~~~l~~L~~L~l~~N~-l~~l~~--------~~~~-~l~~L~~L~L  131 (290)
T 1p9a_G           70 LQVD-----GTLPVLGTLDLSHN-QLQSLP-L-LGQTLPALTVLDVSFNR-LTSLPL--------GALR-GLGELQELYL  131 (290)
T ss_dssp             EECC-----SCCTTCCEEECCSS-CCSSCC-C-CTTTCTTCCEEECCSSC-CCCCCS--------STTT-TCTTCCEEEC
T ss_pred             ccCC-----CCCCcCCEEECCCC-cCCcCc-h-hhccCCCCCEEECCCCc-CcccCH--------HHHc-CCCCCCEEEC
Confidence            5443     36788999999987 555443 2 25678889999998864 333321        0111 5677888887


Q ss_pred             ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc
Q 044585          164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE  221 (352)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~  221 (352)
                      +++. ++.++..  .+..+++|+.|+++++ .++.+ |...+..+++|+.|+ ..+.++
T Consensus       132 ~~N~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          132 KGNE-LKTLPPG--LLTPTPKLEKLSLANN-NLTEL-PAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             TTSC-CCCCCTT--TTTTCTTCCEEECTTS-CCSCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCC-CCccChh--hcccccCCCEEECCCC-cCCcc-CHHHhcCcCCCCEEECCCCcCC
Confidence            7653 4433221  2445677777777776 45544 433333445555554 444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.46  E-value=2.1e-12  Score=125.62  Aligned_cols=205  Identities=15%  Similarity=0.077  Sum_probs=116.5

Q ss_pred             CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccc
Q 044585           94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFC  173 (352)
Q Consensus        94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  173 (352)
                      .+++|+.|+++.+..............+.+|+.+++..+........          +. .+++|+.+++.++.......
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~----------~~-~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN----------FL-GLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC----------CT-TCTTCCEEECTTSEEESTTS
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc----------cc-ccccccchhhhhcccccccc
Confidence            45566666666542211111111233455666666655432211101          11 56677777776554333221


Q ss_pred             ccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCc-cchhhhhcccCCCCCcccccCCcceeeccccc
Q 044585          174 NFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTS-EENFLLAHQVQPLFDEKLTFPQLKELKLSRLH  251 (352)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~-l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  251 (352)
                      . . .+..+++++.++++.+ .+... +......+++|+.|+ ..+. ...+....        +..+++|++|+++++ 
T Consensus       438 ~-~-~~~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~--------~~~l~~L~~L~Ls~N-  504 (635)
T 4g8a_A          438 F-S-VFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDI--------FTELRNLTFLDLSQC-  504 (635)
T ss_dssp             S-C-TTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSC--------CTTCTTCCEEECTTS-
T ss_pred             c-c-cccccccccccccccc-ccccc-cccccccchhhhhhhhhhcccccccCchh--------hhhccccCEEECCCC-
Confidence            1 1 3445667777777665 34443 233334667777777 4333 22222211        356778888888884 


Q ss_pred             ccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccCcc-ccccEEEEecc
Q 044585          252 KVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSL-IILQSMTIADC  328 (352)
Q Consensus       252 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c  328 (352)
                      .++.++...+   ..+++|+.|+++++ +++.++. .+..+++|++|+++++ +++.+++. .+..+ ++|+.|+++++
T Consensus       505 ~L~~l~~~~f---~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          505 QLEQLSPTAF---NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             CCCEECTTTT---TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSS-CTTCCCTTCCEEECTTC
T ss_pred             ccCCcChHHH---cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHH-HHHhhhCcCCEEEeeCC
Confidence            6777766666   67888888888887 5666654 4677888888888665 55666443 33444 57888888763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=5.9e-13  Score=118.28  Aligned_cols=210  Identities=17%  Similarity=0.137  Sum_probs=107.6

Q ss_pred             CCccEEEEecCCCCcccCCchhh-hcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccc
Q 044585           96 NNLRQLAVDDCTNMSSAIPTNLL-RCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCN  174 (352)
Q Consensus        96 ~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  174 (352)
                      ++|++|++++| .+....+...+ ..+++|++|++++|......+....     ..+. .+++|++|+++++. +..+..
T Consensus        91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-----~~~~-~~~~L~~L~Ls~n~-l~~~~~  162 (310)
T 4glp_A           91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE-----LQQW-LKPGLKVLSIAQAH-SPAFSC  162 (310)
T ss_dssp             SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH-----HHTT-BCSCCCEEEEECCS-SCCCCT
T ss_pred             CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHH-----HHhh-hccCCCEEEeeCCC-cchhhH
Confidence            44666666665 34433333211 4556666666666542211100000     0001 35566666665543 222211


Q ss_pred             cCCceeeccCcceEeeccCCCCcc--cccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccc
Q 044585          175 FTGNIIELSELENLTIENCPDMET--FISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLH  251 (352)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  251 (352)
                      .  .+..+++|+.|+++++.-...  +.+......+++|++|+ +.+.++.+......     -++.+++|++|+++++ 
T Consensus       163 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-----l~~~l~~L~~L~Ls~N-  234 (310)
T 4glp_A          163 E--QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA-----LAAAGVQPHSLDLSHN-  234 (310)
T ss_dssp             T--SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH-----HHHHTCCCSSEECTTS-
T ss_pred             H--HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH-----HHhcCCCCCEEECCCC-
Confidence            1  344566677777766642221  11112223566677776 54555433221000     0134578888888874 


Q ss_pred             ccccc-cccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          252 KVQHL-WKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       252 ~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      .++.. +.... ....+++|++|+++++ .++.+|..+  .++|++|+++++ +++.++.   +..+++|+.|++++++
T Consensus       235 ~l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          235 SLRATVNPSAP-RCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCCCCSCCS-SCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTT
T ss_pred             CCCccchhhHH-hccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCC
Confidence            55554 32211 0012368888888877 566777654  378888888666 4555532   4567788888887764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.44  E-value=1.9e-13  Score=119.13  Aligned_cols=56  Identities=13%  Similarity=0.078  Sum_probs=35.2

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      +.+++|++|+++++ .++.++...+   ..+++|+.|++++++.       .+.+++|+.++++.+.
T Consensus       178 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~  233 (272)
T 3rfs_A          178 DKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINK  233 (272)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHH
T ss_pred             cCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHh
Confidence            44567777777773 5555655544   5677777777777632       1446667777775543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.43  E-value=3.7e-13  Score=119.65  Aligned_cols=209  Identities=16%  Similarity=0.153  Sum_probs=137.9

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCC---chhhhcCCCCcEEEEccCCCcceeeeec
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIP---TNLLRCLNNLRCLEVRNCDLIEEVLHLE  142 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~  142 (352)
                      .+++|++|+++++. +....... +....+++|++|++++| .+....+   ...+..+++|++|++++|.. ..++.  
T Consensus        89 ~~~~L~~L~l~~n~-l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~--  162 (310)
T 4glp_A           89 AYSRLKELTLEDLK-ITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSC--  162 (310)
T ss_dssp             HHSCCCEEEEESCC-CBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCT--
T ss_pred             ccCceeEEEeeCCE-eccchhhh-hhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhH--
Confidence            45679999999887 54332222 21135889999999998 4554332   11234689999999998764 32211  


Q ss_pred             cccccccccCCCCcccCeecccccccccc--ccccCCceeeccCcceEeeccCCCCcccc--cchhhhccCCCCCCC-CC
Q 044585          143 ELNAKEEHIGPRFPRLNRLRLIDLPKLKR--FCNFTGNIIELSELENLTIENCPDMETFI--SNSVVHVTTNNKEPQ-KL  217 (352)
Q Consensus       143 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~~~L~~L~-~~  217 (352)
                            ..++ .+++|++|+++++.-...  +.... ....+++|+.|.+++| .++.+.  +..+...+++|++|+ +.
T Consensus       163 ------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          163 ------EQVR-AFPALTSLDLSDNPGLGERGLMAAL-CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             ------TSCC-CCTTCCEEECCSCTTCHHHHHHTTS-CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             ------HHhc-cCCCCCEEECCCCCCccchhhhHHH-hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC
Confidence                  1112 688999999998753321  21111 2356789999999998 555431  122445779999999 77


Q ss_pred             CccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEE
Q 044585          218 TSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEAL  297 (352)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L  297 (352)
                      +.++...+..     +..+..+++|++|++++ +.++.++..      .+++|+.|+++++ .++.+|. +..+++|++|
T Consensus       234 N~l~~~~p~~-----~~~~~~~~~L~~L~Ls~-N~l~~lp~~------~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L  299 (310)
T 4glp_A          234 NSLRATVNPS-----APRCMWSSALNSLNLSF-AGLEQVPKG------LPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNL  299 (310)
T ss_dssp             SCCCCCCCSC-----CSSCCCCTTCCCEECCS-SCCCSCCSC------CCSCCSCEECCSC-CCCSCCC-TTSCCCCSCE
T ss_pred             CCCCccchhh-----HHhccCcCcCCEEECCC-CCCCchhhh------hcCCCCEEECCCC-cCCCCch-hhhCCCccEE
Confidence            7776653221     11122247999999998 577777644      3489999999998 5677654 5788999999


Q ss_pred             eecCCc
Q 044585          298 KVSKCH  303 (352)
Q Consensus       298 ~l~~c~  303 (352)
                      ++++++
T Consensus       300 ~L~~N~  305 (310)
T 4glp_A          300 TLDGNP  305 (310)
T ss_dssp             ECSSTT
T ss_pred             ECcCCC
Confidence            997764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.42  E-value=1.4e-12  Score=113.70  Aligned_cols=177  Identities=18%  Similarity=0.212  Sum_probs=103.9

Q ss_pred             CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccc
Q 044585           94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFC  173 (352)
Q Consensus        94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  173 (352)
                      .+++|++|.+.+| .+....   .+..+++|++|++++|. +..+..+.           .+++|++|+++++. ++.+.
T Consensus        39 ~l~~L~~L~l~~~-~i~~~~---~l~~l~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~L~~n~-l~~~~  101 (272)
T 3rfs_A           39 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVRYLALGGNK-LHDISALK-----------ELTNLTYLILTGNQ-LQSLP  101 (272)
T ss_dssp             HHTTCCEEECTTS-CCCCCT---TGGGCTTCCEEECTTSC-CCCCGGGT-----------TCTTCCEEECTTSC-CCCCC
T ss_pred             cccceeeeeeCCC-Cccccc---ccccCCCCcEEECCCCC-CCCchhhc-----------CCCCCCEEECCCCc-cCccC
Confidence            3555666666655 233322   13456666666666543 22221111           45666666665542 33322


Q ss_pred             ccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccc
Q 044585          174 NFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHK  252 (352)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  252 (352)
                      ..  .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ ..+.++.+....        ++.+++|++|+++++ .
T Consensus       102 ~~--~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~l~~n-~  168 (272)
T 3rfs_A          102 NG--VFDKLTNLKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGV--------FDKLTNLTELDLSYN-Q  168 (272)
T ss_dssp             TT--TTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-C
T ss_pred             hh--HhcCCcCCCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCCccCccCHHH--------hccCccCCEEECCCC-C
Confidence            11  2344566777777666 34443 333333566666666 444554433221        355789999999995 6


Q ss_pred             cccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcc
Q 044585          253 VQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHR  304 (352)
Q Consensus       253 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~  304 (352)
                      ++.++...+   ..+++|+.|++++| .++.++. .+..+++|++|++++++-
T Consensus       169 l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          169 LQSLPEGVF---DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCccCHHHh---cCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence            777776655   57899999999988 4566654 467899999999988753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.37  E-value=1.1e-13  Score=126.85  Aligned_cols=254  Identities=14%  Similarity=0.119  Sum_probs=158.8

Q ss_pred             chhhhhhceeeeccCccceeEeccCCCcceeccCCCCC--CCCCCCccEEEEecCC--CCcccCCchh------hhcCCC
Q 044585           54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVP--VSFFNNLRQLAVDDCT--NMSSAIPTNL------LRCLNN  123 (352)
Q Consensus        54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~~~l~~L~~L~l~~c~--~l~~~~~~~~------~~~l~~  123 (352)
                      ...+..++..+..+++|++|++++|. ++...... ++  -..+++|++|++++|.  .+....|.+.      +..+++
T Consensus        18 ~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~-l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           18 TEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARW-LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHH-HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHH-HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence            34566677777788999999999986 65421110 00  0358899999999972  3333333332      367899


Q ss_pred             CcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccccc--CCceeec---------cCcceEeecc
Q 044585          124 LRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF--TGNIIEL---------SELENLTIEN  192 (352)
Q Consensus       124 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~---------~~L~~L~l~~  192 (352)
                      |++|++++|..-..     +.......+. .+++|++|+++++.- ......  ...+..+         ++|+.|.+++
T Consensus        96 L~~L~Ls~n~l~~~-----~~~~l~~~l~-~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           96 LHTVRLSDNAFGPT-----AQEPLIDFLS-KHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             CCEEECCSCCCCTT-----THHHHHHHHH-HCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             ccEEECCCCcCCHH-----HHHHHHHHHH-hCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            99999999763221     0000111122 688999999998752 211000  0012233         8999999999


Q ss_pred             CCCCc-ccccc--hhhhccCCCCCCC-CCCccchhhhhcccCCCCC-cccccCCcceeeccccccc-----ccccccccc
Q 044585          193 CPDME-TFISN--SVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFD-EKLTFPQLKELKLSRLHKV-----QHLWKENDE  262 (352)
Q Consensus       193 c~~l~-~~~~~--~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l-----~~l~~~~~~  262 (352)
                      |. ++ ...+.  .....+++|+.|+ ..+.++......    ..+ .+..+++|+.|+++++. +     ..++. .+ 
T Consensus       169 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~----l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l-  240 (386)
T 2ca6_A          169 NR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH----LLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI-AL-  240 (386)
T ss_dssp             SC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH----HHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH-HG-
T ss_pred             CC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH----HHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH-HH-
Confidence            84 44 22221  2334778999998 655665321000    000 14668999999999964 4     33433 23 


Q ss_pred             cccccCCcceEEEecCCCccc-----ccCCc--cCCCCCcEEeecCCccccc-----cccccccCccccccEEEEeccc
Q 044585          263 SNKAFANLKSLEIFECSKLQK-----LVPAS--WHLENLEALKVSKCHRLIN-----LLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       263 ~~~~~~~L~~L~l~~c~~l~~-----l~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                        ..+++|+.|++++|. ++.     ++..+  +.+++|++|++++|. ++.     ++ ..+..++++|+.|++++|+
T Consensus       241 --~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~-~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          241 --KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK-TVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             --GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH-HHHHHHCTTCCEEECTTSB
T ss_pred             --ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHH-HHHHhcCCCceEEEccCCc
Confidence              578999999999985 443     34444  348999999998875 444     42 2333567999999999975

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=1.7e-12  Score=107.44  Aligned_cols=149  Identities=14%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      +++|++|++.+| .++.++ .+..+++|++|++++|.              +..++ .+..+++|++|+++++. ++...
T Consensus        43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~--------------~~~~~-~l~~l~~L~~L~l~~n~-l~~~~  104 (197)
T 4ezg_A           43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIH--------------ATNYN-PISGLSNLERLRIMGKD-VTSDK  104 (197)
T ss_dssp             HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCC--------------CSCCG-GGTTCTTCCEEEEECTT-CBGGG
T ss_pred             cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCC--------------CCcch-hhhcCCCCCEEEeECCc-cCccc
Confidence            456666666665 455555 45556666666666331              11111 23345666666666554 43211


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID  165 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  165 (352)
                      ... +  ..+++|++|++++| .+....+ ..+..+++|++|++++|..+..++.+.           .+++|+.|++++
T Consensus       105 ~~~-l--~~l~~L~~L~Ls~n-~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~-----------~l~~L~~L~l~~  168 (197)
T 4ezg_A          105 IPN-L--SGLTSLTLLDISHS-AHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLK-----------TLPELKSLNIQF  168 (197)
T ss_dssp             SCC-C--TTCTTCCEEECCSS-BCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGG-----------GCSSCCEEECTT
T ss_pred             Chh-h--cCCCCCCEEEecCC-ccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhc-----------CCCCCCEEECCC
Confidence            111 1  24556666666665 3333222 224455666666666654344332211           455566665555


Q ss_pred             ccccccccccCCceeeccCcceEeeccC
Q 044585          166 LPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                      +. +..+.    .+..+++|+.|+++++
T Consensus       169 n~-i~~~~----~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          169 DG-VHDYR----GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             BC-CCCCT----TGGGCSSCCEEEECBC
T ss_pred             CC-CcChH----HhccCCCCCEEEeeCc
Confidence            42 22221    2334555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.31  E-value=1.3e-11  Score=106.21  Aligned_cols=60  Identities=23%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH  303 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  303 (352)
                      +++|++|++++ +.++.++...+   ..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus       130 l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          130 LTKLKELRLNT-NQLQSIPAGAF---DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcccEEECcC-CcCCccCHHHc---CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            45566666655 34555544433   45556666666655 3444433 34455666666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.31  E-value=6.4e-12  Score=110.56  Aligned_cols=144  Identities=18%  Similarity=0.243  Sum_probs=71.9

Q ss_pred             eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccc
Q 044585           65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL  144 (352)
Q Consensus        65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  144 (352)
                      ..+++|++|+++++. ++..+. .    ..+++|++|++++| .+.....   +..+++|++|++++|. +..+..+.  
T Consensus        65 ~~l~~L~~L~L~~n~-l~~~~~-l----~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~n~-i~~~~~l~--  131 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNK-LTDIKP-L----ANLKNLGWLFLDEN-KVKDLSS---LKDLKKLKSLSLEHNG-ISDINGLV--  131 (291)
T ss_dssp             GGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-CCCCGGG---GTTCTTCCEEECTTSC-CCCCGGGG--
T ss_pred             hcCCCCCEEEccCCc-cCCCcc-c----ccCCCCCEEECCCC-cCCCChh---hccCCCCCEEECCCCc-CCCChhhc--
Confidence            345666666666554 443322 1    34566666666665 3433221   4456666666666653 33221111  


Q ss_pred             cccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchh
Q 044585          145 NAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENF  223 (352)
Q Consensus       145 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~  223 (352)
                               .+++|+.|+++++. ++.+ .   .+..+++|+.|++++| .++.+.+   ...+++|+.|+ +.+.++.+
T Consensus       132 ---------~l~~L~~L~l~~n~-l~~~-~---~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          132 ---------HLPQLESLYLGNNK-ITDI-T---VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             ---------GCTTCCEEECCSSC-CCCC-G---GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred             ---------CCCCCCEEEccCCc-CCcc-h---hhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCcCCCC
Confidence                     46666666666542 3332 1   3455677777777766 4444322   22444444444 33333322


Q ss_pred             hhhcccCCCCCcccccCCcceeeccc
Q 044585          224 LLAHQVQPLFDEKLTFPQLKELKLSR  249 (352)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~l~~  249 (352)
                      .          ++..+++|+.|++++
T Consensus       194 ~----------~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          194 R----------ALAGLKNLDVLELFS  209 (291)
T ss_dssp             G----------GGTTCTTCSEEEEEE
T ss_pred             h----------hhccCCCCCEEECcC
Confidence            1          123455666666665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.30  E-value=2.4e-11  Score=100.50  Aligned_cols=57  Identities=19%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCC
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKC  302 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  302 (352)
                      +++|++|++++|..++.++  .+   ..+++|+.|++++| .++.++ .+..+++|++|+++++
T Consensus       135 l~~L~~L~L~~n~~i~~~~--~l---~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIM--PL---KTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCG--GG---GGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC
T ss_pred             CCCCCEEEccCCCCccccH--hh---cCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCc
Confidence            4556666666544344443  12   35555666665555 334443 3445555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.28  E-value=1.4e-11  Score=118.92  Aligned_cols=100  Identities=16%  Similarity=0.283  Sum_probs=48.2

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      +++|+.|++.+| .+..++ .+..+++|++|+|++|.              +..++. +..+++|+.|++++|. +..++
T Consensus        42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~--------------l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~  103 (605)
T 1m9s_A           42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK--------------LTDIKP-LTNLKNLGWLFLDENK-IKDLS  103 (605)
T ss_dssp             HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSC--------------CCCCGG-GGGCTTCCEEECCSSC-CCCCT
T ss_pred             CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCC--------------CCCChh-hccCCCCCEEECcCCC-CCCCh
Confidence            555666666655 444443 24556666666666331              122222 3455556666655554 44322


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                       ..    ..+++|++|++++| .+....   .+..+++|+.|++++|
T Consensus       104 -~l----~~l~~L~~L~Ls~N-~l~~l~---~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A          104 -SL----KDLKKLKSLSLEHN-GISDIN---GLVHLPQLESLYLGNN  141 (605)
T ss_dssp             -TS----TTCTTCCEEECTTS-CCCCCG---GGGGCTTCSEEECCSS
T ss_pred             -hh----ccCCCCCEEEecCC-CCCCCc---cccCCCccCEEECCCC
Confidence             11    23555555555555 233321   1335555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.28  E-value=2.7e-11  Score=104.15  Aligned_cols=86  Identities=24%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccC
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      +.+++|++|++++ +.++.++...+   ..+++|+.|+++++ .++.++. .+..+++|++|+++++ +++.+++ ..+.
T Consensus       104 ~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~  176 (251)
T 3m19_A          104 DHLTQLDKLYLGG-NQLKSLPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFD  176 (251)
T ss_dssp             TTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT
T ss_pred             cccCCCCEEEcCC-CcCCCcChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCH-HHHh
Confidence            4578999999999 57888877665   67899999999998 6777776 5788999999999777 5666644 3567


Q ss_pred             ccccccEEEEeccc
Q 044585          316 SLIILQSMTIADCK  329 (352)
Q Consensus       316 ~l~~L~~L~i~~c~  329 (352)
                      .+++|+.|++++++
T Consensus       177 ~l~~L~~L~l~~N~  190 (251)
T 3m19_A          177 RLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSCC
T ss_pred             CCCCCCEEEeeCCc
Confidence            78999999999865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=9e-13  Score=119.74  Aligned_cols=265  Identities=9%  Similarity=-0.020  Sum_probs=133.6

Q ss_pred             eccccccceEe-ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccC-ccceeEeccCCCcceeccCCCC
Q 044585           13 SMTHCPNMKTF-SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFR-DIEHLQLSHFPRLREIWHGQAV   90 (352)
Q Consensus        13 ~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l   90 (352)
                      .+.++ .++.. |......++|++|++++|.+.....         ..+...+..++ +|++|++++|. ++...... +
T Consensus         4 ~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~-l   71 (362)
T 3goz_A            4 KLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSIST---------VELIQAFANTPASVTSLNLSGNS-LGFKNSDE-L   71 (362)
T ss_dssp             ECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCH---------HHHHHHHHTCCTTCCEEECCSSC-GGGSCHHH-H
T ss_pred             ccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHH---------HHHHHHHHhCCCceeEEECcCCC-CCHHHHHH-H
Confidence            44454 33322 2222344558888887543222110         11113334566 78888888775 54421111 1


Q ss_pred             CC---CCCCCccEEEEecCCCCcccCCchh---hhcC-CCCcEEEEccCCCcceeeeeccccccccccCCC-CcccCeec
Q 044585           91 PV---SFFNNLRQLAVDDCTNMSSAIPTNL---LRCL-NNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPR-FPRLNRLR  162 (352)
Q Consensus        91 ~~---~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~  162 (352)
                      ..   ..+++|++|++++| .+....+...   +..+ ++|++|++++|. +.....    ......+. . .++|++|+
T Consensus        72 ~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~----~~l~~~l~-~~~~~L~~L~  144 (362)
T 3goz_A           72 VQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSS----SEFKQAFS-NLPASITSLN  144 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH----HHHHHHHT-TSCTTCCEEE
T ss_pred             HHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHH----HHHHHHHH-hCCCceeEEE
Confidence            00   01267888888877 4554443221   2333 678888887765 322211    11111111 2 24788888


Q ss_pred             ccccccccccccc--CCceeecc-CcceEeeccCCCCcccccchhh---hcc-CCCCCCC-CCCccchhhhhcccCCCCC
Q 044585          163 LIDLPKLKRFCNF--TGNIIELS-ELENLTIENCPDMETFISNSVV---HVT-TNNKEPQ-KLTSEENFLLAHQVQPLFD  234 (352)
Q Consensus       163 l~~~~~l~~~~~~--~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~---~~~-~~L~~L~-~~~~l~~~~~~~~~~~~~~  234 (352)
                      ++++. +++....  ...+..++ +|++|++++| .+++..+..+.   ..+ ++|+.|+ +.+.++...... .   ..
