Citrus Sinensis ID: 044597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQLYPYGI
Secondary Structure (PSIPRED)
ccHHHHHHccccccccHHHHHHHHHHHHHccccEEEEccccccEEEEEEccHHHHHHHHHHHcccEEcccccccccEEEEEEccccccccccccccccccccEEEccccccEEcHHHHHcccccccccccccccccccccccccccccHHHHHcccccccEEEEEEcccHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEccEEEEEcccccccccEEEEcccccccEEEEcccccccccEEEEccccccccccccccccccccEEEEEcccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHccccccHHHHHHHHHHHHHHHHHHEEEEEcccccEEEEEccHHHHHHHHHHHccccEEccHHHHHHHHHHHccccccHccccHHHHHHHHHcEEEEcccccccccHHHHHHHHHHHEEEEcccccccccccccHcccccHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccEEEEEEccccccccHHHHHHcccccEEEEEEcccEEEEccccccHHEEEEEcccHHHcEEEEEccccHHHcEEEEcccHHHHHccHHHHHHHHHHEEEEccccHHHHHHHccccccccEEEEEccccc
Coil and Loop (DISEMBL)
QLYQLWIAegfipdnneAITEKYLEQLINGafvdagkrsdisrintssipgscspalltvafkgefiispimdqevrlrensiipslkslpssfLSSLLNLytlempfsyidHTADEFWKMSKLRYLNfgaitlpahpgkyslhpccsteeilgrlpnlqnlriwGDLSYYQSLLSKSLCRLSCLESLKLaneskmprrsntilaeyqfppslthlsfsnieliddpmpaleklpvLQVLKLKYLGRklacssdgfpklKVLHLKSMLWLEEWTMGikampklecviinpcahlkripEQLWCLKSLNklelwwpepklrQQLWEFedkeqygiqlypygi
Flexible Loop (DISEMBL)
QLYQLWIAegfipdnnEAITEKYLEQLINGAFVDAGKRSDISRINtssipgscspALLTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKlaneskmprrsNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLAcssdgfpklKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWefedkeqygiqlypygi
Low Complexity Region (SEG)
QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMDQEVRLREnsiipslkslpssflssllnlYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDlsyyqsllskslcrlscleslklANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQLYPYGI
Disordered region (IsUnstruct)
*LYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLA**********TILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQLYPY**
Disordered Region (DISOPRED)
QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKL***********QYGIQLYPYGI
Disordered Region (DISEMBL)
QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQLYPYGI
Disordered Region (DISPRO)
QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQLYPYGI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QLYQLWIAEGFIPDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQLYPYGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q8W4J9	908	Disease resistance protei	yes	no	0.598	0.224	0.303	2e-16
Q9FJK8	908	Probable disease resistan	no	no	0.598	0.224	0.303	7e-16
P59584	910	Disease resistance protei	no	no	0.607	0.227	0.281	9e-16
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.580	0.219	0.287	1e-14
P0C8S1	906	Probable disease resistan	no	no	0.621	0.233	0.292	5e-14
Q8W474	907	Probable disease resistan	no	no	0.621	0.233	0.312	1e-13
Q8W3K3	910	Putative disease resistan	no	no	0.659	0.247	0.297	7e-13
Q9XIF0	906	Putative disease resistan	no	no	0.636	0.239	0.311	9e-13
P0DI18	1049	Probable disease resistan	no	no	0.665	0.216	0.288	3e-12
P0DI17	1049	Probable disease resistan	no	no	0.665	0.216	0.288	3e-12

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 17/221 (7%)

Query: 95  LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154
           L  L+NL  L   FS    +  +  +M+KLRYL              SL   C+ E +  
Sbjct: 668 LGDLVNLEYL-YGFSTQHSSVTDLLRMTKLRYLAV------------SLSERCNFETLSS 714

Query: 155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLT 214
            L  L+NL     L   ++ +   +     L+      +  +  R + I  ++QFPP L 
Sbjct: 715 SLRELRNLETLNFLFSLETYMVDYMGEF-VLDHFIHLKQLGLAVRMSKIPDQHQFPPHLV 773

Query: 215 HLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDGFPKLKVLHLKSMLWLE 271
           HL      + +DPMP LEKL  L+ ++L    +LG ++ CS  GFP+L V+ +     LE
Sbjct: 774 HLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESELE 833

Query: 272 EWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL 312
           EW +   +MP L  + I+ C  LK +P+ L  + SL +L++
Sbjct: 834 EWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKI 874

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 17/221 (7%)

Query: 95  LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154
           L  L+NL  L   FS    +  +  +M+KLR  N G           SL   C+ E +  
Sbjct: 668 LGDLVNLEYL-WYFSTQHSSVTDLLRMTKLR--NLGV----------SLSERCNFETLSS 714

Query: 155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLT 214
            L  L+NL +   L   + ++   +     L+      +  +  R + I  ++QFPP L 
Sbjct: 715 SLRELRNLEMLNVLFSPEIVMVDHMGEF-VLDHFIHLKQLGLAVRMSKIPDQHQFPPHLA 773

Query: 215 HLSFSNIELIDDPMPALEKLPVLQVLKLKY---LGRKLACSSDGFPKLKVLHLKSMLWLE 271
           H+   +  + +DPMP LEKL  L+ + L Y   +GR++ CS  GFP+L  L +     LE
Sbjct: 774 HIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCALGISGESELE 833

Query: 272 EWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL 312
           EW +   +MP L  + I+ C  LK +P+ L  + SL +L++
Sbjct: 834 EWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKI 874

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 38/245 (15%)

Query: 93  SFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI 152
           + L  ++ L  L +P    D T  E   +  L YL             Y      ++   
Sbjct: 645 NVLKEMIELRYLSIPVKMDDKTKLELGDLVNLEYL-------------YGFSTQHTSVTD 691

Query: 153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLA--------------------- 191
           L R+  L+NL +     Y    LS SL  L  LE+L +                      
Sbjct: 692 LLRMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIH 751

Query: 192 -NESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKY---LGR 247
             E  +  R + I  ++QFPP L H+      + +DPMP LEKL  L+ ++L+Y   +GR
Sbjct: 752 LKELGLVVRMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGR 811

Query: 248 KLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSL 307
           ++ CS DGF +L  L +     LE+W +   +MP L  + I+ C  LK +P+ L  + SL
Sbjct: 812 RMVCSKDGFTQLCALDISKQSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSL 871

Query: 308 NKLEL 312
            +L++
Sbjct: 872 KELKI 876

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 28/226 (12%)

Query: 95  LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154
           L  L+NL  L   FS    +  +  +M+KLR+  FG           S    C+ E +  
Sbjct: 660 LGDLVNLEYL-WCFSTQHSSVTDLLRMTKLRF--FGV----------SFSERCTFENLSS 706

Query: 155 RLPNLQNLR----IWGDLSYYQSLLSKSLCRLSCLESLKLA-NESKMPRRSNTILAEYQF 209
            L   + L     I+   +Y    + + +     L+ L L  + SK+P        ++Q 
Sbjct: 707 SLRQFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIP-------DQHQL 759

Query: 210 PPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDGFPKLKVLHLKS 266
           PP + H+      + +DPMP LEKL  L+ ++L+   ++GR++ CS  GFP+L+ L +  
Sbjct: 760 PPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISE 819

Query: 267 MLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL 312
              LEEW +   +MP L  +II+ C  L+ +P+ L  + SL +L++
Sbjct: 820 QSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKI 865

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 31/243 (12%)

Query: 88  KSLPSSF---LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLH 144
           +S+P+     L  L+NL +L   FS    +  +  +M+KL  LN          G+    
Sbjct: 656 RSMPAKTKLELGDLVNLESL-TNFSTKHGSVTDLLRMTKLSVLNV------IFSGE---- 704

Query: 145 PCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANES---KMPRRSN 201
             C+ E +L  L  L+NL       + +  ++     L  L+ + L + +    +PR  +
Sbjct: 705 --CTFETLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLPRFPD 762

Query: 202 TILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDGFPK 258
               +Y+FPP L H+      + +DPMP LEKL  L+ + L    +LGR++ CS  GFP+
Sbjct: 763 ----QYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQ 818

Query: 259 LKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL---WCLKSLN--KLELW 313
           L  L +     L EW +   +MP L  + I+ C  LK++P+ L    CLK L   +++  
Sbjct: 819 LLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKIERMKRE 878

Query: 314 WPE 316
           W E
Sbjct: 879 WTE 881

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 108/253 (42%), Gaps = 41/253 (16%)

Query: 90  LPSSFLSSLLNLY-TLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGK---YSLHP 145
           LPSS  + +L +Y  L++   +I    D F +M +LRYL      LP H  K    SL  
Sbjct: 624 LPSSLGNLMLLIYLNLDVDTEFI-FVPDVFMRMHELRYLK-----LPLHMHKKTRLSLRN 677

Query: 146 CCSTEEI------------LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE 193
               E +            L  +  L  L I          LS S+  L  LE L +   
Sbjct: 678 LVKLETLVYFSTWHSSSKDLCGMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGT 737

Query: 194 SKMPRRSNTILAEY----------------QFPPSLTHLSFSNIELIDDPMPALEKLPVL 237
                R   I+ ++                 FP  LT +  S   L +DPMP LEKL  L
Sbjct: 738 HSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHL 797

Query: 238 Q---VLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHL 294
           +   +LK  Y GR++ CS  GFP+LK L +  +   EEW +   +MP LE + I  C  L
Sbjct: 798 KGVILLKGSYCGRRMVCSGGGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEEL 857

Query: 295 KRIPEQLWCLKSL 307
           K IP+ L  + SL
Sbjct: 858 KEIPDGLRFIYSL 870

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 24/249 (9%)

Query: 95  LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154
           L +L+NL TLE  FS  + + ++   M  LR L  G   L  H  K +L        ILG
Sbjct: 672 LCNLVNLETLE-NFSTENSSLEDLRGMVSLRTLTIG---LFKHISKETLFAS-----ILG 722

Query: 155 RLPNLQNLRIW--GDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPS 212
            + +L+NL I      S ++ ++   +  L  +   +L     MP+  +    E  FP  
Sbjct: 723 -MRHLENLSIRTPDGSSKFKRIMEDGIV-LDAIHLKQLNLRLYMPKLPD----EQHFPSH 776

Query: 213 LTHLSFSNIELIDDPMPALEKLPVLQVLKLKY---LGRKLACSSDGFPKLKVLHLKSMLW 269
           LT +S     L++DP+P LEKL  L+ ++L +    G+++  S  GFP+L  L++  +  
Sbjct: 777 LTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVSSDGGFPQLHRLYIWGLAE 836

Query: 270 LEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDK 329
            EEW +   +MP+L  + I  C  LK++P+ L  + S+  L++   + K ++ L E   +
Sbjct: 837 WEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDM---DKKWKEILSE-GGE 892

Query: 330 EQYGIQLYP 338
           E Y +Q  P
Sbjct: 893 EYYKVQHIP 901

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 14/231 (6%)

Query: 119 WKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW-GDLSYYQSLLSK 177
           W+ S L  L  G +        +S      T+  L R+  L+ L+I       +   LS 
Sbjct: 655 WERSSLTKLELGNLLKLETLINFSTKDSSVTD--LHRMTKLRTLQILISGEGLHMETLSS 712

Query: 178 SLCRLSCLESLKL-----ANESKMPRR-SNTILAEYQ-FPPSLTHLSFSNIELIDDPMPA 230
           +L  L  LE L +     + + K P+     +L + Q FP  LT +S     L +DPMP 
Sbjct: 713 ALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPT 772

Query: 231 LEKLPVLQVLKL---KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVI 287
           LEKL  L+V+ L    Y+GR++ C+  GFP L  L +  +  LEEW +   +MP L  + 
Sbjct: 773 LEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLH 832

Query: 288 INPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQLYP 338
           I  C  LK IP+ L  + SL +L +   E K+ Q+      ++ Y +Q  P
Sbjct: 833 IVDCKKLKEIPDGLRFISSLKELAIRTNE-KVFQKKVSKGGEDYYKMQHVP 882

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 19/246 (7%)

Query: 58  LTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE 117
           L +   G  ++  ++ +  +LR  ++   +       LS+L+ L TL+  FS  + + ++
Sbjct: 640 LVILVSGSTLVPNVLKEMQQLRYLALPKDMGRKTKLELSNLVKLETLK-NFSTKNCSLED 698

Query: 118 FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK 177
              M +LR L    I L       SL    ++   +G L  L++L I    S  ++  + 
Sbjct: 699 LRGMVRLRTL---TIELRKET---SLETLAAS---IGGLKYLESLTITDLGSEMRTKEAG 749

Query: 178 SLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVL 237
            +     L++L L  +  MPR S     E  FP  LT L   +  L +DPMP LEKL  L
Sbjct: 750 IVFDFVYLKTLTL--KLYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQL 803

Query: 238 QVLKLK---YLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHL 294
           + L+L+   + G+++ CSS GFP+L+ L +K +   E+W +   +MP L  + I  C  L
Sbjct: 804 KELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKL 863

Query: 295 KRIPEQ 300
           K++P++
Sbjct: 864 KQLPDE 869

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 19/246 (7%)

Query: 58  LTVAFKGEFIISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE 117
           L +   G  ++  ++ +  +LR  ++   +       LS+L+ L TL+  FS  + + ++
Sbjct: 640 LVILVSGSTLVPNVLKEMQQLRYLALPKDMGRKTKLELSNLVKLETLK-NFSTKNCSLED 698

Query: 118 FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK 177
              M +LR L    I L       SL    ++   +G L  L++L I    S  ++  + 
Sbjct: 699 LRGMVRLRTL---TIELRKET---SLETLAAS---IGGLKYLESLTITDLGSEMRTKEAG 749

Query: 178 SLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVL 237
            +     L++L L  +  MPR S     E  FP  LT L   +  L +DPMP LEKL  L
Sbjct: 750 IVFDFVYLKTLTL--KLYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQL 803

Query: 238 QVLKLK---YLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHL 294
           + L+L+   + G+++ CSS GFP+L+ L +K +   E+W +   +MP L  + I  C  L
Sbjct: 804 KELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKL 863

Query: 295 KRIPEQ 300
           K++P++
Sbjct: 864 KQLPDE 869

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
359496848	856	PREDICTED: disease resistance RPP8-like	0.656	0.261	0.301	2e-19
339431373	968	putative CC-NBS-LRR protein [Malus x dom	0.642	0.226	0.327	9e-19
147766035	902	hypothetical protein VITISV_038742 [Viti	0.656	0.248	0.293	1e-18
297744682	787	unnamed protein product [Vitis vinifera]	0.876	0.379	0.270	4e-18
32453353	506	resistance protein RPP8-like protein [Ar	0.598	0.403	0.307	2e-15
297808267	926	predicted protein [Arabidopsis lyrata su	0.378	0.139	0.375	2e-15
32453351	506	resistance protein RPP8-like protein [Ar	0.583	0.393	0.327	3e-15
359491404	922	PREDICTED: probable disease resistance R	0.724	0.267	0.306	3e-15
225455685	841	PREDICTED: probable disease resistance p	0.935	0.379	0.269	3e-15
296084159	607	unnamed protein product [Vitis vinifera]	0.903	0.507	0.270	4e-15

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 122/259 (47%), Gaps = 35/259 (13%)

Query: 86  SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHP------- 138
            L+ LPSS + +  NL TL++  + +     + W M  LR+L     ++  HP       
Sbjct: 569 GLQRLPSS-IQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVM 627

Query: 139 -----GKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE 193
                   S++      ++LG+L NL+ L I G  +     LS+ L +LS L++L+L   
Sbjct: 628 HLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGT 687

Query: 194 SKMPRRSNTILAEY-------------------QFPPSLTHLSFSNIELIDDPMPALEKL 234
             +   +  +L                      +  P+LT +   N  L+ D    L KL
Sbjct: 688 ELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILENSLLVQDIFVILGKL 747

Query: 235 PVLQVLKL---KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPC 291
           P LQ+LKL    + G+++ CS+ GFPKL  L L  ++ LEEW +   AMP L  +II+ C
Sbjct: 748 PNLQMLKLLINSFFGKEITCSASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLIIDHC 807

Query: 292 AHLKRIPEQLWCLKSLNKL 310
             LK+IPE    L +L +L
Sbjct: 808 DQLKKIPEGFQYLTALREL 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339431373|gb|AEJ72566.1| putative CC-NBS-LRR protein [Malus x domestica]

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 59/278 (21%)

Query: 87  LKSLPSSFLSSLLNLYTL------EMPFSYIDHTADEFWKMSKLRYL------------- 127
           +++LPSS + +L++L TL      ++ +       +  WKM +LR+L             
Sbjct: 671 IQALPSS-IGNLIHLKTLNLQTISKLSWDLTVQIPNVIWKMERLRHLYLPKWCGNAVDKL 729

Query: 128 NFGAI----TLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLL---SKSLC 180
             G +    TL   P        C  E+ L +L NL+ L +  D  +++SL+   S    
Sbjct: 730 QLGNLINLQTLVNFPANK-----CDVED-LRKLTNLRKL-VLNDPKHFKSLVIIFSPQSR 782

Query: 181 RLSCLESLKLANES-KMP-------------RRSNTILAE---------YQFPPSLTHLS 217
            LSCLESL L +E+   P             RR   +  E         +QFPP+L  L+
Sbjct: 783 TLSCLESLSLTSETLSFPDDVVDVRQLMLSCRRLQKLHVEGRIEKLPEYHQFPPNLAKLT 842

Query: 218 FSNIELIDDPMPALEKLPVLQVLK--LKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTM 275
                L +DPMP LE+LP L++L     + G+K+ CS+ GFPKLK L L+    LE+WTM
Sbjct: 843 LWGSNLEEDPMPTLERLPNLRILSGWQMFAGKKMVCSNQGFPKLKSLLLRGFSNLEDWTM 902

Query: 276 GIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELW 313
              AMP L  + I+ C  LK IP+ L  +K+L +LE++
Sbjct: 903 EEGAMPSLCRLEISSCIKLKMIPDSLRFVKTLQELEIY 940

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 35/259 (13%)

Query: 86  SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHP------- 138
            L+ LPSS + +  NL TL++  + +     + W M  LR+L     ++  HP       
Sbjct: 615 GLQRLPSS-VQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVM 673

Query: 139 -----GKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE 193
                   S++      ++LG+L NL+ L I G  +     LS+ L +LS L++L+L   
Sbjct: 674 HLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGT 733

Query: 194 SKMPRRSNTILAEY-------------------QFPPSLTHLSFSNIELIDDPMPALEKL 234
             +   +  +L                      +  P+LT +      L+ D    L KL
Sbjct: 734 ELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILEKSLLVQDIFVILGKL 793

Query: 235 PVLQVLKL---KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPC 291
           P LQ+LKL    + G+++ CS+ GFPKL  L L  ++ LEEW +   AMP L  ++I+ C
Sbjct: 794 PNLQMLKLLINSFFGKEITCSASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLVIDHC 853

Query: 292 AHLKRIPEQLWCLKSLNKL 310
             LK+IPE    L +L +L
Sbjct: 854 DQLKKIPEGFQYLTALREL 872

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744682|emb|CBI37944.3| unnamed protein product [Vitis vinifera]

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 166/384 (43%), Gaps = 85/384 (22%)

Query: 1   QLYQLWIAEGFIP----DNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPA 56
           +L ++W+AEG +     +  E + E+YL++LI    V  G+R+ I R+ T  +       
Sbjct: 381 KLMRMWVAEGIVSSVQGETAEDVAERYLDELIERCMVQVGRRNFIGRVKTCRLHDLMRDL 440

Query: 57  LLTVAFKGEFI-----------------ISPIMDQEVRLRENSI--------IPSLKSLP 91
            L+ A +  F+                 + PI+    ++R  +I          S +   
Sbjct: 441 CLSKAKEENFLQATHLRHKNDPVAASSSMVPIVTPMAKIRRLAIYLDEGVNRCISSEYEK 500

Query: 92  SSFLSSLLNLYTLE---------------MPFSYIDHTADEFW-----KMSKLRYLNFGA 131
           SS L SLL  Y  E               +P S+  + AD+        +  LR ++   
Sbjct: 501 SSHLRSLLFFYAKEVGMINWEQLKPVHLYLPKSFTINGADKLRLDSLNNLKTLRNVDARK 560

Query: 132 ITLP-----AHPGKYSLHPCCSTEEILGRLPN---------LQNLRIWG------DLSYY 171
             +       +  K  +H   S EE+   L +         L +L+IWG      DL   
Sbjct: 561 CCIKDLVKLTNLSKLGMHSVKSYEELKVILKHPSPILNSLWLLSLQIWGERVEEKDLRQL 620

Query: 172 QSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQ-FPPSLTHLSFSNIELIDDPMPA 230
            S       RLS   +L     SK+P        EY  FPP+L  L+     L++DPMP 
Sbjct: 621 FSDCHHDFYRLSLGAAL-----SKLP--------EYNSFPPNLIKLTLWGSRLVEDPMPT 667

Query: 231 LEKLPVLQVLKL--KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVII 288
           L KLP LQ L+L   Y G+++ C ++ FP+LK L + +   LE+W +   AMP L  + I
Sbjct: 668 LGKLPHLQFLRLPHTYFGKEIVCLTESFPRLKYLFISNFPKLEKWKIYDTAMPSLLELQI 727

Query: 289 NPCAHLKRIPEQLWCLKSLNKLEL 312
             C  LK++P+ L  + +L +LE+
Sbjct: 728 RRCEQLKKLPDGLRLVTTLRELEI 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32453353|gb|AAP82808.1| resistance protein RPP8-like protein [Arabidopsis thaliana]

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 17/221 (7%)

Query: 95  LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG 154
           L  L+NL  L   FS    +A +  +M+KLR+L              SL   C+ E +  
Sbjct: 293 LGDLVNLEYL-FGFSTQHTSATDLLRMTKLRHLTV------------SLSERCNFETLSS 339

Query: 155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLT 214
            L  L+NL         ++     +     L+      E  +  R + I  ++QFPP LT
Sbjct: 340 SLRELRNLETLNFFFLRETYKVDYMGEF-VLDHFIHLKELGLVVRMSKIPDQHQFPPHLT 398

Query: 215 HLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDGFPKLKVLHLKSMLWLE 271
           H+   N  + +DPMP LEKL  L+ ++L    ++GR++ CS  GFP+L  L +     LE
Sbjct: 399 HIHLFNCRMEEDPMPILEKLLHLKSVQLAVEAFVGRRMVCSKGGFPQLCALDISKESELE 458

Query: 272 EWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL 312
           EW +   +MP L  + I+ C  LK +P+ L  + SL +L++
Sbjct: 459 EWIVEEGSMPCLRILSIDDCKKLKELPDGLKYITSLKELKI 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808267|ref|XP_002872017.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297317854|gb|EFH48276.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 78/133 (58%), Gaps = 4/133 (3%)

Query: 206 EYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDGFPKLKVL 262
           E QFP  +  +S S+ +L +DPMP LEKL  L+++ L+   + GRK+ CS  GFPKL  L
Sbjct: 782 ELQFPSRIASISLSSCDLSEDPMPVLEKLHNLKIVSLELNAFTGRKMVCSKSGFPKLHTL 841

Query: 263 HLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQ 322
               +  LEEW +  ++MP L  + IN C  LK +P+ L  + +L +L + W + + + +
Sbjct: 842 EFSILDNLEEWVVEEESMPFLCRLEINDCRKLKSLPDGLKYITTLEELRVGWMQNEFKDK 901

Query: 323 LWEFEDKEQYGIQ 335
           L +  D + Y IQ
Sbjct: 902 LIQGGD-DHYKIQ 913

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32453351|gb|AAP82807.1| resistance protein RPP8-like protein [Arabidopsis thaliana]

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 27/226 (11%)

Query: 95  LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI-- 152
           L  L+NL  L   FS    +  +  +M+KLRYL              SL   C+ E +  
Sbjct: 293 LGDLVNLEYLS-GFSTQHTSVTDLLRMTKLRYL------------AVSLSERCNFETLSS 339

Query: 153 -LGRLPNLQNLRIWGDLSYYQS--LLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQF 209
            L  L NL+ L     L  Y+   +    L     L+ L+LA       R + I  E+QF
Sbjct: 340 SLRELRNLETLDFLFSLETYKVDYMGEFVLDHFIHLKGLRLA------VRMSKIPDEHQF 393

Query: 210 PPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDGFPKLKVLHLKS 266
           PP L H+   N  + +DPMP LEKL  L+ ++L    ++GR++ CS  GFP+L  L +  
Sbjct: 394 PPHLAHIYLFNCRMEEDPMPILEKLHHLKSVQLAVEAFVGRRMVCSKGGFPQLCALDISK 453

Query: 267 MLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL 312
              LEEW +   +MP L  + I+ C  LK +P+ L  + SL +L++
Sbjct: 454 ESELEEWIVEEGSMPCLRSLTIHNCKKLKELPDGLKYITSLKELKI 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 134/290 (46%), Gaps = 43/290 (14%)

Query: 87  LKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI--------TLPAHP 138
           LK LP S +  LLNL TL++  + ++      WKM KLR+L F  +        T  +  
Sbjct: 614 LKKLPPS-IQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFNELEEMAVNPPTDASLA 672

Query: 139 GKYSLHPCC-----STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE 193
              +LH  C       E  L +L NL+ L + GDL  ++  + K +     LE LKL   
Sbjct: 673 NLQTLHGICINQTSYVENGLSKLTNLRELGLHGDLLLHEEAIGKWIFSSERLECLKLHTR 732

Query: 194 SKMPRRSNTIL-------------------------AEYQFPPSLTHLSFSNIELIDDPM 228
             M   +   +                         AEY FP +LT LS     L++DPM
Sbjct: 733 DVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFDAEY-FPQNLTELSLKGSFLMEDPM 791

Query: 229 PALEKLPVLQVLKLK---YLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLEC 285
             LE L  L+VLKLK   YLG+++ CS  GFP+L  L L  +  +E W +   AM +L  
Sbjct: 792 VKLEMLQSLRVLKLKHSAYLGKEMICSCGGFPQLHFLKLSFLNTVERWRIEDGAMGRLRQ 851

Query: 286 VIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQLWEFEDKEQYGIQ 335
           + I  C  LK +P  L  + +++KL+L +   +   ++ E + +  Y I+
Sbjct: 852 LEIIECKRLKIVPRGLQPVTTIHKLKLGYMPREFEMKVQERQGENWYKIE 901

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455685|ref|XP_002265241.1| PREDICTED: probable disease resistance protein RXW24L [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 173/389 (44%), Gaps = 70/389 (17%)

Query: 1   QLYQLWIAEGFI----PDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPA 56
           +L+Q+WIAEGF+     +  E + E YLE+LIN + +   KR     I +  I G     
Sbjct: 442 KLFQMWIAEGFVQRRGEEKVEKVAEDYLEELINRSMIRVVKRKSNGGIKSCHIHGLLRDL 501

Query: 57  LLTVAFKGEFI--------ISPIMDQEV---------------RLRENSIIPSLKSLPSS 93
            ++ A   +F          SPI  + +               RLR         SL S 
Sbjct: 502 AISEAKDSKFFEVYENTDYTSPISVRRLTIPHKKEIVHHINSSRLRSLIGFVGEDSLTSC 561

Query: 94  FLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNF---GAITLPAHPGKYSLHPCCSTE 150
               LL +  +E+          E  ++ +L+Y+       + LP   G+  L    + +
Sbjct: 562 LAPKLLTVLDVELSTKLKITLPKEIGELIRLKYMRLRGGHGLRLPESIGR--LVNLQTLD 619

Query: 151 EILGRLP----NLQNLR-IWGDLSYYQSLLSK-------------SLCRLSCLESLKLA- 191
              G++P     L  LR ++G   YY ++LS+             S+  L+ L++LKLA 
Sbjct: 620 CRFGKIPWSVWRLHQLRHLYG---YYSTVLSRPMMSRCLTFNGDLSIHLLTNLQTLKLAP 676

Query: 192 ------NESKMPRRSNTILAEYQF-------PPSLTHLSFSNIELIDDPMPALEKLPVLQ 238
                    K+P+     + + +F       P +L  L+  N +L +DPM  L+KLP L+
Sbjct: 677 GPWLEDGLGKLPQLKKLRITDGRFKNSSELYPENLMKLTLQNCDLEEDPMLTLKKLPNLR 736

Query: 239 VLKL--KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKR 296
           +LKL     G K+ CSS GF +L+VL L  +  LEE  +   A+P L  + I     +K 
Sbjct: 737 ILKLMGNSCGSKMVCSSGGFLQLEVLGLHWLKKLEELKVEEGALPNLRALQIRGKIMIK- 795

Query: 297 IPEQLWCLKSLNKLELWWPEPKLRQQLWE 325
           +P+ L  L++L +L+L     +L +++ E
Sbjct: 796 VPQGLLQLENLRELKLKRVSSQLIEEVHE 824

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084159|emb|CBI24547.3| unnamed protein product [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 171/374 (45%), Gaps = 66/374 (17%)

Query: 1   QLYQLWIAEGFI----PDNNEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPA 56
           +L+Q+WIAEGF+     +  E + E YLE+LIN + +   KR     I +  I G     
Sbjct: 234 KLFQMWIAEGFVQRRGEEKVEKVAEDYLEELINRSMIRVVKRKSNGGIKSCHIHGLLRDL 293

Query: 57  LLTVAFKGEFI--------ISPIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPF 108
            ++ A   +F          SPI  + +       IP  K +        +N+  +E+  
Sbjct: 294 AISEAKDSKFFEVYENTDYTSPISVRRL------TIPHKKEIVHH-----INMLDVELST 342

Query: 109 SYIDHTADEFWKMSKLRYLNF---GAITLPAHPGKYSLHPCCSTEEILGRLP----NLQN 161
                   E  ++ +L+Y+       + LP   G+  L    + +   G++P     L  
Sbjct: 343 KLKITLPKEIGELIRLKYMRLRGGHGLRLPESIGR--LVNLQTLDCRFGKIPWSVWRLHQ 400

Query: 162 LR-IWGDLSYYQSLLSK-------------SLCRLSCLESLKLA-------NESKMPRRS 200
           LR ++G   YY ++LS+             S+  L+ L++LKLA          K+P+  
Sbjct: 401 LRHLYG---YYSTVLSRPMMSRCLTFNGDLSIHLLTNLQTLKLAPGPWLEDGLGKLPQLK 457

Query: 201 NTILAEYQF-------PPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL--KYLGRKLAC 251
              + + +F       P +L  L+  N +L +DPM  L+KLP L++LKL     G K+ C
Sbjct: 458 KLRITDGRFKNSSELYPENLMKLTLQNCDLEEDPMLTLKKLPNLRILKLMGNSCGSKMVC 517

Query: 252 SSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLE 311
           SS GF +L+VL L  +  LEE  +   A+P L  + I     +K +P+ L  L++L +L+
Sbjct: 518 SSGGFLQLEVLGLHWLKKLEELKVEEGALPNLRALQIRGKIMIK-VPQGLLQLENLRELK 576

Query: 312 LWWPEPKLRQQLWE 325
           L     +L +++ E
Sbjct: 577 LKRVSSQLIEEVHE 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.381	0.144	0.323	1.8e-14
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.407	0.153	0.335	1.7e-13
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.407	0.153	0.335	3.1e-13
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.313	0.117	0.418	2.9e-11
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.296	0.096	0.388	3.4e-11
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.296	0.096	0.388	3.4e-11
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.395	0.149	0.364	4.9e-11
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.296	0.099	0.398	1.7e-10
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.296	0.099	0.398	1.7e-10
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.304	0.091	0.387	5.8e-10

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 44/136 (32%), Positives = 77/136 (56%)

Query:   206 EYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDGFPKLKVL 262
             ++Q PP + H+      + +DPMP LEKL  L+ ++L+   ++GR++ CS  GFP+L+ L
Sbjct:   756 QHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRAL 815

Query:   263 HLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPKLRQQ 322
              +     LEEW +   +MP L  +II+ C  L+ +P+ L  + SL +L++   E   R+ 
Sbjct:   816 QISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKI---EGMKREW 872

Query:   323 LWEFEDKEQYGIQLYP 338
               +   ++ Y +Q  P
Sbjct:   873 KEKLVGEDYYKVQHIP 888

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 48/143 (33%), Positives = 80/143 (55%)

Query:   199 RSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKY---LGRKLACSSDG 255
             R + I  ++QFPP L H+   +  + +DPMP LEKL  L+ + L Y   +GR++ CS  G
Sbjct:   758 RMSKIPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGG 817

Query:   256 FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWP 315
             FP+L  L +     LEEW +   +MP L  + I+ C  LK +P+ L  + SL +L++   
Sbjct:   818 FPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREM 877

Query:   316 EPKLRQQLWEFEDKEQYGIQLYP 338
             + + +++L     ++ Y +Q  P
Sbjct:   878 KREWKEKLVP-GGEDYYKVQHIP 899

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 48/143 (33%), Positives = 80/143 (55%)

Query:   199 RSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACSSDG 255
             R + I  ++QFPP L HL      + +DPMP LEKL  L+ ++L    +LG ++ CS  G
Sbjct:   758 RMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGG 817

Query:   256 FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWP 315
             FP+L V+ +     LEEW +   +MP L  + I+ C  LK +P+ L  + SL +L++   
Sbjct:   818 FPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGM 877

Query:   316 EPKLRQQLWEFEDKEQYGIQLYP 338
             + + +++L     ++ Y +Q  P
Sbjct:   878 KREWKEKLVP-GGEDYYKVQHIP 899

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 46/110 (41%), Positives = 62/110 (56%)

Query:   206 EYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQ-VLKLK--YLGRKLACSSDGFPKLKVL 262
             +  FP  LT +  S   L +DPMP LEKL  L+ V+ LK  Y GR++ CS  GFP+LK L
Sbjct:   766 QQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQLKKL 825

Query:   263 HLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL 312
              +  +   EEW +   +MP LE + I  C  LK IP+ L  + SL  + L
Sbjct:   826 EIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSLELVML 875

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 42/108 (38%), Positives = 63/108 (58%)

Query:   196 MPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACS 252
             MPR S     E  FP  LT L   +  L +DPMP LEKL  L+ L+L+   + G+++ CS
Sbjct:   766 MPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS 821

Query:   253 SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ 300
             S GFP+L+ L +K +   E+W +   +MP L  + I  C  LK++P++
Sbjct:   822 SGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 42/108 (38%), Positives = 63/108 (58%)

Query:   196 MPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK---YLGRKLACS 252
             MPR S     E  FP  LT L   +  L +DPMP LEKL  L+ L+L+   + G+++ CS
Sbjct:   766 MPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS 821

Query:   253 SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ 300
             S GFP+L+ L +K +   E+W +   +MP L  + I  C  LK++P++
Sbjct:   822 SGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 51/140 (36%), Positives = 75/140 (53%)

Query:   203 ILAEYQ-FPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL---KYLGRKLACSSDGFPK 258
             +L + Q FP  LT +S     L +DPMP LEKL  L+V+ L    Y+GR++ C+  GFP 
Sbjct:   744 MLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPP 803

Query:   259 LKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPEPK 318
             L  L +  +  LEEW +   +MP L  + I  C  LK IP+ L  + SL +L +   E K
Sbjct:   804 LHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNE-K 862

Query:   319 LRQQLWEFEDKEQYGIQLYP 338
             + Q+      ++ Y +Q  P
Sbjct:   863 VFQKKVSKGGEDYYKMQHVP 882

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 43/108 (39%), Positives = 61/108 (56%)

Query:   196 MPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL---KYLGRKLACS 252
             MPR S     E  FP  LT L   +  L +DPMP LEKL  L+ L+L    + G+K+ CS
Sbjct:   758 MPRLST----EQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS 813

Query:   253 SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ 300
             S GFP+L+ L L  +   E+W +   +MP L  + I  C  LK++P++
Sbjct:   814 SGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 43/108 (39%), Positives = 61/108 (56%)

Query:   196 MPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL---KYLGRKLACS 252
             MPR S     E  FP  LT L   +  L +DPMP LEKL  L+ L+L    + G+K+ CS
Sbjct:   758 MPRLST----EQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS 813

Query:   253 SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ 300
             S GFP+L+ L L  +   E+W +   +MP L  + I  C  LK++P++
Sbjct:   814 SGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 43/111 (38%), Positives = 62/111 (55%)

Query:   193 ESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL---KYLGRKL 249
             E  MPR S     E  FP  LT L   +  L +DPMP LEKL  L+ L+L    + G+K+
Sbjct:   761 ELYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKM 816

Query:   250 ACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ 300
              CSS GFP+L+ L +  +   E+W +   +MP L  + I  C  LK++P++
Sbjct:   817 VCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQLPDE 867

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.67
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.59
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.36
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.32
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.29
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.16
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.65
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG4341	483	consensus F-box protein containing LRR [General fu	98.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.17
PLN03150	623	hypothetical protein; Provisional	98.15
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
PLN03150	623	hypothetical protein; Provisional	98.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.99
KOG4341	483	consensus F-box protein containing LRR [General fu	96.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.33
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.32
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.51
smart00370	26	LRR Leucine-rich repeats, outliers.	93.37
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.54
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.0
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.53

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.86  E-value=8.5e-22  Score=195.47  Aligned_cols=128  Identities=27%  Similarity=0.383  Sum_probs=95.9

Q ss_pred             ChHHHHHHcCCCCCC-----cHHHHHHHHHHHHHCCCcccccCCCCCcceecccCCcchhhHHhhhc-----cCCc----
Q 044597            1 QLYQLWIAEGFIPDN-----NEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAF-----KGEF----   66 (341)
Q Consensus         1 ~Li~~WiaeG~i~~~-----~e~~g~~~l~eL~~~~~lq~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~----   66 (341)
                      +||.||||||||++.     .+++|++|+.+|+++++++..+..  ++..+++|||..|..++.++.     ....    
T Consensus       432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~  509 (889)
T KOG4658|consen  432 KLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSD  509 (889)
T ss_pred             HHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEEC
Confidence            589999999999883     389999999999999999987765  666788888877776555433     0000    


Q ss_pred             --------------------------------------------------c--cccccCCcceeeeeccC-C-CCcccCh
Q 044597           67 --------------------------------------------------I--ISPIMDQEVRLRENSII-P-SLKSLPS   92 (341)
Q Consensus        67 --------------------------------------------------~--~~~~~~~l~~Lr~L~l~-~-~~~~lp~   92 (341)
                                                                        .  ....+..+++||+|+++ + .+.++|+
T Consensus       510 ~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  510 GVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             CcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence                                                              0  00115567778888886 2 6677888


Q ss_pred             hhhhcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597           93 SFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        93 ~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~  131 (341)
                      +| ++|.+||||+++++.+..+|.++++|++|.+|++..
T Consensus       590 ~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  590 SI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             HH-hhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence            88 888888888888888888888888888888888776

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=1e-19  Score=187.36  Aligned_cols=239  Identities=17%  Similarity=0.205  Sum_probs=114.3

Q ss_pred             ccccCCcceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCcccc-----------------------ccchhhccccc
Q 044597           69 SPIMDQEVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYID-----------------------HTADEFWKMSK  123 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-----------------------~lp~~i~~L~~  123 (341)
                      .+.+..+++|++|+++ +.+. .+|..+|.++++|++|++++|.+.                       .+|..++.+++
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence            3445666777777776 3443 567666556666666666666432                       33444445555


Q ss_pred             CceeeecCc----CCCCCC------ceEEeCC-----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEE
Q 044597          124 LRYLNFGAI----TLPAHP------GKYSLHP-----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESL  188 (341)
Q Consensus       124 L~~L~l~~~----~lp~~i------~~~~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L  188 (341)
                      |++|+++++    .+|..+      +.+.+++     .. +.. ++++++|+.|+++++.  ....+|..++.+++|+.|
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRE-LGQMKSLKWIYLGYNN--LSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChH-HcCcCCccEEECcCCc--cCCcCChhHhcCCCCCEE
Confidence            555555441    122211      2222211     11 222 4444444444444432  122333344444444444


Q ss_pred             EEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEe
Q 044597          189 KLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLK  265 (341)
Q Consensus       189 ~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~  265 (341)
                      ++++|.    ..+.+| .++.+ ++|+.|++++|.+....+..+..+++|++|+++.+.  ...+.....+++|++|++.
T Consensus       242 ~L~~n~----l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        242 DLVYNN----LTGPIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             ECcCce----eccccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            444441    112334 44444 444555554444433333344444555555441111  1112222345556666655


Q ss_pred             cCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          266 SMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       266 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      ++.-....+...+.+++|+.|.+.+|...+.+|..++.+++|+.|++++|.
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            543333334444556677777777776444566666667777777776664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=2.8e-19  Score=184.12  Aligned_cols=231  Identities=20%  Similarity=0.235  Sum_probs=182.2

Q ss_pred             cceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCccc-cccchhhcccccCceeeecCc----CCCCCC------ceE
Q 044597           75 EVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYI-DHTADEFWKMSKLRYLNFGAI----TLPAHP------GKY  141 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~-~~lp~~i~~L~~L~~L~l~~~----~lp~~i------~~~  141 (341)
                      +.+|++|+++ +.+. .+|..+ +++++|++|++++|.+ ..+|..++++++|++|+++++    .+|..+      +.+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             cCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            4555666665 2343 577777 9999999999999965 477888999999999999873    345444      455


Q ss_pred             EeCC-----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCC-ccCc-ccccccCCcc
Q 044597          142 SLHP-----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRS-NTIL-AEYQFPPSLT  214 (341)
Q Consensus       142 ~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l-~~lp-~~~~lp~~L~  214 (341)
                      .+++     .. +.. ++++++|++|++++|.  ....+|..++++++|+.|++++|     .+ +.+| ++..+ ++|+
T Consensus       218 ~L~~n~l~~~~-p~~-l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n-----~l~~~~p~~l~~l-~~L~  287 (968)
T PLN00113        218 YLGYNNLSGEI-PYE-IGGLTSLNHLDLVYNN--LTGPIPSSLGNLKNLQYLFLYQN-----KLSGPIPPSIFSL-QKLI  287 (968)
T ss_pred             ECcCCccCCcC-Chh-HhcCCCCCEEECcCce--eccccChhHhCCCCCCEEECcCC-----eeeccCchhHhhc-cCcC
Confidence            5543     34 556 9999999999999886  44577889999999999999998     45 4578 88899 9999


Q ss_pred             EEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCC
Q 044597          215 HLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCA  292 (341)
Q Consensus       215 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~  292 (341)
                      .|++++|.+....+..+..+++|+.|++..+.  ...+.....+++|+.|+++++.-...++...+.+++|+.|++++|.
T Consensus       288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            99999999876777778999999999993222  2333445678999999999876555677777789999999999998


Q ss_pred             CCCccccccCCCCCCcEEEEecCC
Q 044597          293 HLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       293 ~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      ....+|..+..+++|+.|++.+|.
T Consensus       368 l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        368 LTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             eEeeCChhHhCcCCCCEEECcCCE
Confidence            656788888889999999999876

>PLN03210 Resistant to P

Probab=99.77  E-value=4.7e-18  Score=176.42  Aligned_cols=205  Identities=23%  Similarity=0.258  Sum_probs=138.8

Q ss_pred             CCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEE
Q 044597           86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW  165 (341)
Q Consensus        86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~  165 (341)
                      .++.+|..+  ...+|+.|+++++.+..+|.++..+++|++|++++...-          .. +++ ++.+++|++|++.
T Consensus       600 ~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l----------~~-ip~-ls~l~~Le~L~L~  665 (1153)
T PLN03210        600 PLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL----------KE-IPD-LSMATNLETLKLS  665 (1153)
T ss_pred             CCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc----------Cc-CCc-cccCCcccEEEec
Confidence            344455444  345666666666666666666666666776666651100          22 455 7788899999998


Q ss_pred             eecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEE
Q 044597          166 GDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKY  244 (341)
Q Consensus       166 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  244 (341)
                      +|.  ....+|..++.+++|+.|++++|.    .++.+| .+ .+ ++|+.|++++|.. ...++.  ..++|++|++..
T Consensus       666 ~c~--~L~~lp~si~~L~~L~~L~L~~c~----~L~~Lp~~i-~l-~sL~~L~Lsgc~~-L~~~p~--~~~nL~~L~L~~  734 (1153)
T PLN03210        666 DCS--SLVELPSSIQYLNKLEDLDMSRCE----NLEILPTGI-NL-KSLYRLNLSGCSR-LKSFPD--ISTNISWLDLDE  734 (1153)
T ss_pred             CCC--CccccchhhhccCCCCEEeCCCCC----CcCccCCcC-CC-CCCCEEeCCCCCC-cccccc--ccCCcCeeecCC
Confidence            876  567788888889999999998877    777787 43 56 7777777777752 111111  123444444411


Q ss_pred             eC-cEee------------------------------ecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCC
Q 044597          245 LG-RKLA------------------------------CSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAH  293 (341)
Q Consensus       245 ~~-~~~~------------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~  293 (341)
                      +. ..++                              .....+++|+.|++++++.+..+|...+.+++|+.|++.+|..
T Consensus       735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~  814 (1153)
T PLN03210        735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN  814 (1153)
T ss_pred             CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence            11 0000                              0112356888999998888888888888899999999999999


Q ss_pred             CCccccccCCCCCCcEEEEecCC
Q 044597          294 LKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       294 l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      ++.+|.++ ++++|+.|++++|.
T Consensus       815 L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        815 LETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             cCeeCCCC-CccccCEEECCCCC
Confidence            99999776 68899999999986

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=6.9e-21  Score=174.93  Aligned_cols=233  Identities=19%  Similarity=0.244  Sum_probs=165.7

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC--------cCCCCCC--
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA--------ITLPAHP--  138 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~--------~~lp~~i--  138 (341)
                      ..+...+++.+|+++ ++|.++|.++|-+|.-|-+||||+|.++.+|+.+..|.+|++|+|++        ..+|.--  
T Consensus       120 ~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL  199 (1255)
T KOG0444|consen  120 TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSL  199 (1255)
T ss_pred             hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhh
Confidence            345556677788887 68899999988999999999999999999999999999999999988        2233211  


Q ss_pred             ceEEeCC------CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccC
Q 044597          139 GKYSLHP------CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPP  211 (341)
Q Consensus       139 ~~~~~~~------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~  211 (341)
                      ..+.+++      ++ |.. +..+.||+.++++.|   ....+|..+-.+.+|+.|++++|     .++++. ..+.. .
T Consensus       200 ~vLhms~TqRTl~N~-Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N-----~iteL~~~~~~W-~  268 (1255)
T KOG0444|consen  200 SVLHMSNTQRTLDNI-PTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN-----KITELNMTEGEW-E  268 (1255)
T ss_pred             hhhhcccccchhhcC-CCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC-----ceeeeeccHHHH-h
Confidence            2222222      33 444 555566666666655   45556666666666666666666     566665 44555 6


Q ss_pred             CccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC---cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEE
Q 044597          212 SLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG---RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVII  288 (341)
Q Consensus       212 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l  288 (341)
                      +|++|+++.|++ ...+.++++++.|+.|.++.+.   +-++...+.+..|+.+...+ +.++-.|...+.+++|+.|.+
T Consensus       269 ~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  269 NLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc
Confidence            677777777765 2334467777777777773222   22344556677777777776 678888888889999999999


Q ss_pred             ecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          289 NPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       289 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +.++ +-.+|.+|.-++-|+.|++..+|
T Consensus       347 ~~Nr-LiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  347 DHNR-LITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             cccc-eeechhhhhhcCCcceeeccCCc
Confidence            9888 77899999999999999999988

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.69  E-value=6.6e-19  Score=162.05  Aligned_cols=226  Identities=18%  Similarity=0.209  Sum_probs=121.4

Q ss_pred             cccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhh-cccccCceeeecCcCCCCCCceEEeCC
Q 044597           68 ISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEF-WKMSKLRYLNFGAITLPAHPGKYSLHP  145 (341)
Q Consensus        68 ~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~  145 (341)
                      +++.+..+.-|..|+++ +.+++.|..+ .+-+++-+|+||+|+|+.+|.++ .+|.-|-+|||+++++-          
T Consensus        95 iP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe----------  163 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE----------  163 (1255)
T ss_pred             CCchhcccccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh----------
Confidence            34455556666666666 5666666666 66666666666666666666553 46666666666663221          


Q ss_pred             CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC-CCCCCCCccCc-ccccccCCccEEEEEeecC
Q 044597          146 CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE-SKMPRRSNTIL-AEYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       146 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l  223 (341)
                      .. |+. +..+.+|++|.+++|..  ...-..-+..+++|+.|.+++. .    .+..+| .+..+ .+|..++++.|.+
T Consensus       164 ~L-PPQ-~RRL~~LqtL~Ls~NPL--~hfQLrQLPsmtsL~vLhms~TqR----Tl~N~Ptsld~l-~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  164 ML-PPQ-IRRLSMLQTLKLSNNPL--NHFQLRQLPSMTSLSVLHMSNTQR----TLDNIPTSLDDL-HNLRDVDLSENNL  234 (1255)
T ss_pred             hc-CHH-HHHHhhhhhhhcCCChh--hHHHHhcCccchhhhhhhcccccc----hhhcCCCchhhh-hhhhhccccccCC
Confidence            33 455 55666666666665531  1111122344555555555552 2    334455 55556 6666666666654


Q ss_pred             CCCCCccCcCCCCCCeEEE-EEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCC-CCCcccccc
Q 044597          224 IDDPMPALEKLPVLQVLKL-KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCA-HLKRIPEQL  301 (341)
Q Consensus       224 ~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~-~l~~lp~~l  301 (341)
                       ...+..+.++++|+.|++ ++...++....+...+|++|+++. +.+..+|.....+++|+.|.+.++. ....+|++|
T Consensus       235 -p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI  312 (1255)
T KOG0444|consen  235 -PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI  312 (1255)
T ss_pred             -CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccch
Confidence             233344555666666666 222233333344455556666555 4455555555555555555555544 233355555


Q ss_pred             CCCCCCcEEEEecC
Q 044597          302 WCLKSLNKLELWWP  315 (341)
Q Consensus       302 ~~l~~L~~L~l~~~  315 (341)
                      +.+.+|+.+...++
T Consensus       313 GKL~~Levf~aanN  326 (1255)
T KOG0444|consen  313 GKLIQLEVFHAANN  326 (1255)
T ss_pred             hhhhhhHHHHhhcc
Confidence            55555555554443

>PLN03210 Resistant to P

Probab=99.68  E-value=2e-16  Score=164.40  Aligned_cols=59  Identities=22%  Similarity=0.271  Sum_probs=46.4

Q ss_pred             CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      .+|++|++.+ +.++.+|...+.+++|+.|++.+|++++.+|..+..+++|+.+++++|+
T Consensus       846 ~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        846 TNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            3455555554 3455566566778999999999999999999888889999999999998

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.67  E-value=8.9e-20  Score=159.64  Aligned_cols=232  Identities=18%  Similarity=0.179  Sum_probs=187.3

Q ss_pred             cccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC---cCCCCCC-----
Q 044597           68 ISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA---ITLPAHP-----  138 (341)
Q Consensus        68 ~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~---~~lp~~i-----  138 (341)
                      ..+.+..+..+.+|.+. +.+.++|.+| +.+..+..|+.++|++..+|..++.+.+|+.|+.++   .++|+++     
T Consensus        60 l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   60 LREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             ccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence            34456667777788777 6788888888 888888888888888888888888888888888887   5666666     


Q ss_pred             -ceEEeCC----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCC
Q 044597          139 -GKYSLHP----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPS  212 (341)
Q Consensus       139 -~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~  212 (341)
                       ......+    .. |++ +.++.+|.+|.+.++   ...++|+..-+++.|++|+...+     .++.+| .++.+ .+
T Consensus       139 l~dl~~~~N~i~sl-p~~-~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N-----~L~tlP~~lg~l-~~  207 (565)
T KOG0472|consen  139 LEDLDATNNQISSL-PED-MVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSN-----LLETLPPELGGL-ES  207 (565)
T ss_pred             hhhhhccccccccC-chH-HHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchh-----hhhcCChhhcch-hh
Confidence             1111111    34 555 888888888888887   67778877777999999998887     889999 99999 99


Q ss_pred             ccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcE-eeec-CCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEec
Q 044597          213 LTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRK-LACS-SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINP  290 (341)
Q Consensus       213 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  290 (341)
                      |..|++..|.+  ..+|.|+.+..|++|+++.+..+ ++.. ...++++..|++++ +++++.|.++.-+.+|++|++++
T Consensus       208 L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  208 LELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN  284 (565)
T ss_pred             hHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC
Confidence            99999999997  44558999999999999444322 2222 23689999999998 78999999998899999999999


Q ss_pred             CCCCCccccccCCCCCCcEEEEecCC
Q 044597          291 CAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       291 c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +. +..+|..++++ .|+.|.+.|+|
T Consensus       285 N~-is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  285 ND-ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             Cc-cccCCcccccc-eeeehhhcCCc
Confidence            99 89999999999 99999999999

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.63  E-value=9e-18  Score=147.18  Aligned_cols=136  Identities=24%  Similarity=0.207  Sum_probs=89.0

Q ss_pred             hhHHHHHhcCCCCCCEE-EEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEe
Q 044597          172 QSLLSKSLCRLSCLESL-KLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKL  249 (341)
Q Consensus       172 ~~~l~~~l~~l~~L~~L-~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  249 (341)
                      ..++|..+..++.+.+. .++.+     .++-+| .+..+ ++|..|++++|.+ ...+..++.+-.|+.|+++++.-..
T Consensus       400 L~elPk~L~~lkelvT~l~lsnn-----~isfv~~~l~~l-~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~  472 (565)
T KOG0472|consen  400 LCELPKRLVELKELVTDLVLSNN-----KISFVPLELSQL-QKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRM  472 (565)
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcC-----ccccchHHHHhh-hcceeeecccchh-hhcchhhhhhhhhheeccccccccc
Confidence            44555554444444332 23333     444455 67778 8888888888886 3444467777778888885542111


Q ss_pred             ee-cCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          250 AC-SSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       250 ~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      .. ..-....++.+-.++ ..+.+++.+ ...|.+|.+|++.++. +..+|+.++++++|++|+++|+|
T Consensus       473 lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  473 LPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             chHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence            11 111122333333333 556666654 6689999999999998 88999999999999999999999

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.59  E-value=7e-17  Score=147.67  Aligned_cols=232  Identities=20%  Similarity=0.234  Sum_probs=109.4