T Consensus       145 Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~-l---~~  218 (362)
T 3goz_A          145 LRGND-LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE-L---AY  218 (362)
T ss_dssp             CTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH-H---HH
T ss_pred             ccCCc-CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH-H---HH
Confidence            77653 2211000  00122333 7888888877 45443332222   233 4777777 555555411100 0   00


Q ss_pred             cccc-cCCcceeeccccccccccccccccc-ccccCCcceEEEecCC-------CcccccCCccCCCCCcEEeecCCc
Q 044585          235 EKLT-FPQLKELKLSRLHKVQHLWKENDES-NKAFANLKSLEIFECS-------KLQKLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       235 ~~~~-~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      .+.. .++|++|+++++ .++..+...+.. ...+++|+.|++++|.       .+..++..+..+++|+.|++++++
T Consensus       219 ~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            0122 358999999884 555543321110 1466889999998874       123444556778888899997764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=3e-11  Score=106.21  Aligned_cols=101  Identities=18%  Similarity=0.339  Sum_probs=54.1

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN  145 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  145 (352)
                      .+++|++|+++++. +..++. .    ..+++|++|++++| .+....+   +..+++|+.|++++|. ++.++.+.   
T Consensus        44 ~l~~L~~L~l~~~~-i~~~~~-~----~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~l~---  109 (291)
T 1h6t_A           44 ELNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSSLK---  109 (291)
T ss_dssp             HHHTCCEEECTTSC-CCCCTT-G----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGGGT---
T ss_pred             hcCcccEEEccCCC-cccChh-H----hcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCChhhc---
Confidence            45666777766664 444321 1    24666777777766 4444333   4466677777776653 33222111   


Q ss_pred             ccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585          146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                              .+++|+.|+++++. ++.+.    .+..+++|+.|+++++
T Consensus       110 --------~l~~L~~L~L~~n~-i~~~~----~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A          110 --------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN  144 (291)
T ss_dssp             --------TCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSS
T ss_pred             --------cCCCCCEEECCCCc-CCCCh----hhcCCCCCCEEEccCC
Confidence                    56666666666542 33321    2444566666666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=5.9e-11  Score=114.60  Aligned_cols=101  Identities=19%  Similarity=0.343  Sum_probs=47.6

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccc
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELN  145 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  145 (352)
                      .+++|+.|+++++. +..++. .    ..+++|+.|+|++| .+...++   +..+++|+.|++++|. +..++.+.   
T Consensus        41 ~L~~L~~L~l~~n~-i~~l~~-l----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~l~---  106 (605)
T 1m9s_A           41 ELNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKDLSSLK---  106 (605)
T ss_dssp             HHTTCCCCBCTTCC-CCCCTT-G----GGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCTTST---
T ss_pred             cCCCCCEEECcCCC-CCCChH-H----ccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCC-CCCChhhc---
Confidence            44555555555554 433221 1    24556666666655 3444333   3455666666666543 22221111   


Q ss_pred             ccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccC
Q 044585          146 AKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       146 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                              .+++|+.|+++++. +..+.    .+..+++|+.|.|++|
T Consensus       107 --------~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A          107 --------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNN  141 (605)
T ss_dssp             --------TCTTCCEEECTTSC-CCCCG----GGGGCTTCSEEECCSS
T ss_pred             --------cCCCCCEEEecCCC-CCCCc----cccCCCccCEEECCCC
Confidence                    45555555555442 22211    2344555566655555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=1.7e-10  Score=110.40  Aligned_cols=33  Identities=3%  Similarity=0.005  Sum_probs=18.8

Q ss_pred             cceeecccccccccccccccccccccCCcceEEEecCC
Q 044585          242 LKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECS  279 (352)
Q Consensus       242 L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~  279 (352)
                      |+.|++++ +.++.++....    .+++|+.|++++++
T Consensus       209 L~~L~Ls~-N~l~~lp~~l~----~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          209 EIFFRCRE-NRITHIPENIL----SLDPTCTIILEDNP  241 (571)
T ss_dssp             CEEEECCS-SCCCCCCGGGG----GSCTTEEEECCSSS
T ss_pred             ceEEecCC-CcceecCHHHh----cCCCCCEEEeeCCc
Confidence            46666666 35555554432    46666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.19  E-value=4.6e-11  Score=103.42  Aligned_cols=144  Identities=17%  Similarity=0.279  Sum_probs=77.6

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+++|++|++.+| .++.++ .+..+++|++|++++|              .+..++. +..+++|++|+++++. ++.+
T Consensus        39 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N--------------~i~~~~~-l~~l~~L~~L~L~~N~-l~~l  100 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN--------------QISDLSP-LKDLTKLEELSVNRNR-LKNL  100 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCCCGG-GTTCSSCCEEECCSSC-CSCC
T ss_pred             hcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC--------------ccCCChh-hccCCCCCEEECCCCc-cCCc
Confidence            3566666666666 555555 4556666777766633              2223333 4456666667666665 5443


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      +...     . ++|++|++++| .+....   .+..+++|++|++++|. ++.++.+.           .+++|+.|+++
T Consensus       101 ~~~~-----~-~~L~~L~L~~N-~l~~~~---~l~~l~~L~~L~Ls~N~-i~~~~~l~-----------~l~~L~~L~L~  158 (263)
T 1xeu_A          101 NGIP-----S-ACLSRLFLDNN-ELRDTD---SLIHLKNLEILSIRNNK-LKSIVMLG-----------FLSKLEVLDLH  158 (263)
T ss_dssp             TTCC-----C-SSCCEEECCSS-CCSBSG---GGTTCTTCCEEECTTSC-CCBCGGGG-----------GCTTCCEEECT
T ss_pred             Cccc-----c-CcccEEEccCC-ccCCCh---hhcCcccccEEECCCCc-CCCChHHc-----------cCCCCCEEECC
Confidence            3222     1 56666666666 444432   24466666666666653 33322111           46666666666


Q ss_pred             cccccccccccCCceeeccCcceEeeccC
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                      ++. +..+    ..+..+++|+.|+++++
T Consensus       159 ~N~-i~~~----~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          159 GNE-ITNT----GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             TSC-CCBC----TTSTTCCCCCEEEEEEE
T ss_pred             CCc-Ccch----HHhccCCCCCEEeCCCC
Confidence            543 3322    13445566666666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.19  E-value=4.3e-12  Score=115.22  Aligned_cols=244  Identities=12%  Similarity=0.095  Sum_probs=143.8

Q ss_pred             CCccEEeccccccceEec-----cCCCCCC-CceEEEecccccCcceeecCccchhhhhhceeeec-cCccceeEeccCC
Q 044585            7 PSLEQVSMTHCPNMKTFS-----RGISSTP-KLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIG-FRDIEHLQLSHFP   79 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~-----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~   79 (352)
                      ++|++|++.+| .++..+     ..+..++ +|++|++++|.+....+.         .+...+.. +++|++|++++|.
T Consensus        22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD---------ELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH---------HHHHHHHTSCTTCCEEECCSSC
T ss_pred             CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH---------HHHHHHhccCCCccEEECcCCc
Confidence            45999999999 576655     4456788 999999996533332111         11111112 3899999999998


Q ss_pred             CcceeccCCCCCC--CCC-CCccEEEEecCCCCcccCCchh---hhc-CCCCcEEEEccCCCcceeeeeccccccccccC
Q 044585           80 RLREIWHGQAVPV--SFF-NNLRQLAVDDCTNMSSAIPTNL---LRC-LNNLRCLEVRNCDLIEEVLHLEELNAKEEHIG  152 (352)
Q Consensus        80 ~l~~~~~~~~l~~--~~l-~~L~~L~l~~c~~l~~~~~~~~---~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  152 (352)
                       ++...... +..  ..+ ++|++|++++| .+....+...   +.. .++|++|++++|.. .+.    +.......+.
T Consensus        92 -l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~----~~~~l~~~l~  163 (362)
T 3goz_A           92 -LSYKSSDE-LVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIK----SSDELIQILA  163 (362)
T ss_dssp             -GGGSCHHH-HHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCG-GGS----CHHHHHHHHH
T ss_pred             -CChHHHHH-HHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcC-CHH----HHHHHHHHHh
Confidence             65432211 100  123 79999999999 4666544332   223 46999999999753 221    0011111112


Q ss_pred             CCCc-ccCeeccccccccccccccC--Cceeec-cCcceEeeccCCCCccc----ccchhhhccCCCCCCC-CCCccchh
Q 044585          153 PRFP-RLNRLRLIDLPKLKRFCNFT--GNIIEL-SELENLTIENCPDMETF----ISNSVVHVTTNNKEPQ-KLTSEENF  223 (352)
Q Consensus       153 ~~~~-~L~~L~l~~~~~l~~~~~~~--~~~~~~-~~L~~L~l~~c~~l~~~----~~~~~~~~~~~L~~L~-~~~~l~~~  223 (352)
                       .++ +|++|+++++. ++......  ..+..+ ++|+.|++++| .+++.    ++..+....++|++|+ +.+.++..
T Consensus       164 -~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          164 -AIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             -TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             -cCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence             454 99999999874 33221100  022334 59999999998 45542    1333432346899999 66676654


Q ss_pred             hhhcccCCCCCcccccCCcceeeccccccccccccc-------ccccccccCCcceEEEecCC
Q 044585          224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKE-------NDESNKAFANLKSLEIFECS  279 (352)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-------~~~~~~~~~~L~~L~l~~c~  279 (352)
                      ....-.    ..+..+++|+.|++++|. +..+...       .+   ..+++|+.|+++++.
T Consensus       241 ~~~~l~----~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~---~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          241 SLENLK----LLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAF---PNIQKIILVDKNGKE  295 (362)
T ss_dssp             CHHHHH----HTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTS---TTCCEEEEECTTSCB
T ss_pred             HHHHHH----HHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHh---ccCCceEEEecCCCc
Confidence            321100    002456899999999964 2222211       22   367788888888874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.12  E-value=1.3e-10  Score=96.75  Aligned_cols=147  Identities=14%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             EEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-eeccCccceeEeccCCCcceeccCCC
Q 044585           11 QVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MIGFRDIEHLQLSHFPRLREIWHGQA   89 (352)
Q Consensus        11 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~   89 (352)
                      .++..++ .++.+|..+  .++|++|+++++.              +..++.. +..+++|++|+++++. ++.++... 
T Consensus        11 ~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~--------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-   71 (208)
T 2o6s_A           11 TVECYSQ-GRTSVPTGI--PAQTTYLDLETNS--------------LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGV-   71 (208)
T ss_dssp             EEECCSS-CCSSCCSCC--CTTCSEEECCSSC--------------CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT-
T ss_pred             EEEecCC-CccCCCCCC--CCCCcEEEcCCCc--------------cCcCChhhhcccccCcEEECCCCc-cCccChhh-
Confidence            3444443 445555443  4567777777432              2222222 2356677777777665 55433322 


Q ss_pred             CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccc
Q 044585           90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKL  169 (352)
Q Consensus        90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  169 (352)
                      +  ..+++|++|++++| .+...++ ..+..+++|++|+++++. +..++.        ..+. .+++|+.|+++++. +
T Consensus        72 ~--~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~l~~N~-l  136 (208)
T 2o6s_A           72 F--NKLTSLTYLNLSTN-QLQSLPN-GVFDKLTQLKELALNTNQ-LQSLPD--------GVFD-KLTQLKDLRLYQNQ-L  136 (208)
T ss_dssp             T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT--------TTTT-TCTTCCEEECCSSC-C
T ss_pred             c--CCCCCcCEEECCCC-cCCccCH-hHhcCccCCCEEEcCCCc-CcccCH--------hHhc-cCCcCCEEECCCCc-c
Confidence            1  24567777777766 4444333 224566777777776653 332211        0011 46677777776642 3


Q ss_pred             ccccccCCceeeccCcceEeeccC
Q 044585          170 KRFCNFTGNIIELSELENLTIENC  193 (352)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~c  193 (352)
                      +.+...  .+..+++|+.|+++++
T Consensus       137 ~~~~~~--~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          137 KSVPDG--VFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             SCCCTT--TTTTCTTCCEEECCSC
T ss_pred             ceeCHH--HhccCCCccEEEecCC
Confidence            333221  2445667777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.10  E-value=5.5e-11  Score=95.57  Aligned_cols=135  Identities=16%  Similarity=0.226  Sum_probs=81.6

Q ss_pred             CCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCC
Q 044585           30 TPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNM  109 (352)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l  109 (352)
                      .++|++|++++|.+.            ...+|..+..+++|++|++++|. ++.+ ..  +  ..+++|++|++++| .+
T Consensus        23 ~~~L~~L~l~~n~l~------------~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~--~--~~l~~L~~L~Ls~N-~l   83 (168)
T 2ell_A           23 PAAVRELVLDNCKSN------------DGKIEGLTAEFVNLEFLSLINVG-LISV-SN--L--PKLPKLKKLELSEN-RI   83 (168)
T ss_dssp             TTSCSEEECCSCBCB------------TTBCSSCCGGGGGCCEEEEESSC-CCCC-SS--C--CCCSSCCEEEEESC-CC
T ss_pred             cccCCEEECCCCCCC------------hhhHHHHHHhCCCCCEEeCcCCC-CCCh-hh--h--ccCCCCCEEECcCC-cC
Confidence            567777777743111            02455555677788888888776 6554 22  2  35778888888887 45


Q ss_pred             cccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccC-CceeeccCcceE
Q 044585          110 SSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFT-GNIIELSELENL  188 (352)
Q Consensus       110 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L  188 (352)
                      ....+ ..+..+++|+.|++++|. +..++...       .+. .+++|+.|++++++ +..++... ..+..+++|+.|
T Consensus        84 ~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------~l~-~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           84 FGGLD-MLAEKLPNLTHLNLSGNK-LKDISTLE-------PLK-KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             CSCCC-HHHHHCTTCCEEECBSSS-CCSSGGGG-------GGS-SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred             chHHH-HHHhhCCCCCEEeccCCc-cCcchhHH-------HHh-cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence            55333 335568888888888864 33332111       111 67788888887764 33322200 035667888888


Q ss_pred             eeccCC
Q 044585          189 TIENCP  194 (352)
Q Consensus       189 ~l~~c~  194 (352)
                      ++.+|.
T Consensus       153 ~l~~n~  158 (168)
T 2ell_A          153 DGYDRE  158 (168)
T ss_dssp             TTEETT
T ss_pred             cCCCCC
Confidence            888874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.07  E-value=1.5e-09  Score=103.76  Aligned_cols=177  Identities=13%  Similarity=0.109  Sum_probs=117.9

Q ss_pred             ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccc
Q 044585           69 DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKE  148 (352)
Q Consensus        69 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  148 (352)
                      +|+.|+++++. ++.++..      .+++|++|++++| .+... | .   .+++|+.|++++|. ++.++.+       
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~------l~~~L~~L~Ls~N-~l~~i-p-~---~l~~L~~L~Ls~N~-l~~ip~l-------  118 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDN------LPPQITVLEITQN-ALISL-P-E---LPASLEYLDACDNR-LSTLPEL-------  118 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSC------CCTTCSEEECCSS-CCSCC-C-C---CCTTCCEEECCSSC-CSCCCCC-------
T ss_pred             CccEEEeCCCC-CCccCHh------HcCCCCEEECcCC-CCccc-c-c---ccCCCCEEEccCCC-CCCcchh-------
Confidence            78888888776 6664433      3577888888887 55543 3 2   46788888888864 4334321       


Q ss_pred             cccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhc
Q 044585          149 EHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAH  227 (352)
Q Consensus       149 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~  227 (352)
                            ..+|+.|+++++. ++.++.      .+++|+.|+++++ .++.+ |.    .+++|+.|+ +.+.++.++.  
T Consensus       119 ------~~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N-~l~~l-p~----~l~~L~~L~Ls~N~L~~lp~--  177 (571)
T 3cvr_A          119 ------PASLKHLDVDNNQ-LTMLPE------LPALLEYINADNN-QLTML-PE----LPTSLEVLSVRNNQLTFLPE--  177 (571)
T ss_dssp             ------CTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSCC-CC----CCTTCCEEECCSSCCSCCCC--
T ss_pred             ------hcCCCEEECCCCc-CCCCCC------cCccccEEeCCCC-ccCcC-CC----cCCCcCEEECCCCCCCCcch--
Confidence                  1178888887753 444322      4678888888877 45554 43    457777777 6566654322  


Q ss_pred             ccCCCCCcccccCCcceeecccccccccccccccccccccCCc-------ceEEEecCCCcccccCCccCCCCCcEEeec
Q 044585          228 QVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANL-------KSLEIFECSKLQKLVPASWHLENLEALKVS  300 (352)
Q Consensus       228 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~  300 (352)
                       +       .  ++|+.|++++ +.++.++.  +   ..  +|       +.|++++| .++.+|..+..+++|++|+++
T Consensus       178 -l-------~--~~L~~L~Ls~-N~L~~lp~--~---~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~  238 (571)
T 3cvr_A          178 -L-------P--ESLEALDVST-NLLESLPA--V---PV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILE  238 (571)
T ss_dssp             -C-------C--TTCCEEECCS-SCCSSCCC--C---C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECC
T ss_pred             -h-------h--CCCCEEECcC-CCCCchhh--H---HH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEee
Confidence             1       2  6899999998 47777765  3   11  56       99999987 677888877789999999998


Q ss_pred             CCcccc
Q 044585          301 KCHRLI  306 (352)
Q Consensus       301 ~c~~l~  306 (352)
                      +++--.
T Consensus       239 ~N~l~~  244 (571)
T 3cvr_A          239 DNPLSS  244 (571)
T ss_dssp             SSSCCH
T ss_pred             CCcCCC
Confidence            775433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.07  E-value=3.5e-10  Score=94.14  Aligned_cols=13  Identities=23%  Similarity=0.552  Sum_probs=6.3

Q ss_pred             eccCcceEeeccC
Q 044585          181 ELSELENLTIENC  193 (352)
Q Consensus       181 ~~~~L~~L~l~~c  193 (352)
                      .+++|+.|+++++
T Consensus        98 ~l~~L~~L~L~~N  110 (208)
T 2o6s_A           98 KLTQLKELALNTN  110 (208)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CccCCCEEEcCCC
Confidence            3445555555444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=1.3e-09  Score=97.41  Aligned_cols=39  Identities=23%  Similarity=0.337  Sum_probs=24.3

Q ss_pred             ecCCccEEeccccccceEeccCCC-CCCCceEEEecccccC
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGIS-STPKLYVVQVTEREEG   44 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~   44 (352)
                      .+++++.|.+.+.-...++. .+. .+++|++|||+++.+.
T Consensus        23 ~~~~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~   62 (329)
T 3sb4_A           23 EANSITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIK   62 (329)
T ss_dssp             HHHHCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEEC
T ss_pred             hhCceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeE
Confidence            35678888888752211111 112 2889999999977665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.05  E-value=6.9e-11  Score=92.98  Aligned_cols=105  Identities=13%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             cCCccEEeccccccce--EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            6 FPSLEQVSMTHCPNMK--TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .++|++|++.+| .++  .+|..+..+++|++|++++|.+..              + ..+..+++|++|+++++. ++.
T Consensus        16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~-~~~~~l~~L~~L~Ls~n~-i~~   78 (149)
T 2je0_A           16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTS--------------I-ANLPKLNKLKKLELSDNR-VSG   78 (149)
T ss_dssp             GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCC--------------C-TTCCCCTTCCEEECCSSC-CCS
T ss_pred             CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCC--------------c-hhhhcCCCCCEEECCCCc-ccc
Confidence            456677777766 444  555555666666666666432221              1 223345555555555554 332


Q ss_pred             -eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccC
Q 044585           84 -IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        84 -~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  132 (352)
                       ++...    +.+++|++|++++| .+...+....+..+++|++|++++|
T Consensus        79 ~~~~~~----~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           79 GLEVLA----EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CTHHHH----HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             hHHHHh----hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence             11111    12455555555554 2333211122344555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.05  E-value=7.1e-10  Score=93.86  Aligned_cols=130  Identities=16%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585          155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF  233 (352)
Q Consensus       155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~  233 (352)
                      .++|+.|+++++. +..+...  .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ +.+.++.+....      
T Consensus        39 ~~~L~~L~Ls~n~-i~~~~~~--~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~------  107 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKLEPG--VFDSLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAV------  107 (229)
T ss_dssp             CTTCSEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT------
T ss_pred             CCCCCEEEcCCCc-cCccCHH--HhhCccCCcEEECCCC-CCCCc-ChhhcccCCCcCEEECCCCcCCccChhH------
Confidence            4567777776543 3332111  3445667777777665 34443 333333555555555 444444333221      


Q ss_pred             CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585          234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH  303 (352)
Q Consensus       234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  303 (352)
                        +..+++|++|++++ +.++.++...    ..+++|+.|+++++ .++.++. .+..+++|++|++.+++
T Consensus       108 --~~~l~~L~~L~Ls~-N~l~~lp~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          108 --FDRLVHLKELFMCC-NKLTELPRGI----ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             --TTTCTTCCEEECCS-SCCCSCCTTG----GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             --hCcchhhCeEeccC-CcccccCccc----ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence              23455666666655 3445444332    35556666666554 3444442 24455566666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.04  E-value=5.6e-11  Score=102.88  Aligned_cols=21  Identities=10%  Similarity=-0.015  Sum_probs=14.0

Q ss_pred             ccccCCcceeeccccccccccc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLW  257 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~  257 (352)
                      +..+++|+.|+++++ .+...+
T Consensus       168 l~~l~~L~~L~l~~N-~~~~~~  188 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQ-KCVNEP  188 (263)
T ss_dssp             STTCCCCCEEEEEEE-EEECCC
T ss_pred             hccCCCCCEEeCCCC-cccCCc
Confidence            355778888888884 444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.04  E-value=8.7e-10  Score=92.70  Aligned_cols=149  Identities=14%  Similarity=0.209  Sum_probs=93.4

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      +.++..++ +++.+|..+  .++|++|+++++              .+..++. .+..+++|++|+++++. ++.+....
T Consensus        14 ~~v~c~~~-~l~~iP~~l--~~~l~~L~l~~n--------------~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~   75 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNL--PETITEIRLEQN--------------TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDA   75 (220)
T ss_dssp             TEEECTTS-CCSSCCSSC--CTTCCEEECCSS--------------CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTT
T ss_pred             CEEEcCCC-CcCcCCCcc--CcCCCEEECCCC--------------cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHH
Confidence            45666665 677777655  367888888843              3333332 34567888888888876 66553322


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK  168 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  168 (352)
                       +  ..+++|++|+++++ .+...+ ...+..+++|+.|++++|. +..++.        ..+. .+++|+.|+++++. 
T Consensus        76 -~--~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~L~~N~-  139 (220)
T 2v9t_B           76 -F--QGLRSLNSLVLYGN-KITELP-KSLFEGLFSLQLLLLNANK-INCLRV--------DAFQ-DLHNLNLLSLYDNK-  139 (220)
T ss_dssp             -T--TTCSSCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------TTTT-TCTTCCEEECCSSC-
T ss_pred             -h--hCCcCCCEEECCCC-cCCccC-HhHccCCCCCCEEECCCCC-CCEeCH--------HHcC-CCCCCCEEECCCCc-
Confidence             2  35788888888887 455543 3445678888888888864 333211        1112 57788888887754 


Q ss_pred             cccccccCCceeeccCcceEeeccCC
Q 044585          169 LKRFCNFTGNIIELSELENLTIENCP  194 (352)
Q Consensus       169 l~~~~~~~~~~~~~~~L~~L~l~~c~  194 (352)
                      ++.+...  .+..+++|+.|++++++
T Consensus       140 l~~~~~~--~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          140 LQTIAKG--TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CSCCCTT--TTTTCTTCCEEECCSSC
T ss_pred             CCEECHH--HHhCCCCCCEEEeCCCC
Confidence            4443321  35567888888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.01  E-value=1.9e-09  Score=90.61  Aligned_cols=149  Identities=12%  Similarity=0.179  Sum_probs=95.0

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc--eeeeccCccceeEeccCCCcceeccC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY--EVMIGFRDIEHLQLSHFPRLREIWHG   87 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~   87 (352)
                      +++++.++ .++.+|..+  .+.+++|+++++              .+..++  ..+..+++|++|+++++. ++.++..
T Consensus        14 ~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N--------------~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~   75 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPEHI--PQYTAELRLNNN--------------EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG   75 (220)
T ss_dssp             TEEECCSS-CCSSCCSCC--CTTCSEEECCSS--------------CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT
T ss_pred             CEeEeCCC-CcccCccCC--CCCCCEEEcCCC--------------cCCccCchhhhccCCCCCEEECCCCc-CCEECHH
Confidence            57777776 677777655  456788888843              233332  224578889999998877 7665543


Q ss_pred             CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585           88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP  167 (352)
Q Consensus        88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  167 (352)
                      . +  ..+++|++|+++++ .+...++ ..+..+++|++|++++|. +..++.        ..+. .+++|+.|+++++.