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcC--------------
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAIT--------------  133 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~--------------  133 (341)
                      +.++.-.++.+|++. +.|+.+-..-|..+.+|.+|.|+.|.+..+|. .|.+|++|+.|+|..+.              
T Consensus       167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S  246 (873)
T KOG4194|consen  167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS  246 (873)
T ss_pred             CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence            445555666666666 45666655555666666666666666666654 34446666666666511              


Q ss_pred             -------------CCCCC-------ceEEeCCCc--chhh-hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEE
Q 044597          134 -------------LPAHP-------GKYSLHPCC--STEE-ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKL  190 (341)
Q Consensus       134 -------------lp~~i-------~~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l  190 (341)
                                   +.+|.       .++++.-+.  .+.+ .+-.++.|+.|+++.|....+  -+++.+..++|++|++
T Consensus       247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri--h~d~WsftqkL~~LdL  324 (873)
T KOG4194|consen  247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI--HIDSWSFTQKLKELDL  324 (873)
T ss_pred             hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee--ecchhhhcccceeEec
Confidence                         11111       111111110  0000 123344444444444431111  1122334455555555


Q ss_pred             EeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEe-----eecCCCCCcccEEE
Q 044597          191 ANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKL-----ACSSDGFPKLKVLH  263 (341)
Q Consensus       191 ~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~  263 (341)
                      +.|     .+++++  .+..+ +.|+.|+|+.|.+....-.+|..+.+|+.|+|..+...+     .....++++|++|.
T Consensus       325 s~N-----~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  325 SSN-----RITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ccc-----ccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            555     555554  44455 555555555555433333344555555555551111111     11223456666666


Q ss_pred             EecCCCCCceeec-CCCCCcccEEEEecCCCCCcc-ccccCCCCCCcEEEE
Q 044597          264 LKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRI-PEQLWCLKSLNKLEL  312 (341)
Q Consensus       264 l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l  312 (341)
                      +.+ ++++.++.. ...++.|+.|++.+++ +.++ |..+..+ .|++|.+
T Consensus       399 l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  399 LTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             ecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccc-hhhhhhh
Confidence            665 455555522 2245666666666666 3332 4444444 5555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.56  E-value=1.7e-15  Score=138.75  Aligned_cols=217  Identities=21%  Similarity=0.244  Sum_probs=121.4

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      +.|+++ +.+..+.-..|.++++|+.+++.+|.+..+|.......+|+.|+|.++.++.         -. -++ +..++
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s---------v~-se~-L~~l~  149 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS---------VT-SEE-LSALP  149 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccc---------cc-HHH-HHhHh
Confidence            456666 4566665555677888888888888777777766666777777777755552         11 333 66666


Q ss_pred             CCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597          158 NLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL  234 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l  234 (341)
                      .|+.|+++.|   .+..++. ++..-.++++|++++|     .++.+-  .+..+ .+|..|.|+.|.++..+...|.++
T Consensus       150 alrslDLSrN---~is~i~~~sfp~~~ni~~L~La~N-----~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L  220 (873)
T KOG4194|consen  150 ALRSLDLSRN---LISEIPKPSFPAKVNIKKLNLASN-----RITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRL  220 (873)
T ss_pred             hhhhhhhhhc---hhhcccCCCCCCCCCceEEeeccc-----ccccccccccccc-chheeeecccCcccccCHHHhhhc
Confidence            6666666655   3444432 2444456666666665     555554  45556 566666666666655555556666


Q ss_pred             CCCCeEEEEEeCcEee--ecCCCCCcccEEEEecC-----------------------CCCCceee-cCCCCCcccEEEE
Q 044597          235 PVLQVLKLKYLGRKLA--CSSDGFPKLKVLHLKSM-----------------------LWLEEWTM-GIKAMPKLECVII  288 (341)
Q Consensus       235 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~-----------------------~~l~~~~~-~~~~l~~L~~L~l  288 (341)
                      |.|+.|+|..+..++.  ....++++|+.|.+...                       +++..+.. +...+++|+.|++
T Consensus       221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence            6666666632222221  22334555555554431                       22222211 1123566666666


Q ss_pred             ecCCCCCcc-ccccCCCCCCcEEEEecCC
Q 044597          289 NPCAHLKRI-PEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       289 ~~c~~l~~l-p~~l~~l~~L~~L~l~~~~  316 (341)
                      +++. +.++ +++-...++|++|+++++.
T Consensus       301 S~Na-I~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  301 SYNA-IQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             chhh-hheeecchhhhcccceeEeccccc
Confidence            6665 3332 3333445666666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.43  E-value=1.9e-15  Score=144.85  Aligned_cols=216  Identities=22%  Similarity=0.243  Sum_probs=128.5

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG  154 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~  154 (341)
                      .++.+++++ +++..+|+.+ +.+.+|+.++..+|.+..+|..+..+.+|++|.+..+.+.          -. ++. .+
T Consensus       241 ~nl~~~dis~n~l~~lp~wi-~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~----------yi-p~~-le  307 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWI-GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE----------YI-PPF-LE  307 (1081)
T ss_pred             ccceeeecchhhhhcchHHH-HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh----------hC-CCc-cc
Confidence            456777776 6778888777 8888888888888888888888888888888877763332          22 333 56


Q ss_pred             CCCCCceEEEEeecchhhhHHHHHh-cCCC-CCCEEEEEeCCCCCCCCccCc-cc-ccccCCccEEEEEeecCCCCCCcc
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSKSL-CRLS-CLESLKLANESKMPRRSNTIL-AE-YQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~-~L~~L~l~~~~e~~~~l~~lp-~~-~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      .++.|++|++..+   ....+|..+ .-.. .|+.|+.+.+     .+..+| +- ..+ +.|+.|.+.+|.++...++.
T Consensus       308 ~~~sL~tLdL~~N---~L~~lp~~~l~v~~~~l~~ln~s~n-----~l~~lp~~~e~~~-~~Lq~LylanN~Ltd~c~p~  378 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSN---NLPSLPDNFLAVLNASLNTLNVSSN-----KLSTLPSYEENNH-AALQELYLANNHLTDSCFPV  378 (1081)
T ss_pred             ccceeeeeeehhc---cccccchHHHhhhhHHHHHHhhhhc-----cccccccccchhh-HHHHHHHHhcCcccccchhh
Confidence            6788888888776   344444432 1111 2444444444     445555 21 234 56667777777776666777


Q ss_pred             CcCCCCCCeEEEEEeCc--EeeecCCCCCcccEEEEecCCCCCceeecC----------------------CCCCcccEE
Q 044597          231 LEKLPVLQVLKLKYLGR--KLACSSDGFPKLKVLHLKSMLWLEEWTMGI----------------------KAMPKLECV  286 (341)
Q Consensus       231 l~~l~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----------------------~~l~~L~~L  286 (341)
                      +..+++|+.|+++|+..  -.......++.|+.|++++ ++++.++...                      ..++.|+.+
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l  457 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL  457 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence            77777777777755521  1112233556666666666 4455554443                      345556666


Q ss_pred             EEecCCCCCc--cccccCCCCCCcEEEEecCC
Q 044597          287 IINPCAHLKR--IPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       287 ~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +++.|. +..  +|..... ++|++|+++|+.
T Consensus       458 DlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  458 DLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             ecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence            665444 333  2221111 566666666666

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=5.6e-13  Score=130.62  Aligned_cols=75  Identities=21%  Similarity=0.066  Sum_probs=52.4

Q ss_pred             CCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEec
Q 044597          235 PVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWW  314 (341)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  314 (341)
                      .+|+.|+++.+...  ......++|+.|++++ +.+..+|..   +.+|+.|++.+|. ++.+|..+.++++|+.|++++
T Consensus       382 ~~L~~LdLs~N~Lt--~LP~l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        382 SGLKELIVSGNRLT--SLPVLPSELKELMVSG-NRLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cccceEEecCCccc--CCCCcccCCCEEEccC-CcCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCC
Confidence            45677777332211  1112346788888887 346666532   4568888998887 888999899999999999999


Q ss_pred             CC
Q 044597          315 PE  316 (341)
Q Consensus       315 ~~  316 (341)
                      |+
T Consensus       455 N~  456 (788)
T PRK15387        455 NP  456 (788)
T ss_pred             CC
Confidence            98

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=5.1e-15  Score=115.96  Aligned_cols=160  Identities=22%  Similarity=0.307  Sum_probs=98.7

Q ss_pred             CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597           74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      .+.++..|.++ +++..+|+.| ..|++|++|++++|.++++|.++..|++|+.|++..                     
T Consensus        31 ~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgm---------------------   88 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM---------------------   88 (264)
T ss_pred             chhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecch---------------------
Confidence            34444555555 5666666666 666666666666666666666666666666665432                     


Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc--cCc-ccccccCCccEEEEEeecCCCCCCc
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN--TIL-AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~--~lp-~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                                    +   ....+|.+++.++.|+.|++.++     .+.  .+| .+..+ ..|+.|.+++|.+ ...++
T Consensus        89 --------------n---rl~~lprgfgs~p~levldltyn-----nl~e~~lpgnff~m-~tlralyl~dndf-e~lp~  144 (264)
T KOG0617|consen   89 --------------N---RLNILPRGFGSFPALEVLDLTYN-----NLNENSLPGNFFYM-TTLRALYLGDNDF-EILPP  144 (264)
T ss_pred             --------------h---hhhcCccccCCCchhhhhhcccc-----ccccccCCcchhHH-HHHHHHHhcCCCc-ccCCh
Confidence                          1   33455667777888888888776     332  366 55566 7777788887775 33444


Q ss_pred             cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCC
Q 044597          230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWC  303 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~  303 (341)
                      .++++++|+.|.+                      ++ +.+-++|.++|.++.|++|+|.+++ +..+|+.+++
T Consensus       145 dvg~lt~lqil~l----------------------rd-ndll~lpkeig~lt~lrelhiqgnr-l~vlppel~~  194 (264)
T KOG0617|consen  145 DVGKLTNLQILSL----------------------RD-NDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPELAN  194 (264)
T ss_pred             hhhhhcceeEEee----------------------cc-CchhhCcHHHHHHHHHHHHhcccce-eeecChhhhh
Confidence            5666666666655                      32 2344555556666667777777666 6666665554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.36  E-value=7.1e-15  Score=115.15  Aligned_cols=154  Identities=18%  Similarity=0.206  Sum_probs=125.8

Q ss_pred             hhhccCCcccccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCC
Q 044597           59 TVAFKGEFIISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAH  137 (341)
Q Consensus        59 ~~~~~~~~~~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~  137 (341)
                      ..+.+.-..++|.+..+.+|.+|++. +.++++|.+| +++++|+.|+++-|.+..+|.+|+.++.|+.||+.++.+.  
T Consensus        39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~--  115 (264)
T KOG0617|consen   39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN--  115 (264)
T ss_pred             hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccccccc--
Confidence            34444455677899999999999998 5899999999 9999999999999999999999999999999999983222  


Q ss_pred             CceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEE
Q 044597          138 PGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHL  216 (341)
Q Consensus       138 i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L  216 (341)
                             ...-|-. +-.|+-|+.|+++++   +.+.+|..++.+++|+.|.+..+     .+-++| .++.+ ..|+.|
T Consensus       116 -------e~~lpgn-ff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrdn-----dll~lpkeig~l-t~lrel  178 (264)
T KOG0617|consen  116 -------ENSLPGN-FFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRDN-----DLLSLPKEIGDL-TRLREL  178 (264)
T ss_pred             -------cccCCcc-hhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeeccC-----chhhCcHHHHHH-HHHHHH
Confidence                   1220223 556778888999988   78899999999999999999988     777889 88999 999999


Q ss_pred             EEEeecCCCCCCccCcC
Q 044597          217 SFSNIELIDDPMPALEK  233 (341)
Q Consensus       217 ~l~~~~l~~~~~~~l~~  233 (341)
                      ++.+|.++ ..++.+++
T Consensus       179 hiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELAN  194 (264)
T ss_pred             hcccceee-ecChhhhh
Confidence            99999973 33334444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=4.6e-13  Score=131.68  Aligned_cols=56  Identities=16%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccccc----CCCCCCcEEEEecCC
Q 044597          257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL----WCLKSLNKLELWWPE  316 (341)
Q Consensus       257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~~~~  316 (341)
                      ++|++|+++++ .+..+|...  .++|+.|++++|. +..+|..+    ..++++..|++.++|
T Consensus       367 ~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        367 PTITTLDVSRN-ALTNLPENL--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence            45666666653 344444332  1346666666655 55555433    234666777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.32  E-value=1.2e-14  Score=139.50  Aligned_cols=214  Identities=19%  Similarity=0.200  Sum_probs=155.2

Q ss_pred             ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCC---CCCC------
Q 044597           69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITL---PAHP------  138 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~l---p~~i------  138 (341)
                      ...+..+.+|..+..+ +.+.++|..+ ....+|++|++..|.++.+|.....++.|++|+|..+.+   |+..      
T Consensus       257 p~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  257 PEWIGACANLEALNANHNRLVALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             hHHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence            3567788899999998 6889999999 999999999999999999999999999999999998433   3321      


Q ss_pred             --ceEEeCCCc--chhh-hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccC
Q 044597          139 --GKYSLHPCC--STEE-ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPP  211 (341)
Q Consensus       139 --~~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~  211 (341)
                        ..+..+...  ..+. +=..++.|+.|++.+|.  ..+.....+.+.++|+.|++++|     ++..+|  .+.++ +
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLsyN-----rL~~fpas~~~kl-e  407 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLSYN-----RLNSFPASKLRKL-E  407 (1081)
T ss_pred             HHHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeeccc-----ccccCCHHHHhch-H
Confidence              111111110  0011 01134457778888776  44455567888999999999998     899999  67888 8


Q ss_pred             CccEEEEEeecCCCCCCccCcCCCCCCeEEE-EEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCC-CcccEEEEe
Q 044597          212 SLTHLSFSNIELIDDPMPALEKLPVLQVLKL-KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAM-PKLECVIIN  289 (341)
Q Consensus       212 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~  289 (341)
                      .|+.|++++|+++..+ ..+..++.|++|.. ++....++ ....++.|+.++++. +++.........- |+|++|+++
T Consensus       408 ~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlS  484 (1081)
T KOG0618|consen  408 ELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLS  484 (1081)
T ss_pred             HhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeecc
Confidence            9999999999974433 56778888888887 33333333 566788889998885 6677665433322 789999999


Q ss_pred             cCCCC
Q 044597          290 PCAHL  294 (341)
Q Consensus       290 ~c~~l  294 (341)
                      +|..+
T Consensus       485 GN~~l  489 (1081)
T KOG0618|consen  485 GNTRL  489 (1081)
T ss_pred             CCccc
Confidence            88853

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.29  E-value=1.5e-12  Score=128.02  Aligned_cols=198  Identities=20%  Similarity=0.222  Sum_probs=131.7

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG  154 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~  154 (341)
                      .+++.|++. ++++.+|..+ .  .+|++|++++|.+..+|..+.  .+|+.|+++++.+.          .+ +.. +.
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l-~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~----------~L-P~~-l~  261 (754)
T PRK15370        199 EQITTLILDNNELKSLPENL-Q--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT----------EL-PER-LP  261 (754)
T ss_pred             cCCcEEEecCCCCCcCChhh-c--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC----------cC-Chh-Hh
Confidence            367788887 5888899877 3  478999999998888887654  47888888884433          22 223 32


Q ss_pred             CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcC
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEK  233 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  233 (341)
                        ++|+.|++++|   ....+|..+.  ++|+.|++++|     .++.+| .+   |++|+.|++++|.++..+. .  .
T Consensus       262 --s~L~~L~Ls~N---~L~~LP~~l~--~sL~~L~Ls~N-----~Lt~LP~~l---p~sL~~L~Ls~N~Lt~LP~-~--l  323 (754)
T PRK15370        262 --SALQSLDLFHN---KISCLPENLP--EELRYLSVYDN-----SIRTLPAHL---PSGITHLNVQSNSLTALPE-T--L  323 (754)
T ss_pred             --CCCCEEECcCC---ccCccccccC--CCCcEEECCCC-----ccccCcccc---hhhHHHHHhcCCccccCCc-c--c
Confidence              46888888876   3445665443  57888888887     777777 32   3678888888888643221 1  2


Q ss_pred             CCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEE
Q 044597          234 LPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLEL  312 (341)
Q Consensus       234 l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  312 (341)
                      .++|+.|+++++. ..++  ..-.++|+.|+++++ .+..+|...  .++|+.|++++|. +..+|..+.  ++|+.|++
T Consensus       324 ~~sL~~L~Ls~N~Lt~LP--~~l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdL  395 (754)
T PRK15370        324 PPGLKTLEAGENALTSLP--ASLPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQA  395 (754)
T ss_pred             cccceeccccCCccccCC--hhhcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhh
Confidence            3578888773332 1111  122368888888874 466665432  3678888888886 777776553  36777777


Q ss_pred             ecCC
Q 044597          313 WWPE  316 (341)
Q Consensus       313 ~~~~  316 (341)
                      ++|.
T Consensus       396 s~N~  399 (754)
T PRK15370        396 SRNN  399 (754)
T ss_pred             ccCC
Confidence            7765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.20  E-value=1.2e-10  Score=114.49  Aligned_cols=47  Identities=19%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~  131 (341)
                      ..|+++ +.++++|..+ .  ++|+.|++++|.+..+|.   .+++|++|++++
T Consensus       204 ~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~  251 (788)
T PRK15387        204 AVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG  251 (788)
T ss_pred             cEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCC---CCCCCcEEEecC
Confidence            345555 3666677666 3  356667777776666664   245666666666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.16  E-value=6.8e-12  Score=113.12  Aligned_cols=224  Identities=23%  Similarity=0.181  Sum_probs=135.8

Q ss_pred             CCcceeeeeccC-CCC-----cccChhhhhcCCCccEEecCCccccc-------cchhhcccccCceeeecCcCCCCCCc
Q 044597           73 DQEVRLRENSII-PSL-----KSLPSSFLSSLLNLYTLEMPFSYIDH-------TADEFWKMSKLRYLNFGAITLPAHPG  139 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~-----~~lp~~if~~L~~L~~L~Ls~~~~~~-------lp~~i~~L~~L~~L~l~~~~lp~~i~  139 (341)
                      ..+.+++.+++. +.+     ..++..+ ...+.+++|+++++.+..       ++..+..+++|+.|++++..+..   
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---   95 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP---   95 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh---
Confidence            334457777776 244     3455556 777778888888775542       34456677788888887732210   


Q ss_pred             eEEeCCCcchhhhhCCC---CCCceEEEEeecch--hhhHHHHHhcCC-CCCCEEEEEeCCCCCCCCc-----cCc-ccc
Q 044597          140 KYSLHPCCSTEEILGRL---PNLQNLRIWGDLSY--YQSLLSKSLCRL-SCLESLKLANESKMPRRSN-----TIL-AEY  207 (341)
Q Consensus       140 ~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~--~~~~l~~~l~~l-~~L~~L~l~~~~e~~~~l~-----~lp-~~~  207 (341)
                            .. +.. +..+   ++|+.|+++++...  ....+...+..+ ++|+.|++++|     .++     .++ .+.
T Consensus        96 ------~~-~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-----~l~~~~~~~~~~~~~  162 (319)
T cd00116          96 ------DG-CGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-----RLEGASCEALAKALR  162 (319)
T ss_pred             ------hH-HHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-----cCCchHHHHHHHHHH
Confidence                  11 222 3333   44888888877522  223444556677 88888888887     444     223 344


Q ss_pred             cccCCccEEEEEeecCCCCCCc----cCcCCCCCCeEEEEEeCc------EeeecCCCCCcccEEEEecCCCCCceee-c
Q 044597          208 QFPPSLTHLSFSNIELIDDPMP----ALEKLPVLQVLKLKYLGR------KLACSSDGFPKLKVLHLKSMLWLEEWTM-G  276 (341)
Q Consensus       208 ~lp~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~  276 (341)
                      .+ .+|++|++++|.++.....    .+..+++|++|+++.+..      .+......+++|++|++++++ +..... .
T Consensus       163 ~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~  240 (319)
T cd00116         163 AN-RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAA  240 (319)
T ss_pred             hC-CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHH
Confidence            55 6788888888887543322    234556888888832221      111223457889999998853 443210 0


Q ss_pred             C-C----CCCcccEEEEecCCCCC-----ccccccCCCCCCcEEEEecCC
Q 044597          277 I-K----AMPKLECVIINPCAHLK-----RIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       277 ~-~----~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      . .    ..+.|+.|++.+|. ++     .+...+..+++|+++++++|.
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         241 LASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            0 0    24789999999987 43     234455667889999999887

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.14  E-value=6.1e-12  Score=110.73  Aligned_cols=215  Identities=20%  Similarity=0.244  Sum_probs=128.6

Q ss_pred             ccCCcceeeeeccCCCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC----cCCCCCC-------
Q 044597           71 IMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA----ITLPAHP-------  138 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~----~~lp~~i-------  138 (341)
                      .++.-+-..+|+- +.|+.+|+..|+.+++||.||||+|.|+.+ |..|..|.+|-.|-+.+    ..+|++.       
T Consensus        64 ~LP~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   64 NLPPETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cCCCcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            3333333444444 789999999999999999999999988887 77888898888776665    4555544       


Q ss_pred             ceEEeC----CCcchhhhhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCC-----CCC----------
Q 044597          139 GKYSLH----PCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESK-----MPR----------  198 (341)
Q Consensus       139 ~~~~~~----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e-----~~~----------  198 (341)
                      ..+...    ..+ ..+++..+++|..|.+.++   ....++. .+..+..++.+.+..+.-     ++.          
T Consensus       143 qrLllNan~i~Ci-r~~al~dL~~l~lLslyDn---~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  143 QRLLLNANHINCI-RQDALRDLPSLSLLSLYDN---KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHhcChhhhcch-hHHHHHHhhhcchhcccch---hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            000000    133 3334777777777777766   4555554 466666677666654320     100          


Q ss_pred             ------------------------------------------CCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597          199 ------------------------------------------RSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL  234 (341)
Q Consensus       199 ------------------------------------------~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l  234 (341)
                                                                .....|  -+..+ ++|++|++++|.++.....+|..+
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcch
Confidence                                                      111223  33456 777777777777766666677777


Q ss_pred             CCCCeEEEEEeCcEe--eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCC
Q 044597          235 PVLQVLKLKYLGRKL--ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCA  292 (341)
Q Consensus       235 ~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~  292 (341)
                      ..+++|.+..+..+.  .....++..|+.|++.+ ++++.+.. ....+.+|.+|.+-.+|
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence            777777772222111  11234566777777776 44444432 22234556666665554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=2e-11  Score=122.07  Aligned_cols=92  Identities=22%  Similarity=0.279  Sum_probs=64.7

Q ss_pred             CcccChhhhhcCCCccEEecCCc-cccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEE
Q 044597           87 LKSLPSSFLSSLLNLYTLEMPFS-YIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW  165 (341)
Q Consensus        87 ~~~lp~~if~~L~~L~~L~Ls~~-~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~  165 (341)
                      +..++..+|..++.|++|||++| .+.++|.+|+.|-+||+|++++..++          .. |.. ++++++|.+|++.
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~----------~L-P~~-l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS----------HL-PSG-LGNLKKLIYLNLE  626 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc----------cc-chH-HHHHHhhheeccc
Confidence            56667777799999999999998 88999999999999999999994443          22 333 6666666666666


Q ss_pred             eecchhhhHHHHHhcCCCCCCEEEEEe
Q 044597          166 GDLSYYQSLLSKSLCRLSCLESLKLAN  192 (341)
Q Consensus       166 ~~~~~~~~~l~~~l~~l~~L~~L~l~~  192 (341)
                      ...  .....+.....+++|++|.+-.
T Consensus       627 ~~~--~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  627 VTG--RLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccc--ccccccchhhhcccccEEEeec
Confidence            554  2223333444466666666644

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.99  E-value=5.7e-11  Score=107.08  Aligned_cols=226  Identities=19%  Similarity=0.099  Sum_probs=145.9

Q ss_pred             CcceeeeeccC-CCCc-------ccChhhhhcCCCccEEecCCcccc-ccchhhccccc---CceeeecCcCCCCCCceE
Q 044597           74 QEVRLRENSII-PSLK-------SLPSSFLSSLLNLYTLEMPFSYID-HTADEFWKMSK---LRYLNFGAITLPAHPGKY  141 (341)
Q Consensus        74 ~l~~Lr~L~l~-~~~~-------~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~i~~L~~---L~~L~l~~~~lp~~i~~~  141 (341)
                      ..+.++.+++. ..+.       .++..+ .++++|++|++++|.+. ..+..+..+.+   |++|++++..+..     
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-----  122 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-----  122 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-----
Confidence            34456666664 2222       344555 88999999999999665 45566666666   9999998833321     


Q ss_pred             EeCC-CcchhhhhCCC-CCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc-----Cc-ccccccC
Q 044597          142 SLHP-CCSTEEILGRL-PNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNT-----IL-AEYQFPP  211 (341)
Q Consensus       142 ~~~~-~~~~~~~l~~l-~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~-----lp-~~~~lp~  211 (341)
                        .+ .. +..++..+ ++|++|++++|...  ....++..+..+++|+.|++++|     .++.     ++ .+... +
T Consensus       123 --~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-----~l~~~~~~~l~~~l~~~-~  193 (319)
T cd00116         123 --RGLRL-LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-----GIGDAGIRALAEGLKAN-C  193 (319)
T ss_pred             --HHHHH-HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-----CCchHHHHHHHHHHHhC-C
Confidence              00 11 22226677 89999999998632  33456667888899999999987     5542     23 34455 6


Q ss_pred             CccEEEEEeecCCCCCC----ccCcCCCCCCeEEEEEeCcEe---ee----cCCCCCcccEEEEecCCCCC-----ceee
Q 044597          212 SLTHLSFSNIELIDDPM----PALEKLPVLQVLKLKYLGRKL---AC----SSDGFPKLKVLHLKSMLWLE-----EWTM  275 (341)
Q Consensus       212 ~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~---~~----~~~~~~~L~~L~l~~~~~l~-----~~~~  275 (341)
                      +|+.|++++|.+.....    ..+..+++|++|+++.+....   ..    .....+.|++|++.++. ++     .+..
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~  272 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAE  272 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHH
Confidence            99999999998754332    235678899999993322110   00    01134799999999864 33     1222


Q ss_pred             cCCCCCcccEEEEecCCCCCc-----cccccCCC-CCCcEEEEecCC
Q 044597          276 GIKAMPKLECVIINPCAHLKR-----IPEQLWCL-KSLNKLELWWPE  316 (341)
Q Consensus       276 ~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l-~~L~~L~l~~~~  316 (341)
                      ....+++|+.+++++|. +..     +...+... +.|+++++.++|
T Consensus       273 ~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         273 VLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            33456899999999998 443     22233334 678888888776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=2.9e-10  Score=101.51  Aligned_cols=228  Identities=21%  Similarity=0.152  Sum_probs=150.1

Q ss_pred             CCcceeeeeccCC-CCcccCh--hhhhcCCCccEEecCCc---cccccchhhcccccCceeeecCcCCCCCCceEEeCCC
Q 044597           73 DQEVRLRENSIIP-SLKSLPS--SFLSSLLNLYTLEMPFS---YIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPC  146 (341)
Q Consensus        73 ~~l~~Lr~L~l~~-~~~~lp~--~if~~L~~L~~L~Ls~~---~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~  146 (341)
                      .++..||...+.+ .+...+.  .. ..+++++.||||.|   ++..+-.-...|++|+.|+++.+++-.       ...
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-------~~~  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-------FIS  189 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-------Ccc
Confidence            4577888888874 5555552  56 89999999999999   444444456789999999999844421       001


Q ss_pred             cchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCC
Q 044597          147 CSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELID  225 (341)
Q Consensus       147 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~  225 (341)
                      . ..  -..++.|++|.++.|+.+ ...+...+..+++|+.|++.+|.    .+.... ...-+ ..|+.|+|++|++..
T Consensus       190 s-~~--~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~----~~~~~~~~~~i~-~~L~~LdLs~N~li~  260 (505)
T KOG3207|consen  190 S-NT--TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANE----IILIKATSTKIL-QTLQELDLSNNNLID  260 (505)
T ss_pred             c-cc--hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccc----ccceecchhhhh-hHHhhccccCCcccc
Confidence            1 11  236788999999999754 44555567789999999999873    222111 22234 889999999999533


Q ss_pred             -CCCccCcCCCCCCeEEEEEeCcE-ee-------ecCCCCCcccEEEEecCCCCCceee--cCCCCCcccEEEEecCCCC
Q 044597          226 -DPMPALEKLPVLQVLKLKYLGRK-LA-------CSSDGFPKLKVLHLKSMLWLEEWTM--GIKAMPKLECVIINPCAHL  294 (341)
Q Consensus       226 -~~~~~l~~l~~L~~L~l~~~~~~-~~-------~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l  294 (341)
                       ......+.+|.|..|.++..+.. +.       .....||+|++|++.. +++.+|+.  ....+++|+.|.+..++.-
T Consensus       261 ~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  261 FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccccc
Confidence             44567889999999999333321 11       1234799999999997 55666662  3445778888887766621


Q ss_pred             Ccc----ccccCCCCCCcEEEEecCChH
Q 044597          295 KRI----PEQLWCLKSLNKLELWWPEPK  318 (341)
Q Consensus       295 ~~l----p~~l~~l~~L~~L~l~~~~~~  318 (341)
                      +.-    -..|..+++|..|.=.+|.+.
T Consensus       340 ~e~~~a~~~VIAr~~~l~~LN~~di~p~  367 (505)
T KOG3207|consen  340 KETDTAKLLVIARISQLVKLNDVDISPN  367 (505)
T ss_pred             ccccceeEEeeeehhhhhhhcccccChH
Confidence            110    112455566666655555533

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.84  E-value=7.8e-11  Score=108.31  Aligned_cols=120  Identities=18%  Similarity=0.268  Sum_probs=80.0

Q ss_pred             eccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCC
Q 044597           81 NSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNL  159 (341)
Q Consensus        81 L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L  159 (341)
                      .+++ +.+.++|..+ +.+..|+.+.|+.|.+..+|..+++|..|.+||++.+.+.          .. +.. +..++ |
T Consensus        80 aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS----------~l-p~~-lC~lp-L  145 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS----------HL-PDG-LCDLP-L  145 (722)
T ss_pred             hhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh----------cC-Chh-hhcCc-c
Confidence            4444 5677777777 7777788888888877788888888888888877763221          11 222 44443 6


Q ss_pred             ceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecC
Q 044597          160 QNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       160 ~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l  223 (341)
                      +.|-++++   ....+|..++.+..|..|+.+.|     .+..+| .++.+ .+|+.|.+..|++
T Consensus       146 kvli~sNN---kl~~lp~~ig~~~tl~~ld~s~n-----ei~slpsql~~l-~slr~l~vrRn~l  201 (722)
T KOG0532|consen  146 KVLIVSNN---KLTSLPEEIGLLPTLAHLDVSKN-----EIQSLPSQLGYL-TSLRDLNVRRNHL  201 (722)
T ss_pred             eeEEEecC---ccccCCcccccchhHHHhhhhhh-----hhhhchHHhhhH-HHHHHHHHhhhhh
Confidence            66666666   56666667776677777777766     666666 66666 6777777777764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.82  E-value=4.6e-10  Score=99.07  Aligned_cols=166  Identities=17%  Similarity=0.190  Sum_probs=112.8

Q ss_pred             cccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCC-ccccccchh-hcccccCceeeecC-------------
Q 044597           68 ISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPF-SYIDHTADE-FWKMSKLRYLNFGA-------------  131 (341)
Q Consensus        68 ~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~-~~~~~lp~~-i~~L~~L~~L~l~~-------------  131 (341)
                      +...|+.+.+||.|+++ ++|..|-+.-|..++.|-.|-+.+ |+|..+|.. |++|..|+.|.+.-             
T Consensus        83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d  162 (498)
T KOG4237|consen   83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD  162 (498)
T ss_pred             ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence            34578889999999997 577777666667777777766665 577777764 56666665555543             


Q ss_pred             --------------cCCCCCC-----------------------------------------------------------
Q 044597          132 --------------ITLPAHP-----------------------------------------------------------  138 (341)
Q Consensus       132 --------------~~lp~~i-----------------------------------------------------------  138 (341)
                                    ..++.+-                                                           
T Consensus       163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~  242 (498)
T KOG4237|consen  163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR  242 (498)
T ss_pred             hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence                          1222211                                                           


Q ss_pred             --------------ceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc
Q 044597          139 --------------GKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL  204 (341)
Q Consensus       139 --------------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp  204 (341)
                                    ..-..+... |..+|+++++|++|++++|..  ...-..++.+..+++.|.+..|     .++.+.
T Consensus       243 kf~c~~esl~s~~~~~d~~d~~c-P~~cf~~L~~L~~lnlsnN~i--~~i~~~aFe~~a~l~eL~L~~N-----~l~~v~  314 (498)
T KOG4237|consen  243 KFLCSLESLPSRLSSEDFPDSIC-PAKCFKKLPNLRKLNLSNNKI--TRIEDGAFEGAAELQELYLTRN-----KLEFVS  314 (498)
T ss_pred             hhhhhHHhHHHhhccccCcCCcC-hHHHHhhcccceEeccCCCcc--chhhhhhhcchhhhhhhhcCcc-----hHHHHH
Confidence                          000011123 444578888888888888852  2223356788888888888877     777776


Q ss_pred             --ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          205 --AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       205 --~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                        .+..+ ..|+.|++++|+++.....+|..+..|.+|.+
T Consensus       315 ~~~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  315 SGMFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             HHhhhcc-ccceeeeecCCeeEEEecccccccceeeeeeh
Confidence              55678 88888999999887777777888888888888

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=5.2e-10  Score=95.58  Aligned_cols=214  Identities=19%  Similarity=0.154  Sum_probs=138.3

Q ss_pred             cccCCcceeeeeccC--------CCC--cccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC-------c
Q 044597           70 PIMDQEVRLRENSII--------PSL--KSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA-------I  132 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~--------~~~--~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~-------~  132 (341)
                      ..+.-+.+|.+|..+        ++|  ..+|-.+ .-+++|..+.+|.|.-+.+-.-...-+-|+++...+       .
T Consensus       176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l-~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~  254 (490)
T KOG1259|consen  176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNL-NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS  254 (490)
T ss_pred             HHHHhhhheeEEEecCCCCCCccccccccccccch-HHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc
Confidence            344456677777763        222  2355555 667788888888885444433233456788887776       2


Q ss_pred             CCCCCCceEE--------eCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc
Q 044597          133 TLPAHPGKYS--------LHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL  204 (341)
Q Consensus       133 ~lp~~i~~~~--------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp  204 (341)
                      -+|... .+.        ..+.. ... +.....|.+|++++|   .+..+..++.-.+.++.|+++.|     .+..+.
T Consensus       255 l~pe~~-~~D~~~~E~~t~~G~~-~~~-~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N-----~i~~v~  323 (490)
T KOG1259|consen  255 LLPETI-LADPSGSEPSTSNGSA-LVS-ADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQN-----RIRTVQ  323 (490)
T ss_pred             ccchhh-hcCccCCCCCccCCce-EEe-cchHhhhhhcccccc---chhhhhhhhhhccceeEEecccc-----ceeeeh
Confidence            222211 000        00112 222 444567888888888   56667777888899999999887     666665


Q ss_pred             ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCcee--ecCCCCCc
Q 044597          205 AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPK  282 (341)
Q Consensus       205 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~  282 (341)
                      .+..+ ++|+.|++++|.++ ....+-.++.+.+.|.++.+..+.....+.+-+|..|++++ ++++.+.  ..+|++|.
T Consensus       324 nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  324 NLAEL-PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPC  400 (490)
T ss_pred             hhhhc-ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccH
Confidence            55667 88999999998863 33333446778888888444433334455677888888887 5566554  45789999


Q ss_pred             ccEEEEecCCCCCcccc
Q 044597          283 LECVIINPCAHLKRIPE  299 (341)
Q Consensus       283 L~~L~l~~c~~l~~lp~  299 (341)
                      |+.+.+.+|| +..+|+
T Consensus       401 LE~l~L~~NP-l~~~vd  416 (490)
T KOG1259|consen  401 LETLRLTGNP-LAGSVD  416 (490)
T ss_pred             HHHHhhcCCC-ccccch
Confidence            9999999999 666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.4e-09  Score=97.24  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=20.8

Q ss_pred             hcCCCccEEecCCccccccch--hhcccccCceeeecC
Q 044597           96 SSLLNLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGA  131 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~  131 (341)
                      +++++|+...|.++.+...+.  -...+++++.|||+.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~  155 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR  155 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchh
Confidence            566666666666665555442  344555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.77  E-value=1.4e-09  Score=88.21  Aligned_cols=124  Identities=24%  Similarity=0.300  Sum_probs=39.2

Q ss_pred             hcCCCccEEecCCccccccchhhc-ccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhH
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFW-KMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSL  174 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~-~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  174 (341)
                      .+..+++.|+|++|.|..+. .++ .+.+|+.|+++++.+-.            ++. +..+++|++|++++|.   +..
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~------------l~~-l~~L~~L~~L~L~~N~---I~~   78 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK------------LEG-LPGLPRLKTLDLSNNR---ISS   78 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--------------TT-----TT--EEE--SS------S
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc------------ccC-ccChhhhhhcccCCCC---CCc
Confidence            34556677777777666653 344 46667777776643321            444 6666777777777764   333


Q ss_pred             HHHHh-cCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCC---ccCcCCCCCCeEEE
Q 044597          175 LSKSL-CRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPM---PALEKLPVLQVLKL  242 (341)
Q Consensus       175 l~~~l-~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l  242 (341)
                      +...+ ..+++|+.|++++|     .+..+.   .+..+ ++|+.|++.+|++....-   ..+..+|+|+.|+-
T Consensus        79 i~~~l~~~lp~L~~L~L~~N-----~I~~l~~l~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNN-----KISDLNELEPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS--------SCCCCGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cccchHHhCCcCCEEECcCC-----cCCChHHhHHHHcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            32222 24677777777766     555544   45567 788888888887643221   12455677777754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.72  E-value=1.5e-09  Score=100.09  Aligned_cols=167  Identities=18%  Similarity=0.228  Sum_probs=128.9

Q ss_pred             cchhhHHh--hhccCCc-ccccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCcee
Q 044597           52 SCSPALLT--VAFKGEF-IISPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYL  127 (341)
Q Consensus        52 ~~~~~~~~--~~~~~~~-~~~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L  127 (341)
                      .|....+.  +.|.+.+ .+...+.++..|.|++++ +.+..+|..+ +.|+ |+.|.+++|++..+|.+++.+..|..|
T Consensus        94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~l  171 (722)
T KOG0532|consen   94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHL  171 (722)
T ss_pred             HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchhHHHh
Confidence            45544333  4555544 445677888899999998 6889999999 8887 899999999999999999988999999


Q ss_pred             eecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-cc
Q 044597          128 NFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AE  206 (341)
Q Consensus       128 ~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~  206 (341)
                      |.+.+.+-          .. +++ ++.+.+|+.|.+..+   ....+|..+. .-.|..||++.|     .+..+| .+
T Consensus       172 d~s~nei~----------sl-psq-l~~l~slr~l~vrRn---~l~~lp~El~-~LpLi~lDfScN-----kis~iPv~f  230 (722)
T KOG0532|consen  172 DVSKNEIQ----------SL-PSQ-LGYLTSLRDLNVRRN---HLEDLPEELC-SLPLIRLDFSCN-----KISYLPVDF  230 (722)
T ss_pred             hhhhhhhh----------hc-hHH-hhhHHHHHHHHHhhh---hhhhCCHHHh-CCceeeeecccC-----ceeecchhh
Confidence            98874432          44 667 888999999988877   6777888887 446788999888     899999 88


Q ss_pred             ccccCCccEEEEEeecCCCCCCcc--CcCCCCCCeEEE
Q 044597          207 YQFPPSLTHLSFSNIELIDDPMPA--LEKLPVLQVLKL  242 (341)
Q Consensus       207 ~~lp~~L~~L~l~~~~l~~~~~~~--l~~l~~L~~L~l  242 (341)
                      ..| .+|++|.|.+|.+...+.+.  -|...--++|+.
T Consensus       231 r~m-~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~  267 (722)
T KOG0532|consen  231 RKM-RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST  267 (722)
T ss_pred             hhh-hhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence            899 99999999999985444332  344555666666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.70  E-value=1.5e-08  Score=94.23  Aligned_cols=183  Identities=22%  Similarity=0.240  Sum_probs=123.1

Q ss_pred             CCcccChhhhhcCCCccEEecCCccccccchhhcccc-cCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEE
Q 044597           86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMS-KLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRI  164 (341)
Q Consensus        86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~-~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l  164 (341)
                      .+..-+..+ ..++.+..|++.++.+..+|.....+. +|+.|+++++.+..          . +.. ++.+++|+.|++
T Consensus       104 ~~~~~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~----------l-~~~-~~~l~~L~~L~l  170 (394)
T COG4886         104 RLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES----------L-PSP-LRNLPNLKNLDL  170 (394)
T ss_pred             ccccCchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhh----------h-hhh-hhcccccccccc
Confidence            333445556 667788888888888888888788785 88888888744431          1 234 778888888888


Q ss_pred             EeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEE
Q 044597          165 WGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLK  243 (341)
Q Consensus       165 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  243 (341)
                      +++   ....++...+.+++|+.|+++++     .+..+| .+... .+|+++.+++|.. ...+..+..+.++..+.+.
T Consensus       171 ~~N---~l~~l~~~~~~~~~L~~L~ls~N-----~i~~l~~~~~~~-~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~  240 (394)
T COG4886         171 SFN---DLSDLPKLLSNLSNLNNLDLSGN-----KISDLPPEIELL-SALEELDLSNNSI-IELLSSLSNLKNLSGLELS  240 (394)
T ss_pred             CCc---hhhhhhhhhhhhhhhhheeccCC-----ccccCchhhhhh-hhhhhhhhcCCcc-eecchhhhhcccccccccC
Confidence            887   56777776667888888888887     777787 44444 6688888888852 3444556667777766652


Q ss_pred             Ee-CcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCC
Q 044597          244 YL-GRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAH  293 (341)
Q Consensus       244 ~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~  293 (341)
                      .+ ........+.++++++|++.+ +.+.+++. .+.+.+++.|+++++..
T Consensus       241 ~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         241 NNKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             Cceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCccc
Confidence            22 121133445666677777776 44555554 55677777777777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.65  E-value=4.8e-09  Score=85.12  Aligned_cols=128  Identities=23%  Similarity=0.286  Sum_probs=45.9

Q ss_pred             ccCCcceeeeeccCC-CCcccChhhhh-cCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           71 IMDQEVRLRENSIIP-SLKSLPSSFLS-SLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~~-~~~~lp~~if~-~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      .+.+..++|.|++.+ .|..+. .+ + .+.+|+.|++++|.+..++ ++..+++|++|+++++.+-.            
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie-~L-~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~------------   78 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIE-NL-GATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS------------   78 (175)
T ss_dssp             -----------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S------------
T ss_pred             cccccccccccccccccccccc-ch-hhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc------------
Confidence            344556778888874 666664 45 5 5788888888888888875 57788888888888854431            


Q ss_pred             hhhhh-CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-----ccccccCCccEEEEEe
Q 044597          149 TEEIL-GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-----AEYQFPPSLTHLSFSN  220 (341)
Q Consensus       149 ~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-----~~~~lp~~L~~L~l~~  220 (341)
                      +.+++ ..+++|++|++++|.......+ ..++.+++|+.|++.+|     .+..-+     -+..+ |+|+.|+-..
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~N-----Pv~~~~~YR~~vi~~l-P~Lk~LD~~~  149 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGN-----PVCEKKNYRLFVIYKL-PSLKVLDGQD  149 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT------GGGGSTTHHHHHHHH--TT-SEETTEE
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCC-----cccchhhHHHHHHHHc-ChhheeCCEE
Confidence            32213 3578888888888864444443 45677888888888876     444444     13457 7787776544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.65  E-value=2.6e-09  Score=91.38  Aligned_cols=124  Identities=24%  Similarity=0.334  Sum_probs=66.7

Q ss_pred             cCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHH
Q 044597           97 SLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLS  176 (341)
Q Consensus        97 ~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~  176 (341)
                      ..+.|+.+|||+|.|..+..++.-+++++.|+++.+.+-           . +.. +..+++|+.|++++|   ....+.
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-----------~-v~n-La~L~~L~~LDLS~N---~Ls~~~  345 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-----------T-VQN-LAELPQLQLLDLSGN---LLAECV  345 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEecccccee-----------e-ehh-hhhcccceEeecccc---hhHhhh
Confidence            445677777777777777777777777777777763331           1 333 555556666666655   233333


Q ss_pred             HHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCC-CCCccCcCCCCCCeEEE
Q 044597          177 KSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELID-DPMPALEKLPVLQVLKL  242 (341)
Q Consensus       177 ~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l  242 (341)
                      .+-..+-+.+.|.++.|     .++.+..++.+ -+|..|++.+|++.. +.+..+|++|+|+.+.+
T Consensus       346 Gwh~KLGNIKtL~La~N-----~iE~LSGL~KL-YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  346 GWHLKLGNIKTLKLAQN-----KIETLSGLRKL-YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             hhHhhhcCEeeeehhhh-----hHhhhhhhHhh-hhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            33334445555555554     44444444445 555555555555321 23334555555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.59  E-value=3.5e-08  Score=91.83  Aligned_cols=189  Identities=22%  Similarity=0.285  Sum_probs=143.5

Q ss_pred             EEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC-CCceEEEEeecchhhhHHHHHhcC
Q 044597          103 TLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP-NLQNLRIWGDLSYYQSLLSKSLCR  181 (341)
Q Consensus       103 ~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~  181 (341)
                      .++++.+.+..-+..+..++.++.|++.++.+-          .. ++. .+.++ +|+.|+++++   ....+|..++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~----------~i-~~~-~~~~~~nL~~L~l~~N---~i~~l~~~~~~  161 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT----------DI-PPL-IGLLKSNLKELDLSDN---KIESLPSPLRN  161 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc----------cC-ccc-cccchhhccccccccc---chhhhhhhhhc
Confidence            588888877666667778889999999883332          22 233 55564 9999999998   57777788999


Q ss_pred             CCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEe-CcEeeecCCCCCcc
Q 044597          182 LSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYL-GRKLACSSDGFPKL  259 (341)
Q Consensus       182 l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L  259 (341)
                      +++|+.|+++.|     .+..+| ..+.. ++|+.|++++|.+...+ ...+....|+++.++.+ ..........+.++
T Consensus       162 l~~L~~L~l~~N-----~l~~l~~~~~~~-~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l  234 (394)
T COG4886         162 LPNLKNLDLSFN-----DLSDLPKLLSNL-SNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIELLSSLSNLKNL  234 (394)
T ss_pred             cccccccccCCc-----hhhhhhhhhhhh-hhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcceecchhhhhcccc
Confidence            999999999999     889998 44477 89999999999973322 23355666999999555 44455556677777


Q ss_pred             cEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          260 KVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       260 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      ..+.+.+ ..+...+...+.++++++|.+.+|. +..++. ++.+.+++.|+++++.
T Consensus       235 ~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         235 SGLELSN-NKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccCC-ceeeeccchhccccccceecccccc-cccccc-ccccCccCEEeccCcc
Confidence            7777554 3444445666788999999999998 787876 8889999999999865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.5e-09  Score=91.34  Aligned_cols=181  Identities=21%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             CccEEecCCccccc--cchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHH
Q 044597          100 NLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK  177 (341)
Q Consensus       100 ~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~  177 (341)
                      .|++||||...|+.  +-.-+..+.+|+.|.+.+.+         ++..+ ... +++-.+|+.|+++.+..-...++.-
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~---------LdD~I-~~~-iAkN~~L~~lnlsm~sG~t~n~~~l  254 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR---------LDDPI-VNT-IAKNSNLVRLNLSMCSGFTENALQL  254 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc---------cCcHH-HHH-HhccccceeeccccccccchhHHHH
Confidence            37777887775542  33335667777777776633         33344 555 7777778888887776323333444


Q ss_pred             HhcCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeec--CCCCCCccCcCCCCCCeEEEEEeCcEeeecC
Q 044597          178 SLCRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIE--LIDDPMPALEKLPVLQVLKLKYLGRKLACSS  253 (341)
Q Consensus       178 ~l~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  253 (341)
                      .+.+++.|..|+++||.    ..+. +. .+....++|+.|++++|.  +....+..                     -.
T Consensus       255 l~~scs~L~~LNlsWc~----l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t---------------------L~  309 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWCF----LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST---------------------LV  309 (419)
T ss_pred             HHHhhhhHhhcCchHhh----ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH---------------------HH
Confidence            56777788888888873    2221 22 223333677777777776  21111111                     12


Q ss_pred             CCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecCCCCCcccc---ccCCCCCCcEEEEecCChH
Q 044597          254 DGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPCAHLKRIPE---QLWCLKSLNKLELWWPEPK  318 (341)
Q Consensus       254 ~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~~~  318 (341)
                      ..+|.|..|+++++..++.-. .....|+.|++|.++.|..+  .|.   .+...|+|.+|++.+|-++
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence            246666666666655554422 22345777777777777643  232   2455777777777776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.48  E-value=1.2e-07  Score=63.19  Aligned_cols=56  Identities=25%  Similarity=0.413  Sum_probs=47.0

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA  131 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~  131 (341)
                      ++|++|++. +.+..+|...|..+++|++|++++|.+..+|. .|..+++|++|++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence            357888887 57889998887999999999999998888865 678899999998876

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=5.8e-09  Score=89.10  Aligned_cols=137  Identities=18%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCCc
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      +..+.+|+.|.+.+++  ..+.+...+..-.+|+.|+++.|.    .++...   -+.++ +.|..|++++|.+..+.+.
T Consensus       206 Ls~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~s----G~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vt  278 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCS----GFTENALQLLLSSC-SRLDELNLSWCFLFTEKVT  278 (419)
T ss_pred             HHHHHhhhhccccccc--cCcHHHHHHhccccceeecccccc----ccchhHHHHHHHhh-hhHhhcCchHhhccchhhh
Confidence            5667777777777776  445555667777777777777765    555543   34566 7777777777775332221


Q ss_pred             cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCC---ceeecCCCCCcccEEEEecCCCCCc-cccccCCCC
Q 044597          230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLE---EWTMGIKAMPKLECVIINPCAHLKR-IPEQLWCLK  305 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~---~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~  305 (341)
                      .+                    ...--++|+.|+++++...-   .+..-...+|+|..|++++|-.++. ....+..++
T Consensus       279 v~--------------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  279 VA--------------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             HH--------------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            10                    01123567777777754221   2222234689999999999997775 233456799


Q ss_pred             CCcEEEEecCC
Q 044597          306 SLNKLELWWPE  316 (341)
Q Consensus       306 ~L~~L~l~~~~  316 (341)
                      .|++|.++.|-
T Consensus       339 ~L~~lSlsRCY  349 (419)
T KOG2120|consen  339 YLQHLSLSRCY  349 (419)
T ss_pred             hheeeehhhhc
Confidence            99999999987

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.26  E-value=1.2e-07  Score=84.76  Aligned_cols=141  Identities=21%  Similarity=0.260  Sum_probs=98.9

Q ss_pred             cCCCCCCEEEEEeCCCCCCCCccCc-c-cc-cccCCccEEEEEeec-CCCCCCccCcC-CCCCCeEEEEEeC----cEee
Q 044597          180 CRLSCLESLKLANESKMPRRSNTIL-A-EY-QFPPSLTHLSFSNIE-LIDDPMPALEK-LPVLQVLKLKYLG----RKLA  250 (341)
Q Consensus       180 ~~l~~L~~L~l~~~~e~~~~l~~lp-~-~~-~lp~~L~~L~l~~~~-l~~~~~~~l~~-l~~L~~L~l~~~~----~~~~  250 (341)
                      ..+..|+.|+.+++.    .++..+ | ++ .- .+|+.+.+..|+ ++...+..++. .+.|+.+++...+    ..+.
T Consensus       291 ~~c~~lq~l~~s~~t----~~~d~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCT----DITDEVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             hhhhHhhhhcccCCC----CCchHHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence            445667777777665    555555 2 33 45 799999999998 55555556554 7899999882111    1233


Q ss_pred             ecCCCCCcccEEEEecCCCCCce-----eecCCCCCcccEEEEecCCCCCc-cccccCCCCCCcEEEEecCChHHHHHhh
Q 044597          251 CSSDGFPKLKVLHLKSMLWLEEW-----TMGIKAMPKLECVIINPCAHLKR-IPEQLWCLKSLNKLELWWPEPKLRQQLW  324 (341)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~  324 (341)
                      .....++.|+.|.++.|..+++-     .....++..|+.+.+++||.+.. .-..+..+++|+.+++.+|..-.++.++
T Consensus       366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS  445 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence            34557999999999988766554     22234678899999999997665 2334677899999999999977777776


Q ss_pred             h
Q 044597          325 E  325 (341)
Q Consensus       325 ~  325 (341)
                      +
T Consensus       446 ~  446 (483)
T KOG4341|consen  446 R  446 (483)
T ss_pred             H
Confidence            6

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.22  E-value=1.9e-07  Score=87.37  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=89.1

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      ..+..++.+.+|++. +.+..+...+ ..+++|++|++++|.|..+. ++..+..|+.|++.++.+-.            
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~------------  154 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISD------------  154 (414)
T ss_pred             cccccccceeeeeccccchhhcccch-hhhhcchheecccccccccc-chhhccchhhheeccCcchh------------
Confidence            446778888999998 5777776657 88999999999999888884 57788889999888844432            


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHH-hcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecC
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKS-LCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l  223 (341)
                      +.. +..+++|+.++++++.   ...+... +..+.+++.+.++++     .+..+.++..+ ..+..+++..|.+
T Consensus       155 ~~~-~~~l~~L~~l~l~~n~---i~~ie~~~~~~~~~l~~l~l~~n-----~i~~i~~~~~~-~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  155 ISG-LESLKSLKLLDLSYNR---IVDIENDELSELISLEELDLGGN-----SIREIEGLDLL-KKLVLLSLLDNKI  220 (414)
T ss_pred             ccC-CccchhhhcccCCcch---hhhhhhhhhhhccchHHHhccCC-----chhcccchHHH-HHHHHhhcccccc
Confidence            445 6667888888888885   3333222 577888888888876     33333333333 3444445555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.17  E-value=3.7e-07  Score=79.83  Aligned_cols=228  Identities=19%  Similarity=0.191  Sum_probs=122.3

Q ss_pred             cCCcceeeeeccCC-CC-----cccChhhhhcCCCccEEecCCcc----ccccchh-------hcccccCceeeecCcCC
Q 044597           72 MDQEVRLRENSIIP-SL-----KSLPSSFLSSLLNLYTLEMPFSY----IDHTADE-------FWKMSKLRYLNFGAITL  134 (341)
Q Consensus        72 ~~~l~~Lr~L~l~~-~~-----~~lp~~if~~L~~L~~L~Ls~~~----~~~lp~~-------i~~L~~L~~L~l~~~~l  134 (341)
                      ...+..+..+++++ .+     +.+...+ .+.+.|+.-++|.-.    ..++|..       +-..++|++|||+++.+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L-~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVL-ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHH-hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            33445556666653 22     1233445 666677777776542    2334433       22345677777776332


Q ss_pred             CCCCceEEeCCCc--chhhhhCCCCCCceEEEEeecchh--hhH---------HHHHhcCCCCCCEEEEEeCCCCCCCCc
Q 044597          135 PAHPGKYSLHPCC--STEEILGRLPNLQNLRIWGDLSYY--QSL---------LSKSLCRLSCLESLKLANESKMPRRSN  201 (341)
Q Consensus       135 p~~i~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~--~~~---------l~~~l~~l~~L~~L~l~~~~e~~~~l~  201 (341)
                      -+         ..  .+.+.+.++..|+.|++.+|....  ...         ...-+..-++|+.+....|     ++.
T Consensus       105 G~---------~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-----rle  170 (382)
T KOG1909|consen  105 GP---------KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-----RLE  170 (382)
T ss_pred             Cc---------cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-----ccc
Confidence            21         11  012225567777777777776211  111         1122445567777777766     555


Q ss_pred             cCc------ccccccCCccEEEEEeecCCCCCC----ccCcCCCCCCeEEEEEeC------cEeeecCCCCCcccEEEEe
Q 044597          202 TIL------AEYQFPPSLTHLSFSNIELIDDPM----PALEKLPVLQVLKLKYLG------RKLACSSDGFPKLKVLHLK  265 (341)
Q Consensus       202 ~lp------~~~~lp~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~------~~~~~~~~~~~~L~~L~l~  265 (341)
                      ..+      .+... +.|+.+.+..|.+.....    ..+..+|+|+.|++..+.      ..+......+|+|+.|++.
T Consensus       171 n~ga~~~A~~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  171 NGGATALAEAFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             cccHHHHHHHHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            554      12345 677777777777544333    235667788888772211      1112223356777788877


Q ss_pred             cCCCCCceee-----cCCCCCcccEEEEecCCCCCc-----cccccCCCCCCcEEEEecCC
Q 044597          266 SMLWLEEWTM-----GIKAMPKLECVIINPCAHLKR-----IPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       266 ~~~~l~~~~~-----~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +|.--..=..     -....|+|+.|.+.+|. ++.     +-..+...|.|..|.+.+|.
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            7641111000     01237788888888877 332     22234557788888888876

>PLN03150 hypothetical protein; Provisional

Probab=98.15  E-value=4.6e-06  Score=81.88  Aligned_cols=105  Identities=17%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             ccEEecCCcccc-ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHh
Q 044597          101 LYTLEMPFSYID-HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSL  179 (341)
Q Consensus       101 L~~L~Ls~~~~~-~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l  179 (341)
                      ++.|+|++|.+. .+|..+++|++|+.|+|+++.+.         +.. +.. ++.+++|+.|++++|.  ....+|..+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~---------g~i-P~~-~~~l~~L~~LdLs~N~--lsg~iP~~l  486 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR---------GNI-PPS-LGSITSLEVLDLSYNS--FNGSIPESL  486 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc---------CcC-ChH-HhCCCCCCEEECCCCC--CCCCCchHH
Confidence            566677766443 56666777777777777663332         133 444 6777777777777664  334566677


Q ss_pred             cCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeec
Q 044597          180 CRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIE  222 (341)
Q Consensus       180 ~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~  222 (341)
                      +.+++|+.|++++|.    ....+| .+..++.++..+++.+|.
T Consensus       487 ~~L~~L~~L~Ls~N~----l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        487 GQLTSLRILNLNGNS----LSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             hcCCCCCEEECcCCc----ccccCChHHhhccccCceEEecCCc
Confidence            777777777777763    333566 554432456677777766

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=1.4e-07  Score=88.27  Aligned_cols=126  Identities=21%  Similarity=0.247  Sum_probs=94.3

Q ss_pred             CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597           74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      .+..+..++++ +.+.++-..+ +.+++|+.|++..|.+..+...+..+.+|++|+++++.+-.            +.. 
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l-~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~------------i~~-  135 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHL-SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK------------LEG-  135 (414)
T ss_pred             HhHhHHhhccchhhhhhhhccc-ccccceeeeeccccchhhcccchhhhhcchheecccccccc------------ccc-
Confidence            44555666665 4566644557 88999999999999999987668999999999999855532            444 


Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcc--cccccCCccEEEEEeecC
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILA--EYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~--~~~lp~~L~~L~l~~~~l  223 (341)
                      +..++.|+.|++.+|.   +..+ ..+..++.|+.++++++     .+..+..  ...+ .+++.+.+.+|.+
T Consensus       136 l~~l~~L~~L~l~~N~---i~~~-~~~~~l~~L~~l~l~~n-----~i~~ie~~~~~~~-~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  136 LSTLTLLKELNLSGNL---ISDI-SGLESLKSLKLLDLSYN-----RIVDIENDELSEL-ISLEELDLGGNSI  198 (414)
T ss_pred             hhhccchhhheeccCc---chhc-cCCccchhhhcccCCcc-----hhhhhhhhhhhhc-cchHHHhccCCch
Confidence            7778889999999885   3333 34556888999999887     6666653  4677 8888889988875

>PLN03150 hypothetical protein; Provisional

Probab=98.11  E-value=5.2e-06  Score=81.54  Aligned_cols=100  Identities=21%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             CceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-c
Q 044597          124 LRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-T  202 (341)
Q Consensus       124 L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~  202 (341)
                      ++.|+|+++.+.         +.. +.+ ++++++|+.|++++|.  ....+|..++.+++|+.|++++|     .+. .
T Consensus       420 v~~L~L~~n~L~---------g~i-p~~-i~~L~~L~~L~Ls~N~--l~g~iP~~~~~l~~L~~LdLs~N-----~lsg~  481 (623)
T PLN03150        420 IDGLGLDNQGLR---------GFI-PND-ISKLRHLQSINLSGNS--IRGNIPPSLGSITSLEVLDLSYN-----SFNGS  481 (623)
T ss_pred             EEEEECCCCCcc---------ccC-CHH-HhCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEEECCCC-----CCCCC
Confidence            667777773332         244 666 8999999999999885  44578888999999999999998     554 6


Q ss_pred             Cc-ccccccCCccEEEEEeecCCCCCCccCcCC-CCCCeEEE
Q 044597          203 IL-AEYQFPPSLTHLSFSNIELIDDPMPALEKL-PVLQVLKL  242 (341)
Q Consensus       203 lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l  242 (341)
                      +| .++.+ ++|+.|++++|.+++..+..++.+ .++..+++
T Consensus       482 iP~~l~~L-~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        482 IPESLGQL-TSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CchHHhcC-CCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            78 88899 899999999999876666666553 45666666

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=4.1e-07  Score=77.98  Aligned_cols=59  Identities=17%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             CCCCcccEEEEecCCCCCcee--ecCCCCCcccEEEEecCCCCCccccc------cCCCCCCcEEEEe
Q 044597          254 DGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLECVIINPCAHLKRIPEQ------LWCLKSLNKLELW  313 (341)
Q Consensus       254 ~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~lp~~------l~~l~~L~~L~l~  313 (341)
                      ..||.+..|++.. .++.+|.  .....||+|..|.+.++|-...+..+      ++++++++.|.=+
T Consensus       221 e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  221 EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            4566666666665 4455554  23446888888888888855544322      4567777766533

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.89  E-value=7.9e-06  Score=54.28  Aligned_cols=53  Identities=38%  Similarity=0.491  Sum_probs=30.7

Q ss_pred             CCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          184 CLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       184 ~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                      +|+.|++++|     .+..+|  ++..+ ++|++|++++|.+...+..++..+++|++|++
T Consensus         2 ~L~~L~l~~n-----~l~~i~~~~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen    2 NLESLDLSNN-----KLTEIPPDSFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TESEEEETSS-----TESEECTTTTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred             cCcEEECCCC-----CCCccCHHHHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence            4556666655     555555  55556 66666666666654444445555666665555

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.88  E-value=2.2e-06  Score=75.10  Aligned_cols=190  Identities=17%  Similarity=0.160  Sum_probs=101.4

Q ss_pred             hcCCCccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCC-c-----eEEeCCCcchhhhhCCCCCCceEEE
Q 044597           96 SSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHP-G-----KYSLHPCCSTEEILGRLPNLQNLRI  164 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i-~-----~~~~~~~~~~~~~l~~l~~L~~L~l  164 (341)
                      -..++|++||||.|.+.     .+-.-+.+...|++|.|.+.-+-+.- .     .+.+  .. -.. .+.-++||++..
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l--~~-~kk-~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFEL--AV-NKK-AASKPKLRVFIC  164 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHH--HH-Hhc-cCCCcceEEEEe
Confidence            45667888888888332     22223556777888888772111100 0     0000  00 111 344566777777


Q ss_pred             Eeecc--hhhhHHHHHhcCCCCCCEEEEEeCCC-CCCCCccCc-ccccccCCccEEEEEeecCCCCCC----ccCcCCCC
Q 044597          165 WGDLS--YYQSLLSKSLCRLSCLESLKLANESK-MPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPM----PALEKLPV  236 (341)
Q Consensus       165 ~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~e-~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~----~~l~~l~~  236 (341)
                      .+|+.  .....+...+...+.|+.+.+..+.= .+ .++-+. .+... ++|+.|++.+|.++...-    ..++.+++
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-G~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-GVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecccccCc-hhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccch
Confidence            76652  12334445566667777777766410 00 111111 33455 777778887777543321    23556677


Q ss_pred             CCeEEEEEeCcEee-------ecCCCCCcccEEEEecCCCCCc-----eeecCCCCCcccEEEEecCC
Q 044597          237 LQVLKLKYLGRKLA-------CSSDGFPKLKVLHLKSMLWLEE-----WTMGIKAMPKLECVIINPCA  292 (341)
Q Consensus       237 L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~  292 (341)
                      |++|+++++..+--       .....+|+|+.|.+.++. ++.     +.......|.|+.|.+++|.
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            77777733321111       012347888888888743 221     11223458899999999998

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=1.2e-05  Score=49.27  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=15.4

Q ss_pred             CccEEecCCccccccchhhcccccCceeeecC
Q 044597          100 NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus       100 ~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~  131 (341)
                      +|++|++++|.+..+|..+++|++|++|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence            44555555555555554455555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.82  E-value=2.4e-05  Score=48.00  Aligned_cols=39  Identities=28%  Similarity=0.365  Sum_probs=33.0

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA  115 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp  115 (341)
                      ++|++|+++ +.++.+|..+ ++|++|++|++++|.+..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence            368999998 6999999888 99999999999999888775

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=8.4e-05  Score=68.01  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=16.5

Q ss_pred             CcccEEEEecCCCCCceeecCCCCCcccEEEEecC
Q 044597          257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPC  291 (341)
Q Consensus       257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c  291 (341)
                      ++|++|.+.+|.... +|..  -..+|+.|.+.++
T Consensus       156 sSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence            456777776655331 2211  1245666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.66  E-value=0.00012  Score=66.97  Aligned_cols=51  Identities=14%  Similarity=0.047  Sum_probs=34.4

Q ss_pred             cceeeeeccC-CCCcccChhhhhcCCCccEEecCCc-cccccchhhcccccCceeeecC
Q 044597           75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFS-YIDHTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~-~~~~lp~~i~~L~~L~~L~l~~  131 (341)
                      +.+++.|+++ ++++++|. +   -.+|+.|.+++| .+..+|..+.  .+|++|++++
T Consensus        51 ~~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~  103 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCH  103 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCchhh--hhhhheEccC
Confidence            4566777776 36777772 3   245888888876 6677776552  5778887776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=7.1e-05  Score=73.84  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=17.0

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~  131 (341)
                      .++++|+.||+|++++..+ .+++.|++|+.|.+++
T Consensus       170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             hccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence            4444455555555544444 3444555555554444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.57  E-value=2.6e-06  Score=81.31  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=88.8

Q ss_pred             eeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh-hhCC
Q 044597           78 LRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE-ILGR  155 (341)
Q Consensus        78 Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~-~l~~  155 (341)
                      |..-+.+ +.+..+.+++ .-+++|+.|||++|++..+- .+..+++|++|||+++.+-.            ++. +...
T Consensus       166 L~~a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~------------vp~l~~~g  231 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH------------VPQLSMVG  231 (1096)
T ss_pred             HhhhhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc------------ccccchhh
Confidence            3344444 5667777788 88999999999999888875 78889999999999832210            111 0122


Q ss_pred             CCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCC
Q 044597          156 LPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDD  226 (341)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~  226 (341)
                      +. |+.|.+.+|   ....+ .++.++++|+.|++++|     -+....   .+..+ ..|+.|.|.+|++-..
T Consensus       232 c~-L~~L~lrnN---~l~tL-~gie~LksL~~LDlsyN-----ll~~hseL~pLwsL-s~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  232 CK-LQLLNLRNN---ALTTL-RGIENLKSLYGLDLSYN-----LLSEHSELEPLWSL-SSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hh-heeeeeccc---HHHhh-hhHHhhhhhhccchhHh-----hhhcchhhhHHHHH-HHHHHHhhcCCccccC
Confidence            33 899999988   45555 57889999999999997     454443   34467 8899999999986443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=5.7e-05  Score=65.14  Aligned_cols=156  Identities=18%  Similarity=0.240  Sum_probs=86.3

Q ss_pred             CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCcc-CcC
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPA-LEK  233 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~-l~~  233 (341)
                      ..+.++.+++.+|..+...++...+.+++.|+.|+++.|. +...+..+|  ..+ .+|+.|-+.+..+....... +..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp--~p~-~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLP--LPL-KNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCc--ccc-cceEEEEEcCCCCChhhhhhhhhc
Confidence            3556677777777766777777777888888888887651 000222233  234 67888888877766555543 556


Q ss_pred             CCCCCeEEEEEeC-----------cEeee--------------------cCCCCCcccEEEEecCCCCCceee--cCCCC
Q 044597          234 LPVLQVLKLKYLG-----------RKLAC--------------------SSDGFPKLKVLHLKSMLWLEEWTM--GIKAM  280 (341)
Q Consensus       234 l~~L~~L~l~~~~-----------~~~~~--------------------~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l  280 (341)
                      +|.+++|+++.+.           +.+..                    ....||++..+.+..++ ++....  ....+
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~  223 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPF  223 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCC
Confidence            7777777662211           00000                    00125555555554433 222221  11235


Q ss_pred             CcccEEEEecCCCCCccc--cccCCCCCCcEEEEecCC
Q 044597          281 PKLECVIINPCAHLKRIP--EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       281 ~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~  316 (341)
                      |.+..|.+..+. +.+..  +.+..++.|..|.+.+.|
T Consensus       224 p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  224 PSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             Ccchhhhhcccc-cccHHHHHHHcCCchhheeeccCCc
Confidence            555555555444 33322  245678888888888888

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=2.5e-05  Score=76.98  Aligned_cols=130  Identities=20%  Similarity=0.212  Sum_probs=78.7

Q ss_pred             cccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCC
Q 044597          121 MSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRS  200 (341)
Q Consensus       121 L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l  200 (341)
                      -.+|++|++++.       .....++  +...-..+|+|+.|.+.+.... .+.+..-..++++|..||++++     .+
T Consensus       121 r~nL~~LdI~G~-------~~~s~~W--~~kig~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~T-----nI  185 (699)
T KOG3665|consen  121 RQNLQHLDISGS-------ELFSNGW--PKKIGTMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGT-----NI  185 (699)
T ss_pred             HHhhhhcCcccc-------chhhccH--HHHHhhhCcccceEEecCceec-chhHHHHhhccCccceeecCCC-----Cc
Confidence            356788888771       1111112  3341234788888888876521 2234455667788888888876     55


Q ss_pred             ccCcccccccCCccEEEEEeecCCC-CCCccCcCCCCCCeEEEEEeC---cE-----eeecCCCCCcccEEEEec
Q 044597          201 NTILAEYQFPPSLTHLSFSNIELID-DPMPALEKLPVLQVLKLKYLG---RK-----LACSSDGFPKLKVLHLKS  266 (341)
Q Consensus       201 ~~lp~~~~lp~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~---~~-----~~~~~~~~~~L~~L~l~~  266 (341)
                      +.+..++.+ ++|+.|.+.+-.+.. ..+..+-.|++|+.|+++...   ..     .......+|.|+.|+.++
T Consensus       186 ~nl~GIS~L-knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  186 SNLSGISRL-KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cCcHHHhcc-ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            655556677 888888887766532 344566778888888882211   10     111233578888888886

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.40  E-value=3.9e-06  Score=80.13  Aligned_cols=161  Identities=22%  Similarity=0.210  Sum_probs=102.0

Q ss_pred             ChhhhhcCCCccEEecCCccccccchhhcccc-cCceeeecC-------------cCCCCCC-----ceEEeC--C-Ccc
Q 044597           91 PSSFLSSLLNLYTLEMPFSYIDHTADEFWKMS-KLRYLNFGA-------------ITLPAHP-----GKYSLH--P-CCS  148 (341)
Q Consensus        91 p~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~-~L~~L~l~~-------------~~lp~~i-----~~~~~~--~-~~~  148 (341)
                      |-+| ..++.||+|.+++|.+..+ .++..+. .|++|...+             ..+..+.     ...+++  . .. 
T Consensus       102 pi~i-fpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~-  178 (1096)
T KOG1859|consen  102 PISI-FPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL-  178 (1096)
T ss_pred             Ccee-ccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh-
Confidence            6678 7889999999999976653 2333322 344444433             1111111     001111  1 12 


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcc--cccccCCccEEEEEeecCCCC
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILA--EYQFPPSLTHLSFSNIELIDD  226 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~--~~~lp~~L~~L~l~~~~l~~~  226 (341)
                      +++++.-++.|+.|+++.|.   .... +.+..+++|++|+|++|     .+..+|.  ....  +|..|.+++|.+  .
T Consensus       179 mD~SLqll~ale~LnLshNk---~~~v-~~Lr~l~~LkhLDlsyN-----~L~~vp~l~~~gc--~L~~L~lrnN~l--~  245 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNK---FTKV-DNLRRLPKLKHLDLSYN-----CLRHVPQLSMVGC--KLQLLNLRNNAL--T  245 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhh---hhhh-HHHHhcccccccccccc-----hhccccccchhhh--hheeeeecccHH--H
Confidence            33336667788999999885   3333 47889999999999999     8999993  3334  599999999986  5


Q ss_pred             CCccCcCCCCCCeEEEEEeCcEeeec---CCCCCcccEEEEecC
Q 044597          227 PMPALEKLPVLQVLKLKYLGRKLACS---SDGFPKLKVLHLKSM  267 (341)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~  267 (341)
                      .+..+.+|.+|+.|+++|+-..-...   ...+..|+.|.|.+.
T Consensus       246 tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  246 TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            66678899999999995554222111   223556667777663

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.99  E-value=7.2e-05  Score=57.25  Aligned_cols=83  Identities=17%  Similarity=0.182  Sum_probs=38.4

Q ss_pred             hcCCCccEEecCCccccccchhhcc-cccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhH
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWK-MSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSL  174 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~-L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  174 (341)
                      .+..+|...+|++|.++.+|+.+.. .+-...|++.++++.          .+ |.+ +..++.|+.+++++|   ....
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis----------dv-PeE-~Aam~aLr~lNl~~N---~l~~  114 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS----------DV-PEE-LAAMPALRSLNLRFN---PLNA  114 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh----------hc-hHH-HhhhHHhhhcccccC---cccc
Confidence            3444444455555555555544432 234444444443222          23 444 555555555555554   3344


Q ss_pred             HHHHhcCCCCCCEEEEEeC
Q 044597          175 LSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       175 l~~~l~~l~~L~~L~l~~~  193 (341)
                      .|..+..+.++-.|+..++
T Consensus       115 ~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  115 EPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             chHHHHHHHhHHHhcCCCC
Confidence            4444444555555554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.93  E-value=4.7e-05  Score=68.49  Aligned_cols=229  Identities=20%  Similarity=0.118  Sum_probs=116.6

Q ss_pred             eeeeeccCC----CCcccChhhhhcCCCccEEecCCc-ccccc-chhh-cccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           77 RLRENSIIP----SLKSLPSSFLSSLLNLYTLEMPFS-YIDHT-ADEF-WKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        77 ~Lr~L~l~~----~~~~lp~~if~~L~~L~~L~Ls~~-~~~~l-p~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      .||.|++++    ....+-... .++++.+.|++.+| +++.- -.++ ..+.+|++|++..        ...+.+.. +
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~--------c~~iT~~~-L  208 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS--------CSSITDVS-L  208 (483)
T ss_pred             ccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc--------cchhHHHH-H
Confidence            456666652    223333334 66777777777776 33221 1122 3466677776654        01111111 2


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCC--CCC--------------------CCccCc-cc
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESK--MPR--------------------RSNTIL-AE  206 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e--~~~--------------------~l~~lp-~~  206 (341)
                      +.....+++|.+++++++.......+-.-..+++.++.+...+|.|  ++.                    .++... |.
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence            2212345566666666554211122222233333344443333321  000                    333333 21


Q ss_pred             c--cccCCccEEEEEeec-CCCCCCccCc-CCCCCCeEEE-EEe---CcEeeecCCCCCcccEEEEecCCCCCcee--ec
Q 044597          207 Y--QFPPSLTHLSFSNIE-LIDDPMPALE-KLPVLQVLKL-KYL---GRKLACSSDGFPKLKVLHLKSMLWLEEWT--MG  276 (341)
Q Consensus       207 ~--~lp~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l-~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~  276 (341)
                      .  .. ..|+.+..++|. ++...+.+++ +.++|+.|.+ .+.   +.-+..-....+.|+.+++..|....+-.  .-
T Consensus       289 i~~~c-~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  289 IACGC-HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             Hhhhh-hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence            1  23 566777777766 2233334444 3678888877 111   11122223457788888887765444331  12


Q ss_pred             CCCCCcccEEEEecCCCCCcc-----ccccCCCCCCcEEEEecCC
Q 044597          277 IKAMPKLECVIINPCAHLKRI-----PEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       277 ~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~  316 (341)
                      ..++|.|+.+.+++|..++..     ..+-..+..|..+.+++||
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            236899999999999866654     2223447789999999999

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.76  E-value=0.00071  Score=34.61  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=18.0

Q ss_pred             CccEEecCCccccccchhhccc
Q 044597          100 NLYTLEMPFSYIDHTADEFWKM  121 (341)
Q Consensus       100 ~L~~L~Ls~~~~~~lp~~i~~L  121 (341)
                      +|++||+++|.+..+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999988999887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.73  E-value=0.0028  Score=51.94  Aligned_cols=100  Identities=21%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             CCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccc-cccCCccEEEEEeecCCC-CCCccCcCC
Q 044597          158 NLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEY-QFPPSLTHLSFSNIELID-DPMPALEKL  234 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~-~lp~~L~~L~l~~~~l~~-~~~~~l~~l  234 (341)
                      +...++++++.   ...+ ..+..++.|.+|.++.|     ++..+. -+. .+ ++|..|.+.+|.+.. ..+..+..+
T Consensus        43 ~~d~iDLtdNd---l~~l-~~lp~l~rL~tLll~nN-----rIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pLa~~  112 (233)
T KOG1644|consen   43 QFDAIDLTDND---LRKL-DNLPHLPRLHTLLLNNN-----RITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPLASC  112 (233)
T ss_pred             ccceecccccc---hhhc-ccCCCccccceEEecCC-----cceeeccchhhhc-cccceEEecCcchhhhhhcchhccC
Confidence            34455555552   2222 34556677777777766     666664 433 34 678888888877532 345556677


Q ss_pred             CCCCeEEE-EEeCcE----eeecCCCCCcccEEEEecC
Q 044597          235 PVLQVLKL-KYLGRK----LACSSDGFPKLKVLHLKSM  267 (341)
Q Consensus       235 ~~L~~L~l-~~~~~~----~~~~~~~~~~L~~L~l~~~  267 (341)
                      |.|++|.+ ++.-..    -....-.+|+|+.|++.+.
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            78888877 111110    0112235788888888764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=3.3e-05  Score=65.97  Aligned_cols=112  Identities=22%  Similarity=0.254  Sum_probs=70.2

Q ss_pred             CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCcee--ecCCCCCcccEEEE
Q 044597          211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLECVII  288 (341)
Q Consensus       211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l  288 (341)
                      .+.++|+..+|.+  ..++...+++.|++|.|+.+..........+.+|++|.|+. +.++++.  .-..++|+|+.|.+
T Consensus        19 ~~vkKLNcwg~~L--~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGL--DDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCc--cHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence            5667777777775  44445666777777777555544444455677777777775 3344443  12346899999999


Q ss_pred             ecCCCCCcccc-----ccCCCCCCcEEEEecCC-hHHHHHhhh
Q 044597          289 NPCAHLKRIPE-----QLWCLKSLNKLELWWPE-PKLRQQLWE  325 (341)
Q Consensus       289 ~~c~~l~~lp~-----~l~~l~~L~~L~l~~~~-~~~~~~~~~  325 (341)
                      ..||--+.-+.     .+.-||+|+.|+=...- .++.+.++.
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~  138 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD  138 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence            88885555443     34568888888744443 345555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.34  E-value=0.0086  Score=49.14  Aligned_cols=31  Identities=6%  Similarity=0.155  Sum_probs=17.4

Q ss_pred             CccEEecCCccccccchhhcccccCceeeecC
Q 044597          100 NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus       100 ~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~  131 (341)
                      ....+||+.|.+..++ .+..++.|.+|.+.+
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n   73 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN   73 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecC
Confidence            4455666666555543 244555666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.93  E-value=0.0031  Score=54.07  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=18.8

Q ss_pred             hCCCCCCceEEEEeecc--hhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          153 LGRLPNLQNLRIWGDLS--YYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                      +-+++.|++.+++.|..  .....+-.-+++-+.|++|.+++|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            44555555555555541  122223333444555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.00056  Score=58.63  Aligned_cols=81  Identities=22%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh--hCCCCCCceEEEEeec---ch
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI--LGRLPNLQNLRIWGDL---SY  170 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~---~~  170 (341)
                      .+++.|++|.||-|.|..+. .+..+++|+.|+|+.+.++.            +.+.  +.++++|+.|.+..|-   ..
T Consensus        38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s------------ldEL~YLknlpsLr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES------------LDELEYLKNLPSLRTLWLDENPCCGEA  104 (388)
T ss_pred             HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc------------HHHHHHHhcCchhhhHhhccCCccccc
Confidence            57777777777777777773 46677777777777655543            3331  5666777777766543   11


Q ss_pred             hhhHHHHHhcCCCCCCEEE
Q 044597          171 YQSLLSKSLCRLSCLESLK  189 (341)
Q Consensus       171 ~~~~l~~~l~~l~~L~~L~  189 (341)
                      ....-...+.-+++|+.|+
T Consensus       105 g~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  105 GQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             chhHHHHHHHHcccchhcc
Confidence            1111112345566666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.48  E-value=0.0022  Score=54.53  Aligned_cols=12  Identities=33%  Similarity=0.589  Sum_probs=6.3

Q ss_pred             ccccCceeeecC
Q 044597          120 KMSKLRYLNFGA  131 (341)
Q Consensus       120 ~L~~L~~L~l~~  131 (341)
                      .|++|++|.++.
T Consensus        63 ~Lp~LkkL~lsd   74 (260)
T KOG2739|consen   63 KLPKLKKLELSD   74 (260)
T ss_pred             CcchhhhhcccC
Confidence            355555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.33  E-value=0.0031  Score=48.51  Aligned_cols=83  Identities=22%  Similarity=0.221  Sum_probs=54.8

Q ss_pred             CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597           74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      ...+|...+++ +.++++|+.+-.+.+-+++|++++|.+..+|.++..++.|+.|+++.+.+-          .. +.- 
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~----------~~-p~v-  118 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN----------AE-PRV-  118 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc----------cc-hHH-
Confidence            45667777776 567777777634445778888888888888888888888888888774332          11 333 


Q ss_pred             hCCCCCCceEEEEeec
Q 044597          153 LGRLPNLQNLRIWGDL  168 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~  168 (341)
                      +..+.++-.|+..++.
T Consensus       119 i~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  119 IAPLIKLDMLDSPENA  134 (177)
T ss_pred             HHHHHhHHHhcCCCCc
Confidence            4456666666665553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.31  E-value=0.011  Score=28.05  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=10.8

Q ss_pred             CCccEEecCCccccccc
Q 044597           99 LNLYTLEMPFSYIDHTA  115 (341)
Q Consensus        99 ~~L~~L~Ls~~~~~~lp  115 (341)
                      ++|++|++++|.+..+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47889999999888776

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.22  E-value=0.013  Score=49.98  Aligned_cols=108  Identities=24%  Similarity=0.240  Sum_probs=62.6

Q ss_pred             CCcceeeeeccCC-CCcccChhhhhcCCCccEEecCCc--cc-cccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           73 DQEVRLRENSIIP-SLKSLPSSFLSSLLNLYTLEMPFS--YI-DHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        73 ~~l~~Lr~L~l~~-~~~~lp~~if~~L~~L~~L~Ls~~--~~-~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      ..+..+.+|++.+ .++++- .+ -.|++|++|++|.|  .+ ..++....++++|++|+++++.+..      +  .. 
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~------l--st-  108 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD------L--ST-  108 (260)
T ss_pred             ccccchhhhhhhccceeecc-cC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc------c--cc-
Confidence            3445555555542 333332 22 56889999999998  32 3455556667999999988833321      0  22 


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhh-HHHHHhcCCCCCCEEEEEe
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQS-LLSKSLCRLSCLESLKLAN  192 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~  192 (341)
                      ++. +..+.+|..|++.+|...... .--..+.-+++|+.|+-..
T Consensus       109 l~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  109 LRP-LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             cch-hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            444 677778888888887622211 1112345566676666544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.87  E-value=0.0019  Score=61.49  Aligned_cols=89  Identities=20%  Similarity=0.143  Sum_probs=45.3

Q ss_pred             hcCCCccEEecCCc--cccccc----hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC-CCCCCceEEEEeec
Q 044597           96 SSLLNLYTLEMPFS--YIDHTA----DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG-RLPNLQNLRIWGDL  168 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~--~~~~lp----~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~  168 (341)
                      ...++|+.|+++++  .+...+    .....+.+|+.|+++...        .+.... +.. +. .+++|++|.+.++.
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--------~isd~~-l~~-l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG--------LVTDIG-LSA-LASRCPNLETLSLSNCS  280 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh--------ccCchh-HHH-HHhhCCCcceEccCCCC
Confidence            56666666666652  111111    122334666666666511        011122 333 32 36677777755554


Q ss_pred             chhhhHHHHHhcCCCCCCEEEEEeCC
Q 044597          169 SYYQSLLSKSLCRLSCLESLKLANES  194 (341)
Q Consensus       169 ~~~~~~l~~~l~~l~~L~~L~l~~~~  194 (341)
                      .....++......+++|+.|++++|.
T Consensus       281 ~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  281 NLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             ccchhHHHHHHHhcCcccEEeeecCc
Confidence            32334555555666777777777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.65  E-value=0.053  Score=41.42  Aligned_cols=59  Identities=15%  Similarity=0.247  Sum_probs=26.9

Q ss_pred             cCCcceeeeeccCCCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC
Q 044597           72 MDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA  131 (341)
Q Consensus        72 ~~~l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~  131 (341)
                      +..+.+|+.+.+...+..++...|..+++|+.+.+..+ +..++. .+..+.+|+.+.+..
T Consensus         8 F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    8 FYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            34445555565555566666666666666666666654 444443 345555566666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=0.0053  Score=50.32  Aligned_cols=62  Identities=21%  Similarity=0.368  Sum_probs=44.6

Q ss_pred             CCCcccEEEEecCCCCCceeec--CCCCCcccEEEEecCCCCCccc-cccCCCCCCcEEEEecCC
Q 044597          255 GFPKLKVLHLKSMLWLEEWTMG--IKAMPKLECVIINPCAHLKRIP-EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       255 ~~~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  316 (341)
                      .+++++.|.+.+|..+.+|..+  .+-.|+|+.|++++|+.+++-. .++..+++|+.|.+.+.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            4566777777777777776532  2357889999999998877632 356778888888888866

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.51  E-value=0.0029  Score=60.18  Aligned_cols=111  Identities=23%  Similarity=0.190  Sum_probs=59.2

Q ss_pred             CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEe-CCCCCCCCccCc-----ccccccCCccEEEEEeec-CCCCC
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLAN-ESKMPRRSNTIL-----AEYQFPPSLTHLSFSNIE-LIDDP  227 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~-~~e~~~~l~~lp-----~~~~lp~~L~~L~l~~~~-l~~~~  227 (341)
                      .+++|+.|.+..+.......+.......++|+.|+++. +.    .....+     ..... ++|+.|+++.|. ++...
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCL----LITLSPLLLLLLLSIC-RKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccc----ccccchhHhhhhhhhc-CCcCccchhhhhccCchh
Confidence            46777777777665222222445566777777777765 21    111111     11234 667777777776 44444


Q ss_pred             CccCcC-CCCCCeEEEE-Ee---CcEeeecCCCCCcccEEEEecCCCC
Q 044597          228 MPALEK-LPVLQVLKLK-YL---GRKLACSSDGFPKLKVLHLKSMLWL  270 (341)
Q Consensus       228 ~~~l~~-l~~L~~L~l~-~~---~~~~~~~~~~~~~L~~L~l~~~~~l  270 (341)
                      +..+.. +++|+.|.+. +.   +..+......+++|++|++++|..+
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            444433 6677777651 11   1111122335667777777766654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.37  E-value=0.07  Score=28.23  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=17.9

Q ss_pred             CCCccEEecCCccccccchhh
Q 044597           98 LLNLYTLEMPFSYIDHTADEF  118 (341)
Q Consensus        98 L~~L~~L~Ls~~~~~~lp~~i  118 (341)
                      |++|++|+|++|.+..+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            568899999999999998764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.37  E-value=0.07  Score=28.23  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=17.9

Q ss_pred             CCCccEEecCCccccccchhh
Q 044597           98 LLNLYTLEMPFSYIDHTADEF  118 (341)
Q Consensus        98 L~~L~~L~Ls~~~~~~lp~~i  118 (341)
                      |++|++|+|++|.+..+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            568899999999999998764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.54  E-value=0.12  Score=39.46  Aligned_cols=86  Identities=14%  Similarity=0.269  Sum_probs=41.5

Q ss_pred             ccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEee
Q 044597           89 SLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGD  167 (341)
Q Consensus        89 ~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  167 (341)
                      ++++..|.++++|+.+.+.. .+..++. .+..+++|+.+.+... +.          .. ...++..+++|+++.+.+.
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~----------~i-~~~~F~~~~~l~~i~~~~~   68 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT----------SI-GDNAFSNCKSLESITFPNN   68 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS----------CE--TTTTTT-TT-EEEEETST
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc----------cc-ceeeeeccccccccccccc
Confidence            46777778888999998875 4555644 4677778888877651 11          11 1111666666777777431


Q ss_pred             cchhhhHHH-HHhcCCCCCCEEEEE
Q 044597          168 LSYYQSLLS-KSLCRLSCLESLKLA  191 (341)
Q Consensus       168 ~~~~~~~l~-~~l~~l~~L~~L~l~  191 (341)
                          ...++ ..+..+++|+.+.+.
T Consensus        69 ----~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   69 ----LKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             ----T-EE-TTTTTT-TTECEEEET
T ss_pred             ----ccccccccccccccccccccC
Confidence                11111 234456666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.23  E-value=0.14  Score=44.32  Aligned_cols=187  Identities=16%  Similarity=0.070  Sum_probs=101.0

Q ss_pred             hcCCCccEEecCCccc-cccchh----hcccccCceeeecCcCCCCCCceEEeCCCc---------chhhhhCCCCCCce
Q 044597           96 SSLLNLYTLEMPFSYI-DHTADE----FWKMSKLRYLNFGAITLPAHPGKYSLHPCC---------STEEILGRLPNLQN  161 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~-~~lp~~----i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~---------~~~~~l~~l~~L~~  161 (341)
                      -++++|+..+||.|.+ .+.|..    |.+-..|.+|.++++-+-+      +.+..         ..+. ..+-+.|++
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp------~aG~rigkal~~la~nKK-aa~kp~Le~  161 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP------IAGGRIGKALFHLAYNKK-AADKPKLEV  161 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc------cchhHHHHHHHHHHHHhh-hccCCCceE
Confidence            6889999999999933 334443    5566788888888722211      00111         0111 234466777


Q ss_pred             EEEEeecc-hhh-hHHHHHhcCCCCCCEEEEEeCCCCCCCCcc-----Cc--ccccccCCccEEEEEeecCCCCCC----
Q 044597          162 LRIWGDLS-YYQ-SLLSKSLCRLSCLESLKLANESKMPRRSNT-----IL--AEYQFPPSLTHLSFSNIELIDDPM----  228 (341)
Q Consensus       162 L~l~~~~~-~~~-~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~-----lp--~~~~lp~~L~~L~l~~~~l~~~~~----  228 (341)
                      ..+..|+. +.. ......+..-.+|+.+.+..|     .+..     +-  .+... .+|+.|++.+|.++...-    
T Consensus       162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN-----gIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         162 VICGRNRLENGSKELSAALLESHENLKEVKIQQN-----GIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             EEeccchhccCcHHHHHHHHHhhcCceeEEeeec-----CcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHH
Confidence            77666651 111 122223444467777777765     2221     11  12245 788888888887644322    


Q ss_pred             ccCcCCCCCCeEEEEEe-----CcEee---ecCCCCCcccEEEEecCCCCCcee-------ecCCCCCcccEEEEecCCC
Q 044597          229 PALEKLPVLQVLKLKYL-----GRKLA---CSSDGFPKLKVLHLKSMLWLEEWT-------MGIKAMPKLECVIINPCAH  293 (341)
Q Consensus       229 ~~l~~l~~L~~L~l~~~-----~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~l~~L~~L~l~~c~~  293 (341)
                      .++..++.|++|+++.+     +....   +....+|+|..|...+...-..+.       +..+++|-|..|.+.+|+ 
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-  314 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-  314 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-
Confidence            23456677788877221     11100   112246777777766522111111       234577888888888777 


Q ss_pred             CCc
Q 044597          294 LKR  296 (341)
Q Consensus       294 l~~  296 (341)
                      ++.
T Consensus       315 ~~E  317 (388)
T COG5238         315 IKE  317 (388)
T ss_pred             chh
Confidence            444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.00  E-value=0.034  Score=45.72  Aligned_cols=16  Identities=19%  Similarity=0.210  Sum_probs=7.7

Q ss_pred             hCCCCCCceEEEEeec
Q 044597          153 LGRLPNLQNLRIWGDL  168 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~  168 (341)
                      +.+++.++.|.+.+|.
T Consensus       121 L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCK  136 (221)
T ss_pred             Hhccchhhhheecccc
Confidence            3444444455555544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.53  E-value=1.3  Score=23.47  Aligned_cols=17  Identities=29%  Similarity=0.360  Sum_probs=13.5

Q ss_pred             CCCccEEecCCcccccc
Q 044597           98 LLNLYTLEMPFSYIDHT  114 (341)
Q Consensus        98 L~~L~~L~Ls~~~~~~l  114 (341)
                      +++|+.|+++.|.|..+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            46889999999977655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 43/244 (17%), Positives = 86/244 (35%), Gaps = 43/244 (17%)

Query: 86  SLKSLPSSF-LSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA---ITLPAHPGKY 141
           +LK+       ++      LE+    +    D+ +++S L+++   A   + LP      
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP------ 120

Query: 142 SLHPCCSTEEILGRLPNLQNLRIWGDLSYYQ-SLLSKSLCRLSCLESLKLANESKMPR-- 198
                    + + +   L+ L     L+      L  S+  L+ L  L +    ++    
Sbjct: 121 ---------DTMQQFAGLETL----TLARNPLRALPASIASLNRLRELSIRACPELTELP 167

Query: 199 ---RSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDG 255
               S     E+Q   +L  L      +   P  ++  L  L+ LK++            
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRN------SPLSA 220

Query: 256 FP-------KLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN 308
                    KL+ L L+    L  +         L+ +I+  C++L  +P  +  L  L 
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 309 KLEL 312
           KL+L
Sbjct: 281 KLDL 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 65/394 (16%), Positives = 109/394 (27%), Gaps = 146/394 (37%)

Query: 1   QLYQL-WIAEGFIPDNNEAITEKYLEQLI--NGAFVDAGKRSDISRINTSSIPGSCSPAL 57
              +L W          E + +K++E+++  N  F+       +S I T        P++
Sbjct: 63  GTLRLFWTLL----SKQEEMVQKFVEEVLRINYKFL-------MSPIKTEQR----QPSM 107

Query: 58  LTVAFKGEF-----IISPIMDQEV-RLRE-NSIIPSLKSL-PSSFL----------SSL- 98
           +T  +  +               V RL+    +  +L  L P+  +          + + 
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 99  ---LNLYTLE--MPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL 153
                 Y ++  M F  I      FW       LN                 C S E + 
Sbjct: 168 LDVCLSYKVQCKMDFK-I------FW-------LNLKN--------------CNSPETV- 198

Query: 154 GRLPNLQNLRIWGDLSYYQSLLSKSLC-RLSCLESLKLANESKMPRRSNTILAEYQFPPS 212
             L  LQ L        YQ  +  +   R     ++KL   S        +L    +   
Sbjct: 199 --LEMLQKL-------LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENC 246

Query: 213 LTHL----------SFS----------NIELIDDPMPALEKLPVLQVLKLKYLGRKLACS 252
           L  L          +F+            ++ D    A      L               
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH------------ 294

Query: 253 SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL------W---- 302
           S      +V  L    +L+      + +P+      NP   L  I E +      W    
Sbjct: 295 SMTLTPDEVKSLLL-KYLD---CRPQDLPREVLT-TNPRR-LSIIAESIRDGLATWDNWK 348

Query: 303 ---CLK-------SLNKLELWWPEPKLRQQLWEF 326
              C K       SLN LE      + R+     
Sbjct: 349 HVNCDKLTTIIESSLNVLE----PAEYRKMFDRL 378

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 25/198 (12%), Positives = 57/198 (28%), Gaps = 14/198 (7%)

Query: 74  QEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAI 132
            E+ ++  S+    ++  S  L S+ +++ L +  S      +     +S +RYL     
Sbjct: 151 NELEIKALSL----RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 133 TLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLAN 192
            L                    +    +   +  +       L + +  LS +E      
Sbjct: 207 NLARFQ---FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 193 ESKMPRRSNTILAEYQFP----PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-R 247
                   +      +       ++  L      L  D       L  ++ + ++     
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 248 KLACSS-DGFPKLKVLHL 264
            + CS       L+ L L
Sbjct: 324 LVPCSFSQHLKSLEFLDL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 43/205 (20%)

Query: 74  QEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFG--A 131
           + + L+++       ++ S+       L  L++  +++         +S L+ L      
Sbjct: 257 ESINLQKHYF----FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312

Query: 132 ITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSY---YQSLLSKSLCRLSCLESL 188
                     +L             P+L +L     +        L +  L  L  L  L
Sbjct: 313 FE--------NLCQ-----ISASNFPSLTHL----SIKGNTKRLELGTGCLENLENLREL 355

Query: 189 KLANESKMPRRSNTI----LAEYQFP--PSLTHLSFSNIELIDDPMPALEKLPVLQVLKL 242
            L++        + I        Q      L  L+ S  E +     A ++ P L++L L
Sbjct: 356 DLSH--------DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 243 KY--LGRKLACSS-DGFPKLKVLHL 264
            +  L  K A S       LKVL+L
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNL 432

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 45/258 (17%), Positives = 85/258 (32%), Gaps = 43/258 (16%)

Query: 24  LEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTVAFKGEFIISPIMD------QEVR 77
           +E++ + ++    +  ++        P     +L  + F      +   +      + + 
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 78  LRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFG--AITLP 135
           L  N +  S K   S       +L  L++ F+ +   +  F  + +L +L+F    +   
Sbjct: 354 LSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ- 410

Query: 136 AHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANE 193
                       S   +   L NL  L    D+S+   +   +     LS LE LK+A  
Sbjct: 411 -----------MSEFSVFLSLRNLIYL----DISHTHTRVAFNGIFNGLSSLEVLKMAG- 454

Query: 194 SKMPRRSNTILAEY-----QFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKY--LG 246
                  N+    +         +LT L  S  +L      A   L  LQVL + +    
Sbjct: 455 -------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 247 RKLACSSDGFPKLKVLHL 264
                       L+VL  
Sbjct: 508 SLDTFPYKCLNSLQVLDY 525

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 14/124 (11%)

Query: 155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-----LAEYQF 209
             PNL++L I         +       L  LE L L    +       +     L     
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 210 PPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYL---------GRKLACSSDGFPKLK 260
            P+L  L   + E  +  +    +  +L  L+   +          R L    D    LK
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 261 VLHL 264
            +++
Sbjct: 311 FINM 314

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 52/234 (22%)

Query: 74  QEVRLRENSII---------------------------PSLKSLPSSFLSSLLNLYTLEM 106
            E+ LR N                               +L+    S +  L ++   E 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 107 PFSYIDHT---ADEFWKMSKLRYLNFGA---ITLPAHPGKYSLHP-----CCSTEEILGR 155
             +Y +       +F  ++ +  ++        L   P  +         C   +     
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 156 LPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE--SKMPRRSNTILAEYQFPPSL 213
           LP L++L     L+  +  +S     L  L  L L+    S     S + L       SL
Sbjct: 327 LPFLKSL----TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG----TNSL 378

Query: 214 THLSFSNIELIDDPMPALEKLPVLQVLKLKY--LGRKLACSS-DGFPKLKVLHL 264
            HL  S    I         L  LQ L  ++  L R    S+     KL  L +
Sbjct: 379 RHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.65
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.61
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.45
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.38
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.38
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.38
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.32
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.92
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.91
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.81
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.8
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.8
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.36
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.87
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.44

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=4e-25  Score=198.98  Aligned_cols=220  Identities=21%  Similarity=0.192  Sum_probs=188.3

Q ss_pred             cceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      ..+++.|+++ +.+..+|..+ +++++|++|++++|.+..+|..++++++|++|+++++.+.          .. +.. +
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~----------~l-p~~-l  146 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR----------AL-PAS-I  146 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC----------CC-CGG-G
T ss_pred             ccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc----------cC-cHH-H
Confidence            4678899998 5889999999 8899999999999999999999999999999999984443          33 455 9


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhc---------CCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLC---------RLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~---------~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l  223 (341)
                      +++++|++|++++|.  ....+|..+.         ++++|+.|++++|     .++.+| ++..+ ++|++|++++|.+
T Consensus       147 ~~l~~L~~L~L~~n~--~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-----~l~~lp~~l~~l-~~L~~L~L~~N~l  218 (328)
T 4fcg_A          147 ASLNRLRELSIRACP--ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-----GIRSLPASIANL-QNLKSLKIRNSPL  218 (328)
T ss_dssp             GGCTTCCEEEEEEET--TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-----CCCCCCGGGGGC-TTCCEEEEESSCC
T ss_pred             hcCcCCCEEECCCCC--CccccChhHhhccchhhhccCCCCCEEECcCC-----CcCcchHhhcCC-CCCCEEEccCCCC
Confidence            999999999999986  4455555554         4999999999999     888999 89999 9999999999998


Q ss_pred             CCCCCccCcCCCCCCeEEEEE--eCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccccc
Q 044597          224 IDDPMPALEKLPVLQVLKLKY--LGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL  301 (341)
Q Consensus       224 ~~~~~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l  301 (341)
                      +. .++.++.+++|++|+++.  .....+...+.+++|++|++++++....++...+.+++|+.|++++|+..+.+|.++
T Consensus       219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            64 445689999999999932  223344556789999999999998888898888899999999999999999999999


Q ss_pred             CCCCCCcEEEEecCC
Q 044597          302 WCLKSLNKLELWWPE  316 (341)
Q Consensus       302 ~~l~~L~~L~l~~~~  316 (341)
                      +++++|+.+.+....
T Consensus       298 ~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          298 AQLPANCIILVPPHL  312 (328)
T ss_dssp             GGSCTTCEEECCGGG
T ss_pred             hhccCceEEeCCHHH
Confidence            999999999887543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=2.7e-22  Score=180.53  Aligned_cols=199  Identities=19%  Similarity=0.236  Sum_probs=170.4

Q ss_pred             cCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHH
Q 044597           97 SLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLS  176 (341)
Q Consensus        97 ~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~  176 (341)
                      ...++++|++++|.+..+|..++++++|++|+++++.+.          .. +.. ++++++|++|++++|.   ...+|
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~----------~l-p~~-~~~l~~L~~L~Ls~n~---l~~lp  143 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM----------EL-PDT-MQQFAGLETLTLARNP---LRALP  143 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC----------CC-CSC-GGGGTTCSEEEEESCC---CCCCC
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc----------ch-hHH-HhccCCCCEEECCCCc---cccCc
Confidence            458899999999999999999999999999999984443          33 445 8899999999999995   44778


Q ss_pred             HHhcCCCCCCEEEEEeCCCCCCCCccCc-cccc---------ccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC
Q 044597          177 KSLCRLSCLESLKLANESKMPRRSNTIL-AEYQ---------FPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG  246 (341)
Q Consensus       177 ~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~---------lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  246 (341)
                      ..++.+++|+.|++++|.    ..+.+| .+..         + ++|++|++++|.++ ..+..++.+++|++|+++.+.
T Consensus       144 ~~l~~l~~L~~L~L~~n~----~~~~~p~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          144 ASIASLNRLRELSIRACP----ELTELPEPLASTDASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             GGGGGCTTCCEEEEEEET----TCCCCCSCSEEEC-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred             HHHhcCcCCCEEECCCCC----CccccChhHhhccchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence            889999999999999976    777788 6544         8 99999999999986 444569999999999994333


Q ss_pred             -cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          247 -RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       247 -~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                       ..++.....+++|++|+++++.....++...+.+++|++|++++|...+.+|..+.++++|++|++++|+
T Consensus       218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence             2333445678999999999988888888888899999999999999999999999999999999999987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=3.9e-22  Score=199.06  Aligned_cols=254  Identities=18%  Similarity=0.151  Sum_probs=151.7

Q ss_pred             cceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCcccc-ccchhhcccccCceeeecCc----CCCCCC------ceE
Q 044597           75 EVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYID-HTADEFWKMSKLRYLNFGAI----TLPAHP------GKY  141 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~i~~L~~L~~L~l~~~----~lp~~i------~~~  141 (341)
                      +.+|++|++. +.+. .+|..+ +++++|++|++++|.+. .+|..++.+++|++|+++++    .+|..+      +.+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence            5667777776 3444 566666 77777777777777554 56777777777777777762    222222      334


Q ss_pred             EeCC-----CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-cCc-ccccccCCcc
Q 044597          142 SLHP-----CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-TIL-AEYQFPPSLT  214 (341)
Q Consensus       142 ~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~lp-~~~~lp~~L~  214 (341)
                      .+++     .. +.. ++++++|++|++++|.  ....+|..++.+++|+.|++++|     .+. .+| .+..+ ++|+
T Consensus       472 ~L~~N~l~~~~-p~~-l~~l~~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~L~~N-----~l~~~~p~~l~~l-~~L~  541 (768)
T 3rgz_A          472 ILDFNDLTGEI-PSG-LSNCTNLNWISLSNNR--LTGEIPKWIGRLENLAILKLSNN-----SFSGNIPAELGDC-RSLI  541 (768)
T ss_dssp             ECCSSCCCSCC-CGG-GGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSS-----CCEEECCGGGGGC-TTCC
T ss_pred             EecCCcccCcC-CHH-HhcCCCCCEEEccCCc--cCCcCChHHhcCCCCCEEECCCC-----cccCcCCHHHcCC-CCCC
Confidence            4332     22 334 6667777777777665  33355566667777777777776     443 456 66667 6777


Q ss_pred             EEEEEeecCCCCCCc-----------------------------------------------------------------
Q 044597          215 HLSFSNIELIDDPMP-----------------------------------------------------------------  229 (341)
Q Consensus       215 ~L~l~~~~l~~~~~~-----------------------------------------------------------------  229 (341)
                      .|++++|.+.+..+.                                                                 
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence            777776654322111                                                                 


Q ss_pred             -----cCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccC
Q 044597          230 -----ALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLW  302 (341)
Q Consensus       230 -----~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~  302 (341)
                           .++.+++|++|+++.+.  ..++...+.+++|+.|+++++.--..+|...+.+++|+.|++++|..-+.+|..+.
T Consensus       622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence                 23345566666663222  12334455677888888887554446777777888888888888885557888888


Q ss_pred             CCCCCcEEEEecCCh---------------------------HHHHHhhhccccccccccccccC
Q 044597          303 CLKSLNKLELWWPEP---------------------------KLRQQLWEFEDKEQYGIQLYPYG  340 (341)
Q Consensus       303 ~l~~L~~L~l~~~~~---------------------------~~~~~~~~~~~~~~~~i~~ip~~  340 (341)
                      ++++|++|++++|+=                           -+ ..|....+++|++|+|+|.+
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC-------------
T ss_pred             CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCcccc
Confidence            888899988887630                           11 14677778999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=1.1e-22  Score=181.99  Aligned_cols=219  Identities=18%  Similarity=0.169  Sum_probs=95.9