T Consensus        76 ~-~--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~--------~~~~-~l~~L~~L~L~~N~  140 (220)
T 2v70_A           76 A-F--EGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSNR-ITCVGN--------DSFI-GLSSVRLLSLYDNQ  140 (220)
T ss_dssp             T-T--TTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTSC-CCCBCT--------TSST-TCTTCSEEECTTSC
T ss_pred             H-h--CCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCCc-CCeECH--------hHcC-CCccCCEEECCCCc
Confidence            3 2  35788899999887 5655444 346778888999888865 333211        0111 56778888887653


Q ss_pred             ccccccccCCceeeccCcceEeeccCC
Q 044585          168 KLKRFCNFTGNIIELSELENLTIENCP  194 (352)
Q Consensus       168 ~l~~~~~~~~~~~~~~~L~~L~l~~c~  194 (352)
                       ++.+...  .+..+++|+.|++++++
T Consensus       141 -l~~~~~~--~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          141 -ITTVAPG--AFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             -CCCBCTT--TTTTCTTCCEEECCSCC
T ss_pred             -CCEECHH--HhcCCCCCCEEEecCcC
Confidence             4433221  34556778888777763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.00  E-value=1.2e-12  Score=125.70  Aligned_cols=120  Identities=16%  Similarity=0.161  Sum_probs=68.9

Q ss_pred             ccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCc
Q 044585          157 RLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDE  235 (352)
Q Consensus       157 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~  235 (352)
                      .|+.|+++++ .++.++    .+..+++|+.|+++++ .++.+ |..+. .+++|+.|+ +.+.++.++ .         
T Consensus       442 ~L~~L~Ls~n-~l~~lp----~~~~l~~L~~L~Ls~N-~l~~l-p~~~~-~l~~L~~L~Ls~N~l~~lp-~---------  503 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLC----HLEQLLLVTHLDLSHN-RLRAL-PPALA-ALRCLEVLQASDNALENVD-G---------  503 (567)
T ss_dssp             TCSEEECTTS-CCSSCC----CGGGGTTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSSCCCCCG-G---------
T ss_pred             CceEEEecCC-CCCCCc----CccccccCcEeecCcc-ccccc-chhhh-cCCCCCEEECCCCCCCCCc-c---------
Confidence            3555555543 233322    1344556666666655 34433 44433 566666666 555555432 1         


Q ss_pred             ccccCCcceeeccccccccccc-ccccccccccCCcceEEEecCCCcccccCCc----cCCCCCcEEee
Q 044585          236 KLTFPQLKELKLSRLHKVQHLW-KENDESNKAFANLKSLEIFECSKLQKLVPAS----WHLENLEALKV  299 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l  299 (352)
                      ++.+++|+.|++++ +.++.+. ...+   ..+++|+.|+++++ .++.+|+..    ..+++|+.|++
T Consensus       504 l~~l~~L~~L~Ls~-N~l~~~~~p~~l---~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          504 VANLPRLQELLLCN-NRLQQSAAIQPL---VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GTTCSSCCEEECCS-SCCCSSSTTGGG---GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCCCcEEECCC-CCCCCCCCcHHH---hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            35677888888888 4666663 3334   57888888888887 455555432    23778887753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.97  E-value=2.4e-09  Score=90.55  Aligned_cols=148  Identities=18%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      +.++..++ +++.+|..+  .++|++|+++++.              +..+ +..+..+++|++|+++++. ++.++...
T Consensus        22 ~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~--------------i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~   83 (229)
T 3e6j_A           22 TTVDCRSK-RHASVPAGI--PTNAQILYLHDNQ--------------ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV   83 (229)
T ss_dssp             TEEECTTS-CCSSCCSCC--CTTCSEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             CEeEccCC-CcCccCCCC--CCCCCEEEcCCCc--------------cCccCHHHhhCccCCcEEECCCCC-CCCcChhh
Confidence            44555554 566666655  3777888877432              2222 3334567777777777776 55544332


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccc
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPK  168 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  168 (352)
                       +  ..+++|++|++++| .+...++ ..+..+++|++|++++|. +..++...         . .+++|+.|++++. .
T Consensus        84 -~--~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~~---------~-~l~~L~~L~L~~N-~  146 (229)
T 3e6j_A           84 -F--DSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCNK-LTELPRGI---------E-RLTHLTHLALDQN-Q  146 (229)
T ss_dssp             -T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCSCCTTG---------G-GCTTCSEEECCSS-C
T ss_pred             -c--ccCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCCc-ccccCccc---------c-cCCCCCEEECCCC-c
Confidence             2  24677777777776 4555433 335567777777777754 33332111         1 5667777777664 3


Q ss_pred             cccccccCCceeeccCcceEeeccCC
Q 044585          169 LKRFCNFTGNIIELSELENLTIENCP  194 (352)
Q Consensus       169 l~~~~~~~~~~~~~~~L~~L~l~~c~  194 (352)
                      ++.+...  .+..+++|+.|.+.+++
T Consensus       147 l~~~~~~--~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          147 LKSIPHG--AFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCCTT--TTTTCTTCCEEECTTSC
T ss_pred             CCccCHH--HHhCCCCCCEEEeeCCC
Confidence            4433221  34456677777776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.94  E-value=2.1e-09  Score=86.17  Aligned_cols=32  Identities=6%  Similarity=0.208  Sum_probs=14.8

Q ss_pred             CCccEEeccccccce--EeccCCCCCCCceEEEec
Q 044585            7 PSLEQVSMTHCPNMK--TFSRGISSTPKLYVVQVT   39 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~   39 (352)
                      ++|++|++.+| .++  .+|..+..+++|++|+++
T Consensus        24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~   57 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLI   57 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEE
T ss_pred             ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCc
Confidence            44445555444 333  444444444455555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.94  E-value=3e-09  Score=96.40  Aligned_cols=165  Identities=16%  Similarity=0.153  Sum_probs=96.7

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-ee-ccCccceeEeccCCCcceeccC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MI-GFRDIEHLQLSHFPRLREIWHG   87 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~L~~L~l~~~~~l~~~~~~   87 (352)
                      +.+++.++ +++.+|..+  .+.+++|+++++              .+..++.. +. .+++|++|+++++. ++.++..
T Consensus        21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N--------------~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~   82 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSHN--------------NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE   82 (361)
T ss_dssp             TEEECCSS-CCSSCCSSC--CTTCSEEECCSS--------------CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTT
T ss_pred             CEEEeCCC-CcCccCccC--CCCCCEEECCCC--------------CCCccChhhhhhcccccCEEECCCCc-CCccChh
Confidence            46666665 677777655  456788888843              33333332 22 67888888888776 6665543


Q ss_pred             CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585           88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP  167 (352)
Q Consensus        88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  167 (352)
                      . +  ..+++|++|+++++ .+....+ ..+..+++|+.|++++|. +..+..        ..+. .+++|+.|+++++.
T Consensus        83 ~-~--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~--------~~~~-~l~~L~~L~L~~N~  147 (361)
T 2xot_A           83 A-F--VPVPNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNNH-IVVVDR--------NAFE-DMAQLQKLYLSQNQ  147 (361)
T ss_dssp             T-T--TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECT--------TTTT-TCTTCCEEECCSSC
T ss_pred             h-c--cCCCCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCCc-ccEECH--------HHhC-CcccCCEEECCCCc
Confidence            3 2  35778888888887 4655443 335677888888888765 333311        1111 57788888887653


Q ss_pred             ccccccccC-CceeeccCcceEeeccCCCCcccccchhhhccCC
Q 044585          168 KLKRFCNFT-GNIIELSELENLTIENCPDMETFISNSVVHVTTN  210 (352)
Q Consensus       168 ~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  210 (352)
                       ++.++... .....+++|+.|+++++ .++.+ +...+..+++
T Consensus       148 -l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~  188 (361)
T 2xot_A          148 -ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKL-PLTDLQKLPA  188 (361)
T ss_dssp             -CCSCCGGGTC----CTTCCEEECCSS-CCCCC-CHHHHHHSCH
T ss_pred             -CCeeCHHHhcCcccCCcCCEEECCCC-CCCcc-CHHHhhhccH
Confidence             44433211 01145778888888776 55554 3333334444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.94  E-value=3.9e-09  Score=88.71  Aligned_cols=131  Identities=13%  Similarity=0.130  Sum_probs=84.3

Q ss_pred             CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585          155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF  233 (352)
Q Consensus       155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~  233 (352)
                      .++|+.|++.+.. ++.+...  .+..+++|+.|+++++ .++.+.+..+ .++++|+.|+ +.+.++.++...      
T Consensus        31 ~~~l~~L~l~~n~-i~~i~~~--~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~------   99 (220)
T 2v9t_B           31 PETITEIRLEQNT-IKVIPPG--AFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGNKITELPKSL------   99 (220)
T ss_dssp             CTTCCEEECCSSC-CCEECTT--SSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSSCCCCCCTTT------
T ss_pred             CcCCCEEECCCCc-CCCcCHh--HhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCCcCCccCHhH------
Confidence            3578888887653 4443321  3556788888888877 5655534444 3677777777 666666544332      


Q ss_pred             CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585          234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH  303 (352)
Q Consensus       234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  303 (352)
                        +..+++|++|++++ +.++.++...+   ..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus       100 --f~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          100 --FEGLFSLQLLLLNA-NKINCLRVDAF---QDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             --TTTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --ccCCCCCCEEECCC-CCCCEeCHHHc---CCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence              34567788888877 46666655555   56777888888776 4555554 35667778888876664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.93  E-value=4.6e-09  Score=88.25  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=88.4

Q ss_pred             CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585          155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF  233 (352)
Q Consensus       155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~  233 (352)
                      .+.++.|++++.. ++.+.... .+..+++|+.|+++++ .++.+ +...+..+++|+.|+ +.+.++.+....      
T Consensus        31 ~~~~~~L~L~~N~-l~~~~~~~-~~~~l~~L~~L~L~~N-~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------  100 (220)
T 2v70_A           31 PQYTAELRLNNNE-FTVLEATG-IFKKLPQLRKINFSNN-KITDI-EEGAFEGASGVNEILLTSNRLENVQHKM------  100 (220)
T ss_dssp             CTTCSEEECCSSC-CCEECCCC-CGGGCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGG------
T ss_pred             CCCCCEEEcCCCc-CCccCchh-hhccCCCCCEEECCCC-cCCEE-CHHHhCCCCCCCEEECCCCccCccCHhH------
Confidence            4467888887753 44442211 3567889999999887 56665 333334777888887 666666554432      


Q ss_pred             CcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCcc
Q 044585          234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHR  304 (352)
Q Consensus       234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~  304 (352)
                        +..+++|++|++++ +.++.++...+   ..+++|+.|+++++ .++.+ |..+..+++|++|++++++-
T Consensus       101 --~~~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          101 --FKGLESLKTLMLRS-NRITCVGNDSF---IGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             --GTTCSSCCEEECTT-SCCCCBCTTSS---TTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             --hcCCcCCCEEECCC-CcCCeECHhHc---CCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence              35577888888888 46666655555   57788888888876 45555 55667788888888877653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=1e-09  Score=88.76  Aligned_cols=107  Identities=17%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             ccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccc
Q 044585           69 DIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKE  148 (352)
Q Consensus        69 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  148 (352)
                      +|+.|+++++. ++.+ ..  +  ..+++|++|++++| .+...++ ..+..+++|+.|++++|. +..++...      
T Consensus        43 ~L~~L~Ls~N~-l~~~-~~--l--~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~------  107 (176)
T 1a9n_A           43 QFDAIDFSDNE-IRKL-DG--F--PLLRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNNS-LVELGDLD------  107 (176)
T ss_dssp             CCSEEECCSSC-CCEE-CC--C--CCCSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSCC-CCCGGGGG------
T ss_pred             CCCEEECCCCC-CCcc-cc--c--ccCCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCCc-CCcchhhH------
Confidence            55555555554 4443 11  1  23556666666655 3444322 223455666666666543 22222111      


Q ss_pred             cccCCCCcccCeeccccccccccccccC-CceeeccCcceEeeccC
Q 044585          149 EHIGPRFPRLNRLRLIDLPKLKRFCNFT-GNIIELSELENLTIENC  193 (352)
Q Consensus       149 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c  193 (352)
                       .+. .+++|+.|++++++ +..++... ..+..+|+|+.|+++++
T Consensus       108 -~l~-~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          108 -PLA-SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             -GGG-GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             -hhh-cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence             011 45566666665543 22221100 01445666777666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=4.6e-09  Score=93.84  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=46.9

Q ss_pred             cCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCc-EEeecCCccccccccccccCc
Q 044585          239 FPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLE-ALKVSKCHRLINLLTLSTSRS  316 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~  316 (352)
                      +++|+.+++.+ +.++.++..++   ..+++|+.+.+.+.  ++.++. .+..+++|+ .+++.+  .++.+.. ..+..
T Consensus       225 ~~~L~~l~L~~-n~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~  295 (329)
T 3sb4_A          225 MPNLVSLDISK-TNATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMG  295 (329)
T ss_dssp             CTTCCEEECTT-BCCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTT
T ss_pred             cCCCeEEECCC-CCcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-hhhhC
Confidence            45666666665 34666666666   56666666666653  555543 355666666 666654  4555532 35566


Q ss_pred             cccccEEEEe
Q 044585          317 LIILQSMTIA  326 (352)
Q Consensus       317 l~~L~~L~i~  326 (352)
                      |++|+.+++.
T Consensus       296 c~~L~~l~l~  305 (329)
T 3sb4_A          296 CDNLRYVLAT  305 (329)
T ss_dssp             CTTEEEEEEC
T ss_pred             CccCCEEEeC
Confidence            6666666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.89  E-value=4e-09  Score=95.57  Aligned_cols=149  Identities=13%  Similarity=0.144  Sum_probs=93.7

Q ss_pred             chhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           54 NSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        54 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      +..+..+|..+.  +.++.|+++++. ++.++... +. ..+++|++|+++++ .+....+. .+..+++|++|++++|.
T Consensus        27 ~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           27 KQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             SSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             CCCcCccCccCC--CCCCEEECCCCC-CCccChhh-hh-hcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCCc
Confidence            345566666443  568899999886 77766554 32 15788999999988 56665543 36788899999999865


Q ss_pred             CcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhh---hccCC
Q 044585          134 LIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVV---HVTTN  210 (352)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~  210 (352)
                       ++.++.        ..+. .+++|+.|+++++. +..+...  .+..+++|+.|+++++ .++.+ |...+   ..+++
T Consensus       100 -l~~~~~--------~~~~-~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~~l~~  164 (361)
T 2xot_A          100 -LHTLDE--------FLFS-DLQALEVLLLYNNH-IVVVDRN--AFEDMAQLQKLYLSQN-QISRF-PVELIKDGNKLPK  164 (361)
T ss_dssp             -CCEECT--------TTTT-TCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSS-CCCSC-CGGGTC----CTT
T ss_pred             -CCcCCH--------HHhC-CCcCCCEEECCCCc-ccEECHH--HhCCcccCCEEECCCC-cCCee-CHHHhcCcccCCc
Confidence             444422        1111 67888888888764 3333221  3556788888888877 55554 44433   24566


Q ss_pred             CCCCC-CCCccchhh
Q 044585          211 NKEPQ-KLTSEENFL  224 (352)
Q Consensus       211 L~~L~-~~~~l~~~~  224 (352)
                      |+.|+ +.+.++.+.
T Consensus       165 L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          165 LMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEEECCSSCCCCCC
T ss_pred             CCEEECCCCCCCccC
Confidence            66666 555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=2.5e-09  Score=102.48  Aligned_cols=101  Identities=13%  Similarity=0.195  Sum_probs=47.9

Q ss_pred             CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccC
Q 044585            8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHG   87 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~   87 (352)
                      .|++|++.+| .++.+|. +..+++|++|++++              ..+..+|..++.+++|+.|+++++. ++.++ .
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~  503 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH--------------NRLRALPPALAALRCLEVLQASDNA-LENVD-G  503 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS--------------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCc--------------ccccccchhhhcCCCCCEEECCCCC-CCCCc-c
Confidence            3555555555 4444444 44555555555552              1223444444455555555555544 44433 2


Q ss_pred             CCCCCCCCCCccEEEEecCCCCcccC-CchhhhcCCCCcEEEEccC
Q 044585           88 QAVPVSFFNNLRQLAVDDCTNMSSAI-PTNLLRCLNNLRCLEVRNC  132 (352)
Q Consensus        88 ~~l~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~~  132 (352)
                      .    +.+++|+.|++++| .+.... |.. +..+++|+.|++++|
T Consensus       504 l----~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          504 V----ANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGN  543 (567)
T ss_dssp             G----TTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTS
T ss_pred             c----CCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCC
Confidence            1    23555555555554 343332 222 444555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.81  E-value=2.3e-09  Score=84.08  Aligned_cols=105  Identities=18%  Similarity=0.290  Sum_probs=80.8

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhh-hceeeeccCccceeEeccCCCcc
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQK-CYEVMIGFRDIEHLQLSHFPRLR   82 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~   82 (352)
                      ..+++|++|++.+| .++.+ ..+..+++|++|++++|              .+.. +|..+..+++|++|+++++. ++
T Consensus        39 ~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n--------------~i~~~~~~~~~~l~~L~~L~ls~N~-i~  101 (149)
T 2je0_A           39 DEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN--------------RVSGGLEVLAEKCPNLTHLNLSGNK-IK  101 (149)
T ss_dssp             TTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS--------------CCCSCTHHHHHHCTTCCEEECTTSC-CC
T ss_pred             hhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC--------------cccchHHHHhhhCCCCCEEECCCCc-CC
Confidence            45899999999999 77777 66788999999999954              2333 55555678999999999987 76


Q ss_pred             eec--cCCCCCCCCCCCccEEEEecCCCCcccCC--chhhhcCCCCcEEEEc
Q 044585           83 EIW--HGQAVPVSFFNNLRQLAVDDCTNMSSAIP--TNLLRCLNNLRCLEVR  130 (352)
Q Consensus        83 ~~~--~~~~l~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~  130 (352)
                      ..+  ...    +.+++|++|++++| .+...++  ...+..+++|+.|+++
T Consensus       102 ~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          102 DLSTIEPL----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             SHHHHGGG----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ChHHHHHH----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            643  222    46899999999998 5666554  1347789999998775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.81  E-value=1.5e-08  Score=83.09  Aligned_cols=101  Identities=13%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee--eeccCccceeEeccCCCcceeccC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV--MIGFRDIEHLQLSHFPRLREIWHG   87 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~   87 (352)
                      +++++.++ +++.+|..+.  .+|++|+++++              .+..++..  +..+++|++|+++++. ++.+...
T Consensus        11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n--------------~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~   72 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDN--------------ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN   72 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCSEEECCSC--------------CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT
T ss_pred             CEEEcCCC-CcCcCccCCC--CCCCEEECCCC--------------cCCccCCccccccCCCCCEEECCCCC-CCCcCHh
Confidence            56777776 6677766553  37777777743              33333332  4566777777777765 5544222


Q ss_pred             CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      . +  ..+++|++|+++++ .+....+. .+..+++|++|++++|.
T Consensus        73 ~-~--~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           73 A-F--EGASHIQELQLGEN-KIKEISNK-MFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             T-T--TTCTTCCEEECCSC-CCCEECSS-SSTTCTTCCEEECCSSC
T ss_pred             H-c--CCcccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc
Confidence            2 1  34667777777776 45554442 24566777777777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.81  E-value=1.6e-08  Score=83.05  Aligned_cols=124  Identities=15%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQA   89 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   89 (352)
                      +++++.++ .++.+|..+  .++|++|++++              ..+..+|..+..+++|+.|+++++. ++.+.... 
T Consensus        13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~--------------n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~-   73 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDG--------------NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS-   73 (193)
T ss_dssp             TEEECTTS-CCSSCCSCC--CTTCCEEECCS--------------SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT-
T ss_pred             CEEEcCCC-CCCcCCCCC--CCCCCEEECCC--------------CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH-
Confidence            56777776 677777655  46888888884              3444566666778888888888877 66654433 


Q ss_pred             CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      +  ..+++|++|+++++ .+....+. .+..+++|+.|++++|. +..++.        ..+. .+++|+.|++.+.
T Consensus        74 f--~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~L~~N~-l~~~~~--------~~~~-~l~~L~~L~L~~N  136 (193)
T 2wfh_A           74 F--SNMTQLLTLILSYN-RLRCIPPR-TFDGLKSLRLLSLHGND-ISVVPE--------GAFN-DLSALSHLAIGAN  136 (193)
T ss_dssp             T--TTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSC-CCBCCT--------TTTT-TCTTCCEEECCSS
T ss_pred             c--cCCCCCCEEECCCC-ccCEeCHH-HhCCCCCCCEEECCCCC-CCeeCh--------hhhh-cCccccEEEeCCC
Confidence            2  35788888888887 56665543 36678888888888864 333321        0111 4666777766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.74  E-value=1.1e-06  Score=80.49  Aligned_cols=215  Identities=8%  Similarity=0.091  Sum_probs=113.6

Q ss_pred             CccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecccccc
Q 044585           68 RDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAK  147 (352)
Q Consensus        68 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  147 (352)
                      .+|+++.+..  .++.+.... +  ..+++|+.+.+.++ .+....... +. +.+|+.+.+..  .++.+..       
T Consensus       157 ~~L~~i~lp~--~l~~I~~~a-F--~~c~~L~~l~l~~n-~l~~I~~~a-F~-~~~L~~l~lp~--~l~~I~~-------  219 (401)
T 4fdw_A          157 STVQEIVFPS--TLEQLKEDI-F--YYCYNLKKADLSKT-KITKLPAST-FV-YAGIEEVLLPV--TLKEIGS-------  219 (401)
T ss_dssp             CCCCEEECCT--TCCEECSST-T--TTCTTCCEEECTTS-CCSEECTTT-TT-TCCCSEEECCT--TCCEECT-------
T ss_pred             CCceEEEeCC--CccEehHHH-h--hCcccCCeeecCCC-cceEechhh-Ee-ecccCEEEeCC--chheehh-------
Confidence            3566666664  344444433 2  23667777777654 344433322 22 46677777653  2333311       


Q ss_pred             ccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccc-----
Q 044585          148 EEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEE-----  221 (352)
Q Consensus       148 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~-----  221 (352)
                       ..+. .+++|+.+.+..  +++.+...  .+.. .+|+.+.+.+  .++.+ +...+.+|++|+.+. ..+.+.     
T Consensus       220 -~aF~-~~~~L~~l~l~~--~l~~I~~~--aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          220 -QAFL-KTSQLKTIEIPE--NVSTIGQE--AFRE-SGITTVKLPN--GVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             -TTTT-TCTTCCCEECCT--TCCEECTT--TTTT-CCCSEEEEET--TCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             -hHhh-CCCCCCEEecCC--CccCcccc--cccc-CCccEEEeCC--CccEE-ChhHhhCCCCCCEEEeCCccccCCccc
Confidence             1111 456677777643  23333221  1222 5777777744  45554 445555777777776 222211     


Q ss_pred             hhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeec
Q 044585          222 NFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVS  300 (352)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~  300 (352)
                      .+...        .+..+++|+.+++.+  .++.+...++   ..+++|+.+.+..  .++.+.. .+..+ +|+.+++.
T Consensus       290 ~I~~~--------aF~~c~~L~~l~l~~--~i~~I~~~aF---~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          290 MIHPY--------CLEGCPKLARFEIPE--SIRILGQGLL---GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EECTT--------TTTTCTTCCEECCCT--TCCEECTTTT---TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEEC
T ss_pred             EECHH--------HhhCCccCCeEEeCC--ceEEEhhhhh---cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEc
Confidence            11111        145667788887774  4777777776   6777888887754  3555543 45566 78888886


Q ss_pred             CCccccccccccccCccc-cccEEEEec
Q 044585          301 KCHRLINLLTLSTSRSLI-ILQSMTIAD  327 (352)
Q Consensus       301 ~c~~l~~~~~~~~~~~l~-~L~~L~i~~  327 (352)
                      +. .+..+.. ..+..++ +++.|.+..