Q ss_pred             eeeeeccC-CCCc---ccChhhhhcCCCccEEecCC-cccc-ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597           77 RLRENSII-PSLK---SLPSSFLSSLLNLYTLEMPF-SYID-HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE  150 (341)
Q Consensus        77 ~Lr~L~l~-~~~~---~lp~~if~~L~~L~~L~Ls~-~~~~-~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~  150 (341)
                      +++.|+++ +.+.   .+|..+ +++++|++|++++ |.+. .+|..++++++|++|+++++.+.         +.. +.
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---------~~~-p~  119 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---------GAI-PD  119 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---------EEC-CG
T ss_pred             eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---------CcC-CH
Confidence            44555554 2333   355555 5555555555553 4332 44555555555555555542221         011 22


Q ss_pred             hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-cCc-ccccccCCccEEEEEeecCCCCCC
Q 044597          151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-TIL-AEYQFPPSLTHLSFSNIELIDDPM  228 (341)
Q Consensus       151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~lp-~~~~lp~~L~~L~l~~~~l~~~~~  228 (341)
                      . ++++++|++|+++++.  ....+|..+..+++|+.|++++|     .+. .+| .+..++++|+.|++++|.+....+
T Consensus       120 ~-~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~N-----~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~  191 (313)
T 1ogq_A          120 F-LSQIKTLVTLDFSYNA--LSGTLPPSISSLPNLVGITFDGN-----RISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             G-GGGCTTCCEEECCSSE--EESCCCGGGGGCTTCCEEECCSS-----CCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             H-HhCCCCCCEEeCCCCc--cCCcCChHHhcCCCCCeEECcCC-----cccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence            2 4455555555555443  11233444445555555555554     333 344 444441255555555555433333


Q ss_pred             ccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCC
Q 044597          229 PALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKS  306 (341)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  306 (341)
                      ..++.++ |++|+++.+.  ...+.....+++|++|+++++. +.......+.+++|++|++++|..-+.+|..+..+++
T Consensus       192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  269 (313)
T 1ogq_A          192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence            3444443 5555541111  0111223344555555554422 2222222334455555555555422234444444555


Q ss_pred             CcEEEEecCC
Q 044597          307 LNKLELWWPE  316 (341)
Q Consensus       307 L~~L~l~~~~  316 (341)
                      |++|++++|.
T Consensus       270 L~~L~Ls~N~  279 (313)
T 1ogq_A          270 LHSLNVSFNN  279 (313)
T ss_dssp             CCEEECCSSE
T ss_pred             CCEEECcCCc
Confidence            5555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=2.5e-21  Score=178.31  Aligned_cols=109  Identities=15%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      +..+++|++|++. +.+..+|...|+.+++|++|++++|.+..+|. .++.+++|++|+++++.+.          .. +
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l-~  133 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------SL-P  133 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-C
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC----------cC-C
Confidence            4445666666665 35566555333666666666666666665543 3566666666666663322          22 3


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                      ...++++++|++|+++++..  ....+..++.+++|+.|+++++
T Consensus       134 ~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          134 RGIFHNTPKLTTLSMSNNNL--ERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCC--CBCCTTTTSSCTTCCEEECCSS
T ss_pred             HHHhcCCCCCcEEECCCCcc--CccChhhccCCCCCCEEECCCC
Confidence            33257889999999988852  2222345788899999999886

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=7.6e-21  Score=175.04  Aligned_cols=220  Identities=18%  Similarity=0.167  Sum_probs=144.6

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhh-cccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEF-WKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      .+..+.+|++|+++ +.+..+|...|+++++|++|++++|.+..+|..+ ..+++|++|+++++.+.          ...
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~----------~~~  157 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE----------RIE  157 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------BCC
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC----------ccC
Confidence            67778888888887 5777777665588888888888888888888764 78888888888873332          110


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCC----------------------------------------CCCCEE
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRL----------------------------------------SCLESL  188 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l----------------------------------------~~L~~L  188 (341)
                      +.. ++.+++|++|+++++.....     .++.+                                        ++|+.|
T Consensus       158 ~~~-~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L  231 (390)
T 3o6n_A          158 DDT-FQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL  231 (390)
T ss_dssp             TTT-TSSCTTCCEEECCSSCCSBC-----CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred             hhh-ccCCCCCCEEECCCCcCCcc-----ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence            222 55555555555555431111     11122                                        344445


Q ss_pred             EEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEe-CcEeeecCCCCCcccEEEEecC
Q 044597          189 KLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYL-GRKLACSSDGFPKLKVLHLKSM  267 (341)
Q Consensus       189 ~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~  267 (341)
                      +++++     .+...+++..+ ++|++|++++|.+.......++.+++|++|+++.+ -..++.....+++|++|+++++
T Consensus       232 ~l~~n-----~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          232 KLQHN-----NLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             ECCSS-----CCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred             ECCCC-----CCcccHHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence            55444     44444455666 77777777777765555566777777888777222 2333444456778888888874


Q ss_pred             CCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          268 LWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       268 ~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                       .+..++...+.+++|+.|++.+|+ +..+|  +..+++|+.|++++|+
T Consensus       306 -~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          306 -HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             -CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             -cceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence             466666555667888888888887 66665  5678888888888887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=177.94  Aligned_cols=225  Identities=16%  Similarity=0.134  Sum_probs=149.9

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      .+..+.+|++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +.++++|++|+++++.+.          ...
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----------~~~  120 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV----------ILL  120 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC----------EEC
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc----------cCC
Confidence            45556666666665 355555332236666666666666666666543 466666666666653332          110


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCC
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDD  226 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~  226 (341)
                      +.. +..+++|++|+++++..  ....+..+..+++|+.|++++|     .++.+|  .+..+ ++|+.|++++|.+...
T Consensus       121 ~~~-~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~l~~l-~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          121 DYM-FQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKC-----NLTSIPTEALSHL-HGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTT-TTTCTTCCEEEECCTTC--CEECTTSSTTCTTCCEEEEESC-----CCSSCCHHHHTTC-TTCCEEEEESCCCCEE
T ss_pred             hhH-ccccccCCEEECCCCcc--ceeChhhccCCCCCCEEECCCC-----cCcccChhHhccc-CCCcEEeCCCCcCcEe
Confidence            233 77888888888887752  1222345778888888888887     777777  57778 8888888888887665


Q ss_pred             CCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCccc-cccC
Q 044597          227 PMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRIP-EQLW  302 (341)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~  302 (341)
                      ....+..+++|+.|+++.+.  ...+.......+|++|+++++ .+..++. ..+.+++|+.|++++|. +..++ ..+.
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  269 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLH  269 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCT
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhcc
Confidence            66678888888888883322  222222334458888888884 4666652 34578899999999988 66654 4567


Q ss_pred             CCCCCcEEEEecCC
Q 044597          303 CLKSLNKLELWWPE  316 (341)
Q Consensus       303 ~l~~L~~L~l~~~~  316 (341)
                      ++++|++|++++|.
T Consensus       270 ~l~~L~~L~L~~n~  283 (477)
T 2id5_A          270 ELLRLQEIQLVGGQ  283 (477)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             ccccCCEEECCCCc
Confidence            88999999999885

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=1.2e-21  Score=175.17  Aligned_cols=228  Identities=16%  Similarity=0.117  Sum_probs=184.6

Q ss_pred             ccccccCCcceeeeeccC--CCCc-ccChhhhhcCCCccEEecCCcccc-ccchhhcccccCceeeecCcCCCCCCceEE
Q 044597           67 IISPIMDQEVRLRENSII--PSLK-SLPSSFLSSLLNLYTLEMPFSYID-HTADEFWKMSKLRYLNFGAITLPAHPGKYS  142 (341)
Q Consensus        67 ~~~~~~~~l~~Lr~L~l~--~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~  142 (341)
                      ...+.+..+++|++|+++  +.+. .+|..+ +++++|++|++++|.+. .+|..+.++++|++|+++++.+.       
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-------  138 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-------  138 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-------
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-------
Confidence            345678889999999997  4665 688888 99999999999999887 78999999999999999983222       


Q ss_pred             eCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCC-CCCEEEEEeCCCCCCCCc-cCc-ccccccCCccEEEEE
Q 044597          143 LHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLS-CLESLKLANESKMPRRSN-TIL-AEYQFPPSLTHLSFS  219 (341)
Q Consensus       143 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~-~L~~L~l~~~~e~~~~l~-~lp-~~~~lp~~L~~L~l~  219 (341)
                        +.. +.. ++.+++|++|++++|.  ....+|..+..++ +|+.|++++|     .+. .+| .+..+ . |+.|+++
T Consensus       139 --~~~-p~~-~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N-----~l~~~~~~~~~~l-~-L~~L~Ls  205 (313)
T 1ogq_A          139 --GTL-PPS-ISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRN-----RLTGKIPPTFANL-N-LAFVDLS  205 (313)
T ss_dssp             --SCC-CGG-GGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSS-----EEEEECCGGGGGC-C-CSEEECC
T ss_pred             --CcC-ChH-HhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCC-----eeeccCChHHhCC-c-ccEEECc
Confidence              123 455 8999999999999986  3336778888998 9999999998     666 577 78888 6 9999999


Q ss_pred             eecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccc
Q 044597          220 NIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIP  298 (341)
Q Consensus       220 ~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp  298 (341)
                      +|.+.......++.+++|+.|+++.+. .........+++|++|+++++.-...++...+.+++|+.|++++|..-+.+|
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999877777789999999999993222 1122335678999999999855333667677789999999999998444677


Q ss_pred             cccCCCCCCcEEEEecCC
Q 044597          299 EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       299 ~~l~~l~~L~~L~l~~~~  316 (341)
                      .. .++++|+.+++.+|+
T Consensus       286 ~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSS
T ss_pred             CC-ccccccChHHhcCCC
Confidence            65 789999999999988

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=2.7e-20  Score=167.45  Aligned_cols=230  Identities=17%  Similarity=0.179  Sum_probs=172.0

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC---cCCCCCC----ceEEeCC-
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA---ITLPAHP----GKYSLHP-  145 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~---~~lp~~i----~~~~~~~-  145 (341)
                      ..+++|+++ +.+..+|...|+++++|++|++++|.+..+ |..++.+++|++|++++   ..+|..+    +.+.+++ 
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n  131 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  131 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence            467778887 577777765448888888888888877776 67788888888888877   3444333    5566654 


Q ss_pred             ---CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEee
Q 044597          146 ---CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNI  221 (341)
Q Consensus       146 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~  221 (341)
                         .. ++..++++++|++|+++++........+..+..+++|+.|+++++     .++.+| .+  . ++|++|++++|
T Consensus       132 ~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-----~l~~l~~~~--~-~~L~~L~l~~n  202 (330)
T 1xku_A          132 EITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-----NITTIPQGL--P-PSLTELHLDGN  202 (330)
T ss_dssp             CCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-----CCCSCCSSC--C-TTCSEEECTTS
T ss_pred             ccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-----ccccCCccc--c-ccCCEEECCCC
Confidence               23 333388999999999998864333345567888999999999988     788888 43  2 78999999999


Q ss_pred             cCCCCCCccCcCCCCCCeEEEEEeCc-Eeee-cCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccc
Q 044597          222 ELIDDPMPALEKLPVLQVLKLKYLGR-KLAC-SSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPE  299 (341)
Q Consensus       222 ~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~  299 (341)
                      .++......++.+++|++|+++.+.. .... ....+++|++|+++++ .+..++.....+++|++|++.+|+ ++.+|.
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~  280 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGS  280 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccCh
Confidence            98766667889999999999943332 2221 3456889999999985 577888777889999999999998 777764


Q ss_pred             ccC-------CCCCCcEEEEecCC
Q 044597          300 QLW-------CLKSLNKLELWWPE  316 (341)
Q Consensus       300 ~l~-------~l~~L~~L~l~~~~  316 (341)
                      ...       ..++|+.|++.++|
T Consensus       281 ~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          281 NDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             TSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             hhcCCcccccccccccceEeecCc
Confidence            321       24788999999998

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.1e-20  Score=183.44  Aligned_cols=107  Identities=21%  Similarity=0.198  Sum_probs=70.0

Q ss_pred             ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE-EEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcc
Q 044597          205 AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL-KYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKL  283 (341)
Q Consensus       205 ~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L  283 (341)
                      ++..+ ++|+.|++++|.+....+..++.+++|+.|++ .+....++.....+++|++|+++++ .+..++...+.+++|
T Consensus       249 ~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L  326 (597)
T 3oja_B          249 WLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRL  326 (597)
T ss_dssp             GGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTC
T ss_pred             hhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCC
Confidence            45556 66777777777665555556667777777777 2222333344455777777777764 455666555667777


Q ss_pred             cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          284 ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       284 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +.|++++|. +..+|  +..+++|+.|++++|+
T Consensus       327 ~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          327 ENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             CEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence            777777777 55554  5667888888888887

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.1e-20  Score=183.40  Aligned_cols=223  Identities=16%  Similarity=0.154  Sum_probs=150.9

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      +..+++|++|+++ +.+..+|...|+.+++|++|+|++|.+..+|. .++.+++|++|+++++.+.          .. +
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l-~  139 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------SL-P  139 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-C
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC----------CC-C
Confidence            4455667777776 45666655333777777777777776666654 3466777777777663332          22 3


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--cccc-------------------
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQ-------------------  208 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~-------------------  208 (341)
                      +..++++++|++|++++|.  .....|..++.+++|+.|++++|     .+..++  .+..                   
T Consensus       140 ~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~  212 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANVSYNLLSTLAIPIA  212 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECTTS-----CCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred             HHHhccCCCCCEEEeeCCc--CCCCChhhhhcCCcCcEEECcCC-----CCCCcChhhhhhhhhhhcccCccccccCCch
Confidence            3326888889999988885  22233346788889999998887     444333  1110                   


Q ss_pred             -----------------ccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCC
Q 044597          209 -----------------FPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLW  269 (341)
Q Consensus       209 -----------------lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~  269 (341)
                                       .|++|+.|++++|.++.  ++.++.+++|+.|+++.+.  ...+...+.+++|++|++++ +.
T Consensus       213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~  289 (597)
T 3oja_B          213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NR  289 (597)
T ss_dssp             CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SC
T ss_pred             hheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CC
Confidence                             11346666666666533  3567888899999883333  22234456789999999998 46


Q ss_pred             CCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          270 LEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       270 l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +..++...+.+++|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus       290 l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          290 LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred             CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence            77888777789999999999998 77888888889999999999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=5.8e-21  Score=173.51  Aligned_cols=223  Identities=17%  Similarity=0.212  Sum_probs=105.9

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      +..+++|++|+++ +.+..++...|+++++|++|++++|.+..+|.. ++.+++|++|+++++.+.          .. +
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l-~  140 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK----------TL-G  140 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS----------SS-C
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc----------cc-C
Confidence            3444444444444 234444332224444444444444444444433 444444444444442111          11 1


Q ss_pred             h--hhhCCCCCCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCC
Q 044597          150 E--EILGRLPNLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELI  224 (341)
Q Consensus       150 ~--~~l~~l~~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~  224 (341)
                      .  . ++.+++|++|+++++.  ....+ +..++.+++|+.|++++|     .+..+ | .+..+ ++|++|++++|.+.
T Consensus       141 ~~~~-~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~l~~l-~~L~~L~l~~n~l~  211 (353)
T 2z80_A          141 ETSL-FSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDAS-----DLQSYEPKSLKSI-QNVSHLILHMKQHI  211 (353)
T ss_dssp             SSCS-CTTCTTCCEEEEEESS--SCCEECTTTTTTCCEEEEEEEEET-----TCCEECTTTTTTC-SEEEEEEEECSCST
T ss_pred             chhh-hccCCCCcEEECCCCc--cccccCHHHccCCCCCCEEECCCC-----CcCccCHHHHhcc-ccCCeecCCCCccc
Confidence            1  2 4445555555555442  11111 223444555555555554     33333 3 44444 45555555555442


Q ss_pred             CCCCccCcCCCCCCeEEEEEeC-cEee----ecCCCCCcccEEEEecCCCCC-----ceeecCCCCCcccEEEEecCCCC
Q 044597          225 DDPMPALEKLPVLQVLKLKYLG-RKLA----CSSDGFPKLKVLHLKSMLWLE-----EWTMGIKAMPKLECVIINPCAHL  294 (341)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~~~-~~~~----~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~~c~~l  294 (341)
                      ..+...++.+++|++|+++.+. ....    ......+.++.++++++. +.     .++...+.+++|+.|++++|. +
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l  289 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQ-L  289 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSC-C
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCC-C
Confidence            2221122334555555551111 0000    001123344444444421 11     123334568999999999997 8


Q ss_pred             Ccccccc-CCCCCCcEEEEecCC
Q 044597          295 KRIPEQL-WCLKSLNKLELWWPE  316 (341)
Q Consensus       295 ~~lp~~l-~~l~~L~~L~l~~~~  316 (341)
                      +.+|.++ .++++|++|++++|+
T Consensus       290 ~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          290 KSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHHHHhcCCCCCEEEeeCCC
Confidence            8999875 789999999999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=4.7e-21  Score=171.56  Aligned_cols=214  Identities=20%  Similarity=0.151  Sum_probs=173.2

Q ss_pred             CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597           73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~  151 (341)
                      ..+.+|++|+++ +.+..++...|+++++|++|++++|.+..++. +..+++|++|++++              +. +..
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~--------------n~-l~~   94 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--------------NY-VQE   94 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS--------------SE-EEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC--------------Cc-ccc
Confidence            456789999998 58888876555999999999999998887765 99999999999998              33 444


Q ss_pred             hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                       +...++|++|+++++..   ..++  ...+++|+.|++++|     .++.++  .+..+ ++|++|++++|.+......
T Consensus        95 -l~~~~~L~~L~l~~n~l---~~~~--~~~~~~L~~L~l~~N-----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           95 -LLVGPSIETLHAANNNI---SRVS--CSRGQGKKNIYLANN-----KITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             -EEECTTCCEEECCSSCC---SEEE--ECCCSSCEEEECCSS-----CCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGG
T ss_pred             -ccCCCCcCEEECCCCcc---CCcC--ccccCCCCEEECCCC-----CCCCccchhhhcc-CCCCEEECCCCCCCcccHH
Confidence             55668999999998852   2221  245789999999998     788875  77788 9999999999998665555


Q ss_pred             cC-cCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597          230 AL-EKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN  308 (341)
Q Consensus       230 ~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  308 (341)
                      .+ ..+++|++|+++.+..........+++|++|++++ +.+..++.....+++|+.|++++|. ++.+|..+..+++|+
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~  240 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE  240 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCC
T ss_pred             HHhhccCcCCEEECCCCcCcccccccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCC
Confidence            55 47899999999433322223444689999999998 4688887777789999999999997 888999899999999


Q ss_pred             EEEEecCC
Q 044597          309 KLELWWPE  316 (341)
Q Consensus       309 ~L~l~~~~  316 (341)
                      .|++++|+
T Consensus       241 ~L~l~~N~  248 (317)
T 3o53_A          241 HFDLRGNG  248 (317)
T ss_dssp             EEECTTCC
T ss_pred             EEEccCCC
Confidence            99999988

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=9.6e-21  Score=168.58  Aligned_cols=219  Identities=16%  Similarity=0.154  Sum_probs=172.7

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc---chhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT---ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l---p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~  151 (341)
                      .++++|+++ +.+..+|..+|+++++|++|++++|.+..+   |..+..+++|++|+++++.+.          .. +..
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~----------~l-~~~   96 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI----------TM-SSN   96 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE----------EE-EEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc----------cC-hhh
Confidence            578999998 588999998779999999999999977655   678889999999999983332          23 445


Q ss_pred             hhCCCCCCceEEEEeecchhhhHHH--HHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCC-C
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLLS--KSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELID-D  226 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~-~  226 (341)
                       +..+++|++|+++++.   ...++  ..+..+++|+.|++++|     .+... | .+..+ ++|++|++++|.+.. .
T Consensus        97 -~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           97 -FLGLEQLEHLDFQHSN---LKQMSEFSVFLSLRNLIYLDISHT-----HTRVAFNGIFNGL-SSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             -EETCTTCCEEECTTSE---EESSTTTTTTTTCTTCCEEECTTS-----CCEECSTTTTTTC-TTCCEEECTTCEEGGGE
T ss_pred             -cCCCCCCCEEECCCCc---ccccccchhhhhccCCCEEECCCC-----cCCccchhhcccC-cCCCEEECCCCcccccc
Confidence             8889999999999885   33333  36788999999999998     66654 4 67889 999999999999754 3


Q ss_pred             CCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCccccccCC
Q 044597          227 PMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRIPEQLWC  303 (341)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~  303 (341)
                      ....++.+++|++|+++.+. ... +.....+++|++|+++++ .+..++. ....+++|+.|++++|..-...|..+..
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            45678899999999993332 222 234567899999999984 4666553 4567899999999999854446777888


Q ss_pred             CC-CCcEEEEecCC
Q 044597          304 LK-SLNKLELWWPE  316 (341)
Q Consensus       304 l~-~L~~L~l~~~~  316 (341)
                      ++ +|++|++++|+
T Consensus       246 ~~~~L~~L~L~~N~  259 (306)
T 2z66_A          246 FPSSLAFLNLTQND  259 (306)
T ss_dssp             CCTTCCEEECTTCC
T ss_pred             hhccCCEEEccCCC
Confidence            85 99999999976

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=171.85  Aligned_cols=226  Identities=19%  Similarity=0.154  Sum_probs=168.8

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC  147 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~  147 (341)
                      ..+..+.+|++|+++ +.+..+|...|+++++|++|++++|.+..+ |..+..+++|++|+++++.+.          ..
T Consensus        74 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~----------~~  143 (477)
T 2id5_A           74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV----------YI  143 (477)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC----------EE
T ss_pred             hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc----------ee
Confidence            467788899999998 578889887779999999999999987776 557889999999999884442          12


Q ss_pred             chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCC
Q 044597          148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELID  225 (341)
Q Consensus       148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~  225 (341)
                      .+.. ++.+++|++|+++++...  ...+..+..+++|+.|+++++     .+..++  .+..+ ++|+.|++++|....
T Consensus       144 ~~~~-~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n-----~i~~~~~~~~~~l-~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          144 SHRA-FSGLNSLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHL-----NINAIRDYSFKRL-YRLKVLEISHWPYLD  214 (477)
T ss_dssp             CTTS-STTCTTCCEEEEESCCCS--SCCHHHHTTCTTCCEEEEESC-----CCCEECTTCSCSC-TTCCEEEEECCTTCC
T ss_pred             Chhh-ccCCCCCCEEECCCCcCc--ccChhHhcccCCCcEEeCCCC-----cCcEeChhhcccC-cccceeeCCCCcccc
Confidence            0334 888999999999988522  222345788999999999988     677765  67788 899999999988544


Q ss_pred             CCCccCcCCCCCCeEEEEEeCc-Eee-ecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCcc-cccc
Q 044597          226 DPMPALEKLPVLQVLKLKYLGR-KLA-CSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRI-PEQL  301 (341)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~l-p~~l  301 (341)
                      ...+......+|++|+++.+.. ..+ .....+++|++|+++++ .+..++. ....+++|+.|++.+|. +..+ |..+
T Consensus       215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  292 (477)
T 2id5_A          215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF  292 (477)
T ss_dssp             EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB
T ss_pred             ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECHHHh
Confidence            4444455556899999943332 122 13457889999999984 4666653 34578899999999988 5554 6677


Q ss_pred             CCCCCCcEEEEecCC
Q 044597          302 WCLKSLNKLELWWPE  316 (341)
Q Consensus       302 ~~l~~L~~L~l~~~~  316 (341)
                      .++++|++|++++|.
T Consensus       293 ~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          293 RGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCcccCCEEECCCCc
Confidence            889999999999885

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=6.2e-20  Score=172.28  Aligned_cols=218  Identities=18%  Similarity=0.185  Sum_probs=174.5

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      .++++|+++ +++..++...|+++++|++|+|++|.+..++ ..+.++++|++|+++++.+.          .. ++..+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----------~~-~~~~~  143 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT----------VI-PSGAF  143 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS----------BC-CTTTS
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC----------cc-Chhhh
Confidence            578999998 6888886655599999999999999988886 67899999999999984443          22 22228


Q ss_pred             CCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCcc
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      +.+++|++|++++|.   ...++ ..+..+++|+.|+++++.    .++.++  .+..+ ++|++|++++|.++.  ++.
T Consensus       144 ~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~~~----~l~~i~~~~~~~l-~~L~~L~L~~n~l~~--~~~  213 (452)
T 3zyi_A          144 EYLSKLRELWLRNNP---IESIPSYAFNRVPSLMRLDLGELK----KLEYISEGAFEGL-FNLKYLNLGMCNIKD--MPN  213 (452)
T ss_dssp             SSCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECCCCT----TCCEECTTTTTTC-TTCCEEECTTSCCSS--CCC
T ss_pred             cccCCCCEEECCCCC---cceeCHhHHhcCCcccEEeCCCCC----CccccChhhccCC-CCCCEEECCCCcccc--ccc
Confidence            899999999999985   33333 357899999999999866    788887  67889 999999999999743  467


Q ss_pred             CcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecCCCCCccccc-cCCCCC
Q 044597          231 LEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKS  306 (341)
Q Consensus       231 l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~  306 (341)
                      +..+++|++|+++.+. ... +.....+++|++|+++++ .+..+. .....+++|+.|++++|. +..+|.. +..+++
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  291 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRY  291 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTT
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccC
Confidence            8999999999993322 222 344668999999999984 466654 345678999999999997 7787754 577999


Q ss_pred             CcEEEEecCC
Q 044597          307 LNKLELWWPE  316 (341)
Q Consensus       307 L~~L~l~~~~  316 (341)
                      |+.|++++||
T Consensus       292 L~~L~L~~Np  301 (452)
T 3zyi_A          292 LVELHLHHNP  301 (452)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEccCCC
Confidence            9999999977

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=4e-20  Score=180.69  Aligned_cols=118  Identities=11%  Similarity=0.142  Sum_probs=73.4

Q ss_pred             ccccCCcceeeeeccCC-C-Cc--ccChhhhhcC------CCccEEecCCccccccch--hhcccccCceeeecC---c-
Q 044597           69 SPIMDQEVRLRENSIIP-S-LK--SLPSSFLSSL------LNLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGA---I-  132 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~~-~-~~--~lp~~if~~L------~~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~---~-  132 (341)
                      +..+.++++|++|+++. . +.  .+|..+ +++      ++|++|++++|.+..+|.  .++++++|++|++++   . 
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG  344 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc
Confidence            35667777888888873 3 65  477777 665      778888888887777777  777777888887777   2 


Q ss_pred             CCCCCC------ceEEeCC----CcchhhhhCCCCC-CceEEEEeecchhhhHHHHHhcCCC--CCCEEEEEeC
Q 044597          133 TLPAHP------GKYSLHP----CCSTEEILGRLPN-LQNLRIWGDLSYYQSLLSKSLCRLS--CLESLKLANE  193 (341)
Q Consensus       133 ~lp~~i------~~~~~~~----~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~l~--~L~~L~l~~~  193 (341)
                      .+| .+      +.+.+++    .. +.. ++.+++ |++|+++++.   ...+|..+..++  +|+.|++++|
T Consensus       345 ~ip-~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~~L~~L~Ls~N~---l~~lp~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          345 KLP-AFGSEIKLASLNLAYNQITEI-PAN-FCGFTEQVENLSFAHNK---LKYIPNIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             ECC-CCEEEEEESEEECCSSEEEEC-CTT-SEEECTTCCEEECCSSC---CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred             chh-hhCCCCCCCEEECCCCccccc-cHh-hhhhcccCcEEEccCCc---CcccchhhhhcccCccCEEECcCC
Confidence            555 44      4444443    22 333 566666 7777766663   224444444333  5555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=170.00  Aligned_cols=218  Identities=17%  Similarity=0.181  Sum_probs=174.1

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      ..++.|+++ +.+..++...|+++++|++|+|++|.+..++ ..+..+++|++|+++++.+.          .. ++..+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~----------~~-~~~~~  132 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT----------TI-PNGAF  132 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS----------SC-CTTTS
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC----------ee-CHhHh
Confidence            578889998 6888888666699999999999999988886 57899999999999984443          22 22228


Q ss_pred             CCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCcc
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      ..+++|++|+++++.   ...++ ..+..+++|+.|+++++.    .++.++  .+..+ ++|++|++++|.++  .++.
T Consensus       133 ~~l~~L~~L~L~~N~---i~~~~~~~~~~l~~L~~L~l~~~~----~l~~i~~~~~~~l-~~L~~L~L~~n~l~--~~~~  202 (440)
T 3zyj_A          133 VYLSKLKELWLRNNP---IESIPSYAFNRIPSLRRLDLGELK----RLSYISEGAFEGL-SNLRYLNLAMCNLR--EIPN  202 (440)
T ss_dssp             CSCSSCCEEECCSCC---CCEECTTTTTTCTTCCEEECCCCT----TCCEECTTTTTTC-SSCCEEECTTSCCS--SCCC
T ss_pred             hccccCceeeCCCCc---ccccCHHHhhhCcccCEeCCCCCC----CcceeCcchhhcc-cccCeecCCCCcCc--cccc
Confidence            899999999999985   33333 357899999999999865    777777  67889 99999999999974  4557


Q ss_pred             CcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCccccc-cCCCCC
Q 044597          231 LEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRIPEQ-LWCLKS  306 (341)
Q Consensus       231 l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~  306 (341)
                      +..+++|++|+++.+. ... ......+++|++|++.+ +.+..++. ....+++|+.|++++|. +..+|.. +..+++
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHH  280 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTT
T ss_pred             cCCCcccCEEECCCCccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccC
Confidence            8999999999993332 222 33456789999999998 45666653 35578999999999997 7777754 577999


Q ss_pred             CcEEEEecCC
Q 044597          307 LNKLELWWPE  316 (341)
Q Consensus       307 L~~L~l~~~~  316 (341)
                      |+.|++++||
T Consensus       281 L~~L~L~~Np  290 (440)
T 3zyj_A          281 LERIHLHHNP  290 (440)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEcCCCC
Confidence            9999999977

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=2e-20  Score=177.03  Aligned_cols=214  Identities=19%  Similarity=0.142  Sum_probs=173.6

Q ss_pred             CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597           73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~  151 (341)
                      ..+.+|++|+++ +.+..+|...|+++++|++|+|++|.+...+. ++.+++|++|++++              +. +..
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~--------------N~-l~~   94 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--------------NY-VQE   94 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS--------------SE-EEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC--------------Cc-CCC
Confidence            345689999998 58888875545999999999999998887665 99999999999998              33 444


Q ss_pred             hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCCCCc
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                       +...++|++|++++|...   .++  ...+++|+.|++++|     .+..+ | .++.+ ++|+.|++++|.++...+.
T Consensus        95 -l~~~~~L~~L~L~~N~l~---~~~--~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~  162 (487)
T 3oja_A           95 -LLVGPSIETLHAANNNIS---RVS--CSRGQGKKNIYLANN-----KITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFA  162 (487)
T ss_dssp             -EEECTTCCEEECCSSCCC---CEE--ECCCSSCEEEECCSS-----CCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGG
T ss_pred             -CCCCCCcCEEECcCCcCC---CCC--ccccCCCCEEECCCC-----CCCCCCchhhcCC-CCCCEEECCCCCCCCcChH
Confidence             555689999999998632   221  235789999999998     77776 4 77889 9999999999998766666


Q ss_pred             cCc-CCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597          230 ALE-KLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN  308 (341)
Q Consensus       230 ~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  308 (341)
                      .+. .+++|++|+++.+..........+++|++|++++ +.+..++...+.+++|+.|++++|. +..+|..+..+++|+
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~  240 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE  240 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCC
T ss_pred             HHhhhCCcccEEecCCCccccccccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCC
Confidence            665 7999999999433322334445699999999998 4688888778889999999999998 888999999999999


Q ss_pred             EEEEecCC
Q 044597          309 KLELWWPE  316 (341)
Q Consensus       309 ~L~l~~~~  316 (341)
                      .|++++|+
T Consensus       241 ~L~l~~N~  248 (487)
T 3oja_A          241 HFDLRGNG  248 (487)
T ss_dssp             EEECTTCC
T ss_pred             EEEcCCCC
Confidence            99999988

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=1.9e-19  Score=158.52  Aligned_cols=213  Identities=17%  Similarity=0.131  Sum_probs=143.8

Q ss_pred             eeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      .++.+ ..+..+|..+   .++|++|++++|.+..+|. .+..+++|++|+++++.+.          ...+.. ++.++
T Consensus        15 ~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~----------~~~~~~-~~~l~   80 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA----------RIDAAA-FTGLA   80 (285)
T ss_dssp             EEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----------EECTTT-TTTCT
T ss_pred             EEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc----------eeCHhh-cCCcc
Confidence            44444 3666777544   4577777777777777653 4677777777777763332          110233 77777


Q ss_pred             CCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597          158 NLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL  234 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l  234 (341)
                      +|++|+++++.  ....+ +..+..+++|+.|+++++     .+..++  .+..+ ++|++|++++|.++..+...++.+
T Consensus        81 ~L~~L~l~~n~--~l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l  152 (285)
T 1ozn_A           81 LLEQLDLSDNA--QLRSVDPATFHGLGRLHTLHLDRC-----GLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDL  152 (285)
T ss_dssp             TCCEEECCSCT--TCCCCCTTTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEeCCCCC--CccccCHHHhcCCcCCCEEECCCC-----cCCEECHhHhhCC-cCCCEEECCCCcccccCHhHhccC
Confidence            77777777763  13333 345677788888888777     666664  56777 788888888888765555567778


Q ss_pred             CCCCeEEEEEeC-cEeee-cCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCcccc-ccCCCCCCcEE
Q 044597          235 PVLQVLKLKYLG-RKLAC-SSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNKL  310 (341)
Q Consensus       235 ~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L  310 (341)
                      ++|++|+++.+. ..... ....+++|++|+++++. +..+ +...+.+++|+.|++++|. +..+|. .+..+++|++|
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYL  230 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEE
Confidence            888888883332 22222 24567888888888743 5555 4455678899999999997 666664 47889999999


Q ss_pred             EEecCC
Q 044597          311 ELWWPE  316 (341)
Q Consensus       311 ~l~~~~  316 (341)
                      ++++|+
T Consensus       231 ~l~~N~  236 (285)
T 1ozn_A          231 RLNDNP  236 (285)
T ss_dssp             ECCSSC
T ss_pred             eccCCC
Confidence            999876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=1.8e-20  Score=183.14  Aligned_cols=182  Identities=14%  Similarity=0.074  Sum_probs=113.9

Q ss_pred             ccChhhhhcCCCccEEecCCccccc------------------cchhhc--ccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           89 SLPSSFLSSLLNLYTLEMPFSYIDH------------------TADEFW--KMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        89 ~lp~~if~~L~~L~~L~Ls~~~~~~------------------lp~~i~--~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      .+|..+ +++++|++|+|++|.+..                  +|.+++  ++++|++|+++++.+..         .. 
T Consensus       197 ~ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~---------~~-  265 (636)
T 4eco_A          197 FVSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT---------KL-  265 (636)
T ss_dssp             EECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS---------SC-
T ss_pred             cCCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc---------cC-
Confidence            488888 999999999999998888                  999999  99999999999843321         33 


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhh--HHHHHhcCC------CCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEE
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQS--LLSKSLCRL------SCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLS  217 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~l~~l------~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~  217 (341)
                      |.. ++++++|++|++++|.  ...  .+|..++.+      ++|+.|++++|     .++.+|   .++.+ ++|++|+
T Consensus       266 p~~-l~~l~~L~~L~Ls~n~--~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-----~l~~ip~~~~l~~l-~~L~~L~  336 (636)
T 4eco_A          266 PTF-LKALPEMQLINVACNR--GISGEQLKDDWQALADAPVGEKIQIIYIGYN-----NLKTFPVETSLQKM-KKLGMLE  336 (636)
T ss_dssp             CTT-TTTCSSCCEEECTTCT--TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-----CCSSCCCHHHHTTC-TTCCEEE
T ss_pred             hHH-HhcCCCCCEEECcCCC--CCccccchHHHHhhhccccCCCCCEEECCCC-----cCCccCchhhhccC-CCCCEEe
Confidence            444 7777777777777663  122  466666554      77777777776     566666   25666 6777777


Q ss_pred             EEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCc-ccEEEEecCCCCCceeecCCC--CCcccEEEEecCC
Q 044597          218 FSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPK-LKVLHLKSMLWLEEWTMGIKA--MPKLECVIINPCA  292 (341)
Q Consensus       218 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~--l~~L~~L~l~~c~  292 (341)
                      +++|.+.+... .++.+++|++|+++.+. ..++.....+++ |++|+++++. +..+|...+.  +++|+.|++++|.
T Consensus       337 L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             CCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCc
Confidence            77776542222 66666666666662211 122222334555 6666666532 3344433222  2245555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=8.6e-20  Score=164.35  Aligned_cols=229  Identities=17%  Similarity=0.206  Sum_probs=167.9

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC---cCCCCCC----ceEEeCC-
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA---ITLPAHP----GKYSLHP-  145 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~---~~lp~~i----~~~~~~~-  145 (341)
                      .++++|+++ +.+..+|...|+++++|++|++++|.+..+ |..++.+++|++|++++   ..+|..+    +.+.+++ 
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n  133 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN  133 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            567888887 577777654448888888888888877776 66788888888888887   3444333    5566554 


Q ss_pred             ---CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEee
Q 044597          146 ---CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNI  221 (341)
Q Consensus       146 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~  221 (341)
                         .. ++..++.+++|++|+++++........+..+..+ +|+.|+++++     .++.+| .+   +++|++|++++|
T Consensus       134 ~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-----~l~~l~~~~---~~~L~~L~l~~n  203 (332)
T 2ft3_A          134 RIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-----KLTGIPKDL---PETLNELHLDHN  203 (332)
T ss_dssp             CCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-----BCSSCCSSS---CSSCSCCBCCSS
T ss_pred             ccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-----CCCccCccc---cCCCCEEECCCC
Confidence               23 2323788999999999988633333445556666 8999999888     778887 43   278999999999


Q ss_pred             cCCCCCCccCcCCCCCCeEEEEEeCc-Eee-ecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccc
Q 044597          222 ELIDDPMPALEKLPVLQVLKLKYLGR-KLA-CSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPE  299 (341)
Q Consensus       222 ~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~  299 (341)
                      .++......+..+++|++|+++.+.. ... .....+++|++|+++++ .+..++...+.+++|+.|++++|+ ++.+|.
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~  281 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGV  281 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccCh
Confidence            98777777899999999999943322 111 13456889999999984 577888777889999999999998 777664


Q ss_pred             c-cCC------CCCCcEEEEecCC
Q 044597          300 Q-LWC------LKSLNKLELWWPE  316 (341)
Q Consensus       300 ~-l~~------l~~L~~L~l~~~~  316 (341)
                      . +..      .++|+.|++.+||
T Consensus       282 ~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          282 NDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             TSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             hHccccccccccccccceEeecCc
Confidence            2 222      4678999999998

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=1.9e-20  Score=186.92  Aligned_cols=235  Identities=19%  Similarity=0.140  Sum_probs=185.7

Q ss_pred             ccCC-cceeeeeccC-CCCc-ccChhhhhcCCCccEEecCCcccc-ccchh-hcccccCceeeecC----cCCCCCC---
Q 044597           71 IMDQ-EVRLRENSII-PSLK-SLPSSFLSSLLNLYTLEMPFSYID-HTADE-FWKMSKLRYLNFGA----ITLPAHP---  138 (341)
Q Consensus        71 ~~~~-l~~Lr~L~l~-~~~~-~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~-i~~L~~L~~L~l~~----~~lp~~i---  138 (341)
                      .+.. +.+|++|+++ +.+. .+|..+ +++++|++|++++|.+. .+|.. ++++++|++|++++    ..+|..+   
T Consensus       288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  366 (768)
T 3rgz_A          288 FLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL  366 (768)
T ss_dssp             CSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred             HHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence            3434 4888999997 4555 567777 99999999999999776 78876 88899999999988    2555533   


Q ss_pred             ----ceEEeCC-----CcchhhhhCC--CCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCc-cCc-c
Q 044597          139 ----GKYSLHP-----CCSTEEILGR--LPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSN-TIL-A  205 (341)
Q Consensus       139 ----~~~~~~~-----~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~-~lp-~  205 (341)
                          +.+.+++     .. ++. +..  +++|++|++.+|.  ....+|..++.+++|+.|++++|     .+. .+| .
T Consensus       367 ~~~L~~L~Ls~N~l~~~~-~~~-~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~~~p~~  437 (768)
T 3rgz_A          367 SASLLTLDLSSNNFSGPI-LPN-LCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSS  437 (768)
T ss_dssp             TTTCSEEECCSSEEEEEC-CTT-TTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCSS-----EEESCCCGG
T ss_pred             hcCCcEEEccCCCcCCCc-Chh-hhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEECcCC-----cccCcccHH
Confidence                5555554     22 344 554  7889999999886  33467778999999999999998     565 567 8


Q ss_pred             cccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcc
Q 044597          206 EYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKL  283 (341)
Q Consensus       206 ~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L  283 (341)
                      +..+ ++|+.|++++|.+....+..++.+++|++|+++.+.  ...+.....+++|++|+++++.-...+|...+.+++|
T Consensus       438 l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          438 LGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            8899 999999999999877777789999999999993332  2334455678999999999976555777778889999


Q ss_pred             cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          284 ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       284 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +.|++++|...+.+|..+.++++|++|++++|+
T Consensus       517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            999999999666799999999999999999876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=1.6e-19  Score=180.62  Aligned_cols=231  Identities=16%  Similarity=0.231  Sum_probs=144.0

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhccccc-CceeeecC---cCCCCCC-------
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSK-LRYLNFGA---ITLPAHP-------  138 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~-L~~L~l~~---~~lp~~i-------  138 (341)
                      .+..+++|+.|+++ +.+..+| .+ +++++|++|++++|.+..+|..+..+++ |++|++++   ..+|..+       
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~  645 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV  645 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSC
T ss_pred             hhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCC
Confidence            35555566666665 3555555 44 6666666666666655566666666666 66666665   3334322       


Q ss_pred             -ceEEeCCCcch----hh---hhC--CCCCCceEEEEeecchhhhHHHHHh-cCCCCCCEEEEEeCCCCCCCCccCc-cc
Q 044597          139 -GKYSLHPCCST----EE---ILG--RLPNLQNLRIWGDLSYYQSLLSKSL-CRLSCLESLKLANESKMPRRSNTIL-AE  206 (341)
Q Consensus       139 -~~~~~~~~~~~----~~---~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~e~~~~l~~lp-~~  206 (341)
                       +.+.++++. +    +.   .++  .+++|+.|++++|.   ...+|..+ ..+++|+.|++++|     .+..+| ++
T Consensus       646 L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~N-----~L~~ip~~~  716 (876)
T 4ecn_A          646 MGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNE---IQKFPTELFATGSPISTIILSNN-----LMTSIPENS  716 (876)
T ss_dssp             EEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSC---CCSCCHHHHHTTCCCSEEECCSC-----CCSCCCTTS
T ss_pred             CCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCc---CCccCHHHHccCCCCCEEECCCC-----cCCccChHH
Confidence             334444322 1    11   011  23467777777764   33455554 47788888888887     777777 44


Q ss_pred             cccc-------CCccEEEEEeecCCCCCCccCc--CCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEec------CCCC
Q 044597          207 YQFP-------PSLTHLSFSNIELIDDPMPALE--KLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKS------MLWL  270 (341)
Q Consensus       207 ~~lp-------~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~------~~~l  270 (341)
                      ...+       ++|+.|++++|.++ ..+..+.  .+++|+.|+++.+. ..++.....+++|+.|++++      +.-.
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccc
Confidence            3320       27888888888875 3334454  78888888883322 22444455788888888875      2223


Q ss_pred             CceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          271 EEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       271 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      ..+|...+.+++|+.|++++|. ++.+|..+.  ++|+.|++++|+
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCT
T ss_pred             ccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCC
Confidence            4556566678888888888888 588887654  688889988887

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.80  E-value=2.7e-19  Score=167.86  Aligned_cols=126  Identities=21%  Similarity=0.214  Sum_probs=99.2

Q ss_pred             CCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCc
Q 044597          183 SCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPK  258 (341)
Q Consensus       183 ~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~  258 (341)
                      ++|+.|+++++     .+... | ++..+ ++|++|++++|.+.......++.+++|++|+++.+. ... +.....+++
T Consensus       275 ~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          275 SGVKTCDLSKS-----KIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             SCCCEEECCSS-----CCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cCceEEEecCc-----cccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence            57788888777     55554 5 78889 999999999999876667789999999999993332 222 234567999


Q ss_pred             ccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcEEEEecCC
Q 044597          259 LKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNKLELWWPE  316 (341)
Q Consensus       259 L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  316 (341)
                      |++|+++++ .+..+ +...+.+++|++|++.+|. ++.+|.. +..+++|++|++++|+
T Consensus       349 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          349 LEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence            999999985 46666 4556789999999999998 7777764 4789999999999866

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=2e-19  Score=174.80  Aligned_cols=233  Identities=21%  Similarity=0.136  Sum_probs=127.9

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCc----CCCCCC-------
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAI----TLPAHP-------  138 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~----~lp~~i-------  138 (341)
                      +..+++|++|+++ +.+..+|..+ +++++|++|++++|.+..+ |..+..+++|++|+++++    .+|.+.       
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccCCCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            5667777777776 4677777777 7777777777777766665 446777777777777762    233321       


Q ss_pred             ceEEeCCCc----c--hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c--ccccc
Q 044597          139 GKYSLHPCC----S--TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L--AEYQF  209 (341)
Q Consensus       139 ~~~~~~~~~----~--~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p--~~~~l  209 (341)
                      +.+.++++.    .  +.. ++.+++|++|+++++.  .....+..+..+++|+.|++++|     .+... |  ++..+
T Consensus       353 ~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l  424 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFT-----RLKVKDAQSPFQNL  424 (606)
T ss_dssp             CEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTC-----CEECCTTCCTTTTC
T ss_pred             CEEECCCCccccccCcchh-cccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCC-----cCCCcccchhhhCc
Confidence            334443311    0  112 4555555555555553  11222334555555666665555     33332 2  34555


Q ss_pred             cCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC---cEee--ecCCCCCcccEEEEecCCCCCce-eecCCCCCcc
Q 044597          210 PPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG---RKLA--CSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKL  283 (341)
Q Consensus       210 p~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~~~--~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L  283 (341)
                       ++|+.|++++|.+.......++.+++|++|+++.+.   ....  .....+++|++|+++++. +..+ +...+.+++|
T Consensus       425 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          425 -HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMM  502 (606)
T ss_dssp             -TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred             -ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCC
Confidence             666666666666544444556666666666661111   1111  123345666666666642 3333 2334556666


Q ss_pred             cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          284 ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       284 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +.|++++|..-...|..+.++++| +|++++|.
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            666666665333345556666666 66666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=1e-18  Score=164.57  Aligned_cols=100  Identities=24%  Similarity=0.291  Sum_probs=55.5

Q ss_pred             CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEec
Q 044597          211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINP  290 (341)
Q Consensus       211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  290 (341)
                      ++|+.|++++|.+..  ++.+..+++|+.|+++.+..........+++|++|+++++ .+..++. .+.+++|+.|++.+
T Consensus       221 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNE  296 (466)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCccc--chhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCC
Confidence            455555555554422  2345555566666552222111112445666666666663 3444332 44577777777777


Q ss_pred             CCCCCccccccCCCCCCcEEEEecCC
Q 044597          291 CAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       291 c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      |. +..++. +..+++|+.|++++|.
T Consensus       297 n~-l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          297 NQ-LEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             SC-CSCCGG-GGGCTTCSEEECCSSC
T ss_pred             Cc-ccCchh-hcCCCCCCEEECcCCc
Confidence            76 555554 5667778888887775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=3.5e-19  Score=161.23  Aligned_cols=228  Identities=18%  Similarity=0.163  Sum_probs=143.8

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCC---------Cce
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAH---------PGK  140 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~---------i~~  140 (341)
                      .+..+++|++|+++ +.+..+| .+ +++++|++|++++|.+..+|. +..+++|++|+++++.....         ++.
T Consensus        83 ~~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           83 PLSNLVKLTNLYIGTNKITDIS-AL-QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCG-GG-TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhhcCCcCCEEEccCCcccCch-HH-cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            37888999999998 5777776 46 999999999999999888876 88999999999988322111         133


Q ss_pred             EEeCCCc--chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEE
Q 044597          141 YSLHPCC--STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSF  218 (341)
Q Consensus       141 ~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l  218 (341)
                      +.+.+..  .... ++.+++|++|+++++...   .++. +..+++|+.|+++++     .+..++.+..+ ++|++|++
T Consensus       160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~---~~~~-~~~l~~L~~L~l~~n-----~l~~~~~~~~~-~~L~~L~l  228 (347)
T 4fmz_A          160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQIE---DISP-LASLTSLHYFTAYVN-----QITDITPVANM-TRLNSLKI  228 (347)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCSEEECTTSCCC---CCGG-GGGCTTCCEEECCSS-----CCCCCGGGGGC-TTCCEEEC
T ss_pred             EEecCCCcCCchh-hccCCCCCEEEccCCccc---cccc-ccCCCccceeecccC-----CCCCCchhhcC-CcCCEEEc
Confidence            3433311  0222 445555555555555311   1211 445555666665555     44444434456 67777777


Q ss_pred             EeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccc
Q 044597          219 SNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIP  298 (341)
Q Consensus       219 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp  298 (341)
                      ++|.++..  +.+..+++|++|+++.+..........+++|++|+++++ .+..++ ....+++|+.|++++|..-...|
T Consensus       229 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          229 GNNKITDL--SPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred             cCCccCCC--cchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence            77776332  236777777777773332222233456777888887774 455543 24467778888888877333345


Q ss_pred             cccCCCCCCcEEEEecCC
Q 044597          299 EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       299 ~~l~~l~~L~~L~l~~~~  316 (341)
                      ..+.++++|++|++++|+
T Consensus       305 ~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             HHHHTCTTCSEEECCSSS
T ss_pred             hHhhccccCCEEEccCCc
Confidence            556777788888888776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=3.9e-19  Score=177.83  Aligned_cols=239  Identities=13%  Similarity=0.132  Sum_probs=135.5

Q ss_pred             ccccCCcceeeeeccCC-C-Cc--ccChhhhhcCC-------CccEEecCCccccccch--hhcccccCceeeecC---c
Q 044597           69 SPIMDQEVRLRENSIIP-S-LK--SLPSSFLSSLL-------NLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGA---I  132 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~~-~-~~--~lp~~if~~L~-------~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~---~  132 (341)
                      ++.+.++++|++|+++. . +.  .+|..+ ++++       +|++|++++|.+..+|.  .++++++|++|++++   .
T Consensus       508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          508 PDFLYDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             CGGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             hHHHhCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence            35677788888888873 4 65  477766 6655       88888888887778887  788888888888887   3


Q ss_pred             CCCCCC------ceEEeCC----CcchhhhhCCCCC-CceEEEEeecchhhhHHHHHhcCCCC--CCEEEEEeCCC---C
Q 044597          133 TLPAHP------GKYSLHP----CCSTEEILGRLPN-LQNLRIWGDLSYYQSLLSKSLCRLSC--LESLKLANESK---M  196 (341)
Q Consensus       133 ~lp~~i------~~~~~~~----~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~l~~--L~~L~l~~~~e---~  196 (341)
                      .+| .+      +.+.+++    .. +.. +..+++ |++|++++|.   ...+|..+..++.  |+.|++++|.-   +
T Consensus       587 ~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~-l~~l~~~L~~L~Ls~N~---L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          587 HLE-AFGTNVKLTDLKLDYNQIEEI-PED-FCAFTDQVEGLGFSHNK---LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             BCC-CCCTTSEESEEECCSSCCSCC-CTT-SCEECTTCCEEECCSSC---CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             cch-hhcCCCcceEEECcCCccccc-hHH-HhhccccCCEEECcCCC---CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence            444 33      4555554    23 334 677777 8888888774   2244544444432  55555555410   0


Q ss_pred             C---C------------------CCccCc-cc-ccccCCccEEEEEeecCCCCCCccCc-------CCCCCCeEEEEEeC
Q 044597          197 P---R------------------RSNTIL-AE-YQFPPSLTHLSFSNIELIDDPMPALE-------KLPVLQVLKLKYLG  246 (341)
Q Consensus       197 ~---~------------------~l~~lp-~~-~~lp~~L~~L~l~~~~l~~~~~~~l~-------~l~~L~~L~l~~~~  246 (341)
                      +   .                  .+..+| ++ ..+ ++|+.|++++|.+...+...+.       ++++|+.|+++.+.
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~  739 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK  739 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred             ccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence            0   0                  444444 22 244 5566666666555422222222       12256666662211


Q ss_pred             -cEeeecCC--CCCcccEEEEecCCCCCceeecCCCCCcccEEEEec------CCCCCccccccCCCCCCcEEEEecCC
Q 044597          247 -RKLACSSD--GFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINP------CAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       247 -~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                       ..++....  .+++|+.|+++++ .+..+|...+.+++|+.|++++      |...+.+|..+.++++|+.|++++|.
T Consensus       740 L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          740 LTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             CCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             CccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence             12222222  4566666666653 3444555555666666666654      33334456566666666666666665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.79  E-value=3.4e-19  Score=167.14  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=74.5

Q ss_pred             CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEE
Q 044597          211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVI  287 (341)
Q Consensus       211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~  287 (341)
                      ++|+.|++++|.+.......++.+++|++|+++.+. ... +.....+++|++|+++++ .+..++ ...+.+++|++|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEE
Confidence            356666666666655555567888889998883222 222 224557889999999985 456653 4456789999999


Q ss_pred             EecCCCCCcc-ccccCCCCCCcEEEEecCC
Q 044597          288 INPCAHLKRI-PEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       288 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~  316 (341)
                      +++|. +..+ |..+..+++|++|++++|.
T Consensus       354 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          354 LSYNH-IRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             CCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCc-ccccChhhccccccccEEECCCCc
Confidence            99998 5554 6778889999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=6.2e-19  Score=159.56  Aligned_cols=231  Identities=16%  Similarity=0.187  Sum_probs=174.9

Q ss_pred             ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCC--------CCCc
Q 044597           69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLP--------AHPG  139 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp--------~~i~  139 (341)
                      .+.+..+.+|++|+++ +.+..+|. + ..+++|++|++++|.....+..+..+++|++|+++++.+.        +.++
T Consensus       103 ~~~~~~l~~L~~L~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~  180 (347)
T 4fmz_A          103 ISALQNLTNLRELYLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLY  180 (347)
T ss_dssp             CGGGTTCTTCSEEECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             chHHcCCCcCCEEECcCCcccCchh-h-ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence            3567888999999998 57888876 5 8999999999999943333445888888999988883222        1226


Q ss_pred             eEEeCCCc--chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEE
Q 044597          140 KYSLHPCC--STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLS  217 (341)
Q Consensus       140 ~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~  217 (341)
                      .+.++++.  ..+. +..+++|+.|++.++......   . +..+++|+.|++++|     .+..++.+..+ ++|++|+
T Consensus       181 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~---~-~~~~~~L~~L~l~~n-----~l~~~~~~~~l-~~L~~L~  249 (347)
T 4fmz_A          181 SLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT---P-VANMTRLNSLKIGNN-----KITDLSPLANL-SQLTWLE  249 (347)
T ss_dssp             EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG---G-GGGCTTCCEEECCSS-----CCCCCGGGTTC-TTCCEEE
T ss_pred             EEEccCCccccccc-ccCCCccceeecccCCCCCCc---h-hhcCCcCCEEEccCC-----ccCCCcchhcC-CCCCEEE
Confidence            66666522  1444 778999999999998633222   2 788999999999998     78887766778 9999999


Q ss_pred             EEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcc
Q 044597          218 FSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRI  297 (341)
Q Consensus       218 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l  297 (341)
                      +++|.++.  ++.+..+++|++|+++.+..........+++|++|+++++.-....+...+.+++|+.|++++|+ +..+
T Consensus       250 l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          250 IGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI  326 (347)
T ss_dssp             CCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred             CCCCccCC--ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence            99999744  46789999999999943332222345678999999999975333333445679999999999999 7777


Q ss_pred             ccccCCCCCCcEEEEecCC
Q 044597          298 PEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       298 p~~l~~l~~L~~L~l~~~~  316 (341)
                      +. +..+++|++|++++|+
T Consensus       327 ~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          327 RP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             GG-GGGCTTCSEESSSCC-
T ss_pred             cC-hhhhhccceeehhhhc
Confidence            65 7889999999999997

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=1.5e-18  Score=163.49  Aligned_cols=228  Identities=18%  Similarity=0.191  Sum_probs=117.2

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCc---CCCC-----CCceEE
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI---TLPA-----HPGKYS  142 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~---~lp~-----~i~~~~  142 (341)
                      +..+.+|++|+++ +.+..+|. + +++++|++|++++|.+..+|. +.++++|++|+++++   .+|.     .++.+.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  162 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLS  162 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred             hhccccCCEEECCCCccccChh-h-cCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEee
Confidence            6677777777776 46666665 5 777777777777777777764 777777777777761   1111     002222


Q ss_pred             eCC--CcchhhhhCCCCCCceEEEEeecchhh-------------------hHHHHHhcCCCCCCEEEEEeCCCCCCCCc
Q 044597          143 LHP--CCSTEEILGRLPNLQNLRIWGDLSYYQ-------------------SLLSKSLCRLSCLESLKLANESKMPRRSN  201 (341)
Q Consensus       143 ~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~-------------------~~l~~~l~~l~~L~~L~l~~~~e~~~~l~  201 (341)
                      +++  .. ... ++++++|++|+++++.....                   ..++ .++.+++|+.|++++|     .+.
T Consensus       163 l~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-----~l~  234 (466)
T 1o6v_A          163 FGNQVTD-LKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGN-----QLK  234 (466)
T ss_dssp             EEESCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSS-----CCC
T ss_pred             cCCcccC-chh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc-cccccCCCCEEECCCC-----Ccc
Confidence            211  11 122 34444444444444321111                   1111 1344555555555554     444


Q ss_pred             cCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCC-------------
Q 044597          202 TILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSML-------------  268 (341)
Q Consensus       202 ~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-------------  268 (341)
                      .++.+..+ ++|+.|++++|.+...  ..++.+++|++|+++.+..........+++|++|+++++.             
T Consensus       235 ~~~~l~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L  311 (466)
T 1o6v_A          235 DIGTLASL-TNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL  311 (466)
T ss_dssp             CCGGGGGC-TTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred             cchhhhcC-CCCCEEECCCCccccc--hhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCC
Confidence            44544556 6777777777765332  2356666666666622221111113344555555554421             


Q ss_pred             --------CCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          269 --------WLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       269 --------~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                              .+..++. .+.+++|+.|++.+|. +..++ .+.++++|+.|++++|.
T Consensus       312 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             SEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred             CEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence                    1222221 2345566666666664 44443 45566666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.77  E-value=1.8e-18  Score=162.34  Aligned_cols=215  Identities=15%  Similarity=0.089  Sum_probs=107.3

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCC-------CCceEE
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPA-------HPGKYS  142 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~-------~i~~~~  142 (341)
                      .+.++.+|++|+++ +.+..+| .+ +++++|++|++++|.+..+|  ++.+++|++|+++++.+..       .++.+.
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~-~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~  112 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT-GI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN  112 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT-TG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred             ChhHcCCCCEEEccCCCcccCh-hh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEE
Confidence            44556666666665 3555555 45 66666666666666666654  6666666666666632221       001111


Q ss_pred             eCCCcchh--hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEe
Q 044597          143 LHPCCSTE--EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSN  220 (341)
Q Consensus       143 ~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~  220 (341)
                      ++++. +.  . ++.+++|++|+++++..   ..+  .++.+++|+.|++++|.    .++.++ +..+ ++|+.|++++
T Consensus       113 L~~N~-l~~l~-~~~l~~L~~L~l~~N~l---~~l--~l~~l~~L~~L~l~~n~----~~~~~~-~~~l-~~L~~L~ls~  179 (457)
T 3bz5_A          113 CDTNK-LTKLD-VSQNPLLTYLNCARNTL---TEI--DVSHNTQLTELDCHLNK----KITKLD-VTPQ-TQLTTLDCSF  179 (457)
T ss_dssp             CCSSC-CSCCC-CTTCTTCCEEECTTSCC---SCC--CCTTCTTCCEEECTTCS----CCCCCC-CTTC-TTCCEEECCS
T ss_pred             CCCCc-CCeec-CCCCCcCCEEECCCCcc---cee--ccccCCcCCEEECCCCC----cccccc-cccC-CcCCEEECCC
Confidence            11110 00  1 44455555555554431   111  24455555555555442    233332 3345 5666666666


Q ss_pred             ecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc
Q 044597          221 IELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ  300 (341)
Q Consensus       221 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~  300 (341)
                      |.++..+   ++.+++|+.|+++.+.... ...+.+++|++|+++++ .+..++  .+.+++|+.|++++|. ++.+|  
T Consensus       180 n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~--  249 (457)
T 3bz5_A          180 NKITELD---VSQNKLLNRLNCDTNNITK-LDLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD--  249 (457)
T ss_dssp             SCCCCCC---CTTCTTCCEEECCSSCCSC-CCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--
T ss_pred             Cccceec---cccCCCCCEEECcCCcCCe-eccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC--
Confidence            6654322   5556666666662221111 12445666666666663 355554  4456666777666665 55554  


Q ss_pred             cCCCCCCcEEEE
Q 044597          301 LWCLKSLNKLEL  312 (341)
Q Consensus       301 l~~l~~L~~L~l  312 (341)
                      +..+++|+.|++
T Consensus       250 ~~~l~~L~~L~l  261 (457)
T 3bz5_A          250 VSTLSKLTTLHC  261 (457)
T ss_dssp             CTTCTTCCEEEC
T ss_pred             HHHCCCCCEEec
Confidence            233444444433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=2.6e-18  Score=165.56  Aligned_cols=129  Identities=16%  Similarity=0.136  Sum_probs=83.9

Q ss_pred             cCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeecCCCCC--CccCcCCCCCCeEEEEEeCcE--ee---
Q 044597          180 CRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIELIDDP--MPALEKLPVLQVLKLKYLGRK--LA---  250 (341)
Q Consensus       180 ~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~--~~---  250 (341)
                      +.+++|+.|++++|     .+.. .| ++..+ ++|+.|++++|.++..+  ...++.+++|++|+++.+...  .+   
T Consensus       350 ~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          350 PSPSSFTFLNFTQN-----VFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             SSCCCCCEEECCSS-----CCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred             cCCCCceEEECCCC-----ccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence            55677777777776     4444 44 55666 66666666666654321  123555666666666111100  00   


Q ss_pred             -------------------ecCCCC-CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcE
Q 044597          251 -------------------CSSDGF-PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNK  309 (341)
Q Consensus       251 -------------------~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~  309 (341)
                                         .....+ ++|++|+++++ .++.++...+.+++|+.|++++|. ++.+|.. +..+++|+.
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~  501 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQY  501 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCC
T ss_pred             hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCE
Confidence                               011123 57888888874 577777777788999999999988 7888887 788999999


Q ss_pred             EEEecCC
Q 044597          310 LELWWPE  316 (341)
Q Consensus       310 L~l~~~~  316 (341)
                      |++++||
T Consensus       502 L~l~~N~  508 (562)
T 3a79_B          502 IWLHDNP  508 (562)
T ss_dssp             EECCSCC
T ss_pred             EEecCCC
Confidence            9999877

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=8.7e-19  Score=167.24  Aligned_cols=129  Identities=19%  Similarity=0.186  Sum_probs=81.2

Q ss_pred             cCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeecCCCC--CCccCcCCCCCCeEEEEEeCcE--eee-c
Q 044597          180 CRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIELIDD--PMPALEKLPVLQVLKLKYLGRK--LAC-S  252 (341)
Q Consensus       180 ~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~--~~~-~  252 (341)
                      ..+++|+.|++++|     .+.. .| ++..+ ++|+.|++++|.++..  ....++.+++|++|+++.+...  ++. .
T Consensus       321 ~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          321 SKISPFLHLDFSNN-----LLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             SSCCCCCEEECCSS-----CCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             hhCCcccEEEeECC-----ccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence            45677777777776     4444 44 55666 6666666666665321  1123455556666655221111  110 0


Q ss_pred             CCC---------------------C-CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcE
Q 044597          253 SDG---------------------F-PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNK  309 (341)
Q Consensus       253 ~~~---------------------~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~  309 (341)
                      ...                     + ++|++|+++++ .+..++.....+++|+.|++++|. ++.+|.. +..+++|++
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQK  472 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccE
Confidence            111                     2 56777777764 466777666688999999999997 7788876 788999999


Q ss_pred             EEEecCC
Q 044597          310 LELWWPE  316 (341)
Q Consensus       310 L~l~~~~  316 (341)
                      |++++|+
T Consensus       473 L~l~~N~  479 (520)
T 2z7x_B          473 IWLHTNP  479 (520)
T ss_dssp             EECCSSC
T ss_pred             EECcCCC
Confidence            9999876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=9.9e-19  Score=167.88  Aligned_cols=62  Identities=18%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecC
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGA  131 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~  131 (341)
                      ..+..+++|++|+++ +.+..+|...|+++++|++|++++|.+..+|.. ++++++|++|++++
T Consensus        44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  107 (549)
T 2z81_A           44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG  107 (549)
T ss_dssp             STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred             hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence            345667777777776 466666544337777777777777766666554 67777777777776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=1.4e-18  Score=153.46  Aligned_cols=194  Identities=22%  Similarity=0.229  Sum_probs=114.0

Q ss_pred             CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597           73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE  150 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~  150 (341)
                      .++.+++.+++. +.++.+|..+ .  +++++|++++|.+..++ ..+..+++|++|+++++.+..            ++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~   71 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------LQ   71 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------EE
T ss_pred             cccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------cc
Confidence            344555555555 3555666555 2  45566666666555543 345555555555555522210            11


Q ss_pred             hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCc
Q 044597          151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      . .                          +.+++|+.|+++++     .+..+| .+..+ ++|++|++++|.++..+..
T Consensus        72 ~-~--------------------------~~l~~L~~L~Ls~N-----~l~~l~~~~~~l-~~L~~L~l~~N~l~~l~~~  118 (290)
T 1p9a_G           72 V-D--------------------------GTLPVLGTLDLSHN-----QLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG  118 (290)
T ss_dssp             C-C--------------------------SCCTTCCEEECCSS-----CCSSCCCCTTTC-TTCCEEECCSSCCCCCCSS
T ss_pred             C-C--------------------------CCCCcCCEEECCCC-----cCCcCchhhccC-CCCCEEECCCCcCcccCHH
Confidence            1 2                          34555566666555     555555 55556 5666666666665544444


Q ss_pred             cCcCCCCCCeEEEEEeC-cEee-ecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCccccccCCCCC
Q 044597          230 ALEKLPVLQVLKLKYLG-RKLA-CSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPEQLWCLKS  306 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  306 (341)
                      .++.+++|++|+++.+. ...+ .....+++|+.|++++ +.+..++... ..+++|+.|++.+|. ++.+|.++...++
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~  196 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHL  196 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCC
T ss_pred             HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhccccc
Confidence            56666666666662221 1111 1123456777777776 3466666543 458889999998887 7888888888888


Q ss_pred             CcEEEEecCC
Q 044597          307 LNKLELWWPE  316 (341)
Q Consensus       307 L~~L~l~~~~  316 (341)
                      |+.|++.++|
T Consensus       197 L~~l~L~~Np  206 (290)
T 1p9a_G          197 LPFAFLHGNP  206 (290)
T ss_dssp             CSEEECCSCC
T ss_pred             CCeEEeCCCC
Confidence            9999998876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=162.66  Aligned_cols=203  Identities=19%  Similarity=0.150  Sum_probs=164.0

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCC  147 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~  147 (341)
                      ..+..+.+|++|+++ +.+..++...|.++++|++|+|++|.+..+|. .+..+++|++|+++++.+.          ..
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~----------~~  151 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE----------SI  151 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC----------EE
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc----------cc
Confidence            467889999999998 58888887666999999999999999999986 5899999999999985443          22


Q ss_pred             chhhhhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCC
Q 044597          148 STEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDD  226 (341)
Q Consensus       148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~  226 (341)
                       +...+..+++|++|+++++.  ....++. .+.++++|+.|++++|     .++.+|.+..+ ++|+.|++++|.++..
T Consensus       152 -~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~l-~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          152 -PSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAMC-----NLREIPNLTPL-IKLDELDLSGNHLSAI  222 (440)
T ss_dssp             -CTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTTS-----CCSSCCCCTTC-SSCCEEECTTSCCCEE
T ss_pred             -CHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCCC-----cCccccccCCC-cccCEEECCCCccCcc
Confidence             22228899999999999864  3333333 5788999999999999     88899977788 9999999999998777


Q ss_pred             CCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597          227 PMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA  292 (341)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  292 (341)
                      ....+..+++|+.|+++.+. ... ......+++|++|++++ +.+..++.. ...+++|+.|++.+|+
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence            77789999999999993322 222 22356789999999998 467777644 3568999999999987

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=1.5e-18  Score=152.87  Aligned_cols=198  Identities=17%  Similarity=0.145  Sum_probs=157.1

Q ss_pred             cceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcC-CCCCCceEEeCCCcchhh
Q 044597           75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAIT-LPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~-lp~~i~~~~~~~~~~~~~  151 (341)
                      ..+++.|+++ +.+..+|...|+++++|++|++++|.+..+ |..+..+++|++|+++++. +.          ...+..
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~----------~~~~~~  100 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR----------SVDPAT  100 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC----------CCCTTT
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc----------ccCHHH
Confidence            3578999998 588888876559999999999999988887 6789999999999999843 32          220344


Q ss_pred             hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                       ++.+++|++|+++++..  ....+..+..+++|+.|+++++     .++.+|  .+..+ ++|++|++++|.++..+..
T Consensus       101 -~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A          101 -FHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDN-----ALQALPDDTFRDL-GNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             -TTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCEECTT
T ss_pred             -hcCCcCCCEEECCCCcC--CEECHhHhhCCcCCCEEECCCC-----cccccCHhHhccC-CCccEEECCCCcccccCHH
Confidence             88999999999998852  2223456888999999999998     788887  57889 9999999999998666666


Q ss_pred             cCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597          230 ALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA  292 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  292 (341)
                      .+..+++|++|+++.+. ... +.....+++|++|+++++ .+..++.. ...+++|+.|++.+|+
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence            78999999999993332 222 334567899999999984 56666633 5679999999999998

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.76  E-value=3.4e-18  Score=166.08  Aligned_cols=121  Identities=13%  Similarity=0.035  Sum_probs=74.6

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCC----C------
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPA----H------  137 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~----~------  137 (341)
                      ..+.++++|++|+++ +.+..++...|+++++|++|++++|.+..+ |..++.+++|++|+++++.+..    .      
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            356777778888887 456666433337888888888888766655 5567777888888777732221    1      


Q ss_pred             CceEEeCCCc----chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCC--EEEEEeC
Q 044597          138 PGKYSLHPCC----STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLE--SLKLANE  193 (341)
Q Consensus       138 i~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~--~L~l~~~  193 (341)
                      ++.+.++++.    .++. +..+++|++|+++++..  ....+..++.+++|+  .|++++|
T Consensus       131 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCC--CEECHHHHHTTTTCCSEEEECTTC
T ss_pred             ccEEECCCCcccccCccc-ccCCcccCEEEcccCcc--cccChhhhhhhcccceeEEecCCC
Confidence            1555555421    1244 45578888888887752  222245566777777  5555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=7.9e-19  Score=158.06  Aligned_cols=231  Identities=14%  Similarity=0.108  Sum_probs=167.2

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC---cCCCCCC-------
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA---ITLPAHP-------  138 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~---~~lp~~i-------  138 (341)
                      ..+..+.+|++|+++ +.+..++...|+++++|++|++++|.+..+|..+.  ++|++|++++   ..+|...       
T Consensus        72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            357788889999887 57777744433889999999999888888887665  7888888877   3333321       


Q ss_pred             ceEEeCCCc------chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--cccccc
Q 044597          139 GKYSLHPCC------STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFP  210 (341)
Q Consensus       139 ~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp  210 (341)
                      +.+.++++.      .+.. ++.+ +|++|+++++.   ...+|..+.  ++|+.|++++|     .+..++  .+..+ 
T Consensus       150 ~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n-----~i~~~~~~~l~~l-  216 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAK---LTGIPKDLP--ETLNELHLDHN-----KIQAIELEDLLRY-  216 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSB---CSSCCSSSC--SSCSCCBCCSS-----CCCCCCTTSSTTC-
T ss_pred             CEEECCCCccccCCCCccc-ccCC-ccCEEECcCCC---CCccCcccc--CCCCEEECCCC-----cCCccCHHHhcCC-
Confidence            555555422      0223 6666 89999999885   334544433  79999999998     777776  78889 


Q ss_pred             CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecC-------CCCCc
Q 044597          211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGI-------KAMPK  282 (341)
Q Consensus       211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~l~~  282 (341)
                      ++|+.|++++|.+.......++.+++|++|+++.+. ..++.....+++|++|++++ +.++.++...       ..+++
T Consensus       217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCC
T ss_pred             CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC-CCCCccChhHcccccccccccc
Confidence            999999999999877666679999999999993332 33444456789999999998 4576665332       12578


Q ss_pred             ccEEEEecCCCC--CccccccCCCCCCcEEEEecCC
Q 044597          283 LECVIINPCAHL--KRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       283 L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      |+.|.+.+|+..  ...|..+..+++|+.+++++|.
T Consensus       296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            999999999943  2345667889999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=7.1e-19  Score=156.45  Aligned_cols=214  Identities=19%  Similarity=0.190  Sum_probs=169.2

Q ss_pred             eeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      .++.+ ..++.+|..+ .  ++|++|++++|.+..+|.. +.++++|++|+++++.+..    .   +.. +.. +..++
T Consensus        11 ~l~c~~~~l~~ip~~~-~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~----~---~~~-~~~-~~~~~   78 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI-P--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF----K---GCC-SQS-DFGTT   78 (306)
T ss_dssp             EEECCSSCCSSCCSCC-C--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE----E---EEE-EHH-HHSCS
T ss_pred             EEEcCCCCcccCCCCC-C--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc----c---cCc-ccc-ccccc
Confidence            45555 4788999877 3  6899999999999999876 6899999999999844421    0   011 234 66799


Q ss_pred             CCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597          158 NLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPMPALEKL  234 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l  234 (341)
                      +|++|+++++.   ...++..+..+++|+.|+++++     .+..++   .+..+ ++|++|++++|.+.......++.+
T Consensus        79 ~L~~L~Ls~n~---i~~l~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l  149 (306)
T 2z66_A           79 SLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQHS-----NLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGL  149 (306)
T ss_dssp             CCCEEECCSCS---EEEEEEEEETCTTCCEEECTTS-----EEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTC
T ss_pred             ccCEEECCCCc---cccChhhcCCCCCCCEEECCCC-----cccccccchhhhhc-cCCCEEECCCCcCCccchhhcccC
Confidence            99999999984   4456667889999999999998     777765   46788 999999999999866666778999


Q ss_pred             CCCCeEEEEEe---CcEeeecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCcccc-ccCCCCCCcE
Q 044597          235 PVLQVLKLKYL---GRKLACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNK  309 (341)
Q Consensus       235 ~~L~~L~l~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~  309 (341)
                      ++|++|+++.+   +...+.....+++|++|+++++ .+..+ +...+.+++|+.|++++|. +..++. .+..+++|++
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCE
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCE
Confidence            99999999222   2234455678999999999985 46666 3456679999999999998 666654 6788999999


Q ss_pred             EEEecCC
Q 044597          310 LELWWPE  316 (341)
Q Consensus       310 L~l~~~~  316 (341)
                      |++++|.
T Consensus       228 L~L~~N~  234 (306)
T 2z66_A          228 LDYSLNH  234 (306)
T ss_dssp             EECTTSC
T ss_pred             eECCCCC
Confidence            9999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=2e-18  Score=153.84  Aligned_cols=198  Identities=19%  Similarity=0.199  Sum_probs=153.4

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      ....+.+|+.|++. +.+..+| .+ ..+++|++|++++|.+..+|. +..+++|++|+++++.+..            +
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~------------~  100 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN------------V  100 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC------------C
T ss_pred             cHHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC------------c
Confidence            34457889999998 5788887 57 999999999999999999987 9999999999999855542            5


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCc
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      +. ++.+++|++|+++++...   .++ .+..+++|+.|++++|     .+..++.+..+ ++|+.|++++|.++.  ++
T Consensus       101 ~~-~~~l~~L~~L~l~~n~l~---~~~-~l~~l~~L~~L~l~~n-----~l~~~~~l~~l-~~L~~L~l~~n~l~~--~~  167 (308)
T 1h6u_A          101 SA-IAGLQSIKTLDLTSTQIT---DVT-PLAGLSNLQVLYLDLN-----QITNISPLAGL-TNLQYLSIGNAQVSD--LT  167 (308)
T ss_dssp             GG-GTTCTTCCEEECTTSCCC---CCG-GGTTCTTCCEEECCSS-----CCCCCGGGGGC-TTCCEEECCSSCCCC--CG
T ss_pred             hh-hcCCCCCCEEECCCCCCC---Cch-hhcCCCCCCEEECCCC-----ccCcCccccCC-CCccEEEccCCcCCC--Ch
Confidence            56 899999999999988633   333 3889999999999998     77777766778 899999999998744  33


Q ss_pred             cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccc
Q 044597          230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPE  299 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~  299 (341)
                      .+..+++|+.|+++.+..........+++|++|+++++ .+..++ ....+++|+.|++.+|+ +...|.
T Consensus       168 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          168 PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred             hhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence            48889999999994333222222556788888888874 455555 35678888888888887 555553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=158.95  Aligned_cols=107  Identities=16%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      ..+..+++|++|+++ +.+..++...|+++++|++|++++|.+..+|..  .+++|++|+++++.+..        -.. 
T Consensus        39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~--------~~~-  107 (520)
T 2z7x_B           39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDA--------LPI-  107 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSS--------CCC-
T ss_pred             hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcccc--------ccc-
Confidence            356777888888887 477776433338888888888888888888776  78888888888733321        011 


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCC--CEEEEEeC
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCL--ESLKLANE  193 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L--~~L~l~~~  193 (341)
                      +.. ++++++|++|+++++....     ..+..+++|  +.|++++|
T Consensus       108 p~~-~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B          108 CKE-FGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CGG-GGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEEC
T ss_pred             hhh-hccCCcceEEEecCcccch-----hhccccccceeeEEEeecc
Confidence            334 7777777777777765211     234445555  66666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=2.3e-18  Score=153.43  Aligned_cols=143  Identities=19%  Similarity=0.241  Sum_probs=63.2

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE  150 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~  150 (341)
                      +..+.+|++|+++ +.+..+|. + +++++|++|++++|.+..+| .+..+++|++|+++++.+..            ++
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~------------~~  123 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD------------VT  123 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC------------CG
T ss_pred             hhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCC------------ch
Confidence            3444445555554 34444444 3 45555555555555444443 34445555555554432221            22


Q ss_pred             hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCcc
Q 044597          151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      . ++.+++|++|+++++...   .++. ++.+++|+.|++++|     .+..++.+..+ ++|+.|++++|.++.  ++.
T Consensus       124 ~-l~~l~~L~~L~l~~n~l~---~~~~-l~~l~~L~~L~l~~n-----~l~~~~~l~~l-~~L~~L~l~~n~l~~--~~~  190 (308)
T 1h6u_A          124 P-LAGLSNLQVLYLDLNQIT---NISP-LAGLTNLQYLSIGNA-----QVSDLTPLANL-SKLTTLKADDNKISD--ISP  190 (308)
T ss_dssp             G-GTTCTTCCEEECCSSCCC---CCGG-GGGCTTCCEEECCSS-----CCCCCGGGTTC-TTCCEEECCSSCCCC--CGG
T ss_pred             h-hcCCCCCCEEECCCCccC---cCcc-ccCCCCccEEEccCC-----cCCCChhhcCC-CCCCEEECCCCccCc--Chh
Confidence            3 444555555555444311   1111 444455555555444     44444333344 445555555554422  122


Q ss_pred             CcCCCCCCeEEE
Q 044597          231 LEKLPVLQVLKL  242 (341)
Q Consensus       231 l~~l~~L~~L~l  242 (341)
                      +..+++|++|++
T Consensus       191 l~~l~~L~~L~L  202 (308)
T 1h6u_A          191 LASLPNLIEVHL  202 (308)
T ss_dssp             GGGCTTCCEEEC
T ss_pred             hcCCCCCCEEEc
Confidence            444455555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=2.2e-18  Score=161.72  Aligned_cols=204  Identities=17%  Similarity=0.133  Sum_probs=164.0

Q ss_pred             ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCC
Q 044597           69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPC  146 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~  146 (341)
                      ...+..+.+|++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +..+++|++|+++++.+.          .
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----------~  161 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE----------S  161 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC----------E
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc----------e
Confidence            3467889999999998 588888866669999999999999999999865 789999999999985443          2


Q ss_pred             cchhhhhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCC
Q 044597          147 CSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELID  225 (341)
Q Consensus       147 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~  225 (341)
                      . +...+.++++|++|+++++.  ....++. .+..+++|+.|++++|     .+..+|.+..+ ++|+.|++++|.+..
T Consensus       162 ~-~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~l-~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          162 I-PSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMC-----NIKDMPNLTPL-VGLEELEMSGNHFPE  232 (452)
T ss_dssp             E-CTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTS-----CCSSCCCCTTC-TTCCEEECTTSCCSE
T ss_pred             e-CHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCC-----ccccccccccc-ccccEEECcCCcCcc
Confidence            2 22228899999999999864  3334433 4788999999999998     88888877788 999999999999877


Q ss_pred             CCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597          226 DPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA  292 (341)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  292 (341)
                      .....+..+++|+.|+++.+. ... ......+++|++|+++++ .+..++.. ...+++|+.|++.+|+
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            777789999999999993322 222 233567899999999984 67777644 3568999999999987

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=3.6e-18  Score=153.55  Aligned_cols=224  Identities=19%  Similarity=0.181  Sum_probs=146.7

Q ss_pred             cceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCC----CCC------ceEE
Q 044597           75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLP----AHP------GKYS  142 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp----~~i------~~~~  142 (341)
                      ..+++++++. ..+..+|..+ .  ++|++|++++|.+..+|. .+.++++|++|+++++.+.    ..+      +.+.
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~-~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDL-P--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSC-C--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCCeEEEecCCCccccCccC-C--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            3478889987 4888999877 3  689999999999999876 6899999999999984332    222      3344


Q ss_pred             eCCCcchhhhh--CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc---Cc-ccccccCCccEE
Q 044597          143 LHPCCSTEEIL--GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT---IL-AEYQFPPSLTHL  216 (341)
Q Consensus       143 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~---lp-~~~~lp~~L~~L  216 (341)
                      ++++. +.+ +  .-.++|++|+++++..  ....+..+..+++|+.|+++++     .+..   .+ .+..+ ++|++|
T Consensus       107 Ls~n~-l~~-l~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~~l-~~L~~L  176 (330)
T 1xku_A          107 LSKNQ-LKE-LPEKMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTN-----PLKSSGIENGAFQGM-KKLSYI  176 (330)
T ss_dssp             CCSSC-CSB-CCSSCCTTCCEEECCSSCC--CBBCHHHHTTCTTCCEEECCSS-----CCCGGGBCTTGGGGC-TTCCEE
T ss_pred             CCCCc-CCc-cChhhcccccEEECCCCcc--cccCHhHhcCCccccEEECCCC-----cCCccCcChhhccCC-CCcCEE
Confidence            43321 111 1  0113455555554431  1122234666777777777665     4432   23 55666 777777


Q ss_pred             EEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCC
Q 044597          217 SFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAH  293 (341)
Q Consensus       217 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~  293 (341)
                      ++++|.++..+. .+  .++|++|+++.+. ... +.....+++|++|+++++ .+..++. ..+.+++|+.|++++|. 
T Consensus       177 ~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-  251 (330)
T 1xku_A          177 RIADTNITTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-  251 (330)
T ss_dssp             ECCSSCCCSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-
T ss_pred             ECCCCccccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-
Confidence            777777543222 11  2677777772222 112 233456788999998874 4555553 45578899999999997 


Q ss_pred             CCccccccCCCCCCcEEEEecCC
Q 044597          294 LKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       294 l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +..+|.++..+++|++|++++|+
T Consensus       252 l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          252 LVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CccCChhhccCCCcCEEECCCCc
Confidence            77899888889999999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=1.5e-18  Score=168.71  Aligned_cols=199  Identities=15%  Similarity=0.087  Sum_probs=147.6

Q ss_pred             hcCCCccEEecCCcccccc---chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhh
Q 044597           96 SSLLNLYTLEMPFSYIDHT---ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQ  172 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~l---p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  172 (341)
                      +.+++|++|++++|.+..+   |..+..+++|++|+++++.+.          .. +.. ++.+++|++|+++++..  .
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~----------~~-~~~-~~~l~~L~~L~l~~n~l--~  412 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI----------IM-SAN-FMGLEELQHLDFQHSTL--K  412 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE----------EE-CCC-CTTCTTCCEEECTTSEE--E
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc----------cc-hhh-ccCCCCCCeeECCCCcc--C
Confidence            5666666666666655544   566666777777777662221          22 334 88899999999998852  2


Q ss_pred             hHHH-HHhcCCCCCCEEEEEeCCCCCCCCcc-Cc-ccccccCCccEEEEEeecCCCC-CCccCcCCCCCCeEEEEEeC-c
Q 044597          173 SLLS-KSLCRLSCLESLKLANESKMPRRSNT-IL-AEYQFPPSLTHLSFSNIELIDD-PMPALEKLPVLQVLKLKYLG-R  247 (341)
Q Consensus       173 ~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~-~  247 (341)
                      ...+ ..+..+++|+.|++++|     .+.. .| .+..+ ++|++|++++|.+... ....++.+++|++|+++.+. .
T Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (606)
T 3vq2_A          413 RVTEFSAFLSLEKLLYLDISYT-----NTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE  486 (606)
T ss_dssp             STTTTTTTTTCTTCCEEECTTS-----CCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CccChhhhhccccCCEEECcCC-----CCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence            2223 46788999999999998     5555 55 78889 9999999999997653 45578999999999993332 2


Q ss_pred             Ee-eecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCccccccCCCC-CCcEEEEecCC
Q 044597          248 KL-ACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPEQLWCLK-SLNKLELWWPE  316 (341)
Q Consensus       248 ~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~  316 (341)
                      .. +.....+++|++|+++++. +..+ +...+.+++|++|++++|. ++.+|..+..++ +|++|++++||
T Consensus       487 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          487 QISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred             ccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence            22 2345678999999999964 5555 5667789999999999998 889998888887 59999999976

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=2.2e-18  Score=151.05  Aligned_cols=199  Identities=20%  Similarity=0.194  Sum_probs=102.9

Q ss_pred             eeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597           77 RLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG  154 (341)
Q Consensus        77 ~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~  154 (341)
                      .+++|+++ +.+..+|...|+++++|++|++++|.+..++. .+..+++|++|+++++.+.          ...+.. ++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~-~~   97 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----------SLALGA-FS   97 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----------EECTTT-TT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC----------ccChhh-hc
Confidence            45566665 35555555333666666666666665555543 4555666666666553222          110222 55


Q ss_pred             CCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCcc--Cc-ccccccCCccEEEEEeecCCCCCCcc
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNT--IL-AEYQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      ++++|++|+++++.   ...++. .++.+++|+.|+++++     .++.  +| ++..+ ++|++|++++|.++......
T Consensus        98 ~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           98 GLSSLQKLVAVETN---LASLENFPIGHLKTLKELNVAHN-----LIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             TCTTCCEEECTTSC---CCCSTTCCCTTCTTCCEEECCSS-----CCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGG
T ss_pred             CCccccEEECCCCC---ccccCchhcccCCCCCEEECcCC-----ccceecCchhhccC-CCCCEEECCCCCCCcCCHHH
Confidence            55555555555543   111111 2445555555555554     4433  34 44555 55555555555543333333


Q ss_pred             CcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcE
Q 044597          231 LEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNK  309 (341)
Q Consensus       231 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~  309 (341)
                      +..+++|+.+.+                  +|++++ +.+..++.......+|+.|++++|. ++.+|.. +.++++|+.
T Consensus       169 ~~~l~~L~~l~l------------------~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  228 (276)
T 2z62_A          169 LRVLHQMPLLNL------------------SLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQK  228 (276)
T ss_dssp             GHHHHTCTTCCE------------------EEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCE
T ss_pred             hhhhhhccccce------------------eeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccE
Confidence            333333332111                  455554 3455555444445577777777777 6666654 366777888


Q ss_pred             EEEecC
Q 044597          310 LELWWP  315 (341)
Q Consensus       310 L~l~~~  315 (341)
                      |++++|
T Consensus       229 L~l~~N  234 (276)
T 2z62_A          229 IWLHTN  234 (276)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            887753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=2.2e-18  Score=156.45  Aligned_cols=220  Identities=16%  Similarity=0.164  Sum_probs=164.9

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      .++++|+++ +.+..+|...|+++++|++|++++|.+..++ ..+.++++|++|+++++.+.          .. ++..+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~-~~~~~  120 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS----------NL-SSSWF  120 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS----------SC-CHHHH
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC----------cC-CHhHh
Confidence            478999998 5888888754599999999999999888874 56899999999999985443          22 33338


Q ss_pred             CCCCCCceEEEEeecchhhhHHHH--HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSK--SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~--~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      +.+++|++|+++++.   ...++.  .+..+++|+.|++++|.    .++.++  .+..+ ++|++|++++|.+......
T Consensus       121 ~~l~~L~~L~L~~n~---l~~l~~~~~~~~l~~L~~L~l~~n~----~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          121 KPLSSLTFLNLLGNP---YKTLGETSLFSHLTKLQILRVGNMD----TFTKIQRKDFAGL-TFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             TTCTTCSEEECTTCC---CSSSCSSCSCTTCTTCCEEEEEESS----SCCEECTTTTTTC-CEEEEEEEEETTCCEECTT
T ss_pred             CCCccCCEEECCCCC---CcccCchhhhccCCCCcEEECCCCc----cccccCHHHccCC-CCCCEEECCCCCcCccCHH
Confidence            899999999999884   445554  57889999999999975    567765  67788 8999999999998766677


Q ss_pred             cCcCCCCCCeEEEEEeCcE-eee-cCCCCCcccEEEEecCCCCCceeec----CCCCCcccEEEEecCCCCC-----ccc
Q 044597          230 ALEKLPVLQVLKLKYLGRK-LAC-SSDGFPKLKVLHLKSMLWLEEWTMG----IKAMPKLECVIINPCAHLK-----RIP  298 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~-~~~-~~~~~~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~c~~l~-----~lp  298 (341)
                      .++.+++|++|+++.+... .+. ....+++|++|+++++ .+..++..    ....+.++.+.+.++. +.     .+|
T Consensus       193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~  270 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVM  270 (353)
T ss_dssp             TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHH
T ss_pred             HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhcccccccc-ccCcchhhhH
Confidence            8889999999999443311 111 1224789999999984 34444321    1235667888888776 33     367


Q ss_pred             cccCCCCCCcEEEEecCC
Q 044597          299 EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       299 ~~l~~l~~L~~L~l~~~~  316 (341)
                      ..+.++++|++|++++|.
T Consensus       271 ~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             HHHHTCTTCCEEECCSSC
T ss_pred             HHHhcccCCCEEECCCCC
Confidence            778889999999999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.74  E-value=1.9e-18  Score=167.87  Aligned_cols=230  Identities=15%  Similarity=0.082  Sum_probs=158.1

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCC--------CCCceEE
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLP--------AHPGKYS  142 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp--------~~i~~~~  142 (341)
                      +..+.+|+.|++. +.+..+| .+ ..+++|++|++++|.+..+| .+ .+++|++|+++++..-        +.++.+.
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~-~l-~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE-DV-PKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC-CC-CTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhh-hc-cccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            5667788888887 4777888 66 88899999999999888888 45 8888888888873111        1114444


Q ss_pred             eCCCc------chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCc
Q 044597          143 LHPCC------STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSL  213 (341)
Q Consensus       143 ~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L  213 (341)
                      ++++.      .+.. ++.+++|++|+++++.   ...+|..+..+++|+.|++++|     .+...+   .+..+ ++|
T Consensus       357 ls~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~---l~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l-~~L  426 (606)
T 3vq2_A          357 LSRNALSFSGCCSYS-DLGTNSLRHLDLSFNG---AIIMSANFMGLEELQHLDFQHS-----TLKRVTEFSAFLSL-EKL  426 (606)
T ss_dssp             CCSSCEEEEEECCHH-HHCCSCCCEEECCSCS---EEEECCCCTTCTTCCEEECTTS-----EEESTTTTTTTTTC-TTC
T ss_pred             CcCCccCCCcchhhh-hccCCcccEeECCCCc---cccchhhccCCCCCCeeECCCC-----ccCCccChhhhhcc-ccC
Confidence            44321      0223 5667777777777663   3334455667777777777776     444442   45667 788


Q ss_pred             cEEEEEeecCCCCCCccCcCCCCCCeEEEEE---eCcEeeecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEe
Q 044597          214 THLSFSNIELIDDPMPALEKLPVLQVLKLKY---LGRKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIIN  289 (341)
Q Consensus       214 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~  289 (341)
                      ++|++++|.+.......++.+++|++|+++.   .+...+.....+++|++|+++++ .+..++ ...+.+++|++|+++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECC
Confidence            8888888876655666678888888888821   11124445567888999998885 455543 445678899999999


Q ss_pred             cCCCCCccccccCCCCCCcEEEEecCC
Q 044597          290 PCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       290 ~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +|......|..+.++++|++|++++|.
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            997333347788889999999999886

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=1.3e-17  Score=142.97  Aligned_cols=203  Identities=15%  Similarity=0.135  Sum_probs=137.5

Q ss_pred             CcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcC-CCCCCceEEeCCCcchhhhhCCCCCCceEEE
Q 044597           87 LKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAIT-LPAHPGKYSLHPCCSTEEILGRLPNLQNLRI  164 (341)
Q Consensus        87 ~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~-lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l  164 (341)
                      ++++|. + ..  +|++|++++|.+..+|. .+..+++|++|+++++. +.          .. ++.+++.+++|++|++
T Consensus        23 l~~ip~-~-~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~----------~i-~~~~f~~l~~L~~L~l   87 (239)
T 2xwt_C           23 IQRIPS-L-PP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ----------QL-ESHSFYNLSKVTHIEI   87 (239)
T ss_dssp             CSSCCC-C-CT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC----------EE-CTTTEESCTTCCEEEE
T ss_pred             ccccCC-C-CC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc----------ee-CHhHcCCCcCCcEEEC
Confidence            556666 4 33  67777777777777765 56777777777777632 32          12 2212677777777777


Q ss_pred             Ee-ecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCcc---EEEEEee-cCCCCCCccCcCCCCCC
Q 044597          165 WG-DLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLT---HLSFSNI-ELIDDPMPALEKLPVLQ  238 (341)
Q Consensus       165 ~~-~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~---~L~l~~~-~l~~~~~~~l~~l~~L~  238 (341)
                      ++ +.   ...++ ..+..+++|+.|++++|     .++.+|.+..+ ++|+   .|++++| .++..+...+..+++|+
T Consensus        88 ~~~n~---l~~i~~~~f~~l~~L~~L~l~~n-----~l~~lp~~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C           88 RNTRN---LTYIDPDALKELPLLKFLGIFNT-----GLKMFPDLTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             EEETT---CCEECTTSEECCTTCCEEEEEEE-----CCCSCCCCTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             CCCCC---eeEcCHHHhCCCCCCCEEeCCCC-----CCccccccccc-cccccccEEECCCCcchhhcCcccccchhcce
Confidence            76 43   33333 34667788888888877     66777744455 5665   8888888 76555555688888888


Q ss_pred             -eEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeec-CCCC-CcccEEEEecCCCCCccccccCCCCCCcEEEEec
Q 044597          239 -VLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAM-PKLECVIINPCAHLKRIPEQLWCLKSLNKLELWW  314 (341)
Q Consensus       239 -~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  314 (341)
                       +|+++.+. ..++......++|++|+++++..++.++.. ...+ ++|+.|++++|+ ++.+|..  .+++|+.|++.+
T Consensus       159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARN  235 (239)
T ss_dssp             EEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTT
T ss_pred             eEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccC
Confidence             88883332 223222223378999999986568877643 4567 899999999988 7888865  688999999988


Q ss_pred             CC
Q 044597          315 PE  316 (341)
Q Consensus       315 ~~  316 (341)
                      +.
T Consensus       236 ~~  237 (239)
T 2xwt_C          236 TW  237 (239)
T ss_dssp             C-
T ss_pred             cc
Confidence            76

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.73  E-value=3.1e-17  Score=158.02  Aligned_cols=106  Identities=18%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      ..+..+++|++|+++ +.+..++...|+++++|++|++++|.+..+|..  .+++|++|+++++.+.          ...
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~----------~l~  137 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFD----------VLP  137 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCS----------BCC
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCcc----------ccC
Confidence            356677777777777 467766444447777777788777777777766  6777777777773331          110


Q ss_pred             -hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCC--CEEEEEeC
Q 044597          149 -TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCL--ESLKLANE  193 (341)
Q Consensus       149 -~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L--~~L~l~~~  193 (341)
                       +.. ++++++|++|+++++....     ..+..+++|  +.|+++++
T Consensus       138 ~p~~-~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          138 VCKE-FGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CCGG-GGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEEEES
T ss_pred             chHh-hcccCcccEEecCCCcccc-----CchhhhhhceeeEEEeecc
Confidence             234 7777788888887765211     123333444  66666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=4e-17  Score=153.19  Aligned_cols=220  Identities=18%  Similarity=0.119  Sum_probs=125.6

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCC-------CCceEEe
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPA-------HPGKYSL  143 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~-------~i~~~~~  143 (341)
                      +..+++|++|+++ +.+..+|  + +++++|++|++++|.+..+|  ++.+++|++|+++++.+..       .++.+.+
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l  155 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDC  155 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEEC
T ss_pred             cccCCCCCEEECcCCCCceee--c-CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEEC
Confidence            6677888888887 4677775  5 88888888888888777775  7788888888887732211       1144444


Q ss_pred             CCC-cchh--hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEe
Q 044597          144 HPC-CSTE--EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSN  220 (341)
Q Consensus       144 ~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~  220 (341)
                      +++ . ..  . ++.+++|++|+++++.   ...++  ++.+++|+.|++++|     .++.++ +..+ ++|+.|++++
T Consensus       156 ~~n~~-~~~~~-~~~l~~L~~L~ls~n~---l~~l~--l~~l~~L~~L~l~~N-----~l~~~~-l~~l-~~L~~L~Ls~  221 (457)
T 3bz5_A          156 HLNKK-ITKLD-VTPQTQLTTLDCSFNK---ITELD--VSQNKLLNRLNCDTN-----NITKLD-LNQN-IQLTFLDCSS  221 (457)
T ss_dssp             TTCSC-CCCCC-CTTCTTCCEEECCSSC---CCCCC--CTTCTTCCEEECCSS-----CCSCCC-CTTC-TTCSEEECCS
T ss_pred             CCCCc-ccccc-cccCCcCCEEECCCCc---cceec--cccCCCCCEEECcCC-----cCCeec-cccC-CCCCEEECcC
Confidence            432 1 11  2 5566777777777664   22232  555666666666655     444443 3344 4555555555


Q ss_pred             ecCCCCCCccCcCCCCCCeEEEEEeC-c------------------------------EeeecCCCCCcccEEEEecCCC
Q 044597          221 IELIDDPMPALEKLPVLQVLKLKYLG-R------------------------------KLACSSDGFPKLKVLHLKSMLW  269 (341)
Q Consensus       221 ~~l~~~~~~~l~~l~~L~~L~l~~~~-~------------------------------~~~~~~~~~~~L~~L~l~~~~~  269 (341)
                      |.++..  + ++.+++|+.|+++.+. .                              ......+.+++|++|+++++..
T Consensus       222 N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          222 NKLTEI--D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             SCCSCC--C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred             Cccccc--C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence            554331  1 4444455555441111 0                              0011123456666666666655


Q ss_pred             CCceeec--------CCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          270 LEEWTMG--------IKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       270 l~~~~~~--------~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +..++..        .+.+++|+.|++++|. ++.++  +.++++|+.|+++++.
T Consensus       299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred             cceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence            5444421        2344566666666665 55553  6677788888877765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=1.9e-17  Score=144.59  Aligned_cols=192  Identities=23%  Similarity=0.296  Sum_probs=119.1

Q ss_pred             eeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597           78 LRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR  155 (341)
Q Consensus        78 Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~  155 (341)
                      .+.++++ ..++.+|..+ .  +++++|++++|.+..+|. .+..+++|++|+++++.+.          .. ++..++.
T Consensus        18 ~~~l~~~~~~l~~ip~~~-~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~i-~~~~~~~   83 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNI-P--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ----------TL-PAGIFKE   83 (270)
T ss_dssp             TTEEECTTSCCSSCCSCC-C--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS----------CC-CTTTTSS
T ss_pred             CCEEEccCCCCCccCCCC-C--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC----------ee-ChhhhcC
Confidence            4667776 4788888766 3  678899999998888875 6788888888888874332          22 2221567


Q ss_pred             CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCc
Q 044597          156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALE  232 (341)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~  232 (341)
                      +++|++|+++++.   ...++ ..+..+++|+.|+++++     .+..+|  .+..+ ++|++|++++|.++..+...++
T Consensus        84 l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           84 LKNLETLWVTDNK---LQALPIGVFDQLVNLAELRLDRN-----QLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             CTTCCEEECCSSC---CCCCCTTTTTTCSSCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCEEECCCCc---CCcCCHhHcccccCCCEEECCCC-----ccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHcc
Confidence            7777777777764   22222 23466677777777766     566655  45566 6777777777766544444455


Q ss_pred             CCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCccccc-cCCCCCCcEE
Q 044597          233 KLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNKL  310 (341)
Q Consensus       233 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L  310 (341)
                      .+++|++|++                      +++ .+..++.. ...+++|+.|++++|. ++.+|.. +..+++|+.|
T Consensus       155 ~l~~L~~L~L----------------------~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          155 KLTSLKELRL----------------------YNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             TCTTCCEEEC----------------------CSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             CCcccceeEe----------------------cCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEE
Confidence            5666666655                      331 23333321 2345666666666664 5555543 4556666666


Q ss_pred             EEecCC
Q 044597          311 ELWWPE  316 (341)
Q Consensus       311 ~l~~~~  316 (341)
                      ++++||
T Consensus       211 ~l~~N~  216 (270)
T 2o6q_A          211 QLQENP  216 (270)
T ss_dssp             ECCSSC
T ss_pred             EecCCC
Confidence            666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=6.9e-18  Score=150.58  Aligned_cols=213  Identities=20%  Similarity=0.190  Sum_probs=121.3

Q ss_pred             eeeeccC-CCCc--ccChhhhh-------cCCCccEEecCCcccc-ccchhh--cccccCceeeecCcCCCCCCceEEeC
Q 044597           78 LRENSII-PSLK--SLPSSFLS-------SLLNLYTLEMPFSYID-HTADEF--WKMSKLRYLNFGAITLPAHPGKYSLH  144 (341)
Q Consensus        78 Lr~L~l~-~~~~--~lp~~if~-------~L~~L~~L~Ls~~~~~-~lp~~i--~~L~~L~~L~l~~~~lp~~i~~~~~~  144 (341)
                      ++.|+++ +.+.  .+|..+ .       ++++|++|++++|.+. .+|..+  ..+++|++|+++++.+.         
T Consensus        65 L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------  134 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA---------  134 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---------
T ss_pred             HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---------
Confidence            5555555 2332  345544 3       5666666666666555 456554  66666666666663332         


Q ss_pred             CCcchhhhhCCC-----CCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc---Cc-cc--ccccCCc
Q 044597          145 PCCSTEEILGRL-----PNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT---IL-AE--YQFPPSL  213 (341)
Q Consensus       145 ~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~---lp-~~--~~lp~~L  213 (341)
                       .. +.. ++.+     ++|++|+++++.  .....+..++.+++|+.|++++|     .+..   +| .+  ..+ ++|
T Consensus       135 -~~-~~~-~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~~~~~l-~~L  203 (312)
T 1wwl_A          135 -TR-DAW-LAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDN-----PELGERGLISALCPLKF-PTL  203 (312)
T ss_dssp             -SS-SSH-HHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSC-----TTCHHHHHHHHSCTTSC-TTC
T ss_pred             -ch-hHH-HHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCEEECCCC-----CcCcchHHHHHHHhccC-CCC
Confidence             11 111 2222     666666666664  11122245566666666666665     3222   22 22  556 666


Q ss_pred             cEEEEEeecCCCC---CCccCcCCCCCCeEEEEEeCcEe-e--ecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEE
Q 044597          214 THLSFSNIELIDD---PMPALEKLPVLQVLKLKYLGRKL-A--CSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVI  287 (341)
Q Consensus       214 ~~L~l~~~~l~~~---~~~~l~~l~~L~~L~l~~~~~~~-~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~  287 (341)
                      ++|++++|.++..   ....+..+++|++|+++.+.... .  .....+++|++|+++++ .++.++....  ++|++|+
T Consensus       204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~  280 (312)
T 1wwl_A          204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLD  280 (312)
T ss_dssp             CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEE
T ss_pred             CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEE
Confidence            6666666665321   11123355666666662221111 1  12234577888888873 4666665543  7899999


Q ss_pred             EecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          288 INPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       288 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +++|. ++.+|. +..+++|++|++++++
T Consensus       281 Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          281 LSYNR-LDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred             CCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence            99887 777776 7888999999999887

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=8.8e-18  Score=148.32  Aligned_cols=170  Identities=19%  Similarity=0.111  Sum_probs=130.4

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG  154 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~  154 (341)
                      ..++.|+++ +.+..++...|.++++|++|++++|.+..+|.. +.+++|++|+++++.+.          .. +.. +.
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~----------~l-~~~-~~   97 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ----------SL-PLL-GQ   97 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS----------SC-CCC-TT
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC----------cC-chh-hc
Confidence            578999998 588888766559999999999999999998865 89999999999995443          23 334 78


Q ss_pred             CCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL  231 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l  231 (341)
                      .+++|++|+++++.   ...++ ..+..+++|+.|++++|     .++.+|  .+..+ ++|+.|++++|.++..+...+
T Consensus        98 ~l~~L~~L~l~~N~---l~~l~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~  168 (290)
T 1p9a_G           98 TLPALTVLDVSFNR---LTSLPLGALRGLGELQELYLKGN-----ELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLL  168 (290)
T ss_dssp             TCTTCCEEECCSSC---CCCCCSSTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECTTSCCSCCCTTTT
T ss_pred             cCCCCCEEECCCCc---CcccCHHHHcCCCCCCEEECCCC-----CCCccChhhcccc-cCCCEEECCCCcCCccCHHHh
Confidence            88999999999885   33443 45788899999999988     788887  46778 899999999999876666667


Q ss_pred             cCCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecC
Q 044597          232 EKLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSM  267 (341)
Q Consensus       232 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~  267 (341)
                      ..+++|+.|+++.+. ..++......++|+.|.+.+.
T Consensus       169 ~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence            888888888883322 233333445567777777763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.72  E-value=6.6e-18  Score=162.75  Aligned_cols=230  Identities=17%  Similarity=0.123  Sum_probs=165.2

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCC--------CCCceE
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLP--------AHPGKY  141 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp--------~~i~~~  141 (341)
                      .+..+.+|+.|++. +.+..+|..+ ..+ +|++|++++|.+..+|.  ..+++|++|+++++.+.        +.++.+
T Consensus       277 ~~~~l~~L~~L~l~~~~l~~l~~~~-~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L  352 (570)
T 2z63_A          277 LFNCLTNVSSFSLVSVTIERVKDFS-YNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL  352 (570)
T ss_dssp             TTGGGTTCSEEEEESCEECSCCBCC-SCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEE
T ss_pred             hhcCcCcccEEEecCccchhhhhhh-ccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccccccccccCCCCCEE
Confidence            45566778888886 4677788777 777 88888888887777775  56777777777762211        112455