T Consensus       354 ~n-~~~~l~~-~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          354 GT-TPPQVFE-KVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CS-SCCBCCC-SSCCCSCTTCCEEEECG
T ss_pred             CC-CCccccc-ccccCCCCCccEEEeCH
Confidence            55 3334422 2344442 456666544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.73  E-value=6.7e-07  Score=81.92  Aligned_cols=197  Identities=7%  Similarity=0.067  Sum_probs=130.8

Q ss_pred             eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc
Q 044585           64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE  143 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  143 (352)
                      +..+++|+.+++.++. ++.++... +.   ..+|+++.+.+  ++..+.. ..+..|++|+.+.+...  ++.+...  
T Consensus       176 F~~c~~L~~l~l~~n~-l~~I~~~a-F~---~~~L~~l~lp~--~l~~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~--  243 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTK-ITKLPAST-FV---YAGIEEVLLPV--TLKEIGS-QAFLKTSQLKTIEIPEN--VSTIGQE--  243 (401)
T ss_dssp             TTTCTTCCEEECTTSC-CSEECTTT-TT---TCCCSEEECCT--TCCEECT-TTTTTCTTCCCEECCTT--CCEECTT--
T ss_pred             hhCcccCCeeecCCCc-ceEechhh-Ee---ecccCEEEeCC--chheehh-hHhhCCCCCCEEecCCC--ccCcccc--
Confidence            3467899999998765 77776665 32   47899999975  4555443 44778999999999763  4443211  


Q ss_pred             ccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCC----CcccccchhhhccCCCCCCC-CCC
Q 044585          144 LNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPD----METFISNSVVHVTTNNKEPQ-KLT  218 (352)
Q Consensus       144 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~~~~~~~~~~~~~L~~L~-~~~  218 (352)
                            .+. . .+|+.+.+.+  .++.+...  .+..+++|+.+.+.+...    ...+ +...+.+|++|+.+. . +
T Consensus       244 ------aF~-~-~~L~~i~lp~--~i~~I~~~--aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~-~  309 (401)
T 4fdw_A          244 ------AFR-E-SGITTVKLPN--GVTNIASR--AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIP-E  309 (401)
T ss_dssp             ------TTT-T-CCCSEEEEET--TCCEECTT--TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCC-T
T ss_pred             ------ccc-c-CCccEEEeCC--CccEEChh--HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeC-C
Confidence                  111 2 5788887733  24433222  466789999999977521    1233 556666889998887 4 3


Q ss_pred             ccchhhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCC-CCCcE
Q 044585          219 SEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHL-ENLEA  296 (352)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~-~~L~~  296 (352)
                      .++.+....        +..+++|+.+.|..  .++.+...++   ..+ +|+.+.+.++. +..++. .+..+ .+++.
T Consensus       310 ~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF---~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~  374 (401)
T 4fdw_A          310 SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAF---NNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITV  374 (401)
T ss_dssp             TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSS---SSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCE
T ss_pred             ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhC---CCC-CCCEEEEcCCC-CcccccccccCCCCCccE
Confidence            344443322        46678999999965  5888888888   677 99999999873 344432 34455 47888


Q ss_pred             EeecC
Q 044585          297 LKVSK  301 (352)
Q Consensus       297 L~l~~  301 (352)
                      +++..
T Consensus       375 l~vp~  379 (401)
T 4fdw_A          375 IRVPA  379 (401)
T ss_dssp             EEECG
T ss_pred             EEeCH
Confidence            88854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.72  E-value=2.5e-08  Score=81.84  Aligned_cols=107  Identities=18%  Similarity=0.281  Sum_probs=83.2

Q ss_pred             CCccEEeccccccceEeccC--CCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcce
Q 044585            7 PSLEQVSMTHCPNMKTFSRG--ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      +++++|++.++ .++.++..  +..+++|++|+++++              .+..+ |..+..+++|++|+++++. ++.
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~   92 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN--------------QLTGIEPNAFEGASHIQELQLGENK-IKE   92 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS--------------CCCCBCTTTTTTCTTCCEEECCSCC-CCE
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC--------------CCCCcCHhHcCCcccCCEEECCCCc-CCc
Confidence            48999999998 78877754  678999999999954              23333 4556688999999999988 776


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL  134 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  134 (352)
                      ++... +  ..+++|++|+++++ .+....+.. +..+++|++|+++++..
T Consensus        93 ~~~~~-~--~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           93 ISNKM-F--LGLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECSSS-S--TTCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCCB
T ss_pred             cCHHH-h--cCCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCCc
Confidence            65543 2  35899999999998 576665543 67889999999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.72  E-value=1.7e-08  Score=81.49  Aligned_cols=133  Identities=11%  Similarity=0.071  Sum_probs=85.7

Q ss_pred             eeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccc
Q 044585          179 IIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLW  257 (352)
Q Consensus       179 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  257 (352)
                      ...+++|+.|.++++ .++.+ + .+....++|+.|+ +.+.++.+ .         .++.+++|++|++++ +.++.++
T Consensus        15 ~~~~~~L~~L~l~~n-~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~-~---------~l~~l~~L~~L~Ls~-N~l~~~~   80 (176)
T 1a9n_A           15 YTNAVRDRELDLRGY-KIPVI-E-NLGATLDQFDAIDFSDNEIRKL-D---------GFPLLRRLKTLLVNN-NRICRIG   80 (176)
T ss_dssp             EECTTSCEEEECTTS-CCCSC-C-CGGGGTTCCSEEECCSSCCCEE-C---------CCCCCSSCCEEECCS-SCCCEEC
T ss_pred             cCCcCCceEEEeeCC-CCchh-H-HhhhcCCCCCEEECCCCCCCcc-c---------ccccCCCCCEEECCC-CcccccC
Confidence            334556666666665 34433 2 1222233666666 44455443 1         145678899999998 4677776


Q ss_pred             ccccccccccCCcceEEEecCCCcccccC--CccCCCCCcEEeecCCccccccccc--cccCccccccEEEEecccc
Q 044585          258 KENDESNKAFANLKSLEIFECSKLQKLVP--ASWHLENLEALKVSKCHRLINLLTL--STSRSLIILQSMTIADCKR  330 (352)
Q Consensus       258 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~i~~c~~  330 (352)
                      ...+   ..+++|+.|+++++ .++.++.  .+..+++|++|++++++ ++.++..  .....+++|+.|++.++..
T Consensus        81 ~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           81 EGLD---QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SCHH---HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cchh---hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            5544   57889999999887 5677765  66788999999997774 4454331  1356678899998888753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.71  E-value=2.8e-08  Score=81.61  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=84.5

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCccee
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .++|++|++.++ .++.+|..+..+++|++|+++++.              +..++ ..+..+++|++|+++++. ++.+
T Consensus        30 ~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~--------------i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i   93 (193)
T 2wfh_A           30 PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR--------------ISTLSNQSFSNMTQLLTLILSYNR-LRCI   93 (193)
T ss_dssp             CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSC-CCBC
T ss_pred             CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc--------------CCEeCHhHccCCCCCCEEECCCCc-cCEe
Confidence            368999999998 788888888899999999999543              33333 335678999999999988 7765


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL  134 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  134 (352)
                      +... +  ..+++|++|+++++ .+...++ ..+..+++|+.|+++++..
T Consensus        94 ~~~~-f--~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           94 PPRT-F--DGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CTTT-T--TTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSCE
T ss_pred             CHHH-h--CCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCCe
Confidence            5443 3  35899999999998 5665443 4467899999999998753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.71  E-value=1.8e-10  Score=95.25  Aligned_cols=137  Identities=18%  Similarity=0.238  Sum_probs=92.3

Q ss_pred             ceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCcc
Q 044585           20 MKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLR   99 (352)
Q Consensus        20 l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~   99 (352)
                      ++.+|..+..+++|++|++++|              .+..+| .+..+++|+.|+++++. ++.++...    ..+++|+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n--------------~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~   96 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTN--------------NIEKIS-SLSGMENLRILSLGRNL-IKKIENLD----AVADTLE   96 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEE--------------EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHH----HHHHHCS
T ss_pred             HhhhhHHHhcCCCCCEEECCCC--------------CCcccc-ccccCCCCCEEECCCCC-cccccchh----hcCCcCC
Confidence            3444446778999999999943              344455 56688999999999886 66543322    3468999


Q ss_pred             EEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccccc----
Q 044585          100 QLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF----  175 (352)
Q Consensus       100 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----  175 (352)
                      +|++++| .+...+   .+..+++|++|++++|. +..++...       .+. .+++|+.|++.+++-....+..    
T Consensus        97 ~L~L~~N-~l~~l~---~~~~l~~L~~L~l~~N~-i~~~~~~~-------~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~  163 (198)
T 1ds9_A           97 ELWISYN-QIASLS---GIEKLVNLRVLYMSNNK-ITNWGEID-------KLA-ALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             EEEEEEE-ECCCHH---HHHHHHHSSEEEESEEE-CCCHHHHH-------HHT-TTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred             EEECcCC-cCCcCC---ccccCCCCCEEECCCCc-CCchhHHH-------HHh-cCCCCCEEEecCCccccccccccchH
Confidence            9999998 566543   36688999999999875 33322211       112 7899999999887532221110    


Q ss_pred             ---CCceeeccCcceEe
Q 044585          176 ---TGNIIELSELENLT  189 (352)
Q Consensus       176 ---~~~~~~~~~L~~L~  189 (352)
                         ...+..+++|+.|+
T Consensus       164 ~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          164 EYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHCSSCSEEC
T ss_pred             HHHHHHHHhCCCcEEEC
Confidence               00356789999987

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.65  E-value=1.7e-08  Score=99.69  Aligned_cols=108  Identities=16%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .+++|++|+|.+| .+..+|..++.+++|++|+|++              ..+..+|..+..+++|++|+|+++. ++.+
T Consensus       222 ~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l  285 (727)
T 4b8c_D          222 DDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG--------------NSLTELPAEIKNLSNLRVLDLSHNR-LTSL  285 (727)
T ss_dssp             CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT--------------SCCSCCCGGGGGGTTCCEEECTTSC-CSSC
T ss_pred             cCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC--------------CcCcccChhhhCCCCCCEEeCcCCc-CCcc
Confidence            4567777777776 5556666666677777777773              2334566666677778888877776 6655


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI  135 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  135 (352)
                      +...    +.+++|++|+|++| .+..+ |.. +..+++|+.|++++|...
T Consensus       286 p~~~----~~l~~L~~L~L~~N-~l~~l-p~~-~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          286 PAEL----GSCFQLKYFYFFDN-MVTTL-PWE-FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSSG----GGGTTCSEEECCSS-CCCCC-CSS-TTSCTTCCCEECTTSCCC
T ss_pred             Chhh----cCCCCCCEEECCCC-CCCcc-Chh-hhcCCCccEEeCCCCccC
Confidence            4443    45777778877776 45543 333 567777778877776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.64  E-value=8.6e-08  Score=77.36  Aligned_cols=126  Identities=14%  Similarity=0.206  Sum_probs=82.0

Q ss_pred             ccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhcee-eeccCccceeEeccCCCcceeccC
Q 044585            9 LEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEV-MIGFRDIEHLQLSHFPRLREIWHG   87 (352)
Q Consensus         9 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~   87 (352)
                      .+.+++.++ +++.+|..+  .++|++|+++++.              +..++.. +..+++|++|+++++. ++.++..
T Consensus         9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~--------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~   70 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNK--------------LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDG   70 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSC--------------CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT
T ss_pred             CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCc--------------ccEeCHHHhcCcccccEEECCCCc-ceEeChh
Confidence            456777776 677777554  4788888888432              3333332 3567888999988876 6654433


Q ss_pred             CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585           88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP  167 (352)
Q Consensus        88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  167 (352)
                      . +  ..+++|++|+++++ .+...++ ..+..+++|+.|++++|. ++.++..        .+. .+++|+.|++.+.+
T Consensus        71 ~-~--~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~~--------~~~-~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           71 V-F--DKLTKLTILYLHEN-KLQSLPN-GVFDKLTQLKELALDTNQ-LKSVPDG--------IFD-RLTSLQKIWLHTNP  135 (177)
T ss_dssp             T-T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT--------TTT-TCTTCCEEECCSSC
T ss_pred             H-c--cCCCccCEEECCCC-CccccCH-HHhhCCcccCEEECcCCc-ceEeCHH--------Hhc-CCcccCEEEecCCC
Confidence            2 2  35788899999887 5665443 335678889999998864 4443221        111 57888888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.62  E-value=1.6e-08  Score=80.83  Aligned_cols=88  Identities=6%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             CcceeecccccccccccccccccccccCCcceEEEecCCCccccc-CCccC----CCCCcEEeecCCccccccccccccC
Q 044585          241 QLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLV-PASWH----LENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       241 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~----~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      .|+.|++++|. +++.....+   ..+++|+.|++++|..+++-- ..+..    +++|++|++++|.++++.....+ .
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred             eEeEEeCcCCC-ccHHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence            78999999986 666554444   688999999999998777421 11122    35799999999999988765443 4


Q ss_pred             ccccccEEEEecccccce
Q 044585          316 SLIILQSMTIADCKRIEE  333 (352)
Q Consensus       316 ~l~~L~~L~i~~c~~l~~  333 (352)
                      .+++|++|++++|+.+++
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            689999999999998876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.57  E-value=2.9e-07  Score=74.25  Aligned_cols=107  Identities=16%  Similarity=0.116  Sum_probs=65.7

Q ss_pred             ccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccc
Q 044585          182 LSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKEN  260 (352)
Q Consensus       182 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  260 (352)
                      +++|+.|.++++ .++.+ +...+..+++|+.|+ ..+.++.+....        ++.+++|++|++++ +.++.++...
T Consensus        27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~~~~~~~   95 (177)
T 2o6r_A           27 PSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGV--------FDKLTKLTILYLHE-NKLQSLPNGV   95 (177)
T ss_dssp             CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred             CCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCcceEeChhH--------ccCCCccCEEECCC-CCccccCHHH
Confidence            368888888876 45554 333334667777776 555555443321        24566777777777 4566665554


Q ss_pred             cccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCCc
Q 044585          261 DESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKCH  303 (352)
Q Consensus       261 ~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~  303 (352)
                      +   ..+++|++|+++++ .++.++.. +..+++|++|++++++
T Consensus        96 ~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           96 F---DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             T---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             h---hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            4   45677777777776 45566543 3556777777776664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.54  E-value=9.5e-10  Score=90.83  Aligned_cols=136  Identities=21%  Similarity=0.227  Sum_probs=93.8

Q ss_pred             hhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585           56 TIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI  135 (352)
Q Consensus        56 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  135 (352)
                      .+..+|..+..+++|++|+++++. ++.++ ..    ..+++|++|++++| .+...+.  .+..+++|++|++++|. +
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~----~~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~-l  105 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-I  105 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CH----HHHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE-C
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-cc----ccCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc-C
Confidence            455566677789999999999886 76654 22    36899999999998 5665432  35667899999999974 4


Q ss_pred             ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCccccc---------chhhh
Q 044585          136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFIS---------NSVVH  206 (352)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---------~~~~~  206 (352)
                      ..++.+.           .+++|+.|+++++. +..+.... .+..+++|+.|++++++ +....|         .....
T Consensus       106 ~~l~~~~-----------~l~~L~~L~l~~N~-i~~~~~~~-~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A          106 ASLSGIE-----------KLVNLRVLYMSNNK-ITNWGEID-KLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             CCHHHHH-----------HHHHSSEEEESEEE-CCCHHHHH-HHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHH
T ss_pred             CcCCccc-----------cCCCCCEEECCCCc-CCchhHHH-HHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHH
Confidence            4443222           68899999998764 44322111 35668999999999884 332222         12345


Q ss_pred             ccCCCCCCC
Q 044585          207 VTTNNKEPQ  215 (352)
Q Consensus       207 ~~~~L~~L~  215 (352)
                      .+++|+.|+
T Consensus       172 ~l~~L~~Ld  180 (198)
T 1ds9_A          172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCSEEC
T ss_pred             hCCCcEEEC
Confidence            788888887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.52  E-value=2.2e-07  Score=74.83  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHGQ   88 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~   88 (352)
                      +.+++.++ .++.+|..+  .++|++|+++++              .+..+ |..+..+++|++|+++++. ++.++...
T Consensus        15 ~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~   76 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGI--PTDKQRLWLNNN--------------QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGV   76 (174)
T ss_dssp             SEEECCSS-CCSSCCSCC--CTTCSEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             cEEEeCCC-CCCccCCCc--CCCCcEEEeCCC--------------CccccCHHHhcCCcCCCEEECCCCC-CCccChhH
Confidence            56777776 677777665  377888888843              23333 3344567778888888775 66654432


Q ss_pred             CCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           89 AVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        89 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                       +  ..+++|++|+++++ .+...++ ..+..+++|+.|++++|.
T Consensus        77 -~--~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           77 -F--DKLTQLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             -T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred             -h--CCcchhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCCC
Confidence             2  24677888888776 4555433 335667778888887764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.52  E-value=2.2e-07  Score=74.48  Aligned_cols=102  Identities=19%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             ccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCcceeccC
Q 044585            9 LEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREIWHG   87 (352)
Q Consensus         9 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~   87 (352)
                      .+++++.++ .++.+|..+  .++|++|+++++              .+..+ |..+..+++|++|+++++. ++.++..
T Consensus        11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N--------------~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~   72 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDN--------------QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAG   72 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCC--CTTCSEEECCSS--------------CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT
T ss_pred             CCEEEeCCC-CcCccCccC--CCCCcEEEcCCC--------------cCCccChhhhcCcccCCEEECCCCC-cCccChh
Confidence            567788776 677777665  478888888843              33333 3345577788888888776 6665443


Q ss_pred             CCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           88 QAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        88 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      . +  ..+++|++|+++++ .+...++ ..+..+++|+.|+++++.
T Consensus        73 ~-f--~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           73 V-F--DKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             T-T--TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             h-c--cCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence            3 2  24778888888887 5555443 335677888888887765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.49  E-value=1.1e-07  Score=93.92  Aligned_cols=111  Identities=15%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEE
Q 044585           24 SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAV  103 (352)
Q Consensus        24 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l  103 (352)
                      +..+..+++|++|+|++              ..+..+|..++.+++|++|+|+++. ++.++...    +.+++|+.|+|
T Consensus       217 ~~~~~~l~~L~~L~Ls~--------------n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L  277 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSN--------------LQIFNISANIFKYDFLTRLYLNGNS-LTELPAEI----KNLSNLRVLDL  277 (727)
T ss_dssp             -----CCCCCCEEECTT--------------SCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGG----GGGTTCCEEEC
T ss_pred             hhhhccCCCCcEEECCC--------------CCCCCCChhhcCCCCCCEEEeeCCc-CcccChhh----hCCCCCCEEeC
Confidence            44456778888888883              2344566666678888888888876 66555433    46788888888


Q ss_pred             ecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccc
Q 044585          104 DDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLP  167 (352)
Q Consensus       104 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  167 (352)
                      ++| .+..+ |.. +..+++|++|++++|. +..++..         ++ .+++|+.|+++++.
T Consensus       278 s~N-~l~~l-p~~-~~~l~~L~~L~L~~N~-l~~lp~~---------~~-~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          278 SHN-RLTSL-PAE-LGSCFQLKYFYFFDNM-VTTLPWE---------FG-NLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTS-CCSSC-CSS-GGGGTTCSEEECCSSC-CCCCCSS---------TT-SCTTCCCEECTTSC
T ss_pred             cCC-cCCcc-Chh-hcCCCCCCEEECCCCC-CCccChh---------hh-cCCCccEEeCCCCc
Confidence            887 45543 433 5678888888888764 4444321         11 67788888887654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=6.8e-08  Score=77.20  Aligned_cols=89  Identities=15%  Similarity=0.261  Sum_probs=42.6

Q ss_pred             CccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCC----CcccCeeccccccccccc
Q 044585           97 NLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPR----FPRLNRLRLIDLPKLKRF  172 (352)
Q Consensus        97 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~  172 (352)
                      +|++|++++|. +++..... +..|++|++|++++|..+++. .+..+.        .    .++|++|++++|+++++-
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~-gL~~L~--------~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDG-CLERLS--------QLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHH-HHHHHH--------TCHHHHHHCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHH-HHHHHH--------hcccccCCCCEEEcCCCCcCCHH
Confidence            35555555553 43332221 345555555555555544431 111000        1    134555555555555432


Q ss_pred             cccCCceeeccCcceEeeccCCCCcc
Q 044585          173 CNFTGNIIELSELENLTIENCPDMET  198 (352)
Q Consensus       173 ~~~~~~~~~~~~L~~L~l~~c~~l~~  198 (352)
                      -..  .+..+++|++|.+++|+.+++
T Consensus       131 Gl~--~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GII--ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHH--HGGGCTTCCEEEEESCTTCCC
T ss_pred             HHH--HHhcCCCCCEEECCCCCCCCc
Confidence            111  233467777777777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.42  E-value=1.1e-05  Score=73.65  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS  314 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~  314 (352)
                      +..+.+|+.+.+.+  .++.+...++   ..+.+|+.+.+..  .++.+.. .+..+.+|+.+.+...  ++.+. ...+
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~-~~aF  362 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGEEAF---ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIG-ANAF  362 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEEC-TTTB
T ss_pred             cccccccccccccc--ccceechhhh---cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEeh-HHHh
Confidence            34567888888864  4777777777   6788899888864  4666643 5677889999988543  66663 3568


Q ss_pred             CccccccEEEEec
Q 044585          315 RSLIILQSMTIAD  327 (352)
Q Consensus       315 ~~l~~L~~L~i~~  327 (352)
                      ..|.+|+.+.+..
T Consensus       363 ~~C~~L~~i~lp~  375 (394)
T 4fs7_A          363 QGCINLKKVELPK  375 (394)
T ss_dssp             TTCTTCCEEEEEG
T ss_pred             hCCCCCCEEEECC
Confidence            8889999998865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.29  E-value=1.9e-06  Score=68.93  Aligned_cols=62  Identities=18%  Similarity=0.160  Sum_probs=46.3

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH  303 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  303 (352)
                      +.+++|++|++++ +.++.++...+   ..+++|++|+++++ .++.++. .+..+++|++|++++++
T Consensus        51 ~~l~~L~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           51 DRLTQLTRLDLDN-NQLTVLPAGVF---DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCTTCSEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCcccCCEEECCC-CCcCccChhhc---cCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            4567888888888 56777776665   57788888888887 5666665 36778888888887764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.26  E-value=2.5e-06  Score=68.55  Aligned_cols=62  Identities=13%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKCH  303 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~  303 (352)
                      +.+++|++|++++ +.++.++...+   ..+++|+.|+++++ .++.++.. +..+++|++|++++++
T Consensus        54 ~~l~~L~~L~Ls~-N~l~~i~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           54 DHLVNLQQLYFNS-NKLTAIPTGVF---DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             cCCcCCCEEECCC-CCCCccChhHh---CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence            4567888888888 47777776655   57788888888876 56677654 6778888888887764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.11  E-value=4.3e-05  Score=69.72  Aligned_cols=77  Identities=16%  Similarity=0.106  Sum_probs=51.7

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS  314 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~  314 (352)
                      +..+.+|+.++|..  .++.+...++   ..+.+|+.+.+..  .++.+.. .+..+++|+.+++...  ++.. . ..+
T Consensus       316 F~~c~~L~~i~lp~--~v~~I~~~aF---~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~-~~F  384 (394)
T 4fs7_A          316 FESCTSLVSIDLPY--LVEEIGKRSF---RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR--LEQY-R-YDF  384 (394)
T ss_dssp             TTTCTTCCEECCCT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG--GGGG-G-GGB
T ss_pred             hcCCCCCCEEEeCC--cccEEhHHhc---cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC--CEEh-h-hee
Confidence            34567888888864  4777777777   6788888888864  3565543 5678888998888532  3333 1 246


Q ss_pred             CccccccEE
Q 044585          315 RSLIILQSM  323 (352)
Q Consensus       315 ~~l~~L~~L  323 (352)
                      ..|++|+.+
T Consensus       385 ~~c~~L~~I  393 (394)
T 4fs7_A          385 EDTTKFKWI  393 (394)
T ss_dssp             CTTCEEEEE
T ss_pred             cCCCCCcEE
Confidence            667777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.09  E-value=1.1e-06  Score=79.26  Aligned_cols=183  Identities=14%  Similarity=0.076  Sum_probs=99.6

Q ss_pred             EeccCCCCCCCceEEEecccccCcce--eecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCcc
Q 044585           22 TFSRGISSTPKLYVVQVTEREEGEHH--WEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLR   99 (352)
Q Consensus        22 ~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~   99 (352)
                      .+..+..++++|+.|.+.........  |..      ...+...+..+|+|++|.++++..+.       ++....++|+
T Consensus       130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~------~~~L~~ll~~~P~L~~L~L~g~~~l~-------l~~~~~~~L~  196 (362)
T 2ra8_A          130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIE------QVDLSPVLDAMPLLNNLKIKGTNNLS-------IGKKPRPNLK  196 (362)
T ss_dssp             HHHTTHHHHTTCSEEEECCCCTTTCCGGGCB------CCBCHHHHHTCTTCCEEEEECCBTCB-------CCSCBCTTCS
T ss_pred             HHHHhhhhcchhhheeecCcchhhccccccc------ccCHHHHHhcCCCCcEEEEeCCCCce-------eccccCCCCc
Confidence            34444556889999998742111100  110      01233334578999999998874332       1112368999


Q ss_pred             EEEEecCCCCcccCCchhh-hcCCCCcEEEEccCCC-cceeeeeccccccccccC-CCCcccCeeccccccccccccccC
Q 044585          100 QLAVDDCTNMSSAIPTNLL-RCLNNLRCLEVRNCDL-IEEVLHLEELNAKEEHIG-PRFPRLNRLRLIDLPKLKRFCNFT  176 (352)
Q Consensus       100 ~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~  176 (352)
                      +|.+..| .+......... ..+|+|++|+++.+.. ...-..+..   ....+. ..+|+|+.|.+.+|..........