Q ss_pred             EeCCCc-c-----hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c--ccccccCC
Q 044597          142 SLHPCC-S-----TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L--AEYQFPPS  212 (341)
Q Consensus       142 ~~~~~~-~-----~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p--~~~~lp~~  212 (341)
                      .++++. .     +.. +..+++|++|+++++.   ...++..+..+++|+.|++++|     .+... |  .+..+ ++
T Consensus       353 ~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~---l~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~~l-~~  422 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQHS-----NLKQMSEFSVFLSL-RN  422 (570)
T ss_dssp             ECCSSCCBEEEEEEHH-HHTCSCCCEEECCSCS---EEEEEEEEETCTTCCEEECTTS-----EEESCTTSCTTTTC-TT
T ss_pred             eCcCCccCcccccccc-ccccCccCEEECCCCc---cccccccccccCCCCEEEccCC-----ccccccchhhhhcC-CC
Confidence            554421 0     223 6678888888888774   3333444778888888888877     55554 2  46678 89


Q ss_pred             ccEEEEEeecCCCCCCccCcCCCCCCeEEEEEe---CcEeeecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEE
Q 044597          213 LTHLSFSNIELIDDPMPALEKLPVLQVLKLKYL---GRKLACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVII  288 (341)
Q Consensus       213 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l  288 (341)
                      |++|++++|.+.......++.+++|++|+++.+   ....+.....+++|++|+++++. +..+ +...+.+++|++|++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeC
Confidence            999999999876666677888999999999221   12355566789999999999864 5555 456678999999999


Q ss_pred             ecCCCCCccc-cccCCCCCCcEEEEecCC
Q 044597          289 NPCAHLKRIP-EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       289 ~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  316 (341)
                      ++|. +..+| ..+.++++|+.|++++|+
T Consensus       502 ~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          502 ASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence            9997 66665 457889999999999966

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.72  E-value=7.7e-18  Score=161.65  Aligned_cols=149  Identities=19%  Similarity=0.240  Sum_probs=95.8

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      .++++|+++ +.+..++...|+++++|++|++++|.+..+| ..++.+++|++|+++++.+.          ...+.. +
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~-~   94 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS----------SLSSSW-F   94 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC----------SCCHHH-H
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC----------ccCHHH-h
Confidence            689999998 5788875444499999999999999988886 67999999999999994443          120233 6


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL  231 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l  231 (341)
                      +++++|++|+++++..... ..+..++.+++|+.|++++|.    .++.+|  .+..+ ++|++|++++|.+.......+
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVE----TFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESS----SCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTT
T ss_pred             ccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCc----cccccCHhhhhcc-cccCeeeccCCcccccChhhh
Confidence            6666666666666531110 123345666666666666652    245554  45556 666666666666544333444


Q ss_pred             cCCCCCCeEE
Q 044597          232 EKLPVLQVLK  241 (341)
Q Consensus       232 ~~l~~L~~L~  241 (341)
                      +.+++|++|+
T Consensus       169 ~~l~~L~~L~  178 (549)
T 2z81_A          169 KSIRDIHHLT  178 (549)
T ss_dssp             TTCSEEEEEE
T ss_pred             hccccCceEe
Confidence            4443333333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=2.1e-18  Score=154.36  Aligned_cols=211  Identities=17%  Similarity=0.135  Sum_probs=166.3

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      ..+...++. +.+...+..+|..+++|++|++++|.+..++ ..+..+++|++|+++++.+..            ... +
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~-~   76 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-L   76 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------EEE-E
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------chh-h
Confidence            345666665 4777777778788899999999999988876 689999999999999854421            344 8


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEK  233 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  233 (341)
                      +.+++|++|++++|.   ...    +...++|+.|++++|     .+..++ ...+ ++|++|++++|.++......++.
T Consensus        77 ~~l~~L~~L~Ls~n~---l~~----l~~~~~L~~L~l~~n-----~l~~~~-~~~~-~~L~~L~l~~N~l~~~~~~~~~~  142 (317)
T 3o53_A           77 ESLSTLRTLDLNNNY---VQE----LLVGPSIETLHAANN-----NISRVS-CSRG-QGKKNIYLANNKITMLRDLDEGC  142 (317)
T ss_dssp             TTCTTCCEEECCSSE---EEE----EEECTTCCEEECCSS-----CCSEEE-ECCC-SSCEEEECCSSCCCSGGGBCTGG
T ss_pred             hhcCCCCEEECcCCc---ccc----ccCCCCcCEEECCCC-----ccCCcC-cccc-CCCCEEECCCCCCCCccchhhhc
Confidence            899999999999985   222    234589999999998     777776 1236 89999999999987666667889


Q ss_pred             CCCCCeEEEEEeC-cEeee-c-CCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEE
Q 044597          234 LPVLQVLKLKYLG-RKLAC-S-SDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKL  310 (341)
Q Consensus       234 l~~L~~L~l~~~~-~~~~~-~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  310 (341)
                      +++|++|+++.+. ..... . ...+++|++|+++++ .+..++.. ..+++|++|++++|. ++.+|..+..+++|++|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L  219 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWI  219 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCCc-CCcchhhhcccCcccEE
Confidence            9999999993332 22221 1 235799999999984 57777543 358999999999998 88888888899999999


Q ss_pred             EEecCC
Q 044597          311 ELWWPE  316 (341)
Q Consensus       311 ~l~~~~  316 (341)
                      ++++|.
T Consensus       220 ~L~~N~  225 (317)
T 3o53_A          220 SLRNNK  225 (317)
T ss_dssp             ECTTSC
T ss_pred             ECcCCc
Confidence            999997

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=9.1e-19  Score=156.31  Aligned_cols=216  Identities=20%  Similarity=0.207  Sum_probs=118.7

Q ss_pred             CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccc--ccchhhc-------ccccCceeeecCcCCCCCCceEE
Q 044597           73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYID--HTADEFW-------KMSKLRYLNFGAITLPAHPGKYS  142 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~--~lp~~i~-------~L~~L~~L~l~~~~lp~~i~~~~  142 (341)
                      ....+|+.+++. +.+ .+|..+ ...  |++|++++|.+.  .+|..+.       .+++|++|+++++.+.       
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~-~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------  108 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQF-TDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT-------  108 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHH-HHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-------
T ss_pred             ccCCCceeEeeccccc-ccHHHH-HHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-------
Confidence            344556666665 345 667666 333  667777777553  3455554       5677777777662221       


Q ss_pred             eCCCcchhhhh--CCCCCCceEEEEeecchhhhHHHHHhcCC-----CCCCEEEEEeCCCCCCCCccCc--ccccccCCc
Q 044597          143 LHPCCSTEEIL--GRLPNLQNLRIWGDLSYYQSLLSKSLCRL-----SCLESLKLANESKMPRRSNTIL--AEYQFPPSL  213 (341)
Q Consensus       143 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l~~l-----~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L  213 (341)
                        +.. +.. +  +.+++|++|+++++....   .|..++.+     ++|++|++++|     .+..++  .+..+ ++|
T Consensus       109 --~~~-~~~-~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~~~~~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L  175 (312)
T 1wwl_A          109 --GTA-PPP-LLEATGPDLNILNLRNVSWAT---RDAWLAELQQWLKPGLKVLSIAQA-----HSLNFSCEQVRVF-PAL  175 (312)
T ss_dssp             --SCC-CCC-SSSCCSCCCSEEEEESCBCSS---SSSHHHHHHTTCCTTCCEEEEESC-----SCCCCCTTTCCCC-SSC
T ss_pred             --chh-HHH-HHHhcCCCccEEEccCCCCcc---hhHHHHHHHHhhcCCCcEEEeeCC-----CCccchHHHhccC-CCC
Confidence              122 222 3  667777777777664221   12333333     67777777766     555554  55666 677


Q ss_pred             cEEEEEeecCCCC--CCccC--cCCCCCCeEEEEEeCcE-ee----ecCCCCCcccEEEEecCCCCCcee--ecCCCCCc
Q 044597          214 THLSFSNIELIDD--PMPAL--EKLPVLQVLKLKYLGRK-LA----CSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPK  282 (341)
Q Consensus       214 ~~L~l~~~~l~~~--~~~~l--~~l~~L~~L~l~~~~~~-~~----~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~  282 (341)
                      ++|++++|.+...  .++.+  +.+++|++|+++.+... ..    .....+++|++|+++++ .+...+  .....+++
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTT
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCC
Confidence            7777777764321  11222  56677777777222211 00    01124567777777763 343322  12233567


Q ss_pred             ccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          283 LECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       283 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      |++|++++|. ++.+|..+.  ++|++|++++|.
T Consensus       255 L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          255 LNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR  285 (312)
T ss_dssp             CCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC
T ss_pred             CCEEECCCCc-cChhhhhcc--CCceEEECCCCC
Confidence            7777777776 556666554  667777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.71  E-value=1.1e-17  Score=164.63  Aligned_cols=61  Identities=15%  Similarity=0.166  Sum_probs=45.3

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA  131 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~  131 (341)
                      .+.++++|++|+++ +.+..++...|+++++|++|++++|.+..+|. .++++++|++|++++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~  106 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS  106 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence            46677788888887 46666654444888888888888887777776 477888888888877

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.71  E-value=3.6e-17  Score=161.02  Aligned_cols=238  Identities=18%  Similarity=0.146  Sum_probs=146.1

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCC----CCC-----
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLP----AHP-----  138 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp----~~i-----  138 (341)
                      ..+.++++|++|+++ +.+..+|...|+++++|++|++++|.+..+| ..++++++|++|+++++.+.    ..+     
T Consensus        67 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  146 (680)
T 1ziw_A           67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN  146 (680)
T ss_dssp             THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred             HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence            346678899999998 5888999865599999999999999888886 57899999999999983332    111     


Q ss_pred             -ceEEeCCC----cchhhhhC--CCCCCceEEEEeecchhhhHHHHHhcC---------------------------CCC
Q 044597          139 -GKYSLHPC----CSTEEILG--RLPNLQNLRIWGDLSYYQSLLSKSLCR---------------------------LSC  184 (341)
Q Consensus       139 -~~~~~~~~----~~~~~~l~--~l~~L~~L~l~~~~~~~~~~l~~~l~~---------------------------l~~  184 (341)
                       +.+.++++    . ++..++  .+++|++|+++++....  ..+..+..                           .++
T Consensus       147 L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~  223 (680)
T 1ziw_A          147 LQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQIKE--FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS  223 (680)
T ss_dssp             CCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCC--BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSC
T ss_pred             CCEEEccCCccccc-CHHHhhccccccccEEECCCCcccc--cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcc
Confidence             33333321    1 111011  23445555554442110  00111111                           134


Q ss_pred             CCEEEEEeCCCCCCCCccC-c-cccccc-CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcc
Q 044597          185 LESLKLANESKMPRRSNTI-L-AEYQFP-PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKL  259 (341)
Q Consensus       185 L~~L~l~~~~e~~~~l~~l-p-~~~~lp-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L  259 (341)
                      |+.|+++++     .+... | ++..++ ++|+.|++++|.+.......++.+++|++|++..+.  ...+.....+++|
T Consensus       224 L~~L~L~~n-----~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  298 (680)
T 1ziw_A          224 IRNLSLSNS-----QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV  298 (680)
T ss_dssp             CCEEECTTS-----CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred             ccEEEccCC-----cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence            444444444     33333 3 555551 238888888888766566678888888888883322  1222345678888


Q ss_pred             cEEEEecCCCCC-----ceee----cCCCCCcccEEEEecCCCCCcc-ccccCCCCCCcEEEEecCC
Q 044597          260 KVLHLKSMLWLE-----EWTM----GIKAMPKLECVIINPCAHLKRI-PEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       260 ~~L~l~~~~~l~-----~~~~----~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~  316 (341)
                      ++|++.++..-.     .++.    ..+.+++|++|++.+|. +..+ |..+.++++|++|++++|.
T Consensus       299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCc
Confidence            888887532111     2221    34568889999998887 4544 4456778888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=8.6e-18  Score=147.21  Aligned_cols=180  Identities=19%  Similarity=0.156  Sum_probs=132.2

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      .+..+.+|++|+++ +.+..++...|+++++|++|++++|.+..++ ..+.++++|++|+++++.+.          ...
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~  116 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA----------SLE  116 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC----------CST
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc----------ccC
Confidence            67889999999998 5788888765599999999999999988876 57899999999999984443          120


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCcc----EEEEEeec
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLT----HLSFSNIE  222 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~----~L~l~~~~  222 (341)
                      ... ++.+++|++|+++++.... ..+|..+..+++|+.|++++|     .++.++  .+..+ .+|+    .|++++|.
T Consensus       117 ~~~-~~~l~~L~~L~l~~n~l~~-~~l~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          117 NFP-IGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-----KIQSIYCTDLRVL-HQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TCC-CTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSS-----CCCEECGGGGHHH-HTCTTCCEEEECCSSC
T ss_pred             chh-cccCCCCCEEECcCCccce-ecCchhhccCCCCCEEECCCC-----CCCcCCHHHhhhh-hhccccceeeecCCCc
Confidence            224 8899999999999985221 125678899999999999998     777775  56666 5666    78888887


Q ss_pred             CCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597          223 LIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA  292 (341)
Q Consensus       223 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  292 (341)
                      +...+...+                       ...+|++|+++++ .++.++.. ...+++|+.|++.+|+
T Consensus       189 l~~~~~~~~-----------------------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          189 MNFIQPGAF-----------------------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCEECTTSS-----------------------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             ccccCcccc-----------------------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence            643222211                       1225666666653 35555543 2467888888888877

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=1.2e-17  Score=146.14  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=154.5

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      ....+.+++.|++. +.+..++ .+ +.+++|++|++++|.+..++ .+..+++|++|+++++.+.          .. +
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~-~l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~----------~~-~  101 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQ-GI-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ----------SL-P  101 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCT-TG-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC----------CC-C
T ss_pred             ccccccceeeeeeCCCCccccc-cc-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC----------cc-C
Confidence            44567788888887 4677666 46 89999999999999888875 7889999999999984443          22 2


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCC
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDD  226 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~  226 (341)
                      +..++.+++|++|++++|.   ...++ ..++.+++|+.|++++|     .++.+|  .+..+ ++|+.|++++|.++..
T Consensus       102 ~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQ---LQSLPDGVFDKLTNLTYLNLAHN-----QLQSLPKGVFDKL-TNLTELDLSYNQLQSL  172 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCC
T ss_pred             hhHhcCCcCCCEEECCCCc---CCccCHHHhccCCCCCEEECCCC-----ccCccCHHHhccC-ccCCEEECCCCCcCcc
Confidence            2227889999999999885   33333 34788999999999988     788877  56788 8999999999998766


Q ss_pred             CCccCcCCCCCCeEEEEEeC-cEeee-cCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCC
Q 044597          227 PMPALEKLPVLQVLKLKYLG-RKLAC-SSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCL  304 (341)
Q Consensus       227 ~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l  304 (341)
                      +...++.+++|++|+++.+. ..... ....+++|++|++++++ +      .+.+|+|+.|.+..+..-+.+|.+++.+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~------~~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W------DCTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-B------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC-c------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence            66668889999999993332 22222 24568899999998853 1      1457888888888887666788777765


Q ss_pred             CC
Q 044597          305 KS  306 (341)
Q Consensus       305 ~~  306 (341)
                      +.
T Consensus       246 ~~  247 (272)
T 3rfs_A          246 AP  247 (272)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=161.27  Aligned_cols=222  Identities=18%  Similarity=0.138  Sum_probs=140.0

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      .+..+++|++|+++ +.+..+|...|+++++|++|++++|.+..+| ..++.+++|++|+++++.+.          ...
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~l~  116 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA----------SLE  116 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC----------CST
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc----------cCC
Confidence            56677777777776 4677776555577777888888777776665 56777777888777763332          110


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCc----cEEEEEeec
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSL----THLSFSNIE  222 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L----~~L~l~~~~  222 (341)
                      ... ++++++|++|+++++.... -.+|..++++++|+.|+++++     .+..++  .+..+ .+|    ..+++++|.
T Consensus       117 ~~~-~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l-~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          117 NFP-IGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-----KIQSIYCTDLRVL-HQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TCS-CTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECTTS-----CCCEECGGGGHHH-HTCTTCCCEEECTTCC
T ss_pred             Ccc-ccccccccEEecCCCccce-ecChhhhcccCCCCEEeCcCC-----ccceecHHHccch-hccchhhhhcccCCCC
Confidence            113 7778888888888774111 024667778888888888877     666654  55666 666    778888887


Q ss_pred             CCCCCCccCcCCCCCCeEEEEEeCc-------------------------------------------------------
Q 044597          223 LIDDPMPALEKLPVLQVLKLKYLGR-------------------------------------------------------  247 (341)
Q Consensus       223 l~~~~~~~l~~l~~L~~L~l~~~~~-------------------------------------------------------  247 (341)
                      +.......+... +|+.|++..+..                                                       
T Consensus       189 l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          189 MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            655444444443 566665521100                                                       


Q ss_pred             -Ee----eecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          248 -KL----ACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       248 -~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                       ..    +.....+++|++|++.++ .+..++.....+ +|++|++.+|. +..+|.  ..+++|+.|++.+|.
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~--~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCB-CSSCCB--CBCSSCCEEEEESCB
T ss_pred             hhhhhhchhhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCc-ccccCc--ccccccCEEeCcCCc
Confidence             00    011223566777777764 345555555556 77788887776 556665  457778888887765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=5.6e-17  Score=163.44  Aligned_cols=158  Identities=16%  Similarity=0.123  Sum_probs=111.8

Q ss_pred             ccccCCcceeeeeccCC--CCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCC
Q 044597           69 SPIMDQEVRLRENSIIP--SLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHP  145 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~~--~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~  145 (341)
                      ...+..+++|++|+++.  .+..++...|+++++|++|+|++|.+..+ |..++++++|++|+++++.+..         
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~---------  111 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD---------  111 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS---------
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc---------
Confidence            45678889999999984  35677444349999999999999988776 7788999999999998843321         


Q ss_pred             Ccchh-hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccc-cCCccEEEEEee
Q 044597          146 CCSTE-EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQF-PPSLTHLSFSNI  221 (341)
Q Consensus       146 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~l-p~~L~~L~l~~~  221 (341)
                      .. +. ..++++++|++|++++|..... ..+..++++++|+.|++++|     .+... | .+..+ .++|+.|++++|
T Consensus       112 ~~-~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N-----~i~~~~~~~l~~l~~~~L~~L~L~~n  184 (844)
T 3j0a_A          112 AV-LKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSN-----QIFLVCEHELEPLQGKTLSFFSLAAN  184 (844)
T ss_dssp             CC-STTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGTCSSCCEEEEESS-----CCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred             cc-ccCccccccCCCCEEECCCCccccc-ccchhHhhCCCCCEEECCCC-----cCCeeCHHHcccccCCccceEECCCC
Confidence            11 11 1178899999999999852211 12246889999999999988     55554 3 45433 158999999999


Q ss_pred             cCCCCCCccCcCCCC------CCeEEE
Q 044597          222 ELIDDPMPALEKLPV------LQVLKL  242 (341)
Q Consensus       222 ~l~~~~~~~l~~l~~------L~~L~l  242 (341)
                      .+.......++.+++      |++|++
T Consensus       185 ~l~~~~~~~~~~~~~~~~~~~L~~L~L  211 (844)
T 3j0a_A          185 SLYSRVSVDWGKCMNPFRNMVLEILDV  211 (844)
T ss_dssp             BSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred             ccccccccchhhcCCccccCceeEEec
Confidence            876654444444443      666666

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=5.8e-17  Score=157.02  Aligned_cols=116  Identities=22%  Similarity=0.097  Sum_probs=85.3

Q ss_pred             CCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccE
Q 044597          182 LSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKV  261 (341)
Q Consensus       182 l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~  261 (341)
                      +++|+.|++++|     .++.+|.  .+ ++|+.|++++|.++..+  .  .+++|+.|+++++....  ....+++|++
T Consensus       180 ~~~L~~L~Ls~N-----~l~~l~~--~~-~~L~~L~L~~N~l~~l~--~--~~~~L~~L~Ls~N~L~~--lp~~l~~L~~  245 (622)
T 3g06_A          180 PSGLQELSVSDN-----QLASLPT--LP-SELYKLWAYNNRLTSLP--A--LPSGLKELIVSGNRLTS--LPVLPSELKE  245 (622)
T ss_dssp             CTTCCEEECCSS-----CCSCCCC--CC-TTCCEEECCSSCCSSCC--C--CCTTCCEEECCSSCCSC--CCCCCTTCCE
T ss_pred             CCCCcEEECCCC-----CCCCCCC--cc-chhhEEECcCCcccccC--C--CCCCCCEEEccCCccCc--CCCCCCcCcE
Confidence            466777777766     6666651  12 67777777777764322  1  34789999884333211  1256789999


Q ss_pred             EEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          262 LHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       262 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      |+++++ .+..++.   .+++|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus       246 L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          246 LMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             EECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred             EECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence            999984 6777775   57899999999997 88999999999999999999998

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=6.6e-17  Score=162.93  Aligned_cols=230  Identities=20%  Similarity=0.269  Sum_probs=159.1

Q ss_pred             ccccCCcceeeeeccC-CCCccc-ChhhhhcCCCccEEecCCccccc-cchh--hcccccCceeeecCcCCCCCCceEEe
Q 044597           69 SPIMDQEVRLRENSII-PSLKSL-PSSFLSSLLNLYTLEMPFSYIDH-TADE--FWKMSKLRYLNFGAITLPAHPGKYSL  143 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~~l-p~~if~~L~~L~~L~Ls~~~~~~-lp~~--i~~L~~L~~L~l~~~~lp~~i~~~~~  143 (341)
                      ...+.++++|++|+++ +.+..+ |..+ +++++|++|+|++|.+.. +|..  ++++++|++|+++++.+..       
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-------  137 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-------  137 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-------
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-------
Confidence            4568899999999998 578877 5555 999999999999998765 5655  8999999999999844321       


Q ss_pred             CCCcch-hhhhCCCCCCceEEEEeecchh-----hhHHH-------------------HHhcCCC------CCCEEEEEe
Q 044597          144 HPCCST-EEILGRLPNLQNLRIWGDLSYY-----QSLLS-------------------KSLCRLS------CLESLKLAN  192 (341)
Q Consensus       144 ~~~~~~-~~~l~~l~~L~~L~l~~~~~~~-----~~~l~-------------------~~l~~l~------~L~~L~l~~  192 (341)
                        .. + +. ++++++|++|+++++....     ...+.                   ..++.+.      .|+.|++++
T Consensus       138 --~~-~~~~-~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~  213 (844)
T 3j0a_A          138 --LY-LHPS-FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG  213 (844)
T ss_dssp             --CC-CCGG-GGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred             --cc-cchh-HhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCC
Confidence              11 2 34 8889999999998875211     11110                   0111111      256666655


Q ss_pred             CCCCCCCCccCc-c------------------------------------cccc-cCCccEEEEEeecCCCCCCccCcCC
Q 044597          193 ESKMPRRSNTIL-A------------------------------------EYQF-PPSLTHLSFSNIELIDDPMPALEKL  234 (341)
Q Consensus       193 ~~e~~~~l~~lp-~------------------------------------~~~l-p~~L~~L~l~~~~l~~~~~~~l~~l  234 (341)
                      |.    -....| .                                    +..+ +++|+.|++++|.+.......++.+
T Consensus       214 n~----l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l  289 (844)
T 3j0a_A          214 NG----WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL  289 (844)
T ss_dssp             CC----SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred             Cc----CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence            41    000111 0                                    1111 2578888888888766666678889


Q ss_pred             CCCCeEEEEEeCc-Ee-eecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCcccc-ccCCCCCCcEE
Q 044597          235 PVLQVLKLKYLGR-KL-ACSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNKL  310 (341)
Q Consensus       235 ~~L~~L~l~~~~~-~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L  310 (341)
                      ++|+.|+++.+.. .. ......+++|++|+++++ .+..+ +...+.+++|+.|++++|. +..++. .+.++++|++|
T Consensus       290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L  367 (844)
T 3j0a_A          290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTL  367 (844)
T ss_dssp             CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEE
T ss_pred             CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEE
Confidence            9999999944332 22 234567899999999985 45554 4556789999999999997 676654 57789999999


Q ss_pred             EEecCC
Q 044597          311 ELWWPE  316 (341)
Q Consensus       311 ~l~~~~  316 (341)
                      ++++|.
T Consensus       368 ~Ls~N~  373 (844)
T 3j0a_A          368 DLRDNA  373 (844)
T ss_dssp             EEETCC
T ss_pred             ECCCCC
Confidence            999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=4.8e-17  Score=142.05  Aligned_cols=171  Identities=23%  Similarity=0.257  Sum_probs=130.8

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhh-cccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEF-WKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i-~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      ..++.|+++ +.+..+|...|+++++|++|++++|.+..+|..+ ..+++|++|+++++.+.          .. ++..+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~----------~~-~~~~~  105 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ----------AL-PIGVF  105 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC----------CC-CTTTT
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC----------cC-CHhHc
Confidence            578999998 5888998765599999999999999999998764 88999999999984443          22 22227


Q ss_pred             CCCCCCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCcc
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      +.+++|++|+++++.   ...+ +..+..+++|+.|++++|     .++.+|  .+..+ ++|+.|++++|.++..+...
T Consensus       106 ~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~  176 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQ---LKSLPPRVFDSLTKLTYLSLGYN-----ELQSLPKGVFDKL-TSLKELRLYNNQLKRVPEGA  176 (270)
T ss_dssp             TTCSSCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTT
T ss_pred             ccccCCCEEECCCCc---cCeeCHHHhCcCcCCCEEECCCC-----cCCccCHhHccCC-cccceeEecCCcCcEeChhH
Confidence            899999999999985   2233 345789999999999998     888888  57889 99999999999987666666


Q ss_pred             CcCCCCCCeEEEEEeC-cEeee-cCCCCCcccEEEEec
Q 044597          231 LEKLPVLQVLKLKYLG-RKLAC-SSDGFPKLKVLHLKS  266 (341)
Q Consensus       231 l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~  266 (341)
                      +..+++|++|+++.+. ...+. ....+++|+.|++++
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            8888888888883322 11111 123455666666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=1.7e-17  Score=155.52  Aligned_cols=218  Identities=19%  Similarity=0.180  Sum_probs=135.1

Q ss_pred             ccccCCcceeeeeccC-CCCc-ccChhhhhcCCCc-------------cEEecCCccccccchhhcccccCceeeecC--
Q 044597           69 SPIMDQEVRLRENSII-PSLK-SLPSSFLSSLLNL-------------YTLEMPFSYIDHTADEFWKMSKLRYLNFGA--  131 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~-~lp~~if~~L~~L-------------~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~--  131 (341)
                      ++.++++++|++|+++ +.+. .+|.++ +++++|             ++|++++|.+..+|.   ..++|++|++++  
T Consensus        27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~---~~~~L~~L~l~~n~  102 (454)
T 1jl5_A           27 PVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE---LPPHLESLVASCNS  102 (454)
T ss_dssp             -------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS---CCTTCSEEECCSSC
T ss_pred             ChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC---CcCCCCEEEccCCc
Confidence            4456777777777776 3443 567766 766654             777777776666665   235677777776  


Q ss_pred             -cCCCCC---CceEEeCCCcchhhhhCCC-CCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-c
Q 044597          132 -ITLPAH---PGKYSLHPCCSTEEILGRL-PNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-A  205 (341)
Q Consensus       132 -~~lp~~---i~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~  205 (341)
                       ..+|..   ++.+.++++. +.. +..+ ++|++|+++++.   ...+| .++.+++|+.|++++|     .++.+| .
T Consensus       103 l~~lp~~~~~L~~L~l~~n~-l~~-l~~~~~~L~~L~L~~n~---l~~lp-~~~~l~~L~~L~l~~N-----~l~~lp~~  171 (454)
T 1jl5_A          103 LTELPELPQSLKSLLVDNNN-LKA-LSDLPPLLEYLGVSNNQ---LEKLP-ELQNSSFLKIIDVDNN-----SLKKLPDL  171 (454)
T ss_dssp             CSSCCCCCTTCCEEECCSSC-CSC-CCSCCTTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCSS-----CCSCCCCC
T ss_pred             CCccccccCCCcEEECCCCc-cCc-ccCCCCCCCEEECcCCC---CCCCc-ccCCCCCCCEEECCCC-----cCcccCCC
Confidence             334432   2666666655 444 5444 588888888885   33455 5888899999999888     777777 3


Q ss_pred             cccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccE
Q 044597          206 EYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLEC  285 (341)
Q Consensus       206 ~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  285 (341)
                         . .+|++|++++|.++.  ++.++.+++|++|+++.+...  ......++|++|+++++ .+..++ ..+.+++|++
T Consensus       172 ---~-~~L~~L~L~~n~l~~--l~~~~~l~~L~~L~l~~N~l~--~l~~~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~  241 (454)
T 1jl5_A          172 ---P-PSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK--KLPDLPLSLESIVAGNN-ILEELP-ELQNLPFLTT  241 (454)
T ss_dssp             ---C-TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS--SCCCCCTTCCEEECCSS-CCSSCC-CCTTCTTCCE
T ss_pred             ---c-ccccEEECcCCcCCc--CccccCCCCCCEEECCCCcCC--cCCCCcCcccEEECcCC-cCCccc-ccCCCCCCCE
Confidence               2 688889998888754  446888888888888332211  11123357777777764 455555 3556677777


Q ss_pred             EEEecCCCCCccccccCCCCCCcEEEEecC
Q 044597          286 VIINPCAHLKRIPEQLWCLKSLNKLELWWP  315 (341)
Q Consensus       286 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  315 (341)
                      |++++|. +..+|..   +++|++|++++|
T Consensus       242 L~l~~N~-l~~l~~~---~~~L~~L~l~~N  267 (454)
T 1jl5_A          242 IYADNNL-LKTLPDL---PPSLEALNVRDN  267 (454)
T ss_dssp             EECCSSC-CSSCCSC---CTTCCEEECCSS
T ss_pred             EECCCCc-CCccccc---ccccCEEECCCC
Confidence            7777665 5555532   244555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=2.3e-17  Score=141.41  Aligned_cols=194  Identities=16%  Similarity=0.188  Sum_probs=150.8

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcc-ccccch-hhcccccCceeeecC-cCCCCCCceEEeCCCcchhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSY-IDHTAD-EFWKMSKLRYLNFGA-ITLPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~-~~~lp~-~i~~L~~L~~L~l~~-~~lp~~i~~~~~~~~~~~~~  151 (341)
                      ..+++|+++ +.++.+|...|+++++|++|++++|. +..+|. .+..+++|++|++++ +.+.          .. ++.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~----------~i-~~~   99 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT----------YI-DPD   99 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC----------EE-CTT
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee----------Ec-CHH
Confidence            378899998 68999998666999999999999996 999876 689999999999986 5553          22 222


Q ss_pred             hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCC---EEEEEeCCCCCCCCccCc--ccccccCCcc-EEEEEeecCCC
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLE---SLKLANESKMPRRSNTIL--AEYQFPPSLT-HLSFSNIELID  225 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~---~L~l~~~~e~~~~l~~lp--~~~~lp~~L~-~L~l~~~~l~~  225 (341)
                      .++.+++|++|+++++.   ...+|. +..+++|+   .|++++|.    .++.+|  .+..+ ++|+ .|++++|.++.
T Consensus       100 ~f~~l~~L~~L~l~~n~---l~~lp~-~~~l~~L~~L~~L~l~~N~----~l~~i~~~~~~~l-~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTG---LKMFPD-LTKVYSTDIFFILEITDNP----YMTSIPVNAFQGL-CNETLTLKLYNNGFTS  170 (239)
T ss_dssp             SEECCTTCCEEEEEEEC---CCSCCC-CTTCCBCCSEEEEEEESCT----TCCEECTTTTTTT-BSSEEEEECCSCCCCE
T ss_pred             HhCCCCCCCEEeCCCCC---Cccccc-cccccccccccEEECCCCc----chhhcCcccccch-hcceeEEEcCCCCCcc
Confidence            28899999999999995   334554 77888888   99999986    677777  57889 9999 99999999864


Q ss_pred             CCCccCcCCCCCCeEEEEEe--CcEee-ecCCCC-CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCC
Q 044597          226 DPMPALEKLPVLQVLKLKYL--GRKLA-CSSDGF-PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAH  293 (341)
Q Consensus       226 ~~~~~l~~l~~L~~L~l~~~--~~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~  293 (341)
                      .+...+.. ++|+.|++..+  -..++ .....+ ++|++|++++ +.+..++..  .+++|+.|.+.++..
T Consensus       171 i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          171 VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence            44444555 89999999333  23332 234567 8999999998 567777755  799999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=2.1e-16  Score=153.87  Aligned_cols=98  Identities=19%  Similarity=0.139  Sum_probs=75.1

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC---cCCCCCC------
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA---ITLPAHP------  138 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~---~~lp~~i------  138 (341)
                      ..+..+++|++|+++ +.+..+|+..|++|++|++|+|++|.+..+|. .|.+|++|++|++++   ..+|+..      
T Consensus        70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  149 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence            467888999999998 58888988766999999999999999998875 478999999999988   4444432      


Q ss_pred             -ceEEeCCCc----c-hhhhhCCCCCCceEEEEeec
Q 044597          139 -GKYSLHPCC----S-TEEILGRLPNLQNLRIWGDL  168 (341)
Q Consensus       139 -~~~~~~~~~----~-~~~~l~~l~~L~~L~l~~~~  168 (341)
                       +.+.++++.    . +.. ++.+++|++|+++++.
T Consensus       150 L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             cCeeccccCccccCCCchh-hccchhhhhhcccCcc
Confidence             666665421    0 233 6788889999887764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=5.6e-17  Score=153.46  Aligned_cols=198  Identities=17%  Similarity=0.132  Sum_probs=155.9

Q ss_pred             cccChhhhhcCC----CccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceE
Q 044597           88 KSLPSSFLSSLL----NLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNL  162 (341)
Q Consensus        88 ~~lp~~if~~L~----~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L  162 (341)
                      ..+|..+ ..+.    +|++|+|++|.+..+| ..++.+++|++|+++++.+..            ... ++.+++|++|
T Consensus        20 ~~l~~~l-~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L   85 (487)
T 3oja_A           20 SSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-LESLSTLRTL   85 (487)
T ss_dssp             TTHHHHH-HTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE------------EEE-CTTCTTCCEE
T ss_pred             hhhHHHH-HHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC------------Ccc-cccCCCCCEE
Confidence            4556666 5554    8999999999988875 689999999999999854431            334 8899999999


Q ss_pred             EEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          163 RIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       163 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                      ++++|.   ...    +...++|+.|++++|     .+..++. ..+ ++|+.|++++|.++......++.+++|++|++
T Consensus        86 ~Ls~N~---l~~----l~~~~~L~~L~L~~N-----~l~~~~~-~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  151 (487)
T 3oja_A           86 DLNNNY---VQE----LLVGPSIETLHAANN-----NISRVSC-SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (487)
T ss_dssp             ECCSSE---EEE----EEECTTCCEEECCSS-----CCCCEEE-CCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred             EecCCc---CCC----CCCCCCcCEEECcCC-----cCCCCCc-ccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence            999985   322    234489999999998     7777761 246 89999999999987766667899999999999


Q ss_pred             EEeC-cE-eeecC-CCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          243 KYLG-RK-LACSS-DGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       243 ~~~~-~~-~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +.+. .. .+... ..+++|++|+++++ .+..++.. ..+++|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus       152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC
T ss_pred             CCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc
Confidence            3332 22 22222 25899999999985 47777543 359999999999998 88888889999999999999987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.64  E-value=5.9e-16  Score=145.12  Aligned_cols=218  Identities=20%  Similarity=0.130  Sum_probs=103.7

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCc---CC---CCCCceEEeC
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI---TL---PAHPGKYSLH  144 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~---~l---p~~i~~~~~~  144 (341)
                      +..+++|++|+++ +.+..+|..+    .+|++|++++|.+..+| +++.+++|++|+++++   .+   |..++.+.++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~  223 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG  223 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECc
Confidence            3444444444444 2444444322    24444555555444454 4566666666666662   22   2233555555


Q ss_pred             CCc--chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEee
Q 044597          145 PCC--STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNI  221 (341)
Q Consensus       145 ~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~  221 (341)
                      ++.  .+++ ++.+++|++|+++++.   ...+|.   .+++|+.|++++|     .+..+| +   . ++|+.|++++|
T Consensus       224 ~n~l~~lp~-~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N-----~l~~l~~~---~-~~L~~L~ls~N  287 (454)
T 1jl5_A          224 NNILEELPE-LQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDN-----YLTDLPEL---P-QSLTFLDVSEN  287 (454)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSS-----CCSCCCCC---C-TTCCEEECCSS
T ss_pred             CCcCCcccc-cCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCC-----cccccCcc---c-CcCCEEECcCC
Confidence            411  0334 5666777777776664   222221   2356666666665     555554 2   1 45556666555


Q ss_pred             cCCCCC--Cc-------------cCcCC-CCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccE
Q 044597          222 ELIDDP--MP-------------ALEKL-PVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLEC  285 (341)
Q Consensus       222 ~l~~~~--~~-------------~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  285 (341)
                      .++..+  ++             .+..+ ++|++|+++.+...  .....+++|++|+++++ .+..++.   .+++|++
T Consensus       288 ~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~--~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~  361 (454)
T 1jl5_A          288 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALPPRLERLIASFN-HLAEVPE---LPQNLKQ  361 (454)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCE
T ss_pred             ccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc--cccccCCcCCEEECCCC-ccccccc---hhhhccE
Confidence            543210  00             01122 35555555222111  11223567777777763 4555554   4678888


Q ss_pred             EEEecCCCCC--ccccccCCC-------------CCCcEEEEecCC
Q 044597          286 VIINPCAHLK--RIPEQLWCL-------------KSLNKLELWWPE  316 (341)
Q Consensus       286 L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~~~  316 (341)
                      |++++|+..+  .+|.+++++             ++|+.|++++|+
T Consensus       362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            8888887433  466666666             778888888776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=8.7e-16  Score=134.21  Aligned_cols=173  Identities=23%  Similarity=0.264  Sum_probs=121.4

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHH
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLL  175 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l  175 (341)
                      ..+++|+.|++++|.+..++ ++..+++|++|+++++.+..            ++. ++.+++|++|+++++.   ...+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~------------~~~-l~~l~~L~~L~L~~n~---l~~~  100 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD------------ISA-LKELTNLTYLILTGNQ---LQSL  100 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC------------CGG-GTTCTTCCEEECTTSC---CCCC
T ss_pred             ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC------------chh-hcCCCCCCEEECCCCc---cCcc
Confidence            78899999999999888876 58889999999999855532            455 8888899999988875   2233


Q ss_pred             H-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcE-eee
Q 044597          176 S-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRK-LAC  251 (341)
Q Consensus       176 ~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~  251 (341)
                      + ..++.+++|+.|++++|     .++.+|  .+..+ ++|++|++++|.++..+...++.+++|++|+++.+... ...
T Consensus       101 ~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          101 PNGVFDKLTNLKELVLVEN-----QLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CTTTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ChhHhcCCcCCCEEECCCC-----cCCccCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            3 33678888888888887     777776  46778 88888888888876555555777888888887333211 111


Q ss_pred             -cCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCC
Q 044597          252 -SSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCA  292 (341)
Q Consensus       252 -~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  292 (341)
                       ....+++|++|+++++ .+..++.. .+.+++|+.|++.+|+
T Consensus       175 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence             1245667777777663 34444432 3456667777776665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=2e-17  Score=148.94  Aligned_cols=199  Identities=17%  Similarity=0.121  Sum_probs=119.2

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccc--cchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      .+++.|++. +.+...+..+ .++++|++|++++|.+..  +|..+..+++|++|+++++.+.         +.. +.. 
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~---------~~~-~~~-  137 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS---------DPI-VNT-  137 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC---------HHH-HHH-
T ss_pred             ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC---------HHH-HHH-
Confidence            566777776 3555555556 667777777777776543  6666777777777777763332         123 444 


Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc--Cc-ccccccC-CccEEEEEeec--CCCC
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT--IL-AEYQFPP-SLTHLSFSNIE--LIDD  226 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~-~L~~L~l~~~~--l~~~  226 (341)
                      ++.+++|++|++++|..-....++..+..+++|+.|++++|.    .++.  ++ .+..+ + +|++|++++|.  ++..
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~l-~~~L~~L~l~~~~~~~~~~  212 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF----DFTEKHVQVAVAHV-SETITQLNLSGYRKNLQKS  212 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT----TCCHHHHHHHHHHS-CTTCCEEECCSCGGGSCHH
T ss_pred             HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC----CcChHHHHHHHHhc-ccCCCEEEeCCCcccCCHH
Confidence            777777777777776321222456666777777777777763    3433  44 55666 5 77777777773  3212


Q ss_pred             C-CccCcCCCCCCeEEEEEeC---cEeeecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecC
Q 044597          227 P-MPALEKLPVLQVLKLKYLG---RKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPC  291 (341)
Q Consensus       227 ~-~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c  291 (341)
                      . ...+..+++|++|+++.+.   .........+++|++|+++++..+.... ...+.+++|+.|++.+|
T Consensus       213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            2 2234567777777772222   1122233456777777777765332221 12345777777777777

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.7e-17  Score=149.32  Aligned_cols=217  Identities=17%  Similarity=0.206  Sum_probs=128.2

Q ss_pred             eeeeccCC-CCcccChhhhhcC--CCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCC-cchhhhh
Q 044597           78 LRENSIIP-SLKSLPSSFLSSL--LNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPC-CSTEEIL  153 (341)
Q Consensus        78 Lr~L~l~~-~~~~lp~~if~~L--~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~-~~~~~~l  153 (341)
                      ++.++++. .+.  |..+ +++  +++++|++++|.+...+..+..+++|++|+++++.         +.+. . +.. +
T Consensus        49 ~~~l~l~~~~~~--~~~~-~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~---------l~~~~~-~~~-~  114 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVT-GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV---------IEVSTL-HGI-L  114 (336)
T ss_dssp             SSEEECTTCBCC--HHHH-HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE---------ECHHHH-HHH-H
T ss_pred             heeeccccccCC--HHHH-HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC---------cCHHHH-HHH-H
Confidence            34555542 222  3333 666  77777777777766666666677777777777621         1112 2 333 6


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCcc--Cc-ccccccCCccEEEEEee-cCCCCC-C
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNT--IL-AEYQFPPSLTHLSFSNI-ELIDDP-M  228 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~-~l~~~~-~  228 (341)
                      +.+++|++|+++++.  .....+..++.+++|+.|++++|.    .++.  ++ .+..+ ++|++|++++| .++... .
T Consensus       115 ~~~~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~L~~~~----~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          115 SQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCS----GFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             TTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCB----SCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHH
T ss_pred             hhCCCCCEEeCcCcc--cCHHHHHHHhcCCCCCEEECCCCC----CCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHH
Confidence            777777777777764  334556667777777777777763    3442  45 45566 77777777777 553322 2


Q ss_pred             ccCcCCC-CCCeEEEEEeC-----cEeeecCCCCCcccEEEEecCCCCC-ceeecCCCCCcccEEEEecCCCCCcc-ccc
Q 044597          229 PALEKLP-VLQVLKLKYLG-----RKLACSSDGFPKLKVLHLKSMLWLE-EWTMGIKAMPKLECVIINPCAHLKRI-PEQ  300 (341)
Q Consensus       229 ~~l~~l~-~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~  300 (341)
                      ..+..++ +|++|+++.+.     ..+......+++|++|+++++..++ ..+...+.+++|++|++.+|..+... ...
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE  267 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence            3356677 77777773221     1112222356777777777765443 23334456677777777777633211 113


Q ss_pred             cCCCCCCcEEEEecC
Q 044597          301 LWCLKSLNKLELWWP  315 (341)
Q Consensus       301 l~~l~~L~~L~l~~~  315 (341)
                      +.++++|+.|++++|
T Consensus       268 l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          268 LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeccCc
Confidence            556777777777776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.61  E-value=3.1e-15  Score=144.96  Aligned_cols=205  Identities=20%  Similarity=0.090  Sum_probs=138.8

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCc---CCCC---CCceEEeCCCcc
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAI---TLPA---HPGKYSLHPCCS  148 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~---~lp~---~i~~~~~~~~~~  148 (341)
                      .+|++|+++ +.++.+|.    .+++|++|+|++|.+..+|.   .+++|++|+++++   .+|.   .++.+.++++. 
T Consensus        61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~-  132 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ-  132 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSC-
T ss_pred             CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCC-
Confidence            678888887 57888886    46888999999998888886   7788999998882   2332   22555555433 


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCC
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPM  228 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~  228 (341)
                      +...-..+++|++|++++|.   ...+|   ..+++|+.|++++|     .++.+|  ..+ ++|+.|++++|.++..+ 
T Consensus       133 l~~lp~~l~~L~~L~Ls~N~---l~~l~---~~~~~L~~L~L~~N-----~l~~l~--~~~-~~L~~L~Ls~N~l~~l~-  197 (622)
T 3g06_A          133 LTSLPVLPPGLQELSVSDNQ---LASLP---ALPSELCKLWAYNN-----QLTSLP--MLP-SGLQELSVSDNQLASLP-  197 (622)
T ss_dssp             CSCCCCCCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCSS-----CCSCCC--CCC-TTCCEEECCSSCCSCCC-
T ss_pred             CCcCCCCCCCCCEEECcCCc---CCCcC---CccCCCCEEECCCC-----CCCCCc--ccC-CCCcEEECCCCCCCCCC-
Confidence            22211224667777777664   22222   13456777777766     666666  234 77888888888764322 


Q ss_pred             ccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597          229 PALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN  308 (341)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  308 (341)
                       .  .+++|+.|++..+...  .....+++|++|+++++ .+..++   ..+++|+.|++++|. ++.+|.   .+++|+
T Consensus       198 -~--~~~~L~~L~L~~N~l~--~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~  264 (622)
T 3g06_A          198 -T--LPSELYKLWAYNNRLT--SLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLL  264 (622)
T ss_dssp             -C--CCTTCCEEECCSSCCS--SCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCC
T ss_pred             -C--ccchhhEEECcCCccc--ccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCc
Confidence             1  2467888877332211  11234688999999884 577766   457899999999996 888886   578999


Q ss_pred             EEEEecCC
Q 044597          309 KLELWWPE  316 (341)
Q Consensus       309 ~L~l~~~~  316 (341)
                      .|++++|.
T Consensus       265 ~L~Ls~N~  272 (622)
T 3g06_A          265 SLSVYRNQ  272 (622)
T ss_dssp             EEECCSSC
T ss_pred             EEeCCCCC
Confidence            99999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.61  E-value=2.2e-17  Score=151.62  Aligned_cols=229  Identities=15%  Similarity=0.137  Sum_probs=153.8

Q ss_pred             cccCCcceeeeeccCC-CCcc-----cChhhhhcCCCccEEecCCcccc----ccchhh-------cccccCceeeecCc
Q 044597           70 PIMDQEVRLRENSIIP-SLKS-----LPSSFLSSLLNLYTLEMPFSYID----HTADEF-------WKMSKLRYLNFGAI  132 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~~-~~~~-----lp~~if~~L~~L~~L~Ls~~~~~----~lp~~i-------~~L~~L~~L~l~~~  132 (341)
                      ..+..+++|+.|+++. .+..     ++..+ .++++|++|+|++|.+.    .+|..+       ..+++|++|+++++
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            3445567788888873 4443     33345 78899999999887544    334444       67889999999884


Q ss_pred             CCCCCCceEEeCC--CcchhhhhCCCCCCceEEEEeecchh--hhHHHHHhcCC---------CCCCEEEEEeCCCCCCC
Q 044597          133 TLPAHPGKYSLHP--CCSTEEILGRLPNLQNLRIWGDLSYY--QSLLSKSLCRL---------SCLESLKLANESKMPRR  199 (341)
Q Consensus       133 ~lp~~i~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l~~l---------~~L~~L~l~~~~e~~~~  199 (341)
                      .+..       .+  .. +.. +..+++|++|++++|....  ...++..+..+         ++|+.|++++|     .
T Consensus       105 ~l~~-------~~~~~l-~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-----~  170 (386)
T 2ca6_A          105 AFGP-------TAQEPL-IDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-----R  170 (386)
T ss_dssp             CCCT-------TTHHHH-HHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-----C
T ss_pred             cCCH-------HHHHHH-HHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-----C
Confidence            4331       00  12 334 7888999999999886321  23444455555         89999999887     5


Q ss_pred             Cc--cCc----ccccccCCccEEEEEeecCCCC----CCc-cCcCCCCCCeEEEEEeCc------EeeecCCCCCcccEE
Q 044597          200 SN--TIL----AEYQFPPSLTHLSFSNIELIDD----PMP-ALEKLPVLQVLKLKYLGR------KLACSSDGFPKLKVL  262 (341)
Q Consensus       200 l~--~lp----~~~~lp~~L~~L~l~~~~l~~~----~~~-~l~~l~~L~~L~l~~~~~------~~~~~~~~~~~L~~L  262 (341)
                      ++  .+|    .+..+ ++|++|++++|.++..    ..+ .+..+++|++|+++.+..      .++.....+++|++|
T Consensus       171 l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            54  344    23467 7899999999987422    233 677889999999843332      122334567889999


Q ss_pred             EEecCCCCCce-----eecC--CCCCcccEEEEecCCCCCc-----ccccc-CCCCCCcEEEEecCC
Q 044597          263 HLKSMLWLEEW-----TMGI--KAMPKLECVIINPCAHLKR-----IPEQL-WCLKSLNKLELWWPE  316 (341)
Q Consensus       263 ~l~~~~~l~~~-----~~~~--~~l~~L~~L~l~~c~~l~~-----lp~~l-~~l~~L~~L~l~~~~  316 (341)
                      +++++. +...     +...  +.+++|+.|++++|. ++.     +|..+ .++++|++|++++|+
T Consensus       250 ~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          250 GLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             ECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            998854 4433     2222  348899999999998 565     77777 558999999999876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=8.7e-16  Score=135.55  Aligned_cols=168  Identities=21%  Similarity=0.185  Sum_probs=124.4

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      ....+.+|+.|+++ +.+..+|. + +.+++|++|++++|.+..++. +..+++|++|+++++.+..            +
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------~  105 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD------------L  105 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------------G
T ss_pred             chhhcCcccEEEccCCCcccChh-H-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC------------C
Confidence            34567888999997 57778864 6 889999999999998888877 8899999999998855532            6


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCc
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      +. ++.+++|++|++++|....   + ..+..+++|+.|++++|     .++.++.+..+ ++|+.|++++|.++...  
T Consensus       106 ~~-l~~l~~L~~L~L~~n~i~~---~-~~l~~l~~L~~L~l~~n-----~l~~~~~l~~l-~~L~~L~L~~N~l~~~~--  172 (291)
T 1h6t_A          106 SS-LKDLKKLKSLSLEHNGISD---I-NGLVHLPQLESLYLGNN-----KITDITVLSRL-TKLDTLSLEDNQISDIV--  172 (291)
T ss_dssp             GG-GTTCTTCCEEECTTSCCCC---C-GGGGGCTTCCEEECCSS-----CCCCCGGGGGC-TTCSEEECCSSCCCCCG--
T ss_pred             hh-hccCCCCCEEECCCCcCCC---C-hhhcCCCCCCEEEccCC-----cCCcchhhccC-CCCCEEEccCCccccch--
Confidence            66 8888899999988885322   2 35778888888888887     67777766778 88888888888874432  


Q ss_pred             cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEec
Q 044597          230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKS  266 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  266 (341)
                      .+..+++|+.|+++.+..........+++|+.|++++
T Consensus       173 ~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          173 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (291)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence            3777888888888333322222345566777777766

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.60  E-value=1.5e-15  Score=134.07  Aligned_cols=143  Identities=22%  Similarity=0.266  Sum_probs=61.7

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE  150 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~  150 (341)
                      +..+.+|++|+++ +.+..++. + +++++|++|++++|.+..+|. +..+++|++|+++++.+..            ++
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~------------~~  128 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD------------IN  128 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC------------CG
T ss_pred             HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCC------------Ch
Confidence            3344444444444 34444443 3 444445555554444444432 4444444444444432221            22


Q ss_pred             hhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCcc
Q 044597          151 EILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       151 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      . ++.+++|+.|++++|...   .+ ..+..+++|+.|++++|     .+..++.+..+ ++|+.|++++|.++.  ++.
T Consensus       129 ~-l~~l~~L~~L~l~~n~l~---~~-~~l~~l~~L~~L~L~~N-----~l~~~~~l~~l-~~L~~L~L~~N~i~~--l~~  195 (291)
T 1h6t_A          129 G-LVHLPQLESLYLGNNKIT---DI-TVLSRLTKLDTLSLEDN-----QISDIVPLAGL-TKLQNLYLSKNHISD--LRA  195 (291)
T ss_dssp             G-GGGCTTCCEEECCSSCCC---CC-GGGGGCTTCSEEECCSS-----CCCCCGGGTTC-TTCCEEECCSSCCCB--CGG
T ss_pred             h-hcCCCCCCEEEccCCcCC---cc-hhhccCCCCCEEEccCC-----ccccchhhcCC-CccCEEECCCCcCCC--Chh
Confidence            2 444444444444444311   11 23444444444444444     34433323344 444444444444322  223


Q ss_pred             CcCCCCCCeEEE
Q 044597          231 LEKLPVLQVLKL  242 (341)
Q Consensus       231 l~~l~~L~~L~l  242 (341)
                      +..+++|+.|++
T Consensus       196 l~~l~~L~~L~l  207 (291)
T 1h6t_A          196 LAGLKNLDVLEL  207 (291)
T ss_dssp             GTTCTTCSEEEE
T ss_pred             hccCCCCCEEEC
Confidence            444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=1.1e-15  Score=138.63  Aligned_cols=216  Identities=17%  Similarity=0.107  Sum_probs=156.7

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccc-cccch-hhcccccCcee-eecCcCCCCCCceEEeCCCcchhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYI-DHTAD-EFWKMSKLRYL-NFGAITLPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~-~~lp~-~i~~L~~L~~L-~l~~~~lp~~i~~~~~~~~~~~~~  151 (341)
                      .+++.|+++ +.++.+|...|+++++|++|+|++|.+ +.+|. .|.++++++.+ .+.++.+-          .. +++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~----------~l-~~~   98 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL----------YI-NPE   98 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC----------EE-CTT
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc----------cc-Cch
Confidence            467888887 689999987779999999999999976 55664 46788887764 44332221          22 222


Q ss_pred             hhCCCCCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCC
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPM  228 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~  228 (341)
                      +++.+++|++|+++++.   ...++. .+....++..|++..+.    .+..+|  .+..++..++.|++++|.++..+.
T Consensus        99 ~f~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~l~~l~l~~~~----~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~  171 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTG---IKHLPDVHKIHSLQKVLLDIQDNI----NIHTIERNSFVGLSFESVILWLNKNGIQEIHN  171 (350)
T ss_dssp             SBCCCTTCCEEEEEEEC---CSSCCCCTTCCBSSCEEEEEESCT----TCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             hhhhccccccccccccc---cccCCchhhcccchhhhhhhcccc----ccccccccchhhcchhhhhhccccccccCCCh
Confidence            28999999999999985   222222 34455677888887755    777777  555553678999999999854443


Q ss_pred             ccCcCCCCCCeEEE-EEeC-cEeee-cCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCC
Q 044597          229 PALEKLPVLQVLKL-KYLG-RKLAC-SSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLK  305 (341)
Q Consensus       229 ~~l~~l~~L~~L~l-~~~~-~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~  305 (341)
                      . ....++|+.|.+ .++. ..++. ....+++|++|++++ +.++.+|..  .+.+|+.|.+.++.+++.+|. +.+++
T Consensus       172 ~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~  246 (350)
T 4ay9_X          172 S-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV  246 (350)
T ss_dssp             T-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred             h-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChh--hhccchHhhhccCCCcCcCCC-chhCc
Confidence            3 334567888888 2222 22332 246789999999998 468888754  688999999999999999995 78899


Q ss_pred             CCcEEEEec
Q 044597          306 SLNKLELWW  314 (341)
Q Consensus       306 ~L~~L~l~~  314 (341)
                      +|+.+++.+
T Consensus       247 ~L~~l~l~~  255 (350)
T 4ay9_X          247 ALMEASLTY  255 (350)
T ss_dssp             SCCEEECSC
T ss_pred             ChhhCcCCC
Confidence            999999975

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=5.7e-16  Score=138.00  Aligned_cols=200  Identities=17%  Similarity=0.110  Sum_probs=138.1

Q ss_pred             cCCCccEEecCCcccc-ccchhh--cccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhh
Q 044597           97 SLLNLYTLEMPFSYID-HTADEF--WKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQS  173 (341)
Q Consensus        97 ~L~~L~~L~Ls~~~~~-~lp~~i--~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  173 (341)
                      .+++|++|++++|.+. ..|..+  ..+++|++|+++++.+...      ........ +..+++|++|++++|.  ...
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~------~~~~~~~~-~~~~~~L~~L~Ls~n~--l~~  159 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG------RSWLAELQ-QWLKPGLKVLSIAQAH--SPA  159 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST------TSSHHHHH-TTBCSCCCEEEEECCS--SCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch------hhhhHHHH-hhhccCCCEEEeeCCC--cch
Confidence            4567999999999765 456666  8899999999988444310      00110122 5678899999999885  223


Q ss_pred             HHHHHhcCCCCCCEEEEEeCCCCCCCCcc---Cc---ccccccCCccEEEEEeecCCCCCCc---cCcCCCCCCeEEEEE
Q 044597          174 LLSKSLCRLSCLESLKLANESKMPRRSNT---IL---AEYQFPPSLTHLSFSNIELIDDPMP---ALEKLPVLQVLKLKY  244 (341)
Q Consensus       174 ~l~~~l~~l~~L~~L~l~~~~e~~~~l~~---lp---~~~~lp~~L~~L~l~~~~l~~~~~~---~l~~l~~L~~L~l~~  244 (341)
                      ..+..++.+++|+.|++++|     .+..   ++   ++..+ ++|++|++++|.++..+..   .++.+++|++|++++
T Consensus       160 ~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          160 FSCEQVRAFPALTSLDLSDN-----PGLGERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             CCTTSCCCCTTCCEEECCSC-----TTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             hhHHHhccCCCCCEEECCCC-----CCccchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence            33356788899999999887     4432   32   44678 8899999999987421111   246778999999933


Q ss_pred             eCcE-e-eecCCC---CCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          245 LGRK-L-ACSSDG---FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       245 ~~~~-~-~~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +... . +.....   +++|++|++++ +.++.+|...  +++|+.|++++|. +..+|. ...+++|+.|++++|+
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence            3211 1 222233   37999999988 4577776554  4899999999998 777775 6789999999999987

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=8.8e-15  Score=132.55  Aligned_cols=213  Identities=15%  Similarity=0.141  Sum_probs=155.3

Q ss_pred             eeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      .++.+ ++++++|..+   .+++++|+|++|.+..+|. .|.+|++|++|+|+++.+-.         .. +..++.+++
T Consensus        13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~---------~i-~~~~f~~L~   79 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---------VI-EADVFSNLP   79 (350)
T ss_dssp             EEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC---------EE-CTTSBCSCT
T ss_pred             EEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC---------cc-ChhHhhcch
Confidence            34444 5789999887   3689999999999999986 58999999999999844321         12 222278899


Q ss_pred             CCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeec-CCCCCCccCcC
Q 044597          158 NLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIE-LIDDPMPALEK  233 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~-l~~~~~~~l~~  233 (341)
                      +++++....+.  ....+ +..+..+++|+.|+++++     .+..+|  ..... .++..+++.++. +...+...+..
T Consensus        80 ~l~~~l~~~~N--~l~~l~~~~f~~l~~L~~L~l~~n-----~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~  151 (350)
T 4ay9_X           80 KLHEIRIEKAN--NLLYINPEAFQNLPNLQYLLISNT-----GIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVG  151 (350)
T ss_dssp             TCCEEEEEEET--TCCEECTTSBCCCTTCCEEEEEEE-----CCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTT
T ss_pred             hhhhhhcccCC--cccccCchhhhhcccccccccccc-----ccccCCchhhccc-chhhhhhhccccccccccccchhh
Confidence            98876554432  34444 356789999999999998     788887  44455 678888887754 44344445566


Q ss_pred             CC-CCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCccccccCCCCCCcEE
Q 044597          234 LP-VLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPEQLWCLKSLNKL  310 (341)
Q Consensus       234 l~-~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  310 (341)
                      ++ .++.|+++.+. ..+........+|++|.+.+++.++.++... ..+++|+.|++++|. ++.+|.+  .+.+|+.|
T Consensus       152 ~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L  228 (350)
T 4ay9_X          152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--GLENLKKL  228 (350)
T ss_dssp             SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--SCTTCCEE
T ss_pred             cchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--hhccchHh
Confidence            54 68889884433 3343334456789999999888899998653 679999999999997 8999864  36778888


Q ss_pred             EEecCC
Q 044597          311 ELWWPE  316 (341)
Q Consensus       311 ~l~~~~  316 (341)
                      .+.++.
T Consensus       229 ~~l~~~  234 (350)
T 4ay9_X          229 RARSTY  234 (350)
T ss_dssp             ECTTCT
T ss_pred             hhccCC
Confidence            877775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=4.5e-15  Score=123.24  Aligned_cols=147  Identities=17%  Similarity=0.147  Sum_probs=116.7

Q ss_pred             CCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597           73 DQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~  151 (341)
                      ..+.+|+.|+++ +.+..+| .+ ..+++|++|++++|.+..++ .+..+++|++|+++++.+..         .. +..
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~---------~~-~~~  107 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS---------DK-IPN  107 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG---------GG-SCC
T ss_pred             hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc---------cc-Chh
Confidence            567788899987 5888888 67 99999999999999777665 68889999999998844431         22 455


Q ss_pred             hhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccC
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPAL  231 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l  231 (341)
                       ++.+++|++|++++|.  .....+..++.+++|+.|++++|.    .++.+|.+..+ ++|+.|++++|.++.  ++.+
T Consensus       108 -l~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~L~L~~n~----~i~~~~~l~~l-~~L~~L~l~~n~i~~--~~~l  177 (197)
T 4ezg_A          108 -LSGLTSLTLLDISHSA--HDDSILTKINTLPKVNSIDLSYNG----AITDIMPLKTL-PELKSLNIQFDGVHD--YRGI  177 (197)
T ss_dssp             -CTTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCEEECCSCT----BCCCCGGGGGC-SSCCEEECTTBCCCC--CTTG
T ss_pred             -hcCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCEEEccCCC----CccccHhhcCC-CCCCEEECCCCCCcC--hHHh
Confidence             8889999999999886  333456778899999999999883    37788866788 899999999998754  3377


Q ss_pred             cCCCCCCeEEE
Q 044597          232 EKLPVLQVLKL  242 (341)
Q Consensus       232 ~~l~~L~~L~l  242 (341)
                      ..+++|+.|++
T Consensus       178 ~~l~~L~~L~l  188 (197)
T 4ezg_A          178 EDFPKLNQLYA  188 (197)
T ss_dssp             GGCSSCCEEEE
T ss_pred             ccCCCCCEEEe
Confidence            88888888888

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=4e-16  Score=139.00  Aligned_cols=197  Identities=19%  Similarity=0.232  Sum_probs=96.8

Q ss_pred             ceeeeeccC-CCCc-ccChhhh-hcCCCccEEecCCcccccc-c----hhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597           76 VRLRENSII-PSLK-SLPSSFL-SSLLNLYTLEMPFSYIDHT-A----DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC  147 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~-~lp~~if-~~L~~L~~L~Ls~~~~~~l-p----~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~  147 (341)
                      .+|++|+++ +.+. ..|..+| +++++|++|++++|.+... |    ..+..+++|++|+++++.+.          ..
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----------~~  160 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP----------AF  160 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC----------CC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc----------hh
Confidence            345666665 3443 2333333 5566666666666654431 1    23345666666666653332          11


Q ss_pred             chhhhhCCCCCCceEEEEeecchhhhHHHHH--hcCCCCCCEEEEEeCCCCCCCCccCc-c----cccccCCccEEEEEe
Q 044597          148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKS--LCRLSCLESLKLANESKMPRRSNTIL-A----EYQFPPSLTHLSFSN  220 (341)
Q Consensus       148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~--l~~l~~L~~L~l~~~~e~~~~l~~lp-~----~~~lp~~L~~L~l~~  220 (341)
                      .+.. ++.+++|++|++++|.......++..  ++.+++|+.|++++|     .++.+| .    +..+ ++|++|++++
T Consensus       161 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~l~~~~~~l~~~l-~~L~~L~Ls~  233 (310)
T 4glp_A          161 SCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-----GMETPTGVCAALAAAG-VQPHSLDLSH  233 (310)
T ss_dssp             CTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-----CCCCHHHHHHHHHHHT-CCCSSEECTT
T ss_pred             hHHH-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-----CCCchHHHHHHHHhcC-CCCCEEECCC
Confidence            0223 55666666666666542122223222  245666666666665     554443 1    2345 5666666666


Q ss_pred             ecCCCCCCccCcCC---CCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCC
Q 044597          221 IELIDDPMPALEKL---PVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCA  292 (341)
Q Consensus       221 ~~l~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~  292 (341)
                      |.+....++.++.+   ++|++|+++.+... .....-+++|++|++++ +.+..++. ...+++|+.|++++|+
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence            66544433333333   56666666322211 11112235666666665 33444433 3455666666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=3.3e-15  Score=144.48  Aligned_cols=169  Identities=21%  Similarity=0.182  Sum_probs=131.8

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      .+..+.+|+.|+++ +.+..+| .+ +.+++|++|+|++|.+..+|. +..+++|++|+|+++.+..            +
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------------l  102 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKSVQ-GI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD------------L  102 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCCCT-TG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC------------C
T ss_pred             chhcCCCCCEEECcCCCCCCCh-HH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC------------C
Confidence            35567889999998 5788887 47 999999999999999988886 9999999999999855532            5


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCc
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      +. ++.+++|+.|++++|...   .+ ..+..+++|+.|++++|     .+..++.+..+ ++|+.|+|++|.+....  
T Consensus       103 ~~-l~~l~~L~~L~Ls~N~l~---~l-~~l~~l~~L~~L~Ls~N-----~l~~l~~l~~l-~~L~~L~Ls~N~l~~~~--  169 (605)
T 1m9s_A          103 SS-LKDLKKLKSLSLEHNGIS---DI-NGLVHLPQLESLYLGNN-----KITDITVLSRL-TKLDTLSLEDNQISDIV--  169 (605)
T ss_dssp             TT-STTCTTCCEEECTTSCCC---CC-GGGGGCTTCSEEECCSS-----CCCCCGGGGSC-TTCSEEECCSSCCCCCG--
T ss_pred             hh-hccCCCCCEEEecCCCCC---CC-ccccCCCccCEEECCCC-----ccCCchhhccc-CCCCEEECcCCcCCCch--
Confidence            56 889999999999988633   23 35788999999999988     77777766788 89999999999875433  


Q ss_pred             cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecC
Q 044597          230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSM  267 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  267 (341)
                      .+..+++|+.|+|+.+..........+++|+.|+++++
T Consensus       170 ~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          170 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred             hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence            38888999999883333222234566788888888874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=6.5e-15  Score=142.39  Aligned_cols=146  Identities=22%  Similarity=0.250  Sum_probs=118.2

Q ss_pred             ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597           69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC  147 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~  147 (341)
                      .+.+..+.+|+.|+++ +.+..+|. + +.+++|++|+|++|.+..+| .+..+++|++|+|+++.+..           
T Consensus        58 l~~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-----------  123 (605)
T 1m9s_A           58 VQGIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISD-----------  123 (605)
T ss_dssp             CTTGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCC-----------
T ss_pred             ChHHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCC-----------
Confidence            3457778899999998 57888876 6 89999999999999888876 68899999999999855532           


Q ss_pred             chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCC
Q 044597          148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDP  227 (341)
Q Consensus       148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~  227 (341)
                       ++. +..+++|+.|++++|...   .+ ..+..+++|+.|++++|     .+..++.+..+ ++|+.|+|++|.++.  
T Consensus       124 -l~~-l~~l~~L~~L~Ls~N~l~---~l-~~l~~l~~L~~L~Ls~N-----~l~~~~~l~~l-~~L~~L~Ls~N~i~~--  189 (605)
T 1m9s_A          124 -ING-LVHLPQLESLYLGNNKIT---DI-TVLSRLTKLDTLSLEDN-----QISDIVPLAGL-TKLQNLYLSKNHISD--  189 (605)
T ss_dssp             -CGG-GGGCTTCSEEECCSSCCC---CC-GGGGSCTTCSEEECCSS-----CCCCCGGGTTC-TTCCEEECCSSCCCB--
T ss_pred             -Ccc-ccCCCccCEEECCCCccC---Cc-hhhcccCCCCEEECcCC-----cCCCchhhccC-CCCCEEECcCCCCCC--
Confidence             556 888999999999988533   33 56788999999999988     77776546678 899999999998744  


Q ss_pred             CccCcCCCCCCeEEE
Q 044597          228 MPALEKLPVLQVLKL  242 (341)
Q Consensus       228 ~~~l~~l~~L~~L~l  242 (341)
                      ++.+..+++|+.|++
T Consensus       190 l~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          190 LRALAGLKNLDVLEL  204 (605)
T ss_dssp             CGGGTTCTTCSEEEC
T ss_pred             ChHHccCCCCCEEEc
Confidence            467888999999998

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=1e-14  Score=125.74  Aligned_cols=141  Identities=24%  Similarity=0.306  Sum_probs=74.7

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL  156 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l  156 (341)
                      +.+++. ..+..+|..+ .  +++++|++++|.+..++. .+.++++|++|+++++.+.          ...+.. +..+
T Consensus        17 ~~l~~~~~~l~~~p~~~-~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~-~~~l   82 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGI-P--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ----------TLSAGV-FDDL   82 (251)
T ss_dssp             TEEECTTCCCSSCCSCC-C--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC----------CCCTTT-TTTC
T ss_pred             eEEecCCCCccccCCCC-C--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC----------ccCHhH-hccC
Confidence            344554 3556666555 3  456666666666555543 4566666666666653322          110222 5556


Q ss_pred             CCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcC
Q 044597          157 PNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEK  233 (341)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  233 (341)
                      ++|++|+++++.   ...++ ..+..+++|+.|++++|     .++.+|  .+..+ ++|+.|++++|.++..+...++.
T Consensus        83 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~  153 (251)
T 3m19_A           83 TELGTLGLANNQ---LASLPLGVFDHLTQLDKLYLGGN-----QLKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDK  153 (251)
T ss_dssp             TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCEEECCCCc---ccccChhHhcccCCCCEEEcCCC-----cCCCcChhHhccC-CcccEEECcCCcCCccCHHHcCc
Confidence            666666666553   12222 23455566666666665     555555  34555 56666666666654444444555


Q ss_pred             CCCCCeEEE
Q 044597          234 LPVLQVLKL  242 (341)
Q Consensus       234 l~~L~~L~l  242 (341)
                      +++|++|++
T Consensus       154 l~~L~~L~L  162 (251)
T 3m19_A          154 LTNLQTLSL  162 (251)
T ss_dssp             CTTCCEEEC
T ss_pred             CcCCCEEEC
Confidence            555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=5.4e-15  Score=122.75  Aligned_cols=150  Identities=19%  Similarity=0.239  Sum_probs=85.8

Q ss_pred             cccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCC
Q 044597          119 WKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPR  198 (341)
Q Consensus       119 ~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~  198 (341)
                      ..+++|++|+++++.+..            ++. +..+++|++|+++++..   ..+ ..+..+++|+.|++++|     
T Consensus        41 ~~l~~L~~L~l~~n~i~~------------l~~-l~~l~~L~~L~l~~n~~---~~~-~~l~~l~~L~~L~l~~n-----   98 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD------------LTG-IEYAHNIKDLTINNIHA---TNY-NPISGLSNLERLRIMGK-----   98 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC------------CTT-GGGCTTCSEEEEESCCC---SCC-GGGTTCTTCCEEEEECT-----
T ss_pred             hhcCCccEEeccCCCccC------------hHH-HhcCCCCCEEEccCCCC---Ccc-hhhhcCCCCCEEEeECC-----
Confidence            556666666666533321            233 55555666666655531   111 23445555555555554     


Q ss_pred             CCcc-Cc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec
Q 044597          199 RSNT-IL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG  276 (341)
Q Consensus       199 ~l~~-lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  276 (341)
                      .++. .| .+..+ ++|++|++++|.++...+..++                      .+++|++|+++++..+..++ .
T Consensus        99 ~l~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~----------------------~l~~L~~L~L~~n~~i~~~~-~  154 (197)
T 4ezg_A           99 DVTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKIN----------------------TLPKVNSIDLSYNGAITDIM-P  154 (197)
T ss_dssp             TCBGGGSCCCTTC-TTCCEEECCSSBCBGGGHHHHT----------------------TCSSCCEEECCSCTBCCCCG-G
T ss_pred             ccCcccChhhcCC-CCCCEEEecCCccCcHhHHHHh----------------------hCCCCCEEEccCCCCccccH-h
Confidence            3333 23 44445 5555555555554322233333                      45566666666544355554 4


Q ss_pred             CCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          277 IKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       277 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      .+.+++|+.|++++|. +..++ .+..+++|++|++++++
T Consensus       155 l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred             hcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence            5578889999999887 67776 67888999999999887

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=5.1e-16  Score=142.52  Aligned_cols=226  Identities=19%  Similarity=0.209  Sum_probs=162.4

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccc-----cchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDH-----TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~-----lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      ..+++..+. ..+..++..+ .++++|++|+|++|.+..     ++..+..+++|++|++++..+..      +.+.. +
T Consensus         9 ~~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~------l~~~~-~   80 (386)
T 2ca6_A            9 KSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR------VKDEI-P   80 (386)
T ss_dssp             CCCEESSCCSHHHHTTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS------CGGGS-H
T ss_pred             cccccCCCCHHHHHHHHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc------cccch-h
Confidence            455666555 3677888888 999999999999997654     44457789999999998721110      00011 2


Q ss_pred             hh------hhCCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccc----ccc-----
Q 044597          150 EE------ILGRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEY----QFP-----  210 (341)
Q Consensus       150 ~~------~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~----~lp-----  210 (341)
                      ..      ++..+++|++|++++|...  ....++..+..+++|+.|++++|     .++...  .+.    .+.     
T Consensus        81 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-----~l~~~~~~~l~~~l~~l~~~~~~  155 (386)
T 2ca6_A           81 EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-----GLGPQAGAKIARALQELAVNKKA  155 (386)
T ss_dssp             HHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-----CCCHHHHHHHHHHHHHHhhhhhc
Confidence            22      2589999999999998622  23468888999999999999998     555322  221    110     


Q ss_pred             ---CCccEEEEEeecCCCCCCc----cCcCCCCCCeEEEEEeCcE------eee-cCCCCCcccEEEEecCCCC-----C
Q 044597          211 ---PSLTHLSFSNIELIDDPMP----ALEKLPVLQVLKLKYLGRK------LAC-SSDGFPKLKVLHLKSMLWL-----E  271 (341)
Q Consensus       211 ---~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~------~~~-~~~~~~~L~~L~l~~~~~l-----~  271 (341)
                         ++|++|++++|.++...++    .+..+++|++|+++.+...      ... ....+++|++|+++++. +     .
T Consensus       156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~  234 (386)
T 2ca6_A          156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSS  234 (386)
T ss_dssp             HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHH
T ss_pred             ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHH
Confidence               5899999999998644444    4667899999999444322      112 44578999999999865 5     4


Q ss_pred             ceeecCCCCCcccEEEEecCCCCCc-----ccccc--CCCCCCcEEEEecCC
Q 044597          272 EWTMGIKAMPKLECVIINPCAHLKR-----IPEQL--WCLKSLNKLELWWPE  316 (341)
Q Consensus       272 ~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l--~~l~~L~~L~l~~~~  316 (341)
                      .++.....+++|+.|++++|. ++.     +|..+  +++++|++|++++|.
T Consensus       235 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          235 ALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            455556678999999999998 554     45666  448999999999987

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=1.8e-14  Score=124.31  Aligned_cols=123  Identities=17%  Similarity=0.157  Sum_probs=87.1

Q ss_pred             CCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHH
Q 044597           99 LNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKS  178 (341)
Q Consensus        99 ~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~  178 (341)
                      ...++++++++.+..+|..+.  ++++.|+++++.+..         .. +.. ++++++|++|+++++...  ...+..
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~---------~~-~~~-~~~l~~L~~L~L~~n~l~--~~~~~~   78 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLAT---------LS-DAT-FRGLTKLTWLNLDYNQLQ--TLSAGV   78 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCC---------CC-TTT-TTTCTTCCEEECTTSCCC--CCCTTT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCc---------cC-HhH-hcCcccCCEEECCCCcCC--ccCHhH
Confidence            346789999999999998765  689999999844431         11 334 788888888888887521  222334


Q ss_pred             hcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          179 LCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       179 l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                      +..+++|+.|+++++     .++.+|  .+..+ ++|++|++++|.++..+...++.+++|++|++
T Consensus        79 ~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           79 FDDLTELGTLGLANN-----QLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             TTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             hccCCcCCEEECCCC-----cccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence            677888888888877     677766  56677 78888888888776555445666666666666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.51  E-value=2.9e-16  Score=143.00  Aligned_cols=228  Identities=14%  Similarity=0.119  Sum_probs=153.3

Q ss_pred             CCcceeeeeccC-CCCcccCh----hhhhcCC-CccEEecCCcccccc-chhhccc-----ccCceeeecCcCCCCCCce
Q 044597           73 DQEVRLRENSII-PSLKSLPS----SFLSSLL-NLYTLEMPFSYIDHT-ADEFWKM-----SKLRYLNFGAITLPAHPGK  140 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~~~lp~----~if~~L~-~L~~L~Ls~~~~~~l-p~~i~~L-----~~L~~L~l~~~~lp~~i~~  140 (341)
                      ....+|++|+++ +.+...+.    ..|.+++ +|++|+|++|.+... +..+..+     ++|++|+++++.+..    
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----   94 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY----   94 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG----
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh----
Confidence            334558999998 57887774    4448898 899999999987765 5566665     899999999843321    


Q ss_pred             EEeCCCcchhh---hhCCC-CCCceEEEEeecch--hhhHHHHHhcCC-CCCCEEEEEeCCCCCCCCc-----cCc-ccc
Q 044597          141 YSLHPCCSTEE---ILGRL-PNLQNLRIWGDLSY--YQSLLSKSLCRL-SCLESLKLANESKMPRRSN-----TIL-AEY  207 (341)
Q Consensus       141 ~~~~~~~~~~~---~l~~l-~~L~~L~l~~~~~~--~~~~l~~~l~~l-~~L~~L~l~~~~e~~~~l~-----~lp-~~~  207 (341)
                           .. +..   .+..+ ++|++|++++|...  ....+...+..+ ++|+.|++++|     .++     .++ .+.
T Consensus        95 -----~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-----~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           95 -----KS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-----DLGIKSSDELIQILA  163 (362)
T ss_dssp             -----SC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-----CGGGSCHHHHHHHHH
T ss_pred             -----HH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-----cCCHHHHHHHHHHHh
Confidence                 11 221   24455 89999999988732  234454556664 69999999987     565     334 445


Q ss_pred             cccCCccEEEEEeecCCCCCCcc----CcCC-CCCCeEEEEEeCcEe------eecCCC-CCcccEEEEecCCCCCceee
Q 044597          208 QFPPSLTHLSFSNIELIDDPMPA----LEKL-PVLQVLKLKYLGRKL------ACSSDG-FPKLKVLHLKSMLWLEEWTM  275 (341)
Q Consensus       208 ~lp~~L~~L~l~~~~l~~~~~~~----l~~l-~~L~~L~l~~~~~~~------~~~~~~-~~~L~~L~l~~~~~l~~~~~  275 (341)
                      .+|++|++|++++|.++......    +... ++|++|+++.+....      ...... .++|++|+++++ .+.....
T Consensus       164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~  242 (362)
T 3goz_A          164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSL  242 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCH
T ss_pred             cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHH
Confidence            56348999999999876555433    3345 599999993332111      111112 458999999984 4554432


Q ss_pred             -----cCCCCCcccEEEEecCC-------CCCccccccCCCCCCcEEEEecCC
Q 044597          276 -----GIKAMPKLECVIINPCA-------HLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       276 -----~~~~l~~L~~L~l~~c~-------~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                           ....+++|+.|++++|.       .+..++..+.++++|++|++++++
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                 23568899999999997       122244456778889999998876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=2.2e-14  Score=120.09  Aligned_cols=135  Identities=18%  Similarity=0.256  Sum_probs=82.2

Q ss_pred             CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEE
Q 044597           85 PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLR  163 (341)
Q Consensus        85 ~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~  163 (341)
                      ..+..+|..+   .++|++|++++|.+..+|.. +..+++|++|+++++.+.          .. ++..++.+++|++|+
T Consensus        17 ~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~-~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A           17 QGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ----------SL-PNGVFNKLTSLTYLN   82 (208)
T ss_dssp             SCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----------CC-CTTTTTTCTTCCEEE
T ss_pred             CCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC----------cc-ChhhcCCCCCcCEEE
Confidence            3566666544   35677777777776666553 466777777777763332          11 222156666777777


Q ss_pred             EEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeE
Q 044597          164 IWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVL  240 (341)
Q Consensus       164 l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  240 (341)
                      ++++.   ...++. .+..+++|+.|+++++     .++.+|  .+..+ ++|++|++++|.++..+...+..+++|++|
T Consensus        83 Ls~n~---l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           83 LSTNQ---LQSLPNGVFDKLTQLKELALNTN-----QLQSLPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             CCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCc---CCccCHhHhcCccCCCEEEcCCC-----cCcccCHhHhccC-CcCCEEECCCCccceeCHHHhccCCCccEE
Confidence            66663   222222 2566777777777766     666665  35667 777777777777655444446666666666


Q ss_pred             EE
Q 044597          241 KL  242 (341)
Q Consensus       241 ~l  242 (341)
                      ++
T Consensus       154 ~l  155 (208)
T 2o6s_A          154 WL  155 (208)
T ss_dssp             EC
T ss_pred             Ee
Confidence            66

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=1.9e-16  Score=152.22  Aligned_cols=201  Identities=18%  Similarity=0.143  Sum_probs=126.8

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecCcC----CCCCCceEEeCCCcchhhhhCCCCCCceEE-EEeecch
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAIT----LPAHPGKYSLHPCCSTEEILGRLPNLQNLR-IWGDLSY  170 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~----lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~  170 (341)
                      ..+++|+.|+|++|.+..+|.+++++++|+.|+++++.    +|..+..+... .. +++.++.+++|+.|+ +..+.  
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~-~~~~l~~l~~L~~L~~l~~n~--  421 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LY-EKETLQYFSTLKAVDPMRAAY--  421 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GG-HHHHHHHHHHHHHHCGGGHHH--
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cC-CHHHHHHHHhcccCcchhhcc--
Confidence            56777778888888777888888888888887775510    00000000001 12 233267777777776 33331  


Q ss_pred             hhhHHHH------HhcC--CCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          171 YQSLLSK------SLCR--LSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       171 ~~~~l~~------~l~~--l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                       ...++.      .+..  ...|+.|++++|     .++.+|.++.+ ++|+.|++++|.++ ..+..++.+++|+.|++
T Consensus       422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-----~l~~lp~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  493 (567)
T 1dce_A          422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHK-----DLTVLCHLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQA  493 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-----CCSSCCCGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred             -cchhhhhhhhcccccccCccCceEEEecCC-----CCCCCcCcccc-ccCcEeecCccccc-ccchhhhcCCCCCEEEC
Confidence             111111      1111  135889999888     78888866788 89999999999986 44457888888888888


Q ss_pred             EEeC-cEeeecCCCCCcccEEEEecCCCCCce--eecCCCCCcccEEEEecCCCCCccccccC----CCCCCcEEE
Q 044597          243 KYLG-RKLACSSDGFPKLKVLHLKSMLWLEEW--TMGIKAMPKLECVIINPCAHLKRIPEQLW----CLKSLNKLE  311 (341)
Q Consensus       243 ~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~  311 (341)
                      +.+. ..++ ..+.+++|++|++++ +.+..+  |...+.+++|+.|++++|+ +..+|+.+.    .+++|+.|+
T Consensus       494 s~N~l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          494 SDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            3332 2222 556677888888877 346665  5566678888888888877 666655432    267777775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=3.1e-14  Score=136.42  Aligned_cols=182  Identities=20%  Similarity=0.175  Sum_probs=119.2

Q ss_pred             eeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597           77 RLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR  155 (341)
Q Consensus        77 ~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~  155 (341)
                      +++.|+++ +++..+|..+ .  ++|++|++++|.+..+|   ..+++|++|+++++.+..            ++. +..
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~------------ip~-l~~  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-P--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST------------LPE-LPA  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-C--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC------------CCC-CCT
T ss_pred             CccEEEeCCCCCCccCHhH-c--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC------------cch-hhc
Confidence            78888887 5788899877 3  78999999999888888   568899999998844421            222 333


Q ss_pred             CCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCC
Q 044597          156 LPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLP  235 (341)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~  235 (341)
                        +|++|++++|.   +..+|.   .+++|+.|++++|     .++.+|.  .+ ++|+.|++++|.++..+  .++  +
T Consensus       121 --~L~~L~Ls~N~---l~~lp~---~l~~L~~L~Ls~N-----~l~~lp~--~l-~~L~~L~Ls~N~L~~lp--~l~--~  180 (571)
T 3cvr_A          121 --SLKHLDVDNNQ---LTMLPE---LPALLEYINADNN-----QLTMLPE--LP-TSLEVLSVRNNQLTFLP--ELP--E  180 (571)
T ss_dssp             --TCCEEECCSSC---CSCCCC---CCTTCCEEECCSS-----CCSCCCC--CC-TTCCEEECCSSCCSCCC--CCC--T
T ss_pred             --CCCEEECCCCc---CCCCCC---cCccccEEeCCCC-----ccCcCCC--cC-CCcCEEECCCCCCCCcc--hhh--C
Confidence              88888888875   333444   5788888888887     7777773  34 78888888888875422  244  7


Q ss_pred             CCCeEEEEEeCcE-eeecCCCCCcc-------cEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccccc
Q 044597          236 VLQVLKLKYLGRK-LACSSDGFPKL-------KVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQL  301 (341)
Q Consensus       236 ~L~~L~l~~~~~~-~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l  301 (341)
                      +|+.|+++.+... ++. .  .++|       +.|++++ +.++.+|...+.+++|+.|++++|+.-+.+|..+
T Consensus       181 ~L~~L~Ls~N~L~~lp~-~--~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          181 SLEALDVSTNLLESLPA-V--PVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             TCCEEECCSSCCSSCCC-C--C--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             CCCEEECcCCCCCchhh-H--HHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            7888877333211 111 1  1145       6666665 3455566555556666666666666333344433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.48  E-value=1e-13  Score=120.40  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=118.7

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      +.+..+.+|++|+++ +.+..+| .+ +.+++|++|++++|.+..+|. +..+++|++|+++++.+..            
T Consensus        35 ~~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~------------   99 (263)
T 1xeu_A           35 VSQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN------------   99 (263)
T ss_dssp             ECHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC------------
T ss_pred             cchhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC------------
Confidence            356678889999998 5888888 57 999999999999999999987 9999999999999854432            


Q ss_pred             hhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCC
Q 044597          149 TEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPM  228 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~  228 (341)
                      ++. +.. ++|++|++++|...   .+ ..+..+++|+.|++++|     .++.+|.+..+ ++|+.|++++|.++..  
T Consensus       100 l~~-~~~-~~L~~L~L~~N~l~---~~-~~l~~l~~L~~L~Ls~N-----~i~~~~~l~~l-~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A          100 LNG-IPS-ACLSRLFLDNNELR---DT-DSLIHLKNLEILSIRNN-----KLKSIVMLGFL-SKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             CTT-CCC-SSCCEEECCSSCCS---BS-GGGTTCTTCCEEECTTS-----CCCBCGGGGGC-TTCCEEECTTSCCCBC--
T ss_pred             cCc-ccc-CcccEEEccCCccC---CC-hhhcCcccccEEECCCC-----cCCCChHHccC-CCCCEEECCCCcCcch--
Confidence            333 444 88999999998633   33 35889999999999998     78888867788 8999999999997544  


Q ss_pred             ccCcCCCCCCeEEEEE
Q 044597          229 PALEKLPVLQVLKLKY  244 (341)
Q Consensus       229 ~~l~~l~~L~~L~l~~  244 (341)
                      ..+..+++|+.|+++.
T Consensus       166 ~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             TTSTTCCCCCEEEEEE
T ss_pred             HHhccCCCCCEEeCCC
Confidence            6788899999999933

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.47  E-value=2e-14  Score=124.96  Aligned_cols=164  Identities=20%  Similarity=0.162  Sum_probs=125.7

Q ss_pred             cceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      +.++..++++ +.+..++ .+ ..+++|++|++++|.+..+| .+..+++|++|+++++.+..            ++. +
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~-~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~------------~~~-l   81 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQ-KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD------------LSP-L   81 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CH-HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------------CGG-G
T ss_pred             HHHHHHHHhcCCCccccc-ch-hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC------------Chh-h
Confidence            4556666676 5777777 56 89999999999999999998 79999999999999865542            455 8


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEK  233 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  233 (341)
                      +.+++|++|++++|..   ..++. +.. ++|+.|++++|     .++.++.+..+ ++|+.|++++|.++.  ++.++.
T Consensus        82 ~~l~~L~~L~L~~N~l---~~l~~-~~~-~~L~~L~L~~N-----~l~~~~~l~~l-~~L~~L~Ls~N~i~~--~~~l~~  148 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRL---KNLNG-IPS-ACLSRLFLDNN-----ELRDTDSLIHL-KNLEILSIRNNKLKS--IVMLGF  148 (263)
T ss_dssp             TTCSSCCEEECCSSCC---SCCTT-CCC-SSCCEEECCSS-----CCSBSGGGTTC-TTCCEEECTTSCCCB--CGGGGG
T ss_pred             ccCCCCCEEECCCCcc---CCcCc-ccc-CcccEEEccCC-----ccCCChhhcCc-ccccEEECCCCcCCC--ChHHcc
Confidence            8999999999999853   33332 333 89999999998     78887777788 899999999999744  357888


Q ss_pred             CCCCCeEEEEEeCcEeeecCCCCCcccEEEEecC
Q 044597          234 LPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSM  267 (341)
Q Consensus       234 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  267 (341)
                      +++|+.|+++.+..........+++|+.|++++.
T Consensus       149 l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          149 LSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred             CCCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence            9999999983332222244567788888888873

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=5.9e-14  Score=134.46  Aligned_cols=174  Identities=17%  Similarity=0.141  Sum_probs=134.3

Q ss_pred             CccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHh
Q 044597          100 NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSL  179 (341)
Q Consensus       100 ~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l  179 (341)
                      +|++|++++|.+..+|..+.  ++|++|+++++.+.          .+  +   +.+++|++|++++|.   +..+|. +
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~----------~i--p---~~l~~L~~L~Ls~N~---l~~ip~-l  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI----------SL--P---ELPASLEYLDACDNR---LSTLPE-L  118 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS----------CC--C---CCCTTCCEEECCSSC---CSCCCC-C
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc----------cc--c---cccCCCCEEEccCCC---CCCcch-h
Confidence            89999999999999998774  88999999985443          22  2   357899999999985   334555 5


Q ss_pred             cCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCc
Q 044597          180 CRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPK  258 (341)
Q Consensus       180 ~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~  258 (341)
                      ..  +|+.|++++|     .++.+|.  .+ ++|+.|++++|.++.  ++.  .+++|++|+++.+. ..++. ..  ++
T Consensus       119 ~~--~L~~L~Ls~N-----~l~~lp~--~l-~~L~~L~Ls~N~l~~--lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~  181 (571)
T 3cvr_A          119 PA--SLKHLDVDNN-----QLTMLPE--LP-ALLEYINADNNQLTM--LPE--LPTSLEVLSVRNNQLTFLPE-LP--ES  181 (571)
T ss_dssp             CT--TCCEEECCSS-----CCSCCCC--CC-TTCCEEECCSSCCSC--CCC--CCTTCCEEECCSSCCSCCCC-CC--TT
T ss_pred             hc--CCCEEECCCC-----cCCCCCC--cC-ccccEEeCCCCccCc--CCC--cCCCcCEEECCCCCCCCcch-hh--CC
Confidence            44  9999999998     7888885  46 899999999999855  333  67899999994333 22222 22  89


Q ss_pred             ccEEEEecCCCCCceeecCCCCCcc-------cEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          259 LKVLHLKSMLWLEEWTMGIKAMPKL-------ECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       259 L~~L~l~~~~~l~~~~~~~~~l~~L-------~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      |+.|+++++ .++.+|. ...  +|       +.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus       182 L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          182 LEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CCEEECCSS-CCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence            999999984 5777775 332  67       999999998 88999989889999999999998

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.45  E-value=1.3e-15  Score=142.92  Aligned_cols=238  Identities=18%  Similarity=0.139  Sum_probs=117.2

Q ss_pred             ccCCcceeeeeccC-CCCcc-----cChhhhhcCCCccEEecCCccccc-----cchhhcccccCceeeecCcCC-----
Q 044597           71 IMDQEVRLRENSII-PSLKS-----LPSSFLSSLLNLYTLEMPFSYIDH-----TADEFWKMSKLRYLNFGAITL-----  134 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~-----lp~~if~~L~~L~~L~Ls~~~~~~-----lp~~i~~L~~L~~L~l~~~~l-----  134 (341)
                      .+..+++|++|+++ +.+..     +...++...++|++|++++|.+..     ++..+..+++|++|+++++.+     
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            34455566666665 23321     111111224456666666654432     344455566666666665221     


Q ss_pred             ----------CCCCceEEeCCCc-c------hhhhhCCCCCCceEEEEeecchh--hhHHHHHh-cCCCCCCEEEEEeCC
Q 044597          135 ----------PAHPGKYSLHPCC-S------TEEILGRLPNLQNLRIWGDLSYY--QSLLSKSL-CRLSCLESLKLANES  194 (341)
Q Consensus       135 ----------p~~i~~~~~~~~~-~------~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l-~~l~~L~~L~l~~~~  194 (341)
                                ...++.+.++++. .      +...+..+++|++|+++++....  ...+...+ ..+++|+.|++++| 
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-  266 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-  266 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-
Confidence                      1122334433311 0      11114455666666666554111  12222222 24566666666665 


Q ss_pred             CCCCCCcc-----Cc-ccccccCCccEEEEEeecCCCCCCccCc-----CCCCCCeEEEEEeCcE------eeecCCCCC
Q 044597          195 KMPRRSNT-----IL-AEYQFPPSLTHLSFSNIELIDDPMPALE-----KLPVLQVLKLKYLGRK------LACSSDGFP  257 (341)
Q Consensus       195 e~~~~l~~-----lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~~~------~~~~~~~~~  257 (341)
                          .++.     ++ .+..+ ++|++|++++|.+.......+.     ..++|++|+++.+...      +......++
T Consensus       267 ----~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  341 (461)
T 1z7x_W          267 ----GITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR  341 (461)
T ss_dssp             ----CCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred             ----CCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence                4444     34 44445 6666666666654322222221     1246666666221110      011112356


Q ss_pred             cccEEEEecCCCCCceee-cC-----CCCCcccEEEEecCCCCC-----ccccccCCCCCCcEEEEecCC
Q 044597          258 KLKVLHLKSMLWLEEWTM-GI-----KAMPKLECVIINPCAHLK-----RIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       258 ~L~~L~l~~~~~l~~~~~-~~-----~~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +|++|+++++ .+..... ..     ...++|++|++++|. ++     .+|..+..+++|++|++++|+
T Consensus       342 ~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          342 FLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             SCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            7777777764 3333211 11     125688888888886 55     567777778888888888886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.43  E-value=2.6e-13  Score=115.36  Aligned_cols=140  Identities=20%  Similarity=0.221  Sum_probs=89.3

Q ss_pred             eeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      .++.+ ..+..+|..+ .  ++|++|++++|.+..+ |..+..+++|++|+++++.+.          .. +...++.++
T Consensus        23 ~v~c~~~~l~~ip~~~-~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~----------~i-~~~~~~~l~   88 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGI-P--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG----------AL-PVGVFDSLT   88 (229)
T ss_dssp             EEECTTSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-CTTTTTTCT
T ss_pred             EeEccCCCcCccCCCC-C--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC----------Cc-ChhhcccCC
Confidence            34444 3566677655 2  6677777777766666 455677777777777764332          22 222256677


Q ss_pred             CCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcCCC
Q 044597          158 NLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLP  235 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~  235 (341)
                      +|+.|++++|.   +..++. .+..+++|+.|++++|     .+..+| .+..+ ++|++|++++|.++..+...+..++
T Consensus        89 ~L~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~Ls~N-----~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           89 QLTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCN-----KLTELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             TCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCSCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCEEECCCCc---CCccChhHhCcchhhCeEeccCC-----cccccCcccccC-CCCCEEECCCCcCCccCHHHHhCCC
Confidence            77777777664   223332 3566777777777777     677777 66777 7777777777777555555566777


Q ss_pred             CCCeEEE
Q 044597          236 VLQVLKL  242 (341)
Q Consensus       236 ~L~~L~l  242 (341)
                      +|+.|++
T Consensus       160 ~L~~L~l  166 (229)
T 3e6j_A          160 SLTHAYL  166 (229)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEe
Confidence            7777766

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.43  E-value=2.7e-15  Score=140.70  Aligned_cols=228  Identities=14%  Similarity=0.022  Sum_probs=132.4

Q ss_pred             ccCCcceeeeeccC-CCCcc-cChhhhhcCC----CccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCCc
Q 044597           71 IMDQEVRLRENSII-PSLKS-LPSSFLSSLL----NLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHPG  139 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~-lp~~if~~L~----~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~  139 (341)
                      .+..+++|++|+++ +.+.. -+..++..++    +|++|++++|.+.     .+|..+..+++|++|+++++.+..   
T Consensus        51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~---  127 (461)
T 1z7x_W           51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD---  127 (461)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH---
T ss_pred             HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch---
Confidence            34455667777776 34443 2333434455    5777777777555     456667777777777777632210   


Q ss_pred             eEEeCCCcchhh---h-hCCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccc----
Q 044597          140 KYSLHPCCSTEE---I-LGRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEY----  207 (341)
Q Consensus       140 ~~~~~~~~~~~~---~-l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~----  207 (341)
                            .. +..   + ....++|++|++++|...  ....++..+..+++|+.|++++|     .++...  .+.    
T Consensus       128 ------~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-----~i~~~~~~~l~~~l~  195 (461)
T 1z7x_W          128 ------AG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-----DINEAGVRVLCQGLK  195 (461)
T ss_dssp             ------HH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-----BCHHHHHHHHHHHHH
T ss_pred             ------HH-HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-----CcchHHHHHHHHHHh
Confidence                  00 111   1 223557788887777522  23456666777788888888776     444322  221    


Q ss_pred             -cccCCccEEEEEeecCCCCC----CccCcCCCCCCeEEEEEeCcEe-------eecCCCCCcccEEEEecCCCCCc---
Q 044597          208 -QFPPSLTHLSFSNIELIDDP----MPALEKLPVLQVLKLKYLGRKL-------ACSSDGFPKLKVLHLKSMLWLEE---  272 (341)
Q Consensus       208 -~lp~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~-------~~~~~~~~~L~~L~l~~~~~l~~---  272 (341)
                       .. ++|++|++++|.++...    ...+..+++|++|+++.+....       ......+++|++|+++++ .+..   
T Consensus       196 ~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~  273 (461)
T 1z7x_W          196 DSP-CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGC  273 (461)
T ss_dssp             HSC-CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred             cCC-CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHH
Confidence             23 58888888888765432    2345567888888883322110       111224778888888875 4554   


Q ss_pred             --eeecCCCCCcccEEEEecCCCCCc-----cccccC-CCCCCcEEEEecCC
Q 044597          273 --WTMGIKAMPKLECVIINPCAHLKR-----IPEQLW-CLKSLNKLELWWPE  316 (341)
Q Consensus       273 --~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~-~l~~L~~L~l~~~~  316 (341)
                        ++.....+++|++|++++|. ++.     ++..+. ..++|++|++++|.
T Consensus       274 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          274 GDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC
Confidence              33333457888888888886 432     222222 23688888888886

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.41  E-value=2.5e-13  Score=114.73  Aligned_cols=140  Identities=19%  Similarity=0.244  Sum_probs=92.0

Q ss_pred             eeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      .++.. ..++.+|..+ .  ++|++|++++|.+..+|. .+..+++|++|+++++.+.          ...+.. +..++
T Consensus        15 ~v~c~~~~l~~iP~~l-~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~----------~~~~~~-~~~l~   80 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNL-P--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS----------ELAPDA-FQGLR   80 (220)
T ss_dssp             EEECTTSCCSSCCSSC-C--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC----------EECTTT-TTTCS
T ss_pred             EEEcCCCCcCcCCCcc-C--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC----------CcCHHH-hhCCc
Confidence            34444 4667777766 3  577777888777777765 5677777777777774442          110233 67777


Q ss_pred             CCceEEEEeecchhhhHHHHH-hcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597          158 NLQNLRIWGDLSYYQSLLSKS-LCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKL  234 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l  234 (341)
                      +|++|+++++.   +..+|.. +..+++|+.|++++|     .+..++  .+..+ ++|+.|++++|.++..+...+..+
T Consensus        81 ~L~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l  151 (220)
T 2v9t_B           81 SLNSLVLYGNK---ITELPKSLFEGLFSLQLLLLNAN-----KINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPL  151 (220)
T ss_dssp             SCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             CCCEEECCCCc---CCccCHhHccCCCCCCEEECCCC-----CCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCC
Confidence            77777777764   3334433 466777777777777     666664  56677 777888887777765555567777


Q ss_pred             CCCCeEEE
Q 044597          235 PVLQVLKL  242 (341)
Q Consensus       235 ~~L~~L~l  242 (341)
                      ++|+.|++
T Consensus       152 ~~L~~L~L  159 (220)
T 2v9t_B          152 RAIQTMHL  159 (220)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEe
Confidence            77777776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=1.6e-13  Score=114.70  Aligned_cols=176  Identities=16%  Similarity=0.163  Sum_probs=133.9

Q ss_pred             cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHH-Hhc
Q 044597          102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SLC  180 (341)
Q Consensus       102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~  180 (341)
                      +.++.+++.+..+|..+  .++|++|+++++.+.          .. ++..++.+++|++|+++++.   ...++. .+.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~----------~~-~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~   73 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLK----------SL-PNGVFDELTSLTQLYLGGNK---LQSLPNGVFN   73 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC----------CC-CTTTTTTCTTCSEEECCSSC---CCCCCTTTTT
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccC----------cC-ChhhhcccccCcEEECCCCc---cCccChhhcC
Confidence            56788888888888655  469999999985443          22 33227899999999999885   334443 468


Q ss_pred             CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeee-cCCCC
Q 044597          181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLAC-SSDGF  256 (341)
Q Consensus       181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~  256 (341)
                      .+++|+.|++++|     .++.+|  .+..+ ++|++|++++|.++..+...++.+++|++|+++.+. ..... ....+
T Consensus        74 ~l~~L~~L~Ls~n-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l  147 (208)
T 2o6s_A           74 KLTSLTYLNLSTN-----QLQSLPNGVFDKL-TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  147 (208)
T ss_dssp             TCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             CCCCcCEEECCCC-----cCCccCHhHhcCc-cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence            8999999999998     788887  46789 999999999999876666668999999999993332 22222 24568


Q ss_pred             CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCC
Q 044597          257 PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKS  306 (341)
Q Consensus       257 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  306 (341)
                      ++|++|++++.+ +      .+.+++|+.|.+..+..-+.+|..++.++.
T Consensus       148 ~~L~~L~l~~N~-~------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          148 TSLQYIWLHDNP-W------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTCCEEECCSCC-B------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCccEEEecCCC-e------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            899999999853 1      245788999999988866778888776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=2.7e-14  Score=129.91  Aligned_cols=214  Identities=16%  Similarity=0.130  Sum_probs=147.0

Q ss_pred             CCCcccChhhhhcCCCccEEecCCccccccc-----hhhcccc-cCceeeecCcCCCCCCceEEeCCCcchhhhhCCC--
Q 044597           85 PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-----DEFWKMS-KLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL--  156 (341)
Q Consensus        85 ~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-----~~i~~L~-~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l--  156 (341)
                      +++....+.++...++|++|++++|.+...+     ..+..++ +|++|+++++.+..         .. +.. +..+  
T Consensus         8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---------~~-~~~-l~~~l~   76 (362)
T 3goz_A            8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF---------KN-SDE-LVQILA   76 (362)
T ss_dssp             CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG---------SC-HHH-HHHHHH
T ss_pred             ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH---------HH-HHH-HHHHHh
Confidence            4666444444377777999999999888876     5677888 89999999843321         11 333 4333  


Q ss_pred             ---CCCceEEEEeecch--hhhHHHHHhcCC-CCCCEEEEEeCCCCCCCCccCc--cc----ccccCCccEEEEEeecCC
Q 044597          157 ---PNLQNLRIWGDLSY--YQSLLSKSLCRL-SCLESLKLANESKMPRRSNTIL--AE----YQFPPSLTHLSFSNIELI  224 (341)
Q Consensus       157 ---~~L~~L~l~~~~~~--~~~~l~~~l~~l-~~L~~L~l~~~~e~~~~l~~lp--~~----~~lp~~L~~L~l~~~~l~  224 (341)
                         ++|++|++++|...  ....+...+..+ ++|+.|++++|     .++..+  .+    ..+|.+|++|++++|.++
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-----DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-----CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-----cCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence               99999999999732  234455557777 89999999998     777665  32    233469999999999986


Q ss_pred             CCCCcc----CcCCC-CCCeEEEEEeCcE-ee-----ecCCCC-CcccEEEEecCCCCCc-----eeecCCC-CCcccEE
Q 044597          225 DDPMPA----LEKLP-VLQVLKLKYLGRK-LA-----CSSDGF-PKLKVLHLKSMLWLEE-----WTMGIKA-MPKLECV  286 (341)
Q Consensus       225 ~~~~~~----l~~l~-~L~~L~l~~~~~~-~~-----~~~~~~-~~L~~L~l~~~~~l~~-----~~~~~~~-l~~L~~L  286 (341)
                      ......    +..++ +|++|+++.+... ..     .....+ ++|++|+++++. +..     ++..... .++|++|
T Consensus       152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L  230 (362)
T 3goz_A          152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSL  230 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEE
T ss_pred             HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEE
Confidence            544433    34555 9999999333211 11     012234 599999999854 555     3322223 3599999


Q ss_pred             EEecCCCCCccc-----cccCCCCCCcEEEEecCC
Q 044597          287 IINPCAHLKRIP-----EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       287 ~l~~c~~l~~lp-----~~l~~l~~L~~L~l~~~~  316 (341)
                      ++++|. ++..+     ..+..+++|+.|++++|.
T Consensus       231 ~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          231 NLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             ECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             ECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            999998 65543     234678999999999985

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.41  E-value=1.4e-13  Score=133.01  Aligned_cols=162  Identities=14%  Similarity=0.121  Sum_probs=90.0

Q ss_pred             CCcceeeeeccC-CCCc-----ccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC--cC-----------
Q 044597           73 DQEVRLRENSII-PSLK-----SLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA--IT-----------  133 (341)
Q Consensus        73 ~~l~~Lr~L~l~-~~~~-----~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~--~~-----------  133 (341)
                      ..+++|+.|++. +.+.     .++..+ .++++|++|++++|.+..+|..+..+++|++|+++.  ..           
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            356778888886 3443     444444 788888888888887777887778888888887763  00           


Q ss_pred             -----------------CCC------CCceEEeCCCc----chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCC
Q 044597          134 -----------------LPA------HPGKYSLHPCC----STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLE  186 (341)
Q Consensus       134 -----------------lp~------~i~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~  186 (341)
                                       +|.      .++.+.++++.    .+...++.+++|++|++.++-  ....++.....+++|+
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCC
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCC
Confidence                             000      01334443311    011114666777777766332  2334444455667777