T Consensus       197 ~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~---l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          197 SLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV---FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             EEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG---TGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             EEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH---HHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            9999887 44433222211 3689999999864211 110000111   111111 158999999998765322111100


Q ss_pred             CceeeccCcceEeeccCCCCcccccchhh---hccCCCCCCC-CCCccch
Q 044585          177 GNIIELSELENLTIENCPDMETFISNSVV---HVTTNNKEPQ-KLTSEEN  222 (352)
Q Consensus       177 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~-~~~~l~~  222 (352)
                      .....+|+|+.|+++.+ .+++.....+.   .++++|+.|+ ..+.++.
T Consensus       273 a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          273 LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            01234789999999665 56653222222   3578888888 5555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=0.00025  Score=64.63  Aligned_cols=83  Identities=18%  Similarity=0.259  Sum_probs=54.6

Q ss_pred             ccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcccccccccccc
Q 044585          236 KLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTS  314 (352)
Q Consensus       236 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~  314 (352)
                      +..++.|+.+.+..  .++.++..++   ..+.+|+.+.+..  .++.+.. .+..+.+|+.+.|..  .++.+. ...+
T Consensus       284 F~~c~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~-~~aF  353 (394)
T 4gt6_A          284 FMNCPALQDIEFSS--RITELPESVF---AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIP-ESAF  353 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCC-GGGG
T ss_pred             cccccccccccCCC--cccccCceee---cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEh-HhHh
Confidence            34566777777753  5667777766   6777888887764  3555543 456777888888843  355553 3467


Q ss_pred             CccccccEEEEecc
Q 044585          315 RSLIILQSMTIADC  328 (352)
Q Consensus       315 ~~l~~L~~L~i~~c  328 (352)
                      ..|.+|+.+.+.+.
T Consensus       354 ~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          354 SNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCTTCCEEEESSC
T ss_pred             hCCCCCCEEEECCc
Confidence            77888888877654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.01  E-value=7.9e-06  Score=73.19  Aligned_cols=102  Identities=14%  Similarity=0.164  Sum_probs=69.0

Q ss_pred             EEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceeccCCC
Q 044585           11 QVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWHGQA   89 (352)
Q Consensus        11 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~   89 (352)
                      .++..+..+++.+|. +..+.+|++|+|++             +..+..++ ..+..+++|+.|+|+++. ++.++... 
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~-------------~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-   75 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIEN-------------QQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDA-   75 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCS-------------CSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTG-
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccC-------------CCCCCCcChhHhccccCCCEEECCCCc-cceeCHHH-
Confidence            345555446777888 87888899999882             13444444 345678889999998886 77655433 


Q ss_pred             CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      +  ..+++|++|+|+++ .+...++ ..+..++ |+.|++.++.
T Consensus        76 ~--~~l~~L~~L~l~~N-~l~~~~~-~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           76 F--HFTPRLSRLNLSFN-ALESLSW-KTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             G--GSCSCCCEEECCSS-CCSCCCS-TTTCSCC-CCEEECCSSC
T ss_pred             h--cCCcCCCEEeCCCC-ccceeCH-HHcccCC-ceEEEeeCCC
Confidence            2  35788889998887 5665543 3344444 8888888765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.99  E-value=5.4e-06  Score=74.66  Aligned_cols=68  Identities=18%  Similarity=0.195  Sum_probs=42.2

Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCccc-----ccCCccCCCCCcEEeecCCcccccc
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQK-----LVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      .+|+|+.|++.+|..-.... ..+.....+++|++|+++.+ .++.     ++.++..+++|+.|++++| .+++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~-~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~  322 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVV-EMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDE  322 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHH-HHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHH
T ss_pred             CCCCcCEEeCCCCCCchHHH-HHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHH
Confidence            47889999998864322111 11100125788999999765 4543     4445567889999999777 35443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.95  E-value=0.00054  Score=61.91  Aligned_cols=33  Identities=12%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             cCCccEEeccccccceEeccC-CCCCCCceEEEecc
Q 044585            6 FPSLEQVSMTHCPNMKTFSRG-ISSTPKLYVVQVTE   40 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~   40 (352)
                      ..+|+.+.+-.  +++.++.. |..|.+|+.+++..
T Consensus        45 ~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~   78 (379)
T 4h09_A           45 RDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS   78 (379)
T ss_dssp             GGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT
T ss_pred             ccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC
Confidence            45677777753  57777654 56889999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.84  E-value=6.4e-07  Score=81.25  Aligned_cols=11  Identities=18%  Similarity=0.380  Sum_probs=5.5

Q ss_pred             cCcceEeeccC
Q 044585          183 SELENLTIENC  193 (352)
Q Consensus       183 ~~L~~L~l~~c  193 (352)
                      ++|+.|++++|
T Consensus       211 ~~L~~L~Ls~N  221 (372)
T 3un9_A          211 RQLQELNVAYN  221 (372)
T ss_dssp             SCCCEEECCSS
T ss_pred             CCcCeEECCCC
Confidence            44555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.83  E-value=0.00071  Score=61.56  Aligned_cols=125  Identities=10%  Similarity=0.073  Sum_probs=76.1

Q ss_pred             eeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeecccccccccccc
Q 044585          179 IIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWK  258 (352)
Q Consensus       179 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  258 (352)
                      +..+.+|+.+.+.+  .+..+ ....+.++++|+.+.-...++.+...        .+..+.+|+.++|.+  .++.+..
T Consensus       261 F~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~~i~~I~~~--------aF~~c~~L~~i~lp~--~v~~I~~  327 (394)
T 4gt6_A          261 FDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSSRITELPES--------VFAGCISLKSIDIPE--GITQILD  327 (394)
T ss_dssp             TTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCTTCCEECTT--------TTTTCTTCCEEECCT--TCCEECT
T ss_pred             eeecccccEEeccc--cccee-cCcccccccccccccCCCcccccCce--------eecCCCCcCEEEeCC--cccEehH
Confidence            44566777777754  23333 44445567777766511223222221        145678999999975  5888888


Q ss_pred             cccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccCccccccEEEEe
Q 044585          259 ENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIA  326 (352)
Q Consensus       259 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~  326 (352)
                      .++   ..+.+|+.+.+..  .++.+.. .+..+.+|+.+++.+.....     ..+..+.+|+.+.+.
T Consensus       328 ~aF---~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          328 DAF---AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVA  386 (394)
T ss_dssp             TTT---TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC------
T ss_pred             hHh---hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeC
Confidence            888   7889999999964  3566643 56789999999997653221     123456667777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.76  E-value=6.1e-05  Score=67.34  Aligned_cols=85  Identities=15%  Similarity=0.077  Sum_probs=40.1

Q ss_pred             eeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccc
Q 044585          180 IELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWK  258 (352)
Q Consensus       180 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  258 (352)
                      ..+++|+.|+|+++..++.+ +...+.++++|+.|+ +.+.++.++...        ++.+++|+.|+|++ +.++.++.
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~~~~~   97 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDA--------FHFTPRLSRLNLSF-NALESLSW   97 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTG--------GGSCSCCCEEECCS-SCCSCCCS
T ss_pred             CCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHH--------hcCCcCCCEEeCCC-CccceeCH
Confidence            34556777777654456555 222222455555555 444444433321        23445555555555 34444444


Q ss_pred             cccccccccCCcceEEEecC
Q 044585          259 ENDESNKAFANLKSLEIFEC  278 (352)
Q Consensus       259 ~~~~~~~~~~~L~~L~l~~c  278 (352)
                      ..+   ..++ |+.|++.++
T Consensus        98 ~~~---~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           98 KTV---QGLS-LQELVLSGN  113 (347)
T ss_dssp             TTT---CSCC-CCEEECCSS
T ss_pred             HHc---ccCC-ceEEEeeCC
Confidence            333   1222 555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.76  E-value=1.3e-06  Score=79.17  Aligned_cols=174  Identities=14%  Similarity=0.035  Sum_probs=95.6

Q ss_pred             cCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCccc
Q 044585          120 CLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETF  199 (352)
Q Consensus       120 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  199 (352)
                      .++.|+.|++++|.. ...    ........+....++|+.|+++++. +....... ....+++|+.|++++| .+++.
T Consensus        70 ~~~~L~~L~Ls~n~l-~~~----~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~L~~L~Ls~n-~l~~~  141 (372)
T 3un9_A           70 VLSSLRQLNLAGVRM-TPV----KCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRT-LLPVFLRARKLGLQLN-SLGPE  141 (372)
T ss_dssp             HHTTCCEEECTTSCC-CHH----HHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHH-THHHHHTEEEEECCSS-CCCHH
T ss_pred             HHhhCCEEEecCCCC-CHH----HHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHH-HHHHHHhccHhhcCCC-CCCHH
Confidence            457899999999763 221    1111111222133689999998874 32211100 2234678999999998 55543


Q ss_pred             ccchhh----hccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccccc-cccccCCcceE
Q 044585          200 ISNSVV----HVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDE-SNKAFANLKSL  273 (352)
Q Consensus       200 ~~~~~~----~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L  273 (352)
                      ....+.    ...++|+.|+ ..+.++......-    ...+...++|++|+|+++ .+++.....++ .....++|++|
T Consensus       142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l----~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L  216 (372)
T 3un9_A          142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL----MEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQEL  216 (372)
T ss_dssp             HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH----HHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEE
T ss_pred             HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH----HHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeE
Confidence            222222    2357788888 5556654221100    000234678888888885 45443211110 00355688888


Q ss_pred             EEecCCCccc-----ccCCccCCCCCcEEeecCCcccccc
Q 044585          274 EIFECSKLQK-----LVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       274 ~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      ++++| .++.     +...+...++|++|++++|+ +++.
T Consensus       217 ~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~  254 (372)
T 3un9_A          217 NVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSE  254 (372)
T ss_dssp             ECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred             ECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence            88887 3442     32334456788888887774 4443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.23  E-value=0.00012  Score=59.17  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             CCCCCceEEEeccc-ccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCC--CCCCCccEEEEe
Q 044585           28 SSTPKLYVVQVTER-EEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPV--SFFNNLRQLAVD  104 (352)
Q Consensus        28 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~--~~l~~L~~L~l~  104 (352)
                      ...++|++|++++| .+...         ....+...+...++|++|++++|. +.+..... +..  ...++|++|+++
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~---------g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~-l~~~L~~n~~L~~L~L~  101 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVP---------TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFA-LAEMLKVNNTLKSLNVE  101 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHH---------HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHH-HHHHHHHCSSCCEEECC
T ss_pred             hcCCCCCEEEecCCCCCCHH---------HHHHHHHHHHhCCCcCEEECcCCC-CChHHHHH-HHHHHHhCCCcCEEECc
Confidence            34666666666643 22211         112222333345566666666665 43221110 100  123456666666


Q ss_pred             cCCCCcccCC---chhhhcCCCCcEEEE
Q 044585          105 DCTNMSSAIP---TNLLRCLNNLRCLEV  129 (352)
Q Consensus       105 ~c~~l~~~~~---~~~~~~l~~L~~L~l  129 (352)
                      +| .+.....   ...+...++|++|++
T Consensus       102 ~N-~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          102 SN-FISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             SS-CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CC-cCCHHHHHHHHHHHHhCCCceEEEe
Confidence            66 3433221   112344556777776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.98  E-value=0.042  Score=49.29  Aligned_cols=105  Identities=13%  Similarity=0.161  Sum_probs=59.3

Q ss_pred             CeeecCCccEEeccccccceEeccCC-CCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCC
Q 044585            2 YTLEFPSLEQVSMTHCPNMKTFSRGI-SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPR   80 (352)
Q Consensus         2 ~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~   80 (352)
                      ++..|.+|+.+.+-.  .++.++... ..+ +|+.+.+..               .+..+....+...+|+.+.+.+.  
T Consensus        64 aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~---------------~l~~I~~~aF~~~~L~~i~lp~~--  123 (379)
T 4h09_A           64 NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME---------------RVKKFGDYVFQGTDLDDFEFPGA--  123 (379)
T ss_dssp             TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT---------------TCCEECTTTTTTCCCSEEECCTT--
T ss_pred             HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc---------------eeeEeccceeccCCcccccCCCc--
Confidence            445688999999954  477776554 455 677776652               22333333333457888887643  


Q ss_pred             cceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           81 LREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        81 l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                      +..+.... +.   -.+|+.+.+..  .+..... ..+..+.+++.+.+....
T Consensus       124 ~~~i~~~~-F~---~~~l~~~~~~~--~v~~i~~-~~f~~~~~l~~~~~~~~~  169 (379)
T 4h09_A          124 TTEIGNYI-FY---NSSVKRIVIPK--SVTTIKD-GIGYKAENLEKIEVSSNN  169 (379)
T ss_dssp             CCEECTTT-TT---TCCCCEEEECT--TCCEECS-CTTTTCTTCCEEEECTTC
T ss_pred             cccccccc-cc---cceeeeeeccc--eeecccc-chhccccccccccccccc
Confidence            33333332 21   13566666654  3343332 225567788888776543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.41  E-value=0.0024  Score=54.54  Aligned_cols=93  Identities=19%  Similarity=0.163  Sum_probs=53.6

Q ss_pred             eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccc
Q 044585           65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL  144 (352)
Q Consensus        65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  144 (352)
                      .++++|++|+|+++. ++.+..-..+. ..+++|+.|+|+++ .+........+..+ +|++|++++|+....++...  
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~-~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~--  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMSSIV-QKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQS--  240 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGTTHH-HHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHH--
T ss_pred             hhCCCCCEEECCCCC-CCCCccchhHH-hhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcch--
Confidence            367889999988877 65532210000 25788999999887 55554322323333 88999998877543221100  


Q ss_pred             cccccccCCCCcccCeeccc
Q 044585          145 NAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus       145 ~~~~~~~~~~~~~L~~L~l~  164 (352)
                      ......+. .+|+|+.|+-.
T Consensus       241 ~y~~~il~-~~P~L~~LDg~  259 (267)
T 3rw6_A          241 TYISAIRE-RFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHH-HCTTCCEESSC
T ss_pred             hHHHHHHH-HCcccCeECCc
Confidence            00011222 78888888754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.04  E-value=0.0017  Score=52.26  Aligned_cols=12  Identities=25%  Similarity=0.454  Sum_probs=6.7

Q ss_pred             ccCcceEeeccC
Q 044585          182 LSELENLTIENC  193 (352)
Q Consensus       182 ~~~L~~L~l~~c  193 (352)
                      .++|++|++++|
T Consensus        35 ~~~L~~L~L~~n   46 (185)
T 1io0_A           35 DPDLEEVNLNNI   46 (185)
T ss_dssp             CTTCCEEECTTC
T ss_pred             CCCCCEEEecCC
Confidence            455555555555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.75  E-value=0.0063  Score=51.96  Aligned_cols=81  Identities=19%  Similarity=0.140  Sum_probs=49.0

Q ss_pred             ccCCcceeecccccccccccc--cccccccccCCcceEEEecCCCcccccCCccCCC--CCcEEeecCCccccccc----
Q 044585          238 TFPQLKELKLSRLHKVQHLWK--ENDESNKAFANLKSLEIFECSKLQKLVPASWHLE--NLEALKVSKCHRLINLL----  309 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~--~L~~L~l~~c~~l~~~~----  309 (352)
                      .+|+|+.|+|++ +.++.+..  ..+   ..+++|+.|+++++ .++.+. .+..+.  +|++|++.+++--...+    
T Consensus       168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~---~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          168 NIPELLSLNLSN-NRLYRLDDMSSIV---QKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HCTTCCEEECTT-SCCCCCGGGTTHH---HHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred             hCCCCCEEECCC-CCCCCCccchhHH---hhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchh
Confidence            467888888888 56665542  111   46788888888876 455442 223333  88888888776433221    


Q ss_pred             -cccccCccccccEEE
Q 044585          310 -TLSTSRSLIILQSMT  324 (352)
Q Consensus       310 -~~~~~~~l~~L~~L~  324 (352)
                       ...+...+++|+.|+
T Consensus       242 y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          242 YISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHCTTCCEES
T ss_pred             HHHHHHHHCcccCeEC
Confidence             112445667777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=85.86  E-value=1.2  Score=33.16  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=26.1

Q ss_pred             CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585           95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL  134 (352)
Q Consensus        95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  134 (352)
                      .++|++|+|+++ .+..+. ...+..+++|+.|+|.+|..
T Consensus        30 p~~l~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           30 PVDTTELVLTGN-NLTALP-PGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CTTCSEEECTTS-CCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCEEECCCC-cCCccC-hhhhhhccccCEEEecCCCe
Confidence            346888888886 555543 34467778888888887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=83.31  E-value=1  Score=33.40  Aligned_cols=36  Identities=17%  Similarity=0.098  Sum_probs=25.9

Q ss_pred             CCcceeecccccccccccccccccccccCCcceEEEecCC
Q 044585          240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECS  279 (352)
Q Consensus       240 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~  279 (352)
                      ++|+.|+|++ +.++.++...+   ..+++|+.|++.+++
T Consensus        31 ~~l~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           31 VDTTELVLTG-NNLTALPPGLL---DALPALRTAHLGANP   66 (130)
T ss_dssp             TTCSEEECTT-SCCSSCCTTTG---GGCTTCCEEECCSSC
T ss_pred             cCCCEEECCC-CcCCccChhhh---hhccccCEEEecCCC
Confidence            4678888877 57777777666   567777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.68  E-value=0.29  Score=39.45  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=30.3

Q ss_pred             ccCccceeEeccCCCcceeccCCCCCC--CCCCCccEEEEecCCCCcccCCchh---hhcCCCCcEEEEccC
Q 044585           66 GFRDIEHLQLSHFPRLREIWHGQAVPV--SFFNNLRQLAVDDCTNMSSAIPTNL---LRCLNNLRCLEVRNC  132 (352)
Q Consensus        66 ~~~~L~~L~l~~~~~l~~~~~~~~l~~--~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~~  132 (352)
                      .-..|++|+|++|. +.+..... ++.  ..-+.|++|+|+++ .+.......+   +..-++|++|+++++
T Consensus        68 ~N~~L~~L~L~~n~-igd~ga~a-lA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           68 NSKHIEKFSLANTA-ISDSEARG-LIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TCSCCCEEECTTSC-CBHHHHTT-HHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hCCCcCEEEccCCC-CChHHHHH-HHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            44566777776665 44322221 111  01245677777665 3443221111   233345777777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.48
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.41
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.19
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.03
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.86
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.58
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.0

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.3e-16  Score=143.81  Aligned_cols=78  Identities=9%  Similarity=0.195  Sum_probs=54.9

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      +.+|++|++.++ +++++ .++..+++|++|+++++              .+..++. +..+++|++|+++++. +..++
T Consensus        43 l~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N--------------~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~  104 (384)
T d2omza2          43 LDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNN--------------QLTDITP-LKNLTKLVDILMNNNQ-IADIT  104 (384)
T ss_dssp             HTTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSS--------------CCCCCGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred             hCCCCEEECCCC-CCCCc-cccccCCCCCEEeCcCC--------------cCCCCcc-ccCCcccccccccccc-ccccc
Confidence            678899999888 67766 45677899999999954              3344442 5577888888888876 55433


Q ss_pred             cCCCCCCCCCCCccEEEEecC
Q 044585           86 HGQAVPVSFFNNLRQLAVDDC  106 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c  106 (352)
                      . .    +.+++|+.|++.++
T Consensus       105 ~-l----~~l~~L~~L~~~~~  120 (384)
T d2omza2         105 P-L----ANLTNLTGLTLFNN  120 (384)
T ss_dssp             G-G----TTCTTCCEEECCSS
T ss_pred             c-c----cccccccccccccc
Confidence            2 1    35778888887765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=2.2e-15  Score=131.60  Aligned_cols=256  Identities=12%  Similarity=0.125  Sum_probs=152.7

Q ss_pred             cceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCCCCCCCCCCC
Q 044585           19 NMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNN   97 (352)
Q Consensus        19 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~   97 (352)
                      +++++|..+  .+++++|+++++              .+.++|. .+..+++|++|+++++. +..+.... +  ..+++
T Consensus        21 ~L~~lP~~l--~~~l~~L~Ls~N--------------~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~-f--~~l~~   80 (305)
T d1xkua_          21 GLEKVPKDL--PPDTALLDLQNN--------------KITEIKDGDFKNLKNLHTLILINNK-ISKISPGA-F--APLVK   80 (305)
T ss_dssp             CCCSCCCSC--CTTCCEEECCSS--------------CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTT-T--TTCTT
T ss_pred             CCCccCCCC--CCCCCEEECcCC--------------cCCCcChhHhhcccccccccccccc-ccccchhh-h--hCCCc
Confidence            467777765  367888888843              4445553 34567788888888776 44443222 2  35777


Q ss_pred             ccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCC
Q 044585           98 LRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG  177 (352)
Q Consensus        98 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  177 (352)
                      |++|++++| .+...+. .   ..+.++.|.+.++. +..+....        .. ....+..+.............. .
T Consensus        81 L~~L~l~~n-~l~~l~~-~---~~~~l~~L~~~~n~-l~~l~~~~--------~~-~~~~~~~l~~~~n~~~~~~~~~-~  144 (305)
T d1xkua_          81 LERLYLSKN-QLKELPE-K---MPKTLQELRVHENE-ITKVRKSV--------FN-GLNQMIVVELGTNPLKSSGIEN-G  144 (305)
T ss_dssp             CCEEECCSS-CCSBCCS-S---CCTTCCEEECCSSC-CCBBCHHH--------HT-TCTTCCEEECCSSCCCGGGBCT-T
T ss_pred             cCEecccCC-ccCcCcc-c---hhhhhhhhhccccc-hhhhhhhh--------hh-ccccccccccccccccccCCCc-c
Confidence            888888877 4555432 2   34567777776643 22221100        00 2333444444332211111111 1


Q ss_pred             ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccc
Q 044585          178 NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHL  256 (352)
Q Consensus       178 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  256 (352)
                      .+..+++|+.+.+.++ .+..+ +..+   +++|++|+ ..+.........        +..++.++.|+++++ .++.+
T Consensus       145 ~~~~l~~L~~l~l~~n-~l~~l-~~~~---~~~L~~L~l~~n~~~~~~~~~--------~~~~~~l~~L~~s~n-~l~~~  210 (305)
T d1xkua_         145 AFQGMKKLSYIRIADT-NITTI-PQGL---PPSLTELHLDGNKITKVDAAS--------LKGLNNLAKLGLSFN-SISAV  210 (305)
T ss_dssp             GGGGCTTCCEEECCSS-CCCSC-CSSC---CTTCSEEECTTSCCCEECTGG--------GTTCTTCCEEECCSS-CCCEE
T ss_pred             ccccccccCccccccC-Ccccc-Cccc---CCccCEEECCCCcCCCCChhH--------hhccccccccccccc-ccccc
Confidence            3455667777777776 34333 3332   36677776 443333322221        345678888888884 67777


Q ss_pred             cccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccc-----cccCccccccEEEEeccc
Q 044585          257 WKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTL-----STSRSLIILQSMTIADCK  329 (352)
Q Consensus       257 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~l~~L~~L~i~~c~  329 (352)
                      +...+   ..+++|++|++++| +++.+|.++..+++|++|+++++ ++++++..     +......+|+.|++.++|
T Consensus       211 ~~~~~---~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         211 DNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccc---cccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            66665   67889999999988 67888888888899999999876 57766321     233456778889998876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=7.1e-16  Score=135.27  Aligned_cols=85  Identities=18%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccc-ccccccccC
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLI-NLLTLSTSR  315 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~  315 (352)
                      +.+++++.+++.++..-..++ . +   ..+++|+.|+++++.-...+|..+..+++|++|+++++ +++ .+|.   ..
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~~-~-~---~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~---~~  288 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDLG-K-V---GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ---GG  288 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGG-G-C---CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC---ST
T ss_pred             ccccccccccccccccccccc-c-c---ccccccccccCccCeecccCChHHhCCCCCCEEECcCC-cccccCCC---cc
Confidence            345666777666643322222 1 1   35566777777766322256666666777777777655 344 3332   23


Q ss_pred             ccccccEEEEecccc
Q 044585          316 SLIILQSMTIADCKR  330 (352)
Q Consensus       316 ~l~~L~~L~i~~c~~  330 (352)
                      .+.+|+.+++.+.+.
T Consensus       289 ~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         289 NLQRFDVSAYANNKC  303 (313)
T ss_dssp             TGGGSCGGGTCSSSE
T ss_pred             cCCCCCHHHhCCCcc
Confidence            455566666555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.9e-16  Score=137.06  Aligned_cols=213  Identities=16%  Similarity=0.179  Sum_probs=125.6

Q ss_pred             CCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccc
Q 044585           95 FNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCN  174 (352)
Q Consensus        95 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  174 (352)
                      ..+|++|++++| .+........+.+|++|++|.+++|..-....  .       .++ .+++|++|++++|..+++...
T Consensus        45 ~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~--~-------~l~-~~~~L~~L~Ls~c~~itd~~l  113 (284)
T d2astb2          45 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV--N-------TLA-KNSNLVRLNLSGCSGFSEFAL  113 (284)
T ss_dssp             CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHH--H-------HHT-TCTTCSEEECTTCBSCCHHHH
T ss_pred             CCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHH--H-------HHh-cCCCCcCcccccccccccccc
Confidence            456777777776 34333333445677777777777774221110  0       111 567777777777776653211


Q ss_pred             cCCceeeccCcceEeeccCCCCcccc-cchhhhccCCCCCCC--CC-CccchhhhhcccCCCCCcccccCCcceeecccc
Q 044585          175 FTGNIIELSELENLTIENCPDMETFI-SNSVVHVTTNNKEPQ--KL-TSEENFLLAHQVQPLFDEKLTFPQLKELKLSRL  250 (352)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~--~~-~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  250 (352)
                      .. ....+++|++|++++|..+++.. .......+++|+.|.  .| ..++......-       ...+|+|++|++++|
T Consensus       114 ~~-l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-------~~~~~~L~~L~L~~~  185 (284)
T d2astb2         114 QT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-------VRRCPNLVHLDLSDS  185 (284)
T ss_dssp             HH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-------HHHCTTCSEEECTTC
T ss_pred             ch-hhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccc-------ccccccccccccccc
Confidence            10 23456778888888777665431 122333456777776  33 23332211110       234688999999988


Q ss_pred             cccccccccccccccccCCcceEEEecCCCcccc-cCCccCCCCCcEEeecCCccccccccccccCccccccEEEEeccc
Q 044585          251 HKVQHLWKENDESNKAFANLKSLEIFECSKLQKL-VPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCK  329 (352)
Q Consensus       251 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  329 (352)
                      ..+++.....+   ..+++|++|++++|..+++- ...+..+++|++|++++|  +.+.....+...+++|+.    +|.
T Consensus       186 ~~itd~~~~~l---~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i----~~~  256 (284)
T d2astb2         186 VMLKNDCFQEF---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI----NCS  256 (284)
T ss_dssp             TTCCGGGGGGG---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE----SCC
T ss_pred             cCCCchhhhhh---cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCccccc----cCc
Confidence            88776554444   57889999999998877642 234567889999999888  333322334455666653    566


Q ss_pred             ccceec
Q 044585          330 RIEEII  335 (352)
Q Consensus       330 ~l~~~~  335 (352)
                      .++.+.
T Consensus       257 ~ls~~~  262 (284)
T d2astb2         257 HFTTIA  262 (284)
T ss_dssp             CSCCTT
T ss_pred             cCCCCC
Confidence            665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=136.36  Aligned_cols=168  Identities=17%  Similarity=0.176  Sum_probs=81.1

Q ss_pred             eeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeecc
Q 044585           64 MIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEE  143 (352)
Q Consensus        64 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  143 (352)
                      +..+++|++|++++|. +.+..... +  ..+++|++|++++|..+++......+..+++|++|++++|..+.+.. .. 
T Consensus        67 ~~~c~~L~~L~L~~~~-l~~~~~~~-l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~-~~-  140 (284)
T d2astb2          67 LSQCSKLQNLSLEGLR-LSDPIVNT-L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQ-  140 (284)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHH-H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HH-
T ss_pred             HHhCCCcccccccccC-CCcHHHHH-H--hcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc-ch-
Confidence            3455666666666664 33211111 1  13556666666666555443222334456666666666665443210 00 


Q ss_pred             ccccccccCCCCcccCeecccccc-ccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccch
Q 044585          144 LNAKEEHIGPRFPRLNRLRLIDLP-KLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEEN  222 (352)
Q Consensus       144 ~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~  222 (352)
                           ..+....++|+.|++.+|. .+.+..... ....+|+|++|++++|..+++.....                   
T Consensus       141 -----~~~~~~~~~L~~L~l~~~~~~i~~~~l~~-l~~~~~~L~~L~L~~~~~itd~~~~~-------------------  195 (284)
T d2astb2         141 -----VAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQE-------------------  195 (284)
T ss_dssp             -----HHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGG-------------------
T ss_pred             -----hhhcccccccchhhhcccccccccccccc-cccccccccccccccccCCCchhhhh-------------------
Confidence                 0000023455666655542 222110000 12234555666655555554321211                   


Q ss_pred             hhhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecC
Q 044585          223 FLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFEC  278 (352)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c  278 (352)
                                   ++.+++|++|++++|+.+++.....+   ..+++|+.|++++|
T Consensus       196 -------------l~~~~~L~~L~L~~C~~i~~~~l~~L---~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 -------------FFQLNYLQHLSLSRCYDIIPETLLEL---GEIPTLKTLQVFGI  235 (284)
T ss_dssp             -------------GGGCTTCCEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTS
T ss_pred             -------------hcccCcCCEEECCCCCCCChHHHHHH---hcCCCCCEEeeeCC
Confidence                         23456777777777766655443333   45677777777776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=2.5e-14  Score=124.79  Aligned_cols=243  Identities=13%  Similarity=0.137  Sum_probs=169.1

Q ss_pred             CCccEEeccccccceEecc-CCCCCCCceEEEecccccCcceeecCccchhhhhh-ceeeeccCccceeEeccCCCccee
Q 044585            7 PSLEQVSMTHCPNMKTFSR-GISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKC-YEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      +++++|++++| +++.++. .|..+++|++|+++++.              +..+ |..+..+++|++|+++++. ++.+
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~--------------~~~i~~~~f~~l~~L~~L~l~~n~-l~~l   94 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK--------------ISKISPGAFAPLVKLERLYLSKNQ-LKEL   94 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC--------------CCCBCTTTTTTCTTCCEEECCSSC-CSBC
T ss_pred             CCCCEEECcCC-cCCCcChhHhhcccccccccccccc--------------ccccchhhhhCCCccCEecccCCc-cCcC
Confidence            78999999998 8998886 57889999999999542              3333 3445688999999999987 7764


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      +.      ...+.+++|.+.++ .+....+ ..+.....+..+....+......       .....+. .+++|+.+.+.
T Consensus        95 ~~------~~~~~l~~L~~~~n-~l~~l~~-~~~~~~~~~~~l~~~~n~~~~~~-------~~~~~~~-~l~~L~~l~l~  158 (305)
T d1xkua_          95 PE------KMPKTLQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTNPLKSSG-------IENGAFQ-GMKKLSYIRIA  158 (305)
T ss_dssp             CS------SCCTTCCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSSCCCGGG-------BCTTGGG-GCTTCCEEECC
T ss_pred             cc------chhhhhhhhhcccc-chhhhhh-hhhhccccccccccccccccccC-------CCccccc-cccccCccccc
Confidence            43      34678999999886 4444433 33556677777777665432111       0111122 56788888887


Q ss_pred             cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcc
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLK  243 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~  243 (352)
                      ++. +..++.     ..+++|++|++.++... ...+.. +..++.++.|. +.+.++.+....        +..+++|+
T Consensus       159 ~n~-l~~l~~-----~~~~~L~~L~l~~n~~~-~~~~~~-~~~~~~l~~L~~s~n~l~~~~~~~--------~~~l~~L~  222 (305)
T d1xkua_         159 DTN-ITTIPQ-----GLPPSLTELHLDGNKIT-KVDAAS-LKGLNNLAKLGLSFNSISAVDNGS--------LANTPHLR  222 (305)
T ss_dssp             SSC-CCSCCS-----SCCTTCSEEECTTSCCC-EECTGG-GTTCTTCCEEECCSSCCCEECTTT--------GGGSTTCC
T ss_pred             cCC-ccccCc-----ccCCccCEEECCCCcCC-CCChhH-hhcccccccccccccccccccccc--------ccccccce
Confidence            764 333322     23689999999987543 332433 44778888887 666666654432        45689999


Q ss_pred             eeecccccccccccccccccccccCCcceEEEecCCCcccccC-------CccCCCCCcEEeecCCc
Q 044585          244 ELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-------ASWHLENLEALKVSKCH  303 (352)
Q Consensus       244 ~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-------~~~~~~~L~~L~l~~c~  303 (352)
                      +|+++++ .++.++.. +   ..+++|+.|+++++ +++.++.       .....++|+.|++.+++
T Consensus       223 ~L~L~~N-~L~~lp~~-l---~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         223 ELHLNNN-KLVKVPGG-L---ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EEECCSS-CCSSCCTT-T---TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             eeecccc-cccccccc-c---ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            9999995 78888753 4   57899999999997 6777653       23356899999998886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.4e-14  Score=130.18  Aligned_cols=259  Identities=14%  Similarity=0.203  Sum_probs=176.1

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      .|++|++|++.+| .+++++. +..+++|++|++++|.+....              . +..+++|+.|+++++. ++..
T Consensus        64 ~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~i~~i~--------------~-l~~l~~L~~L~~~~~~-~~~~  125 (384)
T d2omza2          64 YLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADIT--------------P-LANLTNLTGLTLFNNQ-ITDI  125 (384)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG--------------G-GTTCTTCCEEECCSSC-CCCC
T ss_pred             cCCCCCEEeCcCC-cCCCCcc-ccCCccccccccccccccccc--------------c-cccccccccccccccc-cccc
Confidence            5899999999998 7888875 788999999999976544322              1 2344555555544332 1100


Q ss_pred             c------------------------------------------------------------cCCCCCCCCCCCccEEEEe
Q 044585           85 W------------------------------------------------------------HGQAVPVSFFNNLRQLAVD  104 (352)
Q Consensus        85 ~------------------------------------------------------------~~~~l~~~~l~~L~~L~l~  104 (352)
                      +                                                            .........+++++.+.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~  205 (384)
T d2omza2         126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT  205 (384)
T ss_dssp             GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeecc
Confidence            0                                                            0000011356889999999


Q ss_pred             cCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccC
Q 044585          105 DCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSE  184 (352)
Q Consensus       105 ~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  184 (352)
                      ++ .+....+.   ..+++|++|++++|. ++.++.+.           .+++|+.+++.++. +..+.    .+..+++
T Consensus       206 ~n-~i~~~~~~---~~~~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~l~~n~-l~~~~----~~~~~~~  264 (384)
T d2omza2         206 NN-QISDITPL---GILTNLDELSLNGNQ-LKDIGTLA-----------SLTNLTDLDLANNQ-ISNLA----PLSGLTK  264 (384)
T ss_dssp             SS-CCCCCGGG---GGCTTCCEEECCSSC-CCCCGGGG-----------GCTTCSEEECCSSC-CCCCG----GGTTCTT
T ss_pred             CC-ccCCCCcc---cccCCCCEEECCCCC-CCCcchhh-----------cccccchhccccCc-cCCCC----ccccccc
Confidence            87 55555443   467899999999874 44432222           68899999998874 44432    2456789


Q ss_pred             cceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeeccccccccccccccccc
Q 044585          185 LENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDES  263 (352)
Q Consensus       185 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~  263 (352)
                      |+.|+++++ .++.+.+   ...++.++.+. ..+.++.+.          .+..+++++.|+++++ .++.++.  +  
T Consensus       265 L~~L~l~~~-~l~~~~~---~~~~~~l~~l~~~~n~l~~~~----------~~~~~~~l~~L~ls~n-~l~~l~~--l--  325 (384)
T d2omza2         265 LTELKLGAN-QISNISP---LAGLTALTNLELNENQLEDIS----------PISNLKNLTYLTLYFN-NISDISP--V--  325 (384)
T ss_dssp             CSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCCSCCG----------GGGGCTTCSEEECCSS-CCSCCGG--G--
T ss_pred             CCEeeccCc-ccCCCCc---ccccccccccccccccccccc----------ccchhcccCeEECCCC-CCCCCcc--c--
Confidence            999999887 4444322   22556666666 444444322          2356789999999985 6676643  3  


Q ss_pred             ccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEecc
Q 044585          264 NKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADC  328 (352)
Q Consensus       264 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c  328 (352)
                       ..+++|+.|++++| .++.++ .+..+++|++|++++| +++++++   ..++++|+.|++++.
T Consensus       326 -~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 -SSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCCE
T ss_pred             -ccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCCC
Confidence             58899999999998 677776 5688999999999666 7788754   567889999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.4e-14  Score=122.33  Aligned_cols=175  Identities=14%  Similarity=0.063  Sum_probs=110.5

Q ss_pred             CCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccccc
Q 044585           96 NNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF  175 (352)
Q Consensus        96 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  175 (352)
                      +++++|+++++ .+...++ ..+..+++|++|++++| .++.++...           .+++|+.|+++++. ++..+. 
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~-~~f~~l~~L~~L~L~~N-~l~~l~~~~-----------~l~~L~~L~Ls~N~-l~~~~~-   94 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRA-ELTKLQVDG-----------TLPVLGTLDLSHNQ-LQSLPL-   94 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTS-CCCEEECCS-----------CCTTCCEEECCSSC-CSSCCC-
T ss_pred             cCCCEEECcCC-cCCCcCH-HHhhccccccccccccc-ccccccccc-----------cccccccccccccc-cccccc-
Confidence            45667777665 4444332 33556677777777665 344443222           56677777776653 333222 


Q ss_pred             CCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccc
Q 044585          176 TGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQ  254 (352)
Q Consensus       176 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  254 (352)
                        .+..+++|+.|+++++. +..+ +......+.+++.|. ..+.++.+....        +..+++++.+++++ +.++
T Consensus        95 --~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~l~~L~l~~n~l~~l~~~~--------~~~l~~l~~l~l~~-N~l~  161 (266)
T d1p9ag_          95 --LGQTLPALTVLDVSFNR-LTSL-PLGALRGLGELQELYLKGNELKTLPPGL--------LTPTPKLEKLSLAN-NNLT  161 (266)
T ss_dssp             --CTTTCTTCCEEECCSSC-CCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECTT-SCCS
T ss_pred             --ccccccccccccccccc-ccee-eccccccccccccccccccccceecccc--------ccccccchhccccc-cccc
Confidence              34456677777776663 3333 333333556666666 555555443322        24567899999988 5777


Q ss_pred             cccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCc
Q 044585          255 HLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCH  303 (352)
Q Consensus       255 ~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~  303 (352)
                      .++...+   ..+++|++|+++++ .++.+|.++..+++|+.|++.+++
T Consensus       162 ~~~~~~~---~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         162 ELPAGLL---NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccCcccc---ccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            7777666   67889999999987 578888888888899999997754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=7.6e-15  Score=128.60  Aligned_cols=251  Identities=13%  Similarity=0.082  Sum_probs=151.5

Q ss_pred             CccEEeccccccce---EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            8 SLEQVSMTHCPNMK---TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         8 ~L~~L~l~~~~~l~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      +++.|++.++ .+.   .+|..++.+++|++|+++++            |.-.+.+|..++++++|++|+++++. +...
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~------------N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~  116 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGI------------NNLVGPIPPAIAKLTQLHYLYITHTN-VSGA  116 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEE------------TTEESCCCGGGGGCTTCSEEEEEEEC-CEEE
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccc------------cccccccccccccccccchhhhcccc-cccc
Confidence            4777888887 333   57777888888888888732            33344678888888888888888876 5443


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCccc-Ceecc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRL-NRLRL  163 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L-~~L~l  163 (352)
                      .... +  ..+++|+.+++.++. .....|.. +..++.|+.++++++.....++....          .+.++ +.+.+
T Consensus       117 ~~~~-~--~~~~~L~~l~l~~N~-~~~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~~~----------~l~~l~~~l~~  181 (313)
T d1ogqa_         117 IPDF-L--SQIKTLVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYG----------SFSKLFTSMTI  181 (313)
T ss_dssp             CCGG-G--GGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGG----------CCCTTCCEEEC
T ss_pred             cccc-c--cchhhhccccccccc-ccccCchh-hccCcccceeeccccccccccccccc----------ccccccccccc
Confidence            3221 1  346778888888763 33333433 66788888888887654433322111          34443 45555


Q ss_pred             ccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCc
Q 044585          164 IDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQL  242 (352)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L  242 (352)
                      .+. ++......  .+.. .....+.+..+... ...|... ..+++++.++ ....+...+..         ++.+++|
T Consensus       182 ~~n-~l~~~~~~--~~~~-l~~~~l~l~~~~~~-~~~~~~~-~~~~~l~~l~~~~~~l~~~~~~---------~~~~~~L  246 (313)
T d1ogqa_         182 SRN-RLTGKIPP--TFAN-LNLAFVDLSRNMLE-GDASVLF-GSDKNTQKIHLAKNSLAFDLGK---------VGLSKNL  246 (313)
T ss_dssp             CSS-EEEEECCG--GGGG-CCCSEEECCSSEEE-ECCGGGC-CTTSCCSEEECCSSEECCBGGG---------CCCCTTC
T ss_pred             ccc-cccccccc--cccc-cccccccccccccc-ccccccc-cccccccccccccccccccccc---------ccccccc
Confidence            443 23322111  1122 23345666555322 2223333 2567777776 44444433322         3557889


Q ss_pred             ceeecccccccccccccccccccccCCcceEEEecCCCcc-cccCCccCCCCCcEEeecCCcccccc
Q 044585          243 KELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQ-KLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       243 ~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      +.|+++++.--..+|.. +   ..+++|++|+++++ +++ .+|. +..+++|+.+++.+++.+...
T Consensus       247 ~~L~Ls~N~l~g~iP~~-l---~~L~~L~~L~Ls~N-~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         247 NGLDLRNNRIYGTLPQG-L---TQLKFLHSLNVSFN-NLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CEEECCSSCCEECCCGG-G---GGCTTCCEEECCSS-EEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccccCccCeecccCChH-H---hCCCCCCEEECcCC-cccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            99999885333356544 3   57888999999887 455 5664 467888888888888777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.3e-13  Score=116.28  Aligned_cols=84  Identities=19%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcc
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSL  317 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  317 (352)
                      .+++|+.|+++++ .++.++...+   ..+++|+.+.+.++......|..+..+++|++|+++++ .+..+++ ..+..+
T Consensus       151 ~~~~L~~L~l~~N-~l~~l~~~~f---~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~-~~~~~~  224 (284)
T d1ozna_         151 DLGNLTHLFLHGN-RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT-EALAPL  224 (284)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTC
T ss_pred             cccchhhcccccC-cccccchhhh---ccccccchhhhhhccccccChhHhhhhhhccccccccc-ccccccc-cccccc
Confidence            3455556665552 4555554444   45555666665555322222344555556666666444 2333322 234445


Q ss_pred             ccccEEEEec
Q 044585          318 IILQSMTIAD  327 (352)
Q Consensus       318 ~~L~~L~i~~  327 (352)
                      ++|++|++.+
T Consensus       225 ~~L~~L~l~~  234 (284)
T d1ozna_         225 RALQYLRLND  234 (284)
T ss_dssp             TTCCEEECCS
T ss_pred             cccCEEEecC
Confidence            5566665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.6e-13  Score=117.07  Aligned_cols=195  Identities=15%  Similarity=0.114  Sum_probs=108.9

Q ss_pred             CccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhc-eeeeccCccceeEeccCCCcceecc
Q 044585            8 SLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCY-EVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      .+.+++..+. +++.+|..+  .+++++|+|+++              .+..++ ..+..+++|++|+++++. ++.++.
T Consensus        11 ~~~~v~C~~~-~L~~iP~~l--p~~l~~L~Ls~N--------------~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~   72 (266)
T d1p9ag_          11 SHLEVNCDKR-NLTALPPDL--PKDTTILHLSEN--------------LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV   72 (266)
T ss_dssp             TCCEEECTTS-CCSSCCSCC--CTTCCEEECTTS--------------CCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC
T ss_pred             CCeEEEccCC-CCCeeCcCc--CcCCCEEECcCC--------------cCCCcCHHHhhcccccccccccccc-cccccc
Confidence            3444455444 677777765  367888888843              333444 234567788888888775 666543


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      .     +.+++|++|++++| .+.....  .+..+++|+.|+++++...+.. .        .... .+++++.|.+.++
T Consensus        73 ~-----~~l~~L~~L~Ls~N-~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~--------~~~~-~l~~l~~L~l~~n  134 (266)
T d1p9ag_          73 D-----GTLPVLGTLDLSHN-QLQSLPL--LGQTLPALTVLDVSFNRLTSLP-L--------GALR-GLGELQELYLKGN  134 (266)
T ss_dssp             C-----SCCTTCCEEECCSS-CCSSCCC--CTTTCTTCCEEECCSSCCCCCC-S--------STTT-TCTTCCEEECTTS
T ss_pred             c-----cccccccccccccc-ccccccc--ccccccccccccccccccceee-c--------cccc-ccccccccccccc
Confidence            3     25777888888877 4444332  2456777777777765432211 0        0001 3445555555443


Q ss_pred             cccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceee
Q 044585          167 PKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELK  246 (352)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~  246 (352)
                      . +..+...  ....+++|+.+.++++                         +++.+....        ++.+++|++|+
T Consensus       135 ~-l~~l~~~--~~~~l~~l~~l~l~~N-------------------------~l~~~~~~~--------~~~l~~L~~L~  178 (266)
T d1p9ag_         135 E-LKTLPPG--LLTPTPKLEKLSLANN-------------------------NLTELPAGL--------LNGLENLDTLL  178 (266)
T ss_dssp             C-CCCCCTT--TTTTCTTCCEEECTTS-------------------------CCSCCCTTT--------TTTCTTCCEEE
T ss_pred             c-cceeccc--cccccccchhcccccc-------------------------cccccCccc--------cccccccceee
Confidence            2 2222111  1233445555555444                         333332221        24467888888


Q ss_pred             cccccccccccccccccccccCCcceEEEecCC
Q 044585          247 LSRLHKVQHLWKENDESNKAFANLKSLEIFECS  279 (352)
Q Consensus       247 l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~  279 (352)
                      |++ +.++.++...+    .+++|+.|++++++
T Consensus       179 Ls~-N~L~~lp~~~~----~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         179 LQE-NSLYTIPKGFF----GSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCS-SCCCCCCTTTT----TTCCCSEEECCSCC
T ss_pred             ccc-CCCcccChhHC----CCCCCCEEEecCCC
Confidence            887 46777776654    67778888887653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.2e-12  Score=108.16  Aligned_cols=207  Identities=14%  Similarity=0.128  Sum_probs=110.2

Q ss_pred             CCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccccc
Q 044585           96 NNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNF  175 (352)
Q Consensus        96 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  175 (352)
                      +++++|+++++ .+...++ ..+.++++|++|+++++...+.++. ..       +. .+++++.+.+..+.++..+...
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~-~~-------f~-~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEA-DV-------FS-NLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SCCSEEEEESC-CCCEECT-TTTTTCTTCCEEEEESCTTCCEECS-SS-------EE-SCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCCEEECcCC-cCCccCh-hHhhccchhhhhhhccccccceeec-cc-------cc-cccccccccccccccccccccc
Confidence            45666666665 3444332 2245566666666666544333211 10       00 3455555555544444433221


Q ss_pred             CCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccc-cCCcceeeccccccc
Q 044585          176 TGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLT-FPQLKELKLSRLHKV  253 (352)
Q Consensus       176 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l  253 (352)
                        .+..+++|+.+.+.++ .++...+......+..+..+. ....+..+....        +.. ...++.|++++ +.+
T Consensus        98 --~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~--------~~~~~~~l~~L~l~~-n~l  165 (242)
T d1xwdc1          98 --AFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS--------FVGLSFESVILWLNK-NGI  165 (242)
T ss_dssp             --SEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTS--------STTSBSSCEEEECCS-SCC
T ss_pred             --cccccccccccccchh-hhcccccccccccccccccccccccccccccccc--------cccccccceeeeccc-ccc
Confidence              3555667777777665 343332222221222222222 333333322211        111 24677888877 567


Q ss_pred             ccccccccccccccCCcceEEEecCCCcccccCC-ccCCCCCcEEeecCCccccccccccccCccccccEEEEeccccc
Q 044585          254 QHLWKENDESNKAFANLKSLEIFECSKLQKLVPA-SWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIADCKRI  331 (352)
Q Consensus       254 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l  331 (352)
                      +.++...+    ..++++.+....+..++.++.. +..+++|++|++++++ ++.++. ..+.++++|+.+++.++.++
T Consensus       166 ~~i~~~~~----~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         166 QEIHNCAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS-YGLENLKKLRARSTYNLKKL  238 (242)
T ss_dssp             CEECTTTT----TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS-SSCTTCCEEESSSEESSSCS
T ss_pred             cccccccc----cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH-HHHcCCcccccCcCCCCCcC
Confidence            77766554    5566777766666678888753 5778999999997764 777754 45667777777766655433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=9.1e-13  Score=109.61  Aligned_cols=79  Identities=16%  Similarity=0.208  Sum_probs=55.8

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCc
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRS  316 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  316 (352)
                      ...++|+.|++.++ .+.....  +   ..+++|+.|++++| +++.++. +..+++|++|++++| +++++++   ...
T Consensus       148 ~~~~~L~~L~l~~n-~~~~~~~--l---~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~---l~~  215 (227)
T d1h6ua2         148 AGLTNLQYLSIGNA-QVSDLTP--L---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP---LAN  215 (227)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTT
T ss_pred             cccccccccccccc-ccccchh--h---cccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc---ccc
Confidence            34567888888875 3333322  2   46788888888887 6777653 577888899998887 5777753   457


Q ss_pred             cccccEEEEec
Q 044585          317 LIILQSMTIAD  327 (352)
Q Consensus       317 l~~L~~L~i~~  327 (352)
                      +++|+.|++++
T Consensus       216 l~~L~~L~lsn  226 (227)
T d1h6ua2         216 TSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCCEEEeeC
Confidence            78888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-12  Score=113.02  Aligned_cols=212  Identities=20%  Similarity=0.242  Sum_probs=111.7

Q ss_pred             cceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhce-eeeccCccceeEeccCCCcceeccCCCCCCCCCCC
Q 044585           19 NMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYE-VMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNN   97 (352)
Q Consensus        19 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~   97 (352)
                      +++.+|..+  .+++++|+|+++              .+..+|. .+.++++|++|+++++. +..+.... .  ..++.
T Consensus        22 ~L~~iP~~i--p~~~~~L~Ls~N--------------~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~-~--~~~~~   81 (284)
T d1ozna_          22 GLQAVPVGI--PAASQRIFLHGN--------------RISHVPAASFRACRNLTILWLHSNV-LARIDAAA-F--TGLAL   81 (284)
T ss_dssp             CCSSCCTTC--CTTCSEEECTTS--------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-T--TTCTT
T ss_pred             CCCccCCCC--CCCCCEEECcCC--------------cCCCCCHHHhhcccccccccccccc-cccccccc-c--ccccc
Confidence            467777655  356788888843              3344443 34567778888887665 55544332 1  23566


Q ss_pred             ccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccccccccccccCC
Q 044585           98 LRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTG  177 (352)
Q Consensus        98 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  177 (352)
                      ++++.+.....+....+. .+..+++|++|+++++... .+..        .... .+++|+.+++.+. .++.+...  
T Consensus        82 ~~~l~~~~~~~~~~l~~~-~~~~l~~L~~L~l~~n~~~-~~~~--------~~~~-~~~~L~~l~l~~N-~l~~i~~~--  147 (284)
T d1ozna_          82 LEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGLQ-ELGP--------GLFR-GLAALQYLYLQDN-ALQALPDD--  147 (284)
T ss_dssp             CCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSCCC-CCCT--------TTTT-TCTTCCEEECCSS-CCCCCCTT--
T ss_pred             ccccccccccccccccch-hhcccccCCEEecCCcccc-cccc--------cccc-hhcccchhhhccc-cccccChh--
Confidence            777766655455554333 3567777888777775432 1110        0111 4556666666543 23333221  


Q ss_pred             ceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeeccccccccccc
Q 044585          178 NIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLW  257 (352)
Q Consensus       178 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  257 (352)
                      .+..+++|+.|+++++ .++.+ +...+                               ..+++|+.+++++ +.++.+.
T Consensus       148 ~f~~~~~L~~L~l~~N-~l~~l-~~~~f-------------------------------~~l~~L~~l~l~~-N~l~~i~  193 (284)
T d1ozna_         148 TFRDLGNLTHLFLHGN-RISSV-PERAF-------------------------------RGLHSLDRLLLHQ-NRVAHVH  193 (284)
T ss_dssp             TTTTCTTCCEEECCSS-CCCEE-CTTTT-------------------------------TTCTTCCEEECCS-SCCCEEC
T ss_pred             HhccccchhhcccccC-ccccc-chhhh-------------------------------ccccccchhhhhh-ccccccC
Confidence            2344566666666665 44444 22222                               2345555666655 2344444


Q ss_pred             ccccccccccCCcceEEEecCCCccccc-CCccCCCCCcEEeecCC
Q 044585          258 KENDESNKAFANLKSLEIFECSKLQKLV-PASWHLENLEALKVSKC  302 (352)
Q Consensus       258 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c  302 (352)
                      ...+   ..+++|+.|+++++. +..++ ..+..+++|++|+++++
T Consensus       194 ~~~f---~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         194 PHAF---RDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTT---TTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhHh---hhhhhcccccccccc-cccccccccccccccCEEEecCC
Confidence            4444   455566666666553 33333 23445566666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.41  E-value=7.6e-12  Score=110.39  Aligned_cols=95  Identities=14%  Similarity=0.209  Sum_probs=69.4

Q ss_pred             CCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            7 PSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         7 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      .++++|++.++ +++.+|..   .++|++|++++              ..+.++|..   +.+|++|++.++. ++.+..
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~--------------N~l~~lp~~---~~~L~~L~l~~n~-l~~l~~   95 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL---PPHLESLVASC--------------NSLTELPEL---PQSLKSLLVDNNN-LKALSD   95 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC---CTTCSEEECCS--------------SCCSSCCCC---CTTCCEEECCSSC-CSCCCS
T ss_pred             cCCCEEEeCCC-CCCCCCCC---CCCCCEEECCC--------------CCCcccccc---hhhhhhhhhhhcc-cchhhh
Confidence            46899999998 78888853   67999999994              345566653   4679999999876 554321


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL  134 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  134 (352)
                             ..++|++|+++++ .+...+.   ...+++|++|+++++..
T Consensus        96 -------lp~~L~~L~L~~n-~l~~lp~---~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          96 -------LPPLLEYLGVSNN-QLEKLPE---LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             -------CCTTCCEEECCSS-CCSSCCC---CTTCTTCCEEECCSSCC
T ss_pred             -------hcccccccccccc-ccccccc---hhhhccceeeccccccc
Confidence                   2347999999988 5666543   34788999999987653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=4e-12  Score=105.59  Aligned_cols=188  Identities=18%  Similarity=0.219  Sum_probs=131.3

Q ss_pred             eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccc
Q 044585           65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEEL  144 (352)
Q Consensus        65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  144 (352)
                      ..+.+|++|++.++. ++.+ .+.    +.+++|++|++++| .+....+   +..+++|+.++++++. ++.+..+.  
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l-~~l----~~l~~L~~L~ls~n-~i~~~~~---l~~l~~l~~l~~~~n~-~~~i~~l~--  104 (227)
T d1h6ua2          38 ADLDGITTLSAFGTG-VTTI-EGV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVSAIA--  104 (227)
T ss_dssp             HHHHTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGT--
T ss_pred             HHcCCcCEEECCCCC-CCcc-hhH----hcCCCCcEeecCCc-eeecccc---cccccccccccccccc-cccccccc--
Confidence            367889999999886 7664 233    46899999999998 4555443   5588999999998864 33332222  


Q ss_pred             cccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchh
Q 044585          145 NAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENF  223 (352)
Q Consensus       145 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~  223 (352)
                               .+++|+.+.+.++......     .+...+.++.+.+.++. +...   .....+++|++|. .++.+...
T Consensus       105 ---------~l~~L~~l~l~~~~~~~~~-----~~~~~~~~~~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2         105 ---------GLQSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQ-ITNI---SPLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             ---------TCTTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCCEEECCSSCCCCC
T ss_pred             ---------ccccccccccccccccccc-----hhccccchhhhhchhhh-hchh---hhhccccccccccccccccccc
Confidence                     6888999888876533211     23446788888887763 3322   1133678888888 55555432


Q ss_pred             hhhcccCCCCCcccccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecC
Q 044585          224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSK  301 (352)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~  301 (352)
                      .          +++.+++|++|+++++ .+++++.  +   ..+++|+.|++++| +++.+++ +..+++|+.|++++
T Consensus       167 ~----------~l~~l~~L~~L~Ls~n-~l~~l~~--l---~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 T----------PLANLSKLTTLKADDN-KISDISP--L---ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             G----------GGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             h----------hhcccccceecccCCC-ccCCChh--h---cCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            2          1356789999999985 6777653  3   57899999999998 6888763 67899999999853

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.8e-11  Score=102.53  Aligned_cols=63  Identities=27%  Similarity=0.296  Sum_probs=37.7

Q ss_pred             CCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCcccccc
Q 044585          240 PQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINL  308 (352)
Q Consensus       240 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  308 (352)
                      +++.++...+++.++.++...+   ..+++|+.|+++++ +++.+|..  .+.+|..|..-+..+++.+
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~f---~~l~~L~~L~Ls~N-~l~~l~~~--~~~~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKL  238 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTTT---TTSCCCSEEECTTS-CCCCCCSS--SCTTCCEEESSSEESSSCS
T ss_pred             hhhhccccccccccccccHHHh---cCCCCCCEEECCCC-cCCccCHH--HHcCCcccccCcCCCCCcC
Confidence            4566665555567777777666   57788888888876 46777642  2344444433333334443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=6.4e-12  Score=102.13  Aligned_cols=148  Identities=16%  Similarity=0.282  Sum_probs=74.4

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      ++++++|++.+| +++++. ++..+++|++|++++|.              +..++. +..+++|++|+++++. +..++
T Consensus        39 l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N~--------------l~~~~~-l~~l~~L~~L~l~~n~-~~~~~  100 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQ--------------LTDITP-LKNLTKLVDILMNNNQ-IADIT  100 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC--------------CCCCGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred             hcCCCEEECCCC-CCCCcc-ccccCCCcCcCcccccc--------------ccCccc-ccCCcccccccccccc-ccccc
Confidence            566666666666 455442 34556666666666432              222221 3455666666666654 33322


Q ss_pred             cCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccc
Q 044585           86 HGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLID  165 (352)
Q Consensus        86 ~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  165 (352)
                      . .    +.+++|+.|++++|. .....+   +..+++|+.|++++|. +..++.+.           .+++|+.|++.+
T Consensus       101 ~-l----~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~l~-----------~~~~L~~L~l~~  159 (199)
T d2omxa2         101 P-L----ANLTNLTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNT-ISDISALS-----------GLTSLQQLNFSS  159 (199)
T ss_dssp             G-G----TTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CCCCGGGT-----------TCTTCSEEECCS
T ss_pred             c-c----ccccccccccccccc-cccccc---cchhhhhHHhhhhhhh-hccccccc-----------cccccccccccc
Confidence            1 1    245666666666653 222211   3456666666666643 22221111           455666666655


Q ss_pred             ccccccccccCCceeeccCcceEeeccCCCCcc
Q 044585          166 LPKLKRFCNFTGNIIELSELENLTIENCPDMET  198 (352)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  198 (352)
                      +. ++.+.    .+..+++|+.|+++++ .+++
T Consensus       160 n~-l~~l~----~l~~l~~L~~L~ls~N-~i~~  186 (199)
T d2omxa2         160 NQ-VTDLK----PLANLTTLERLDISSN-KVSD  186 (199)
T ss_dssp             SC-CCCCG----GGTTCTTCCEEECCSS-CCCC
T ss_pred             cc-ccCCc----cccCCCCCCEEECCCC-CCCC
Confidence            42 33321    2344566666666665 3444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=1.2e-11  Score=101.28  Aligned_cols=165  Identities=21%  Similarity=0.322  Sum_probs=84.4

Q ss_pred             CCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeecccccccccccc
Q 044585           94 FFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFC  173 (352)
Q Consensus        94 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  173 (352)
                      .+.+|++|++++| .+.....   +..+++|++|++++|. ++.+....           .+++|+.|+++++ .++.++
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~L~~n~-i~~l~~~~-----------~l~~L~~L~l~~n-~i~~l~  106 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGNK-LTDIKPLA-----------NLKNLGWLFLDEN-KVKDLS  106 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSSC-CCCCGGGT-----------TCTTCCEEECCSS-CCCCGG
T ss_pred             HhcCccEEECcCC-CCCCchh---HhhCCCCCEEeCCCcc-ccCccccc-----------cCccccccccccc-cccccc
Confidence            3566777777776 4444332   4467777777777753 33332221           5666777776654 244332


Q ss_pred             ccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchhhhhcccCCCCCcccccCCcceeeccccccc
Q 044585          174 NFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKV  253 (352)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  253 (352)
                          .+..+++|+.|.+.++. +..+ + .                                +..++.++.++++++ .+
T Consensus       107 ----~l~~l~~L~~L~l~~~~-~~~~-~-~--------------------------------l~~l~~l~~l~~~~n-~l  146 (210)
T d1h6ta2         107 ----SLKDLKKLKSLSLEHNG-ISDI-N-G--------------------------------LVHLPQLESLYLGNN-KI  146 (210)
T ss_dssp             ----GGTTCTTCCEEECTTSC-CCCC-G-G--------------------------------GGGCTTCCEEECCSS-CC
T ss_pred             ----ccccccccccccccccc-cccc-c-c--------------------------------ccccccccccccccc-cc
Confidence                23445677777776663 2221 1 1                                122345555555542 33


Q ss_pred             ccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCccccccEEEEe
Q 044585          254 QHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSLIILQSMTIA  326 (352)
Q Consensus       254 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~  326 (352)
                      ++....     ..+++|+.++++++ .++.+++ +..+++|++|++++| ++++++   .+.++++|+.|+++
T Consensus       147 ~~~~~~-----~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         147 TDITVL-----SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCCGGG-----GGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEEEE
T ss_pred             cccccc-----cccccccccccccc-ccccccc-ccCCCCCCEEECCCC-CCCCCh---hhcCCCCCCEEEcc
Confidence            332211     34556666666555 3344432 345666666666554 455542   13445566666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=6.8e-11  Score=95.90  Aligned_cols=74  Identities=20%  Similarity=0.283  Sum_probs=43.1

Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcc
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSL  317 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  317 (352)
                      .+++|+.|+++++ .+..++.  +   ..+++|+.|++.+| +++.++ .+..+++|++|++++| ++++++.   +..+
T Consensus       126 ~l~~L~~L~l~~n-~l~~~~~--l---~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~---l~~L  193 (199)
T d2omxa2         126 NLTNLNRLELSSN-TISDISA--L---SGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDISV---LAKL  193 (199)
T ss_dssp             TCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGG---GGGC
T ss_pred             hhhhhHHhhhhhh-hhccccc--c---cccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCcc---ccCC
Confidence            3456677777663 3444331  2   45667777777765 455554 3466777777777666 4666532   3455


Q ss_pred             ccccEE
Q 044585          318 IILQSM  323 (352)
Q Consensus       318 ~~L~~L  323 (352)
                      ++|++|
T Consensus       194 ~~L~~L  199 (199)
T d2omxa2         194 TNLESL  199 (199)
T ss_dssp             TTCSEE
T ss_pred             CCCCcC
Confidence            666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.19  E-value=3.2e-10  Score=99.69  Aligned_cols=70  Identities=23%  Similarity=0.195  Sum_probs=53.4

Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCCccccccccccccCcc
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKCHRLINLLTLSTSRSL  317 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  317 (352)
                      .+++|++|++++| .++.++       ..+++|+.|++++| .++.+|.   .+++|++|++++|+ ++.+|.  .+.+ 
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp-------~~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~--~~~~-  345 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELP-------ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPD--IPES-  345 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCC--CCTT-
T ss_pred             cCCCCCEEECCCC-ccCccc-------cccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCc--cccc-
Confidence            3579999999995 677776       35789999999988 6888874   36789999998885 888754  3444 


Q ss_pred             ccccEEEE
Q 044585          318 IILQSMTI  325 (352)
Q Consensus       318 ~~L~~L~i  325 (352)
                        |+.|.+
T Consensus       346 --L~~L~~  351 (353)
T d1jl5a_         346 --VEDLRM  351 (353)
T ss_dssp             --CCEEEC
T ss_pred             --cCeeEC
Confidence              666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=3.3e-11  Score=98.68  Aligned_cols=163  Identities=18%  Similarity=0.295  Sum_probs=117.1

Q ss_pred             ecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCccee
Q 044585            5 EFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREI   84 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~   84 (352)
                      ++.+|++|++.+| .++.++ ++..+++|++|++++|.              +..++. +..+++|+.|+++++. ++.+
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~--------------i~~l~~-~~~l~~L~~L~l~~n~-i~~l  105 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK--------------LTDIKP-LANLKNLGWLFLDENK-VKDL  105 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC--------------CCCCGG-GTTCTTCCEEECCSSC-CCCG
T ss_pred             HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCcc--------------ccCccc-cccCcccccccccccc-cccc
Confidence            3678999999998 677664 46789999999999543              333332 3578999999999886 7765


Q ss_pred             ccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccc
Q 044585           85 WHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLI  164 (352)
Q Consensus        85 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  164 (352)
                      +. .    ..+++|+.|++.+|. .....   .+..++.|+.+.++++. +.......           .+++|+.++++
T Consensus       106 ~~-l----~~l~~L~~L~l~~~~-~~~~~---~l~~l~~l~~l~~~~n~-l~~~~~~~-----------~l~~L~~l~l~  164 (210)
T d1h6ta2         106 SS-L----KDLKKLKSLSLEHNG-ISDIN---GLVHLPQLESLYLGNNK-ITDITVLS-----------RLTKLDTLSLE  164 (210)
T ss_dssp             GG-G----TTCTTCCEEECTTSC-CCCCG---GGGGCTTCCEEECCSSC-CCCCGGGG-----------GCTTCSEEECC
T ss_pred             cc-c----ccccccccccccccc-ccccc---ccccccccccccccccc-cccccccc-----------ccccccccccc
Confidence            42 2    368999999999984 33332   25688999999998865 33322211           68899999998


Q ss_pred             cccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC
Q 044585          165 DLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ  215 (352)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  215 (352)
                      ++. +..+.    .+..+++|++|+++++ .++++ + . ..++++|+.|+
T Consensus       165 ~n~-l~~i~----~l~~l~~L~~L~Ls~N-~i~~l-~-~-l~~l~~L~~L~  206 (210)
T d1h6ta2         165 DNQ-ISDIV----PLAGLTKLQNLYLSKN-HISDL-R-A-LAGLKNLDVLE  206 (210)
T ss_dssp             SSC-CCCCG----GGTTCTTCCEEECCSS-CCCBC-G-G-GTTCTTCSEEE
T ss_pred             ccc-ccccc----cccCCCCCCEEECCCC-CCCCC-h-h-hcCCCCCCEEE
Confidence            774 44432    2556899999999988 67765 3 2 34678888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=1.4e-10  Score=86.27  Aligned_cols=101  Identities=12%  Similarity=0.168  Sum_probs=77.4

Q ss_pred             cEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCC
Q 044585           10 EQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQA   89 (352)
Q Consensus        10 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   89 (352)
                      |+|+++++ +++.++. +..+++|++|++++              ..+.++|..+..+++|+.|+++++. ++.++. . 
T Consensus         1 R~L~Ls~n-~l~~l~~-l~~l~~L~~L~ls~--------------N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~-   61 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH--------------NRLRALPPALAALRCLEVLQASDNA-LENVDG-V-   61 (124)
T ss_dssp             SEEECTTS-CCSSCCC-GGGGTTCCEEECCS--------------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-G-
T ss_pred             CEEEcCCC-CCCCCcc-cccCCCCCEEECCC--------------CccCcchhhhhhhhccccccccccc-ccccCc-c-
Confidence            67899998 7877764 77899999999994              3455667667788999999999877 776542 2 


Q ss_pred             CCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCC
Q 044585           90 VPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        90 l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                         ..+++|++|+++++ .+........+..+++|+.|++++++
T Consensus        62 ---~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          62 ---ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             ---TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ---ccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc
Confidence               36889999999987 56555444446788999999998865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.5e-11  Score=91.91  Aligned_cols=33  Identities=0%  Similarity=-0.007  Sum_probs=16.3

Q ss_pred             cCCccEEeccccccceEeccCCCCCCCceEEEec
Q 044585            6 FPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVT   39 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~   39 (352)
                      +.++|+|++++| +++.++..+..+++|++|+++
T Consensus        17 ~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls   49 (162)
T d1a9na_          17 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFS   49 (162)
T ss_dssp             TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECC
T ss_pred             cCcCcEEECCCC-CCCccCccccccccCCEEECC
Confidence            344555555555 444444333345555555555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-09  Score=84.81  Aligned_cols=85  Identities=14%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             CCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecC
Q 044585           27 ISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDC  106 (352)
Q Consensus        27 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c  106 (352)
                      +..+.+|++|+++++              .+..++.....+++|+.|+++++. ++.+. +.    ..+++|++|++++|
T Consensus        14 ~~n~~~lr~L~L~~n--------------~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~----~~l~~L~~L~ls~N   73 (162)
T d1a9na_          14 YTNAVRDRELDLRGY--------------KIPVIENLGATLDQFDAIDFSDNE-IRKLD-GF----PLLRRLKTLLVNNN   73 (162)
T ss_dssp             EECTTSCEEEECTTS--------------CCCSCCCGGGGTTCCSEEECCSSC-CCEEC-CC----CCCSSCCEEECCSS
T ss_pred             ccCcCcCcEEECCCC--------------CCCccCccccccccCCEEECCCCC-CCccC-Cc----ccCcchhhhhcccc
Confidence            345667777777743              333333333456777777777765 66542 12    34677777777776


Q ss_pred             CCCcccCCchhhhcCCCCcEEEEccCC
Q 044585          107 TNMSSAIPTNLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus       107 ~~l~~~~~~~~~~~l~~L~~L~l~~~~  133 (352)
                       .+...++ ..+..+++|++|++++|.
T Consensus        74 -~i~~l~~-~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          74 -RICRIGE-GLDQALPDLTELILTNNS   98 (162)
T ss_dssp             -CCCEECS-CHHHHCTTCCEEECCSCC
T ss_pred             -cccCCCc-cccccccccccceecccc
Confidence             4555433 334567777777777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.70  E-value=4.7e-11  Score=96.69  Aligned_cols=149  Identities=18%  Similarity=0.258  Sum_probs=93.0

Q ss_pred             CccEEecccc-ccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceecc
Q 044585            8 SLEQVSMTHC-PNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWH   86 (352)
Q Consensus         8 ~L~~L~l~~~-~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~   86 (352)
                      .++.+.+.+. +.++.++..+..+++|++|+++++              .+..++ .+..+++|++|++++|. ++.++.
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n--------------~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~   87 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN--------------NIEKIS-SLSGMENLRILSLGRNL-IKKIEN   87 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE--------------EESCCC-CHHHHTTCCEEECCEEE-ECSCSS
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECccc--------------CCCCcc-cccCCccccChhhcccc-cccccc
Confidence            3455555543 345566666777899999999943              344443 35578899999999886 665332


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCcceeeeeccccccccccCCCCcccCeeccccc
Q 044585           87 GQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLIEEVLHLEELNAKEEHIGPRFPRLNRLRLIDL  166 (352)
Q Consensus        87 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  166 (352)
                      ..    ..+++|++|++++| .+....   .+..+++|+.|++++|. ++.+..+..       +. .+++|+.|++.++
T Consensus        88 ~~----~~~~~L~~L~l~~N-~i~~l~---~~~~l~~L~~L~L~~N~-i~~~~~~~~-------l~-~l~~L~~L~L~~N  150 (198)
T d1m9la_          88 LD----AVADTLEELWISYN-QIASLS---GIEKLVNLRVLYMSNNK-ITNWGEIDK-------LA-ALDKLEDLLLAGN  150 (198)
T ss_dssp             HH----HHHHHCCEEECSEE-ECCCHH---HHHHHHHSSEEEESEEE-CCCHHHHHH-------HT-TTTTCSEEEECSS
T ss_pred             cc----cccccccccccccc-cccccc---cccccccccccccccch-hcccccccc-------cc-CCCccceeecCCC
Confidence            11    23567999999887 565532   25678899999998864 333322111       12 7889999999886


Q ss_pred             cccccccccCC-------ceeeccCcceEe
Q 044585          167 PKLKRFCNFTG-------NIIELSELENLT  189 (352)
Q Consensus       167 ~~l~~~~~~~~-------~~~~~~~L~~L~  189 (352)
                      +-.........       .+..+|+|+.|+
T Consensus       151 ~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            53222111110       245678888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=1.8e-08  Score=74.50  Aligned_cols=104  Identities=12%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             eecCCccEEeccccccceEeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcce
Q 044585            4 LEFPSLEQVSMTHCPNMKTFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLRE   83 (352)
Q Consensus         4 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~   83 (352)
                      .++++|++|++.+| .++.+|..+..+++|++|+++++              .+..++ .+..+++|++|+++++. ++.
T Consensus        17 ~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N--------------~i~~l~-~~~~l~~L~~L~l~~N~-i~~   79 (124)
T d1dcea3          17 EQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN--------------ALENVD-GVANLPRLQELLLCNNR-LQQ   79 (124)
T ss_dssp             GGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS--------------CCCCCG-GGTTCSSCCEEECCSSC-CCS
T ss_pred             ccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc--------------cccccC-ccccccccCeEECCCCc-cCC
Confidence            45899999999998 88999988889999999999954              333443 25688999999999987 665


Q ss_pred             eccCCCCCCCCCCCccEEEEecCCCCcccC--CchhhhcCCCCcEE
Q 044585           84 IWHGQAVPVSFFNNLRQLAVDDCTNMSSAI--PTNLLRCLNNLRCL  127 (352)
Q Consensus        84 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L  127 (352)
                      .+.-..+  ..+++|+.|++++++ +....  .......+|+|+.|
T Consensus        80 ~~~~~~l--~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          80 SAAIQPL--VSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSTTGGG--GGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCchhh--cCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            4321102  358899999999873 33322  23445667888776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=9.1e-08  Score=76.44  Aligned_cols=109  Identities=14%  Similarity=0.190  Sum_probs=81.8

Q ss_pred             ccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCCCcccccCCcceeecccccccccccccc
Q 044585          182 LSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKEN  260 (352)
Q Consensus       182 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  260 (352)
                      ++++++|+++++ .++...+...+.++++|+.|+ ..+.+..+....        +..+++|++|++++ +.++.++...
T Consensus        28 p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~--------~~~~~~L~~L~Ls~-N~l~~l~~~~   97 (192)
T d1w8aa_          28 PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--------FEGASHIQELQLGE-NKIKEISNKM   97 (192)
T ss_dssp             CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--------TTTCTTCCEEECCS-CCCCEECSSS
T ss_pred             CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccc--------cccccccceeeecc-ccccccCHHH
Confidence            368999999887 455433555556788888888 666666554432        45678899999998 5888888877


Q ss_pred             cccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCcc
Q 044585          261 DESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHR  304 (352)
Q Consensus       261 ~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~  304 (352)
                      +   ..+++|++|+++++ .++.+++ .+..+++|++|++.+++-
T Consensus        98 F---~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          98 F---LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             S---TTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             H---hCCCcccccccCCc-cccccCHHHhcCCccccccccccccc
Confidence            7   68899999999987 6777765 467888999999977654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=5.6e-10  Score=90.18  Aligned_cols=136  Identities=21%  Similarity=0.236  Sum_probs=91.2

Q ss_pred             hhhhhceeeeccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCCc
Q 044585           56 TIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDLI  135 (352)
Q Consensus        56 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  135 (352)
                      .+..++..+..+++|++|+++++. ++.+. +.    ..+++|++|++++| .+...+.  ....+++|++|++++|. +
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l----~~l~~L~~L~Ls~N-~i~~i~~--~~~~~~~L~~L~l~~N~-i  105 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-I  105 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CH----HHHTTCCEEECCEE-EECSCSS--HHHHHHHCCEEECSEEE-C
T ss_pred             chhhhhhHHhcccccceeECcccC-CCCcc-cc----cCCccccChhhccc-ccccccc--ccccccccccccccccc-c
Confidence            455566667789999999999876 76643 22    36889999999998 5665443  23456789999999874 4


Q ss_pred             ceeeeeccccccccccCCCCcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccc---------hhhh
Q 044585          136 EEVLHLEELNAKEEHIGPRFPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISN---------SVVH  206 (352)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---------~~~~  206 (352)
                      +.+..+.           .+++|+.|+++++. ++.+.... .+..+++|+.|.+++++ +....+.         .+..
T Consensus       106 ~~l~~~~-----------~l~~L~~L~L~~N~-i~~~~~~~-~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_         106 ASLSGIE-----------KLVNLRVLYMSNNK-ITNWGEID-KLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             CCHHHHH-----------HHHHSSEEEESEEE-CCCHHHHH-HHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHH
T ss_pred             ccccccc-----------ccccccccccccch-hccccccc-cccCCCccceeecCCCc-cccCcccccchhhHHHHHHH
Confidence            4432222           68899999998753 33332111 35678999999999874 2211111         1244


Q ss_pred             ccCCCCCCC
Q 044585          207 VTTNNKEPQ  215 (352)
Q Consensus       207 ~~~~L~~L~  215 (352)
                      .+|+|+.|+
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            788999887

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.52  E-value=1.5e-07  Score=75.12  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=81.9

Q ss_pred             CcccCeeccccccccccccccCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCC-CCCccchhhhhcccCCCC
Q 044585          155 FPRLNRLRLIDLPKLKRFCNFTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQ-KLTSEENFLLAHQVQPLF  233 (352)
Q Consensus       155 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~~l~~~~~~~~~~~~~  233 (352)
                      .+++++|++++.. +....... .+..+++|+.|.++++ .+..+ +...+..+++|++|+ +.++++.+....      
T Consensus        28 p~~l~~L~Ls~N~-i~~~~~~~-~f~~l~~L~~L~L~~N-~i~~~-~~~~~~~~~~L~~L~Ls~N~l~~l~~~~------   97 (192)
T d1w8aa_          28 PLHTTELLLNDNE-LGRISSDG-LFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQELQLGENKIKEISNKM------   97 (192)
T ss_dssp             CTTCSEEECCSCC-CCSBCCSC-SGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSS------
T ss_pred             CCCCCEEEeCCCC-Cccccccc-ccCCCceEeeeecccc-ccccc-cccccccccccceeeeccccccccCHHH------
Confidence            4589999998764 33222211 4567899999999887 45555 444555789999998 888888776543      


Q ss_pred             CcccccCCcceeecccccccccccccccccccccCCcceEEEecCC
Q 044585          234 DEKLTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECS  279 (352)
Q Consensus       234 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~  279 (352)
                        +..+++|++|+|++ +.++.++...+   ..+++|++|++++++
T Consensus        98 --F~~l~~L~~L~L~~-N~l~~i~~~~f---~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          98 --FLGLHQLKTLNLYD-NQISCVMPGSF---EHLNSLTSLNLASNP  137 (192)
T ss_dssp             --STTCTTCCEEECCS-SCCCEECTTSS---TTCTTCCEEECTTCC
T ss_pred             --HhCCCcccccccCC-ccccccCHHHh---cCCcccccccccccc
Confidence              56789999999999 68899988877   788999999998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.6e-09  Score=98.49  Aligned_cols=113  Identities=12%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             CccEEeccccccceEe--ccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceec
Q 044585            8 SLEQVSMTHCPNMKTF--SRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIW   85 (352)
Q Consensus         8 ~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~   85 (352)
                      +|++|+++++ ++++.  ..-+..++++++|+|++|.+..         ...+.+...+..+++|++|+++++. +++..
T Consensus         3 ~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~---------~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~   71 (460)
T d1z7xw1           3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTE---------ARCKDISSALRVNPALAELNLRSNE-LGDVG   71 (460)
T ss_dssp             EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCH---------HHHHHHHHHHHTCTTCCEEECTTCC-CHHHH
T ss_pred             CCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCH---------HHHHHHHHHHhcCCCCCEEECcCCc-CChHH
Confidence            5667777555 44421  1212346777777777553221         1223334444456677777777664 43211


Q ss_pred             cCC---CCCCCCCCCccEEEEecCCCCcccCCc---hhhhcCCCCcEEEEccCC
Q 044585           86 HGQ---AVPVSFFNNLRQLAVDDCTNMSSAIPT---NLLRCLNNLRCLEVRNCD  133 (352)
Q Consensus        86 ~~~---~l~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~~~  133 (352)
                      ...   .+. ...++|++|++++| .++.....   ..+..+++|++|++++|.
T Consensus        72 ~~~l~~~l~-~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          72 VHCVLQGLQ-TPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHTTC-STTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHHh-cCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence            100   011 12245777777776 34432211   123456677777776643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=9.7e-09  Score=93.11  Aligned_cols=90  Identities=17%  Similarity=0.254  Sum_probs=53.7

Q ss_pred             ecCCccEEeccccccce-----EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeee-ccCccceeEeccC
Q 044585            5 EFPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMI-GFRDIEHLQLSHF   78 (352)
Q Consensus         5 ~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~   78 (352)
                      .++++++|+|.+| +++     .++..+..+++|++|+++++.+...         ....+...+. ...+|++|++++|
T Consensus        25 ~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~---------~~~~l~~~l~~~~~~L~~L~L~~n   94 (460)
T d1z7xw1          25 LLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDV---------GVHCVLQGLQTPSCKIQKLSLQNC   94 (460)
T ss_dssp             HHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH---------HHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             hCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH---------HHHHHHHHHhcCCCCCCEEECCCC
Confidence            4789999999999 454     3334446789999999996533211         1111111111 2346888888887


Q ss_pred             CCcceeccCCCCCC--CCCCCccEEEEecC
Q 044585           79 PRLREIWHGQAVPV--SFFNNLRQLAVDDC  106 (352)
Q Consensus        79 ~~l~~~~~~~~l~~--~~l~~L~~L~l~~c  106 (352)
                      . +++..... ++.  ..+++|++|++++|
T Consensus        95 ~-it~~~~~~-l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          95 C-LTGAGCGV-LSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             C-CBGGGHHH-HHHHTTSCTTCCEEECCSS
T ss_pred             C-cccccccc-ccchhhccccccccccccc
Confidence            6 65432111 110  24678888888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.23  E-value=5.1e-08  Score=85.39  Aligned_cols=152  Identities=12%  Similarity=0.062  Sum_probs=72.7

Q ss_pred             CCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCCcceeccCC-----CCCC--CCCCCccE
Q 044585           28 SSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPRLREIWHGQ-----AVPV--SFFNNLRQ  100 (352)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----~l~~--~~l~~L~~  100 (352)
                      ....+|+.|+++++.+..         .....+...+...++|+.++++++. ........     .+..  ..+++|++
T Consensus        28 ~~~~~l~~L~Ls~n~i~~---------~~~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGT---------EAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             HHCSCCCEEECTTSEECH---------HHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             hhCCCCCEEECcCCcCCH---------HHHHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCCccc
Confidence            346777778877431111         1122233334466777888877654 11100000     0000  23567888


Q ss_pred             EEEecCCCCcccCCc---hhhhcCCCCcEEEEccCCCcceeeeeccc-ccccc-----ccCCCCcccCeecccccccccc
Q 044585          101 LAVDDCTNMSSAIPT---NLLRCLNNLRCLEVRNCDLIEEVLHLEEL-NAKEE-----HIGPRFPRLNRLRLIDLPKLKR  171 (352)
Q Consensus       101 L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~-----~~~~~~~~L~~L~l~~~~~l~~  171 (352)
                      |++++| .+......   ..+..+++|++|++++|.. ... ..... .+...     ... ..+.|+.+.+.+.. +..
T Consensus        98 L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~~~-~~~~l~~~l~~~~~~~~~~-~~~~L~~l~l~~n~-i~~  172 (344)
T d2ca6a1          98 VRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQ-AGAKIARALQELAVNKKAK-NAPPLRSIICGRNR-LEN  172 (344)
T ss_dssp             EECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHH-HHHHHHHHHHHHHHHHHHH-TCCCCCEEECCSSC-CTG
T ss_pred             cccccc-ccccccccchhhhhcccccchheecccccc-ccc-ccccccccccccccccccc-cCcccceeeccccc-ccc
Confidence            888877 34432211   1235677888888887642 211 00000 00000     001 45677777776532 211


Q ss_pred             c--cccCCceeeccCcceEeeccCC
Q 044585          172 F--CNFTGNIIELSELENLTIENCP  194 (352)
Q Consensus       172 ~--~~~~~~~~~~~~L~~L~l~~c~  194 (352)
                      -  ......+..+++|+.|.+++|.
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccchhhhhhhhccccccccc
Confidence            0  0000023456789999998873

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.2e-06  Score=64.66  Aligned_cols=60  Identities=15%  Similarity=0.115  Sum_probs=33.2

Q ss_pred             ccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccCCccCCCCCcEEeecCC
Q 044585          238 TFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVPASWHLENLEALKVSKC  302 (352)
Q Consensus       238 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c  302 (352)
                      .+++|+.|++++ +.++.++..++   ..+++|++|+++++ +++.++.......+|++|+++++
T Consensus        54 ~l~~L~~L~Ls~-N~l~~i~~~~f---~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          54 GLGELRNLTIVK-SGLRFVAPDAF---HFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SCCCCSEEECCS-SCCCEECTTGG---GSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred             cccccCcceeec-cccCCcccccc---cccccccceeccCC-CCcccChhhhccccccccccCCC
Confidence            345666666665 35555555544   45566666666655 45555544333345666666544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.6e-06  Score=63.31  Aligned_cols=86  Identities=23%  Similarity=0.268  Sum_probs=69.1

Q ss_pred             cccCCcceeecccccccccccccccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCccccccccccccC
Q 044585          237 LTFPQLKELKLSRLHKVQHLWKENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCHRLINLLTLSTSR  315 (352)
Q Consensus       237 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  315 (352)
                      ..+++|++|++++.+.++.++...+   ..+++|+.|+++++ +++.++. .+..+++|++|+++++ +++.++. .++.
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f---~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~  101 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDL---RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW-KTVQ  101 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGS---CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCS-TTTC
T ss_pred             cCccccCeeecCCCccccccCchhh---ccccccCcceeecc-ccCCcccccccccccccceeccCC-CCcccCh-hhhc
Confidence            4467999999998778999988877   78999999999998 6888854 5789999999999666 6777755 3444


Q ss_pred             ccccccEEEEeccc
Q 044585          316 SLIILQSMTIADCK  329 (352)
Q Consensus       316 ~l~~L~~L~i~~c~  329 (352)
                      . .+|+.|++++.|
T Consensus       102 ~-~~l~~L~L~~Np  114 (156)
T d2ifga3         102 G-LSLQELVLSGNP  114 (156)
T ss_dssp             S-CCCCEEECCSSC
T ss_pred             c-ccccccccCCCc
Confidence            3 469999999754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.05  E-value=2.7e-07  Score=80.61  Aligned_cols=253  Identities=12%  Similarity=0.141  Sum_probs=138.0

Q ss_pred             cCCccEEeccccccce-----EeccCCCCCCCceEEEecccccCcceeecCccchhhhhhceeeeccCccceeEeccCCC
Q 044585            6 FPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTEREEGEHHWEGNKLNSTIQKCYEVMIGFRDIEHLQLSHFPR   80 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~   80 (352)
                      ..+|+.|++.+| .+.     .+...+...++|+.++++++......-.   .......+...+...++|++|+++++. 
T Consensus        30 ~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~l~~~l~~~~~L~~L~L~~n~-  104 (344)
T d2ca6a1          30 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE---IPEALRLLLQALLKCPKLHTVRLSDNA-  104 (344)
T ss_dssp             CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGG---SHHHHHHHHHHHTTCTTCCEEECCSCC-
T ss_pred             CCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccc---cchHHHHHHHHHhhCCCcccccccccc-
Confidence            678999999998 443     4555667899999999985422111100   011233344555577899999999886 


Q ss_pred             cceeccCCCCCC--CCCCCccEEEEecCCCCcccCCch------------hhhcCCCCcEEEEccCCCcceeeeeccccc
Q 044585           81 LREIWHGQAVPV--SFFNNLRQLAVDDCTNMSSAIPTN------------LLRCLNNLRCLEVRNCDLIEEVLHLEELNA  146 (352)
Q Consensus        81 l~~~~~~~~l~~--~~l~~L~~L~l~~c~~l~~~~~~~------------~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  146 (352)
                      +....... +..  ...++|++|++++| .+.......            .....+.|+.+.++++. +..    .+...
T Consensus       105 i~~~~~~~-l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~----~~~~~  177 (344)
T d2ca6a1         105 FGPTAQEP-LIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LEN----GSMKE  177 (344)
T ss_dssp             CCTTTHHH-HHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTG----GGHHH
T ss_pred             cccccccc-hhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeeccccc-ccc----ccccc
Confidence            54321111 110  24678999999988 343221111            12356789999998754 221    11111


Q ss_pred             cccccCCCCcccCeecccccccccc--ccc-cCCceeeccCcceEeeccCCCCcccccchhhhccCCCCCCCCCCccchh
Q 044585          147 KEEHIGPRFPRLNRLRLIDLPKLKR--FCN-FTGNIIELSELENLTIENCPDMETFISNSVVHVTTNNKEPQKLTSEENF  223 (352)
Q Consensus       147 ~~~~~~~~~~~L~~L~l~~~~~l~~--~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~~l~~~  223 (352)
                      ....+. .++.|+.|++.++. +..  +.. ....+..+++|+.|+++++. ++......+...                
T Consensus       178 l~~~l~-~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~----------------  238 (344)
T d2ca6a1         178 WAKTFQ-SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA----------------  238 (344)
T ss_dssp             HHHHHH-HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH----------------
T ss_pred             ccchhh-hhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-cccccccccccc----------------
Confidence            112222 57789999998764 221  000 01135678899999998874 433211112110                


Q ss_pred             hhhcccCCCCCcccccCCcceeecccccccccccccccccc---cccCCcceEEEecCCCccc-----ccCCcc-CCCCC
Q 044585          224 LLAHQVQPLFDEKLTFPQLKELKLSRLHKVQHLWKENDESN---KAFANLKSLEIFECSKLQK-----LVPASW-HLENL  294 (352)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~---~~~~~L~~L~l~~c~~l~~-----l~~~~~-~~~~L  294 (352)
                                  +..+++|++|++++|. +++.....+...   ...+.|++|+++++. ++.     +...+. ..++|
T Consensus       239 ------------l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L  304 (344)
T d2ca6a1         239 ------------LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDL  304 (344)
T ss_dssp             ------------GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTC
T ss_pred             ------------ccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCC
Confidence                        1234567777777653 332211111000   123567777777763 432     222222 46778


Q ss_pred             cEEeecCCc
Q 044585          295 EALKVSKCH  303 (352)
Q Consensus       295 ~~L~l~~c~  303 (352)
                      ++|+++++.
T Consensus       305 ~~L~l~~N~  313 (344)
T d2ca6a1         305 LFLELNGNR  313 (344)
T ss_dssp             CEEECTTSB
T ss_pred             CEEECCCCc
Confidence            888886654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=4e-05  Score=58.69  Aligned_cols=66  Identities=17%  Similarity=0.082  Sum_probs=34.6

Q ss_pred             eccCccceeEeccCCCcceeccCCCCCCCCCCCccEEEEecCCCCcccCCchhhhcCCCCcEEEEccCCC
Q 044585           65 IGFRDIEHLQLSHFPRLREIWHGQAVPVSFFNNLRQLAVDDCTNMSSAIPTNLLRCLNNLRCLEVRNCDL  134 (352)
Q Consensus        65 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  134 (352)
                      ..+++|++|+++++. ++.+..-.... ..+++|+.|+++++ .+........+ ...+|++|++.+++.
T Consensus        62 ~~~~~L~~L~Ls~N~-i~~l~~~~~~~-~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~Npl  127 (162)
T d1koha1          62 ENIPELLSLNLSNNR-LYRLDDMSSIV-QKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHCTTCCCCCCCSSC-CCCCSGGGTHH-HHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTSTT
T ss_pred             HhCCCCCEeeCCCcc-ccCCchhHHHH-hhCCcccccccccC-ccccchhhhhh-hccccceeecCCCCc
Confidence            356777777777766 55432110000 24567777777766 44444332222 233567777766553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00059  Score=51.87  Aligned_cols=60  Identities=23%  Similarity=0.189  Sum_probs=29.2

Q ss_pred             cCCcceeecccccccccccc--cccccccccCCcceEEEecCCCcccccC-CccCCCCCcEEeecCCc
Q 044585          239 FPQLKELKLSRLHKVQHLWK--ENDESNKAFANLKSLEIFECSKLQKLVP-ASWHLENLEALKVSKCH  303 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~  303 (352)
                      +++|++|++++ +.++++..  ..+   ..+++|+.|+++++ .++.+++ ......+|++|++.+++
T Consensus        64 ~~~L~~L~Ls~-N~i~~l~~~~~~~---~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSN-NRLYRLDDMSSIV---QKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCS-SCCCCCSGGGTHH---HHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCC-ccccCCchhHHHH---hhCCcccccccccC-ccccchhhhhhhccccceeecCCCC
Confidence            45666666666 34444421  111   34566666666665 3444432 11223356666665553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.07  E-value=0.0022  Score=48.83  Aligned_cols=11  Identities=18%  Similarity=0.458  Sum_probs=6.0

Q ss_pred             CCccEEecccc
Q 044585            7 PSLEQVSMTHC   17 (352)
Q Consensus         7 ~~L~~L~l~~~   17 (352)
                      ++|++|+|.++
T Consensus        15 ~~L~~L~L~~~   25 (167)
T d1pgva_          15 TDLKEVNINNM   25 (167)
T ss_dssp             SSCCEEECTTC
T ss_pred             CCCcEEEeCCC
Confidence            45555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.39  E-value=0.0018  Score=49.14  Aligned_cols=36  Identities=14%  Similarity=0.270  Sum_probs=17.8

Q ss_pred             cCCccEEeccccccce-----EeccCCCCCCCceEEEeccc
Q 044585            6 FPSLEQVSMTHCPNMK-----TFSRGISSTPKLYVVQVTER   41 (352)
Q Consensus         6 l~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~   41 (352)
                      .|+|++|++.++..++     .+...+...++|++|++++|
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            3566666666543332     12222334556666666643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.58  E-value=0.012  Score=44.52  Aligned_cols=14  Identities=29%  Similarity=0.342  Sum_probs=7.6

Q ss_pred             hcCCCCcEEEEccC
Q 044585          119 RCLNNLRCLEVRNC  132 (352)
Q Consensus       119 ~~l~~L~~L~l~~~  132 (352)
                      ...++|++|++++|
T Consensus        69 ~~n~~L~~L~L~~n   82 (167)
T d1pgva_          69 ETSPSLRVLNVESN   82 (167)
T ss_dssp             HHCSSCCEEECCSS
T ss_pred             hhcccccceeeehh
Confidence            34455566665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.00  E-value=0.018  Score=43.32  Aligned_cols=88  Identities=17%  Similarity=0.014  Sum_probs=44.7

Q ss_pred             cCCcceeeccccccccccccccc-ccccccCCcceEEEecCCC----cccccCCccCCCCCcEEeecCCc-ccccccc--
Q 044585          239 FPQLKELKLSRLHKVQHLWKEND-ESNKAFANLKSLEIFECSK----LQKLVPASWHLENLEALKVSKCH-RLINLLT--  310 (352)
Q Consensus       239 ~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~~----l~~l~~~~~~~~~L~~L~l~~c~-~l~~~~~--  310 (352)
                      .++|++|++++| .++.-....+ ......++++.+++++|..    +..+...+...++|+.+++..+. .+.+...  
T Consensus        45 n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          45 NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            457777777775 3332211111 0003456777777776642    12233445567777777775442 3333211  


Q ss_pred             -ccccCccccccEEEEec
Q 044585          311 -LSTSRSLIILQSMTIAD  327 (352)
Q Consensus       311 -~~~~~~l~~L~~L~i~~  327 (352)
                       ..+....++|+.|++..
T Consensus       124 La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCCCcCEEeCcC
Confidence             11234566777777654