Q ss_pred             EEEEEe----------CCCCCCCCcc--Cc-ccccccCCccEEEEEeecCCCCCCccCcC-CCCCCeEEE
Q 044597          187 SLKLAN----------ESKMPRRSNT--IL-AEYQFPPSLTHLSFSNIELIDDPMPALEK-LPVLQVLKL  242 (341)
Q Consensus       187 ~L~l~~----------~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l  242 (341)
                      .|+++.          |.    .++.  ++ ....+ ++|++|+++.+.++...+..++. +++|+.|++
T Consensus       346 ~L~L~~g~~~~~~~~~~~----~~~~~~~~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l  410 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEG----LVSQRGLIALAQGC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRL  410 (592)
T ss_dssp             EEEEECCCCSSTTSSTTC----CCCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred             EEEeecCccccccccccC----ccCHHHHHHHHhhC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence            777773          32    2221  11 12235 56666666555554433333433 556666666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.38  E-value=4e-13  Score=114.18  Aligned_cols=132  Identities=20%  Similarity=0.225  Sum_probs=110.7

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      .+|++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +..+++|++|+++++.+.          .. ++..+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~----------~l-~~~~~  108 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT----------VL-PSAVF  108 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CC-CTTTT
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC----------cc-ChhHh
Confidence            789999998 588888655559999999999999999999865 689999999999995443          22 22327


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDP  227 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~  227 (341)
                      +.+++|++|+++++.   +..+|..+..+++|+.|++++|     .+..+|  .+..+ ++|+.|++++|.+.+..
T Consensus       109 ~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          109 DRLVHLKELFMCCNK---LTELPRGIERLTHLTHLALDQN-----QLKSIPHGAFDRL-SSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTCTTCCEEECCSSC---CCSCCTTGGGCTTCSEEECCSS-----CCCCCCTTTTTTC-TTCCEEECTTSCBCTTB
T ss_pred             CcchhhCeEeccCCc---ccccCcccccCCCCCEEECCCC-----cCCccCHHHHhCC-CCCCEEEeeCCCccCCc
Confidence            899999999999984   5577888899999999999998     888887  57889 99999999999976543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.38  E-value=3.6e-13  Score=113.74  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=108.9

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      ..++.|+++ +.+..+|...|+.+++|++|+|++|.+..+ |..+..+++|++|+++++.+.          .. ++..+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----------~l-~~~~f  100 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT----------EL-PKSLF  100 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC----------CC-CTTTT
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC----------cc-CHhHc
Confidence            578999998 689999886669999999999999998887 778999999999999995443          22 33327


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDD  226 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~  226 (341)
                      ..+++|++|++++|...  ...+..+..+++|+.|++++|     .++.++  .+..+ ++|+.|++++|.+.++
T Consensus       101 ~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKIN--CLRVDAFQDLHNLNLLSLYDN-----KLQTIAKGTFSPL-RAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-----CCSCCCTTTTTTC-TTCCEEECCSSCEECS
T ss_pred             cCCCCCCEEECCCCCCC--EeCHHHcCCCCCCCEEECCCC-----cCCEECHHHHhCC-CCCCEEEeCCCCcCCC
Confidence            89999999999998622  222456889999999999999     888887  57889 9999999999987543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.38  E-value=6.2e-13  Score=112.27  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=95.3

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccch--hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD--EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR  155 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~--~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~  155 (341)
                      +.++++ +.++.+|..+ .  ..+++|++++|.+..++.  .+..+++|++|+++++.+.          ...+.. ++.
T Consensus        14 ~~l~~s~n~l~~iP~~~-~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~----------~i~~~~-~~~   79 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-P--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT----------DIEEGA-FEG   79 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC----------EECTTT-TTT
T ss_pred             CEeEeCCCCcccCccCC-C--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC----------EECHHH-hCC
Confidence            356665 4677777766 3  345788888887777732  3677888888888774442          120223 777


Q ss_pred             CCCCceEEEEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCCCCccCc
Q 044597          156 LPNLQNLRIWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDDPMPALE  232 (341)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~~~~~l~  232 (341)
                      +++|++|+++++.   ...+ +..+..+++|+.|++++|     .+..+ | .+..+ ++|+.|++++|.++......+.
T Consensus        80 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           80 ASGVNEILLTSNR---LENVQHKMFKGLESLKTLMLRSN-----RITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             CTTCCEEECCSSC---CCCCCGGGGTTCSSCCEEECTTS-----CCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTT
T ss_pred             CCCCCEEECCCCc---cCccCHhHhcCCcCCCEEECCCC-----cCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhc
Confidence            7788888877774   2222 234677788888888877     66666 3 66777 7888888888887665566677


Q ss_pred             CCCCCCeEEE
Q 044597          233 KLPVLQVLKL  242 (341)
Q Consensus       233 ~l~~L~~L~l  242 (341)
                      .+++|+.|++
T Consensus       151 ~l~~L~~L~L  160 (220)
T 2v70_A          151 TLHSLSTLNL  160 (220)
T ss_dssp             TCTTCCEEEC
T ss_pred             CCCCCCEEEe
Confidence            7778887777

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.36  E-value=1e-12  Score=127.78  Aligned_cols=200  Identities=15%  Similarity=0.110  Sum_probs=141.3

Q ss_pred             hcCCCccEEecCCcccc---ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhh
Q 044597           96 SSLLNLYTLEMPFSYID---HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQ  172 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~---~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  172 (341)
                      ..+++|++|+++.|.+.   ..|..+..+.+|++|++......          .. ... +..+++|+.+++..+.....
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~----------~~-~~~-~~~l~~L~~l~l~~~~~~~~  435 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI----------TM-SSN-FLGLEQLEHLDFQHSNLKQM  435 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE----------EE-CSC-CTTCTTCCEEECTTSEEEST
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccc----------cc-ccc-ccccccccchhhhhcccccc
Confidence            46777888888887443   34566677778888877762111          12 333 67788899988876541111


Q ss_pred             hHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCC-CCCCccCcCCCCCCeEEEEEeC-cE
Q 044597          173 SLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELI-DDPMPALEKLPVLQVLKLKYLG-RK  248 (341)
Q Consensus       173 ~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~-~~  248 (341)
                       .-+..+..+++++.++++.+     .+...+  .+..+ ++++.|++++|... ......+..+++|++|+++.+. ..
T Consensus       436 -~~~~~~~~l~~l~~l~ls~n-----~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          436 -SEFSVFLSLRNLIYLDISHT-----HTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             -TSSCTTTTCTTCCEEECTTS-----CCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             -cccccccccccccccccccc-----ccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence             11134678899999999887     566554  56677 89999999998742 2344568899999999993333 22


Q ss_pred             e-eecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEEecCCCCCcc-ccccCCC-CCCcEEEEecCC
Q 044597          249 L-ACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVIINPCAHLKRI-PEQLWCL-KSLNKLELWWPE  316 (341)
Q Consensus       249 ~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l-~~L~~L~l~~~~  316 (341)
                      . +.....+++|++|++++ +.+..++. ..+.+++|+.|++++|. +..+ |..+.++ ++|++|++++||
T Consensus       509 l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             cChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            2 23456789999999998 45777754 35678999999999999 5554 6667777 689999999866

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.35  E-value=2.1e-13  Score=131.87  Aligned_cols=223  Identities=15%  Similarity=0.089  Sum_probs=125.8

Q ss_pred             CcceeeeeccCC-CCcccChhhhhcCCCccEEecCCccccc--cchhhcccccCceeeecCcCCCCCCceEEeCCCcchh
Q 044597           74 QEVRLRENSIIP-SLKSLPSSFLSSLLNLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE  150 (341)
Q Consensus        74 ~l~~Lr~L~l~~-~~~~lp~~if~~L~~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~  150 (341)
                      .+.+|+.|++.. ....+|..+ ..+++|++|++++|.+..  ++..+..+++|++|++++ .+         .... ++
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~---------~~~~-l~  335 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VI---------GDRG-LE  335 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GG---------HHHH-HH
T ss_pred             ccccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-cc---------CHHH-HH
Confidence            344444444432 233445444 666666666666664322  223345666666666653 00         0011 23


Q ss_pred             hhhCCCCCCceEEEEe----------ecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-cccc-ccCCccEEE
Q 044597          151 EILGRLPNLQNLRIWG----------DLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQ-FPPSLTHLS  217 (341)
Q Consensus       151 ~~l~~l~~L~~L~l~~----------~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~-lp~~L~~L~  217 (341)
                      .....+++|++|++.+          +.......+......+++|+.|+++.+     .++.- + .+.. + ++|+.|+
T Consensus       336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-----~l~~~~~~~l~~~~-~~L~~L~  409 (592)
T 3ogk_B          336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-----DITNESLESIGTYL-KNLCDFR  409 (592)
T ss_dssp             HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-----CCCHHHHHHHHHHC-CSCCEEE
T ss_pred             HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-----CccHHHHHHHHhhC-CCCcEEE
Confidence            3135678899999884          332233345455566888888888655     44432 2 4443 6 7888888


Q ss_pred             EEee----cCCCCCCc-----cCcCCCCCCeEEEEEeCcE-----eeecCCCCCcccEEEEecCCCCCc--eeecCCCCC
Q 044597          218 FSNI----ELIDDPMP-----ALEKLPVLQVLKLKYLGRK-----LACSSDGFPKLKVLHLKSMLWLEE--WTMGIKAMP  281 (341)
Q Consensus       218 l~~~----~l~~~~~~-----~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~  281 (341)
                      ++++    .++..+..     .+..+++|+.|+++++...     .......+++|++|+++++. +..  ++.....++
T Consensus       410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~  488 (592)
T 3ogk_B          410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCP  488 (592)
T ss_dssp             EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCT
T ss_pred             EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCc
Confidence            8743    34332211     1455788888888331110     11111247788888888754 433  222234678


Q ss_pred             cccEEEEecCCCCCc--cccccCCCCCCcEEEEecCC
Q 044597          282 KLECVIINPCAHLKR--IPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       282 ~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~  316 (341)
                      +|+.|++++|+ ++.  ++.....+++|++|++++|.
T Consensus       489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            88888888888 543  34444567888888888887

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.33  E-value=3.4e-13  Score=122.61  Aligned_cols=148  Identities=21%  Similarity=0.291  Sum_probs=113.7

Q ss_pred             ceeeeeccC-CCCcccChhhhh-cCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLS-SLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~-~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      ..++.|+++ +.+..+|...|. ++++|++|+|++|.+..+|. .+..+++|++|+++++.+.          .. ++..
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~----------~~-~~~~  107 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH----------TL-DEFL  107 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----------EE-CTTT
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC----------cC-CHHH
Confidence            347888888 688888888766 89999999999999888874 5899999999999985543          22 2222


Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-c-c---ccccCCccEEEEEeecCCCCC
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-A-E---YQFPPSLTHLSFSNIELIDDP  227 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~-~---~~lp~~L~~L~l~~~~l~~~~  227 (341)
                      +..+++|++|++++|...  ...+..+..+++|+.|++++|     .+..+| . +   ..+ ++|+.|++++|.++..+
T Consensus       108 ~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~N-----~l~~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          108 FSDLQALEVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQN-----QISRFPVELIKDGNKL-PKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             TTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSS-----CCCSCCGGGTC----C-TTCCEEECCSSCCCCCC
T ss_pred             hCCCcCCCEEECCCCccc--EECHHHhCCcccCCEEECCCC-----cCCeeCHHHhcCcccC-CcCCEEECCCCCCCccC
Confidence            888999999999988622  222456888999999999998     888888 4 3   468 89999999999987666


Q ss_pred             CccCcCCCC--CCeEEE
Q 044597          228 MPALEKLPV--LQVLKL  242 (341)
Q Consensus       228 ~~~l~~l~~--L~~L~l  242 (341)
                      ...+..++.  |+.|++
T Consensus       180 ~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          180 LTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             HHHHHHSCHHHHTTEEC
T ss_pred             HHHhhhccHhhcceEEe
Confidence            556777776  377777

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=110.90  Aligned_cols=131  Identities=16%  Similarity=0.144  Sum_probs=106.4

Q ss_pred             eeeeeccC-CCCccc-ChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           77 RLRENSII-PSLKSL-PSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        77 ~Lr~L~l~-~~~~~l-p~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      .+++|+++ +.+..+ |..+|+++++|++|++++|.+..+|. .+..+++|++|+++++.+.          ...+.. +
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~-~  101 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE----------NVQHKM-F  101 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----------CCCGGG-G
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC----------ccCHhH-h
Confidence            45788888 688888 44555999999999999999998876 7999999999999995443          220334 8


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCCC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELIDD  226 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~~  226 (341)
                      +.+++|++|++++|..  ....+..+..+++|+.|++++|     .++.+ | .+..+ ++|+.|++++|.+.+.
T Consensus       102 ~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          102 KGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDN-----QITTVAPGAFDTL-HSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTCSSCCEEECTTSCC--CCBCTTSSTTCTTCSEEECTTS-----CCCCBCTTTTTTC-TTCCEEECCSCCEECS
T ss_pred             cCCcCCCEEECCCCcC--CeECHhHcCCCccCCEEECCCC-----cCCEECHHHhcCC-CCCCEEEecCcCCcCC
Confidence            9999999999999862  2223567889999999999998     78887 5 78889 9999999999997544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=1.5e-12  Score=105.00  Aligned_cols=126  Identities=18%  Similarity=0.195  Sum_probs=77.6

Q ss_pred             hcCCCccEEecCCcccc--ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhh
Q 044597           96 SSLLNLYTLEMPFSYID--HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQS  173 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~--~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  173 (341)
                      ...++|++|++++|.+.  .+|..+..+++|++|+++++.+..            +.. ++.+++|++|++++|....  
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------------~~~-~~~l~~L~~L~Ls~N~l~~--   85 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------------VSN-LPKLPKLKKLELSENRIFG--   85 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------------CSS-CCCCSSCCEEEEESCCCCS--
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------------hhh-hccCCCCCEEECcCCcCch--
Confidence            34466777777777666  677666777777777777644321            223 6667777777777664211  


Q ss_pred             HHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCC---ccCcCCCCCCeEEE
Q 044597          174 LLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPM---PALEKLPVLQVLKL  242 (341)
Q Consensus       174 ~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l  242 (341)
                      .+|..+..+++|+.|++++|     .++.+|   .+..+ ++|+.|++++|.++..+.   ..+..+++|++|++
T Consensus        86 ~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A           86 GLDMLAEKLPNLTHLNLSGN-----KLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             CCCHHHHHCTTCCEEECBSS-----SCCSSGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             HHHHHHhhCCCCCEEeccCC-----ccCcchhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence            14445555677777777776     566653   44566 677777777777644333   24556666666655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=1.6e-12  Score=118.17  Aligned_cols=165  Identities=23%  Similarity=0.233  Sum_probs=121.5

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hc-ccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FW-KMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR  155 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~-~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~  155 (341)
                      +.+++. ..+..+|..+ .  ..+++|+|++|.+..+|.. +. .+++|++|+++++.+.          ...+.. ++.
T Consensus        21 ~~l~c~~~~l~~iP~~~-~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~----------~i~~~~-~~~   86 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-P--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------FISSEA-FVP   86 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-C--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC----------EECTTT-TTT
T ss_pred             CEEEeCCCCcCccCccC-C--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC----------ccChhh-ccC
Confidence            456666 5788999877 3  4589999999999999765 45 8999999999985553          220234 899


Q ss_pred             CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC-
Q 044597          156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL-  231 (341)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l-  231 (341)
                      +++|+.|++++|.   +..++ ..+..+++|+.|++++|     .+..++  .+..+ ++|+.|++++|.++..+...+ 
T Consensus        87 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N-----~i~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~  157 (361)
T 2xot_A           87 VPNLRYLDLSSNH---LHTLDEFLFSDLQALEVLLLYNN-----HIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVELIK  157 (361)
T ss_dssp             CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTC-TTCCEEECCSSCCCSCCGGGTC
T ss_pred             CCCCCEEECCCCc---CCcCCHHHhCCCcCCCEEECCCC-----cccEECHHHhCCc-ccCCEEECCCCcCCeeCHHHhc
Confidence            9999999999985   33333 35789999999999998     788774  78889 999999999999876655555 


Q ss_pred             --cCCCCCCeEEEEEeCcE-ee-ecCCCCCc--ccEEEEec
Q 044597          232 --EKLPVLQVLKLKYLGRK-LA-CSSDGFPK--LKVLHLKS  266 (341)
Q Consensus       232 --~~l~~L~~L~l~~~~~~-~~-~~~~~~~~--L~~L~l~~  266 (341)
                        ..+++|+.|+++.+... ++ .....++.  ++.|++.+
T Consensus       158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence              67899999999433321 11 11223444  47788876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=6.8e-13  Score=104.79  Aligned_cols=81  Identities=20%  Similarity=0.225  Sum_probs=38.3

Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCC-
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPM-  228 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~-  228 (341)
                      ++.+++|++|++++|..  ...+|..+..+++|+.|++++|     .++.+|   .+..+ ++|++|++++|.++..+. 
T Consensus        60 ~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~ls~N-----~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~  131 (149)
T 2je0_A           60 LPKLNKLKKLELSDNRV--SGGLEVLAEKCPNLTHLNLSGN-----KIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDY  131 (149)
T ss_dssp             CCCCTTCCEEECCSSCC--CSCTHHHHHHCTTCCEEECTTS-----CCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTH
T ss_pred             hhcCCCCCEEECCCCcc--cchHHHHhhhCCCCCEEECCCC-----cCCChHHHHHHhhC-CCCCEEeCcCCcccchHHH
Confidence            44444444444444431  1113444444555555555555     444432   34455 556666666665533332 


Q ss_pred             --ccCcCCCCCCeEE
Q 044597          229 --PALEKLPVLQVLK  241 (341)
Q Consensus       229 --~~l~~l~~L~~L~  241 (341)
                        ..++.+++|+.|+
T Consensus       132 ~~~~~~~l~~L~~L~  146 (149)
T 2je0_A          132 RENVFKLLPQLTYLD  146 (149)
T ss_dssp             HHHHHHHCTTCCEET
T ss_pred             HHHHHHHCCCccccc
Confidence              2345555555553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=7e-12  Score=103.56  Aligned_cols=122  Identities=16%  Similarity=0.191  Sum_probs=80.5

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      ++++++ +.+..+|..+ .  ++|++|++++|.+..+|..+..+++|++|+++++.+.          ...+.. +..++
T Consensus        13 ~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~----------~i~~~~-f~~l~   78 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-P--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS----------TLSNQS-FSNMT   78 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-C--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC----------CCCTTT-TTTCT
T ss_pred             CEEEcCCCCCCcCCCCC-C--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC----------EeCHhH-ccCCC
Confidence            456665 4788888877 3  5788999999988888888889999999999884443          120223 66777


Q ss_pred             CCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecC
Q 044597          158 NLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l  223 (341)
                      +|++|++++|.   ...++ ..+..+++|+.|++++|     .++.+|  .+..+ ++|+.|++++|.+
T Consensus        79 ~L~~L~Ls~N~---l~~i~~~~f~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~~  138 (193)
T 2wfh_A           79 QLLTLILSYNR---LRCIPPRTFDGLKSLRLLSLHGN-----DISVVPEGAFNDL-SALSHLAIGANPL  138 (193)
T ss_dssp             TCCEEECCSSC---CCBCCTTTTTTCTTCCEEECCSS-----CCCBCCTTTTTTC-TTCCEEECCSSCE
T ss_pred             CCCEEECCCCc---cCEeCHHHhCCCCCCCEEECCCC-----CCCeeChhhhhcC-ccccEEEeCCCCe
Confidence            77777777664   22222 24556666666666666     555555  34555 6666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.21  E-value=1.4e-11  Score=99.14  Aligned_cols=128  Identities=26%  Similarity=0.292  Sum_probs=102.1

Q ss_pred             hcCCCCCCEEEEEeCCCCCCCCc--cCc-ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcE--eeecC
Q 044597          179 LCRLSCLESLKLANESKMPRRSN--TIL-AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRK--LACSS  253 (341)
Q Consensus       179 l~~l~~L~~L~l~~~~e~~~~l~--~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~  253 (341)
                      ....++|+.|++++|     .+.  .+| .+..+ ++|+.|++++|.++..  ..++.+++|++|+++.+...  .+...
T Consensus        20 ~~~~~~L~~L~l~~n-----~l~~~~i~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           20 NRTPAAVRELVLDNC-----KSNDGKIEGLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             TSCTTSCSEEECCSC-----BCBTTBCSSCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             cCCcccCCEEECCCC-----CCChhhHHHHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            345688999999998     777  788 77889 9999999999997544  77889999999999444322  22223


Q ss_pred             CCCCcccEEEEecCCCCCcee--ecCCCCCcccEEEEecCCCCCcccc----ccCCCCCCcEEEEecCC
Q 044597          254 DGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLECVIINPCAHLKRIPE----QLWCLKSLNKLELWWPE  316 (341)
Q Consensus       254 ~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~~~  316 (341)
                      ..+++|++|+++++ .+..++  ...+.+++|+.|++++|+ +..+|.    .+..+++|++|++.+|.
T Consensus        92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence            35899999999985 577765  456789999999999998 777776    67889999999999997

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=6.1e-12  Score=99.23  Aligned_cols=123  Identities=20%  Similarity=0.149  Sum_probs=93.9

Q ss_pred             cceeeeeccC-CCCc--ccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhh
Q 044597           75 EVRLRENSII-PSLK--SLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEE  151 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~--~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~  151 (341)
                      ..+++.|+++ +.+.  .+|..+ +.+++|++|++++|.+..+ ..++.+++|++|+++++.+..         .. +..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~---------~~-~~~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG---------GL-EVL   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS---------CT-HHH
T ss_pred             CccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc---------hH-HHH
Confidence            4678888887 4676  788877 8999999999999988877 678889999999998855431         23 444


Q ss_pred             hhCCCCCCceEEEEeecchhhhHH--HHHhcCCCCCCEEEEEeCCCCCCCCccCcc-----cccccCCccEEEEE
Q 044597          152 ILGRLPNLQNLRIWGDLSYYQSLL--SKSLCRLSCLESLKLANESKMPRRSNTILA-----EYQFPPSLTHLSFS  219 (341)
Q Consensus       152 ~l~~l~~L~~L~l~~~~~~~~~~l--~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~-----~~~lp~~L~~L~l~  219 (341)
                       ++.+++|++|++++|.   ...+  +..++.+++|+.|++++|     .+..+|.     +..+ ++|+.|+++
T Consensus        84 -~~~l~~L~~L~ls~N~---i~~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~~~~l-~~L~~L~l~  148 (149)
T 2je0_A           84 -AEKCPNLTHLNLSGNK---IKDLSTIEPLKKLENLKSLDLFNC-----EVTNLNDYRENVFKLL-PQLTYLDGY  148 (149)
T ss_dssp             -HHHCTTCCEEECTTSC---CCSHHHHGGGGGCTTCCEEECTTC-----GGGGSTTHHHHHHHHC-TTCCEETTB
T ss_pred             -hhhCCCCCEEECCCCc---CCChHHHHHHhhCCCCCEEeCcCC-----cccchHHHHHHHHHHC-CCcccccCC
Confidence             7778999999999885   3333  367888999999999888     6777652     4567 788887764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=2.5e-13  Score=112.76  Aligned_cols=132  Identities=20%  Similarity=0.225  Sum_probs=93.3

Q ss_pred             CCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEE
Q 044597           86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW  165 (341)
Q Consensus        86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~  165 (341)
                      .++.+|..+ +++++|++|++++|.+..+| .+..+++|++|+++++.+.          .. +.. +..+++|++|+++
T Consensus        36 ~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~----------~l-~~~-~~~~~~L~~L~L~  101 (198)
T 1ds9_A           36 PIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK----------KI-ENL-DAVADTLEELWIS  101 (198)
T ss_dssp             TCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC----------SC-SSH-HHHHHHCSEEEEE
T ss_pred             cHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc----------cc-cch-hhcCCcCCEEECc
Confidence            567777777 99999999999999888888 8888999999999872221          22 223 5566788888888


Q ss_pred             eecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCCc----------cCc
Q 044597          166 GDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPMP----------ALE  232 (341)
Q Consensus       166 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~~----------~l~  232 (341)
                      +|.   ...+| .+..+++|+.|++++|     .+..++   .+..+ ++|++|++++|.+......          .+.
T Consensus       102 ~N~---l~~l~-~~~~l~~L~~L~l~~N-----~i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A          102 YNQ---IASLS-GIEKLVNLRVLYMSNN-----KITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             EEE---CCCHH-HHHHHHHSSEEEESEE-----ECCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CCc---CCcCC-ccccCCCCCEEECCCC-----cCCchhHHHHHhcC-CCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            885   33344 5677788888888887     666654   45677 7888888888876333211          145


Q ss_pred             CCCCCCeEE
Q 044597          233 KLPVLQVLK  241 (341)
Q Consensus       233 ~l~~L~~L~  241 (341)
                      .+++|+.|+
T Consensus       172 ~l~~L~~Ld  180 (198)
T 1ds9_A          172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCSEEC
T ss_pred             hCCCcEEEC
Confidence            566666664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=1.3e-11  Score=101.72  Aligned_cols=124  Identities=16%  Similarity=0.180  Sum_probs=80.6

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh--hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE--FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR  155 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~--i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~  155 (341)
                      ++++++ +.++++|..+ ..  +|++|++++|.+..+|..  +..+++|++|+++++.+..         .. +.. ++.
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~-~~~-~~~   76 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---------IE-PNA-FEG   76 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC---------BC-TTT-TTT
T ss_pred             CEEEcCCCCcCcCccCC-CC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC---------cC-HhH-cCC
Confidence            567776 4788888877 33  788888988888888754  7888888888888744431         11 333 777


Q ss_pred             CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEEeecCCC
Q 044597          156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFSNIELID  225 (341)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~~~~l~~  225 (341)
                      +++|++|+++++.   ...++ ..+..+++|+.|++++|     .+..+ | .+..+ ++|++|++++|.+.+
T Consensus        77 l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           77 ASHIQELQLGENK---IKEISNKMFLGLHQLKTLNLYDN-----QISCVMPGSFEHL-NSLTSLNLASNPFNC  140 (192)
T ss_dssp             CTTCCEEECCSCC---CCEECSSSSTTCTTCCEEECCSS-----CCCEECTTSSTTC-TTCCEEECTTCCBCC
T ss_pred             cccCCEEECCCCc---CCccCHHHhcCCCCCCEEECCCC-----cCCeeCHHHhhcC-CCCCEEEeCCCCccC
Confidence            7777777777764   22222 23556666666666666     55544 3 55566 666666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.17  E-value=6.9e-12  Score=101.93  Aligned_cols=128  Identities=19%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             cCCcceeeeeccC-CCCcccChhhhhcCC-CccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           72 MDQEVRLRENSII-PSLKSLPSSFLSSLL-NLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~~lp~~if~~L~-~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      +..+.+|+.|+++ +.+..+|. + ..+. +|++|++++|.+..+ ..+..+++|++|+++++.+.          .. +
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~----------~~-~   80 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC----------RI-G   80 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC----------EE-C
T ss_pred             cCCcCCceEEEeeCCCCchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc----------cc-C
Confidence            3345666777776 46666654 4 3333 777777777766666 45666777777777663332          11 2


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHH--HhcCCCCCCEEEEEeCCCCCCCCccCc-c----cccccCCccEEEEEeec
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSK--SLCRLSCLESLKLANESKMPRRSNTIL-A----EYQFPPSLTHLSFSNIE  222 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~--~l~~l~~L~~L~l~~~~e~~~~l~~lp-~----~~~lp~~L~~L~l~~~~  222 (341)
                      +..++.+++|++|++++|.   ...+|.  .+..+++|+.|++++|     .+..+| +    +..+ ++|+.|++++|.
T Consensus        81 ~~~~~~l~~L~~L~L~~N~---i~~~~~~~~l~~l~~L~~L~l~~N-----~i~~~~~~~~~~~~~l-~~L~~Ld~~~n~  151 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNS---LVELGDLDPLASLKSLTYLCILRN-----PVTNKKHYRLYVIYKV-PQVRVLDFQKVK  151 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCC---CCCGGGGGGGGGCTTCCEEECCSS-----GGGGSTTHHHHHHHHC-TTCSEETTEECC
T ss_pred             cchhhcCCCCCEEECCCCc---CCcchhhHhhhcCCCCCEEEecCC-----CCCCcHhHHHHHHHHC-CccceeCCCcCC
Confidence            2213556666666666663   223333  4555666666666665     555555 3    4455 566666665554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.16  E-value=2.4e-12  Score=124.39  Aligned_cols=226  Identities=13%  Similarity=0.084  Sum_probs=115.5

Q ss_pred             CcceeeeeccCC--CCcccChhhhhcCCCccEEecCCc-------cccccchhh------------------------cc
Q 044597           74 QEVRLRENSIIP--SLKSLPSSFLSSLLNLYTLEMPFS-------YIDHTADEF------------------------WK  120 (341)
Q Consensus        74 ~l~~Lr~L~l~~--~~~~lp~~if~~L~~L~~L~Ls~~-------~~~~lp~~i------------------------~~  120 (341)
                      .+++|++|++..  .+..+|..+ .++++|++|+++.+       .+..++..+                        ..
T Consensus       209 ~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          209 RCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             hCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            357888888863  455566666 77888888875433       122233333                        34


Q ss_pred             cccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCC-----C
Q 044597          121 MSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANES-----K  195 (341)
Q Consensus       121 L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-----e  195 (341)
                      +++|++|++++..+.         +.. +...++++++|++|++.++.  ....++.....+++|+.|++..++     .
T Consensus       288 ~~~L~~L~L~~~~l~---------~~~-l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~  355 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQ---------SYD-LVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEP  355 (594)
T ss_dssp             HTTCCEEECTTCCCC---------HHH-HHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred             hCCCCEEEccCCCCC---------HHH-HHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence            555555555542111         111 22225677888888888762  333444444557777777774310     0


Q ss_pred             CCCCCccC--ccc-ccccCCccEEEEEeecCCCCCCccCc-CCCCCCeEEEEEeC----cEee-----------------
Q 044597          196 MPRRSNTI--LAE-YQFPPSLTHLSFSNIELIDDPMPALE-KLPVLQVLKLKYLG----RKLA-----------------  250 (341)
Q Consensus       196 ~~~~l~~l--p~~-~~lp~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~----~~~~-----------------  250 (341)
                      .. .++..  ..+ ..+ ++|++|.+..+.++...+..+. .+++|+.|++.+.+    ..+.                 
T Consensus       356 ~~-~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  433 (594)
T 2p1m_B          356 NV-ALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD  433 (594)
T ss_dssp             SS-CCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred             CC-CCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence            00 11111  011 124 4555554444443322222222 24455555443110    0000                 


Q ss_pred             ---------------ecC-CCCCcccEEEEecCCCCCcee-ec-CCCCCcccEEEEecCCCCCc--cccccCCCCCCcEE
Q 044597          251 ---------------CSS-DGFPKLKVLHLKSMLWLEEWT-MG-IKAMPKLECVIINPCAHLKR--IPEQLWCLKSLNKL  310 (341)
Q Consensus       251 ---------------~~~-~~~~~L~~L~l~~~~~l~~~~-~~-~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L  310 (341)
                                     ... ..+++|+.|+++++. +.... .. ...+++|++|++++|+. +.  ++..+..+++|++|
T Consensus       434 L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          434 LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSL  511 (594)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEE
T ss_pred             ccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEE
Confidence                           000 025666666666643 32211 11 13479999999999994 43  22234568899999


Q ss_pred             EEecCC
Q 044597          311 ELWWPE  316 (341)
Q Consensus       311 ~l~~~~  316 (341)
                      ++++|+
T Consensus       512 ~l~~~~  517 (594)
T 2p1m_B          512 WMSSCS  517 (594)
T ss_dssp             EEESSC
T ss_pred             eeeCCC
Confidence            999998

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.15  E-value=1.9e-12  Score=128.06  Aligned_cols=109  Identities=15%  Similarity=0.139  Sum_probs=78.7

Q ss_pred             ccccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597           69 SPIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC  147 (341)
Q Consensus        69 ~~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~  147 (341)
                      ...+..+..|+.|+++ +.+..+|..+ .++++|++|+|++|.+..+|..++.|++|++|+|+++.+.          .+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~----------~l  285 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT----------SL  285 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS----------SC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC----------cc
Confidence            3456667778888887 4777888888 6788888888888877788888888888888888874442          23


Q ss_pred             chhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          148 STEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       148 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                       +.. ++.+++|++|++++|.   +..+|..++.+++|+.|+|++|
T Consensus       286 -p~~-~~~l~~L~~L~L~~N~---l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          286 -PAE-LGSCFQLKYFYFFDNM---VTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             -CSS-GGGGTTCSEEECCSSC---CCCCCSSTTSCTTCCCEECTTS
T ss_pred             -Chh-hcCCCCCCEEECCCCC---CCccChhhhcCCCccEEeCCCC
Confidence             444 7778888888888773   4566777888888888888877

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.15  E-value=7.3e-12  Score=121.03  Aligned_cols=216  Identities=13%  Similarity=0.120  Sum_probs=119.5

Q ss_pred             cChhhhhcCCCccEEecCCccccc--cchhhcccccCceeeecCc-----------CCCCCCceEEe-------------
Q 044597           90 LPSSFLSSLLNLYTLEMPFSYIDH--TADEFWKMSKLRYLNFGAI-----------TLPAHPGKYSL-------------  143 (341)
Q Consensus        90 lp~~if~~L~~L~~L~Ls~~~~~~--lp~~i~~L~~L~~L~l~~~-----------~lp~~i~~~~~-------------  143 (341)
                      +|..+ ..+++|++|++++|.+..  ++..+..+++|++|++++.           .. +.++.+.+             
T Consensus       281 l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          281 LPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             GGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSC
T ss_pred             HHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC-CCCCEEEEecCcccccccCCC
Confidence            44433 566677777777765332  2223456666777666651           00 11233332             


Q ss_pred             -CCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEE-----eCCCCCCCCccCc-------cccccc
Q 044597          144 -HPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLA-----NESKMPRRSNTIL-------AEYQFP  210 (341)
Q Consensus       144 -~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~-----~~~e~~~~l~~lp-------~~~~lp  210 (341)
                       .+.. +......+++|++|.+..+.. ....+......+++|+.|+++     +|.    .++..|       .+..+ 
T Consensus       359 l~~~~-l~~l~~~~~~L~~L~~~~~~l-~~~~~~~l~~~~~~L~~L~L~~~~~~~~~----~l~~~~~~~~~~~l~~~~-  431 (594)
T 2p1m_B          359 LTEQG-LVSVSMGCPKLESVLYFCRQM-TNAALITIARNRPNMTRFRLCIIEPKAPD----YLTLEPLDIGFGAIVEHC-  431 (594)
T ss_dssp             CCHHH-HHHHHHHCTTCCEEEEEESCC-CHHHHHHHHHHCTTCCEEEEEESSTTCCC----TTTCCCTHHHHHHHHHHC-
T ss_pred             CCHHH-HHHHHHhchhHHHHHHhcCCc-CHHHHHHHHhhCCCcceeEeecccCCCcc----cccCCchhhHHHHHHhhC-
Confidence             0011 222112367777776554431 112222222357888888888     333    555333       24456 


Q ss_pred             CCccEEEEEeecCCCCCCccCcC-CCCCCeEEEEEeCcEe---eecCCCCCcccEEEEecCCCCCcee--ecCCCCCccc
Q 044597          211 PSLTHLSFSNIELIDDPMPALEK-LPVLQVLKLKYLGRKL---ACSSDGFPKLKVLHLKSMLWLEEWT--MGIKAMPKLE  284 (341)
Q Consensus       211 ~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~  284 (341)
                      ++|+.|++++ .++...+..++. +++|+.|+++++....   ......+++|++|++++|+. ....  .....+++|+
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMR  509 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSS
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCC
Confidence            7888888866 444444445555 8899999995443211   11113589999999999875 4322  2234589999


Q ss_pred             EEEEecCCCCCcccccc-CCCCCCcEEEEecCC
Q 044597          285 CVIINPCAHLKRIPEQL-WCLKSLNKLELWWPE  316 (341)
Q Consensus       285 ~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~  316 (341)
                      .|++++|+.-..-...+ ..+|+|+...+....
T Consensus       510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            99999998511111223 346777766665443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=3.2e-11  Score=115.81  Aligned_cols=148  Identities=17%  Similarity=0.175  Sum_probs=110.4

Q ss_pred             ccCCcceeeeec-cC-CCCcccCh------hhhhc--CCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCce
Q 044597           71 IMDQEVRLRENS-II-PSLKSLPS------SFLSS--LLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGK  140 (341)
Q Consensus        71 ~~~~l~~Lr~L~-l~-~~~~~lp~------~if~~--L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~  140 (341)
                      .++.+.+|+.|+ ++ +.+..++.      .+ ..  ...|++|++++|.+..+|. ++.+++|++|+++++.+.     
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i-~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-----  476 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV-LKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-----  476 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-HHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-----
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccc-cccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-----
Confidence            456677777777 33 23333332      11 11  1258999999999999987 999999999999985543     


Q ss_pred             EEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC--c-ccccccCCccEEE
Q 044597          141 YSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI--L-AEYQFPPSLTHLS  217 (341)
Q Consensus       141 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l--p-~~~~lp~~L~~L~  217 (341)
                           .. |.. ++.+++|+.|++++|.   +..+| .++.+++|+.|++++|     .++.+  | .+..+ ++|+.|+
T Consensus       477 -----~l-p~~-~~~l~~L~~L~Ls~N~---l~~lp-~l~~l~~L~~L~Ls~N-----~l~~~~~p~~l~~l-~~L~~L~  539 (567)
T 1dce_A          477 -----AL-PPA-LAALRCLEVLQASDNA---LENVD-GVANLPRLQELLLCNN-----RLQQSAAIQPLVSC-PRLVLLN  539 (567)
T ss_dssp             -----CC-CGG-GGGCTTCCEEECCSSC---CCCCG-GGTTCSSCCEEECCSS-----CCCSSSTTGGGGGC-TTCCEEE
T ss_pred             -----cc-chh-hhcCCCCCEEECCCCC---CCCCc-ccCCCCCCcEEECCCC-----CCCCCCCcHHHhcC-CCCCEEE
Confidence                 33 455 8999999999999985   44466 8999999999999998     78887  8 88899 9999999


Q ss_pred             EEeecCCCCCCc---cCcCCCCCCeEEE
Q 044597          218 FSNIELIDDPMP---ALEKLPVLQVLKL  242 (341)
Q Consensus       218 l~~~~l~~~~~~---~l~~l~~L~~L~l  242 (341)
                      +++|.++..+..   .+..+|+|+.|++
T Consensus       540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          540 LQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999997554332   1334889998863

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.11  E-value=1.9e-11  Score=120.93  Aligned_cols=117  Identities=16%  Similarity=0.086  Sum_probs=96.1

Q ss_pred             cChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecc
Q 044597           90 LPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLS  169 (341)
Q Consensus        90 lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  169 (341)
                      +|...|..+++|++|+|++|.+..+|..+..+++|++|+|+++.+.          .. +.. ++++++|++|++++|. 
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~----------~l-p~~-~~~l~~L~~L~Ls~N~-  281 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT----------EL-PAE-IKNLSNLRVLDLSHNR-  281 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS----------CC-CGG-GGGGTTCCEEECTTSC-
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc----------cc-Chh-hhCCCCCCEEeCcCCc-
Confidence            3344449999999999999999999999999999999999985443          33 555 8999999999999985 


Q ss_pred             hhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCC
Q 044597          170 YYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDP  227 (341)
Q Consensus       170 ~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~  227 (341)
                        +..+|..++.+++|+.|+|++|     .++.+| .++.+ ++|+.|+|++|.++...
T Consensus       282 --l~~lp~~~~~l~~L~~L~L~~N-----~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          282 --LTSLPAELGSCFQLKYFYFFDN-----MVTTLPWEFGNL-CNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             --CSSCCSSGGGGTTCSEEECCSS-----CCCCCCSSTTSC-TTCCCEECTTSCCCSHH
T ss_pred             --CCccChhhcCCCCCCEEECCCC-----CCCccChhhhcC-CCccEEeCCCCccCCCC
Confidence              4477888999999999999998     888999 88999 99999999999976543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.08  E-value=6.1e-11  Score=97.76  Aligned_cols=120  Identities=17%  Similarity=0.169  Sum_probs=91.3

Q ss_pred             cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchh-hhhCCCCCCceEEEEeecchhhhHHHHHhc
Q 044597          102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTE-EILGRLPNLQNLRIWGDLSYYQSLLSKSLC  180 (341)
Q Consensus       102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~  180 (341)
                      ++++++++.+..+|..+..  +|++|+++++.+.          .. ++ ..++.+++|++|+++++..  ....|..+.
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~----------~~-~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~   75 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELG----------RI-SSDGLFGRLPHLVKLELKRNQL--TGIEPNAFE   75 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCC----------SB-CCSCSGGGCTTCCEEECCSSCC--CCBCTTTTT
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCC----------cc-CCccccccCCCCCEEECCCCCC--CCcCHhHcC
Confidence            7899999999999987754  8999999984443          22 21 1177888999999988852  222356688


Q ss_pred             CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                      .+++|+.|++++|     .++.++  .+..+ ++|++|++++|.++......++.+++|++|++
T Consensus        76 ~l~~L~~L~Ls~N-----~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           76 GASHIQELQLGEN-----KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TCTTCCEEECCSC-----CCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CcccCCEEECCCC-----cCCccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            8888999998888     777776  57788 88888998888876666667778888888877

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.08  E-value=1.7e-10  Score=93.65  Aligned_cols=123  Identities=16%  Similarity=0.198  Sum_probs=70.6

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL  156 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l  156 (341)
                      +.+++. +.+..+|..+   .++|++|++++|.+..+|.. +..+++|++|+++++.+.          .. ++..++.+
T Consensus        10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~-~~~~~~~l   75 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------SL-PDGVFDKL   75 (177)
T ss_dssp             TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----------CC-CTTTTTTC
T ss_pred             CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce----------Ee-ChhHccCC
Confidence            445554 4667777655   35777888888777777653 467777777777763332          11 22215566


Q ss_pred             CCCceEEEEeecchhhhHHHH-HhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCC
Q 044597          157 PNLQNLRIWGDLSYYQSLLSK-SLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELI  224 (341)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~  224 (341)
                      ++|++|+++++.   ...++. .+..+++|+.|++++|     .++.+|  .+..+ ++|++|++++|.+.
T Consensus        76 ~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           76 TKLTILYLHENK---LQSLPNGVFDKLTQLKELALDTN-----QLKSVPDGIFDRL-TSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCSCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred             CccCEEECCCCC---ccccCHHHhhCCcccCEEECcCC-----cceEeCHHHhcCC-cccCEEEecCCCee
Confidence            666666666653   222222 2455566666666655     555555  23455 56666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.08  E-value=3.8e-11  Score=97.50  Aligned_cols=130  Identities=14%  Similarity=0.087  Sum_probs=98.0

Q ss_pred             hcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC-cEeeec-CCCC
Q 044597          179 LCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG-RKLACS-SDGF  256 (341)
Q Consensus       179 l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~~~  256 (341)
                      +..+.+|+.|++++|     .++.+|.+..++++|+.|++++|.++..  +.++.+++|++|+++.+. ...+.. ...+
T Consensus        15 ~~~~~~L~~L~l~~n-----~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           15 YTNAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             EECTTSCEEEECTTS-----CCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             cCCcCCceEEEeeCC-----CCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            456778888888887     7777774444425899999999887543  678888999999884333 222222 2568


Q ss_pred             CcccEEEEecCCCCCceee--cCCCCCcccEEEEecCCCCCccccc----cCCCCCCcEEEEecCCh
Q 044597          257 PKLKVLHLKSMLWLEEWTM--GIKAMPKLECVIINPCAHLKRIPEQ----LWCLKSLNKLELWWPEP  317 (341)
Q Consensus       257 ~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~lp~~----l~~l~~L~~L~l~~~~~  317 (341)
                      ++|++|+++++ .+..++.  ..+.+++|+.|++.+|+ +..+|..    +..+++|+.|+++++..
T Consensus        88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            89999999984 5677665  56689999999999999 7788875    78899999999999983

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.07  E-value=1.5e-10  Score=95.54  Aligned_cols=118  Identities=19%  Similarity=0.160  Sum_probs=90.6

Q ss_pred             cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHH-HHhc
Q 044597          102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLS-KSLC  180 (341)
Q Consensus       102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~  180 (341)
                      ++++++++.+..+|..+.  ++|++|+++++.+.          .. +.. +..+++|++|+++++.   +..++ ..+.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~----------~i-p~~-~~~l~~L~~L~Ls~N~---i~~i~~~~f~   75 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT----------LV-PKE-LSNYKHLTLIDLSNNR---ISTLSNQSFS   75 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC----------SC-CGG-GGGCTTCCEEECCSSC---CCCCCTTTTT
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc----------hh-HHH-hhcccCCCEEECCCCc---CCEeCHhHcc
Confidence            678999999999997664  68999999985443          33 444 8888899999998885   22333 4578


Q ss_pred             CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                      ++++|+.|++++|     .++.++  .+..+ ++|+.|++++|.++..+...+..+++|+.|++
T Consensus        76 ~l~~L~~L~Ls~N-----~l~~i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           76 NMTQLLTLILSYN-----RLRCIPPRTFDGL-KSLRLLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             TCTTCCEEECCSS-----CCCBCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCCEEECCCC-----ccCEeCHHHhCCC-CCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence            8888888888888     777776  57788 88888888888876656556777888888877

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.99  E-value=9.5e-12  Score=103.11  Aligned_cols=129  Identities=17%  Similarity=0.159  Sum_probs=102.2

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      .+..+.+|++|+++ +.+..+| .+ +++++|++|++++|.+..+|..+..+++|++|+++++.+.           . +
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-----------~-l  108 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-----------S-L  108 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-----------C-H
T ss_pred             HHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-----------c-C
Confidence            55668899999998 5788888 67 9999999999999999999998899999999999984443           1 5


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc------------ccccccCCccEEE
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL------------AEYQFPPSLTHLS  217 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp------------~~~~lp~~L~~L~  217 (341)
                      +. ++.+++|++|++++|.......+ ..+..+++|+.|++++|     .+...+            .+..+ ++|+.|+
T Consensus       109 ~~-~~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N-----~l~~~~~~~~~~~~~~~~~~~~l-~~L~~Ld  180 (198)
T 1ds9_A          109 SG-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN-----PLYNDYKENNATSEYRIEVVKRL-PNLKKLD  180 (198)
T ss_dssp             HH-HHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSC-----HHHHHHHTTTTHHHHHHHHHHHC-SSCSEEC
T ss_pred             Cc-cccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCC-----ccccccccccchHHHHHHHHHhC-CCcEEEC
Confidence            56 88899999999999853322222 47899999999999987     554331            25678 8999886


Q ss_pred             EEeecC
Q 044597          218 FSNIEL  223 (341)
Q Consensus       218 l~~~~l  223 (341)
                        ++.+
T Consensus       181 --~~~i  184 (198)
T 1ds9_A          181 --GMPV  184 (198)
T ss_dssp             --CGGG
T ss_pred             --Cccc
Confidence              5554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.98  E-value=7.6e-10  Score=89.75  Aligned_cols=120  Identities=16%  Similarity=0.164  Sum_probs=86.5

Q ss_pred             ccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHH-Hh
Q 044597          101 LYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSK-SL  179 (341)
Q Consensus       101 L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l  179 (341)
                      .+.++++++.+..+|..+.  ++|++|+++++.+.          .. ++..++.+++|++|+++++.   ...++. .+
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~----------~~-~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~   72 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ----------SL-PHGVFDKLTQLTKLSLSQNQ---IQSLPDGVF   72 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCC----------CC-CTTTTTTCTTCSEEECCSSC---CCCCCTTTT
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCccc----------Ee-CHHHhcCcccccEEECCCCc---ceEeChhHc
Confidence            5678999999999986554  78999999984443          22 22227788888888888874   333333 35


Q ss_pred             cCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          180 CRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       180 ~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                      ..+++|+.|++++|     .++.+|  .+..+ ++|++|++++|.++..+...+..+++|++|++
T Consensus        73 ~~l~~L~~L~l~~N-----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           73 DKLTKLTILYLHEN-----KLQSLPNGVFDKL-TQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCccCEEECCCC-----CccccCHHHhhCC-cccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            77888888888887     777776  46677 88888888888876555545667777777777

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.92  E-value=2.1e-08  Score=92.14  Aligned_cols=219  Identities=13%  Similarity=0.115  Sum_probs=138.0

Q ss_pred             eeeeeccCCCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597           77 RLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL  156 (341)
Q Consensus        77 ~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l  156 (341)
                      .|+.+.+.+.+..++...|.++++|+.++++.|.+..+|...-...+|+.+.+..       ....++...     +..+
T Consensus       158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-------~l~~I~~~a-----F~~~  225 (401)
T 4fdw_A          158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-------TLKEIGSQA-----FLKT  225 (401)
T ss_dssp             CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-------TCCEECTTT-----TTTC
T ss_pred             CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-------chheehhhH-----hhCC
Confidence            4555555556666666666666667777776666666665433346666666543       111111222     8889


Q ss_pred             CCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCC-----CCCC
Q 044597          157 PNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELI-----DDPM  228 (341)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~-----~~~~  228 (341)
                      ++|+.+.+..+-    ..+. ..+.+ .+|+.+.+..      .+..++  .+..+ ++|+.+.+.++.+.     ....
T Consensus       226 ~~L~~l~l~~~l----~~I~~~aF~~-~~L~~i~lp~------~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~  293 (401)
T 4fdw_A          226 SQLKTIEIPENV----STIGQEAFRE-SGITTVKLPN------GVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHP  293 (401)
T ss_dssp             TTCCCEECCTTC----CEECTTTTTT-CCCSEEEEET------TCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECT
T ss_pred             CCCCEEecCCCc----cCcccccccc-CCccEEEeCC------CccEEChhHhhCC-CCCCEEEeCCccccCCcccEECH
Confidence            999999887531    2222 23444 7899999954      567776  66778 89999999988753     2344


Q ss_pred             ccCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCcccc-ccCCCC
Q 044597          229 PALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPE-QLWCLK  305 (341)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~-~l~~l~  305 (341)
                      .+|..+++|+.+.+...-..+. ....++++|+.+.+..  +++.+.... ..+ +|+.+.+.++. ...++. .+.+++
T Consensus       294 ~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~  369 (401)
T 4fdw_A          294 YCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFP  369 (401)
T ss_dssp             TTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSC
T ss_pred             HHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCC
Confidence            5788899999998832111221 2345678899999964  466665432 245 89999999886 555543 344554


Q ss_pred             -CCcEEEEecCChHHHHHhhhc
Q 044597          306 -SLNKLELWWPEPKLRQQLWEF  326 (341)
Q Consensus       306 -~L~~L~l~~~~~~~~~~~~~~  326 (341)
                       +++.|.+-..   -.+.++..
T Consensus       370 ~~l~~l~vp~~---~~~~y~~a  388 (401)
T 4fdw_A          370 DDITVIRVPAE---SVEKYKNA  388 (401)
T ss_dssp             TTCCEEEECGG---GHHHHHHS
T ss_pred             CCccEEEeCHH---HHHHhhhc
Confidence             6788877553   45566653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=6.2e-09  Score=93.06  Aligned_cols=220  Identities=10%  Similarity=0.030  Sum_probs=125.6

Q ss_pred             cceeeeeccCCCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCC-Ccchhhh
Q 044597           75 EVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHP-CCSTEEI  152 (341)
Q Consensus        75 l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~~~~~~  152 (341)
                      +.+|+.+.+..+++.+++..|..+++|+.|+++.|.+..++. .|..+.++.++.+....       ..... ...... 
T Consensus       100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~-------~~~~~~~i~~~~-  171 (329)
T 3sb4_A          100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD-------AYRFKNRWEHFA-  171 (329)
T ss_dssp             CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH-------HHHTSTTTTTSC-
T ss_pred             cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh-------hhhccccccccc-
Confidence            677777777667777777766777777777777776666643 35555555555443200       00000 000011 


Q ss_pred             hCCCCCCc-eEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCccc-ccccCCccEEEEEeecCCCCCCcc
Q 044597          153 LGRLPNLQ-NLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAE-YQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       153 l~~l~~L~-~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~-~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      +..+.+|+ .+.+.... .....+...-....++..+.+.+..    ....+..+ ..+ ++|+.+++.+|.++..+..+
T Consensus       172 f~~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l----~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~~~a  245 (329)
T 3sb4_A          172 FIEGEPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKL----DNADFKLIRDYM-PNLVSLDISKTNATTIPDFT  245 (329)
T ss_dssp             EEESCCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECC----CHHHHHHHHHHC-TTCCEEECTTBCCCEECTTT
T ss_pred             cccccccceeEEecCCC-cHHHHHhhcccCccccceEEEeeee----cHHHHHHHHHhc-CCCeEEECCCCCcceecHhh
Confidence            33445555 34333221 0111111222245666777776531    11111111 125 78888888888776666667


Q ss_pred             CcCCCCCCeEEEEEeCcEee-ecCCCCCccc-EEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCcccc-ccCCCCC
Q 044597          231 LEKLPVLQVLKLKYLGRKLA-CSSDGFPKLK-VLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPE-QLWCLKS  306 (341)
Q Consensus       231 l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~  306 (341)
                      |..+++|+.+.+..+-..+. ....++++|+ .+.+.+  .++.+... ...+++|+.+.+.++. ++.++. .+.++++
T Consensus       246 F~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~  322 (329)
T 3sb4_A          246 FAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVP  322 (329)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCC
T ss_pred             hhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcc
Confidence            88888888888822222222 2345677888 888876  56666533 3457889999987776 777765 5677888


Q ss_pred             CcEEE
Q 044597          307 LNKLE  311 (341)
Q Consensus       307 L~~L~  311 (341)
                      |+.+.
T Consensus       323 L~~ly  327 (329)
T 3sb4_A          323 SKLIY  327 (329)
T ss_dssp             CCEEE
T ss_pred             hhhhc
Confidence            98875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.81  E-value=3e-09  Score=86.08  Aligned_cols=50  Identities=18%  Similarity=0.164  Sum_probs=34.9

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~  131 (341)
                      +.++++ +.+..+|..+ .  ++|++|+|++|.+..+ |..+..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~~-~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   66 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-P--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS   66 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCc-C--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC
Confidence            456665 4677777766 3  7778888888877776 44567777777777776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.80  E-value=3.4e-09  Score=85.43  Aligned_cols=50  Identities=18%  Similarity=0.196  Sum_probs=33.5

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~  131 (341)
                      +.++++ +.+..+|..+ .  ++|++|+|++|.+..+ |..+..+++|++|++++
T Consensus        12 ~~l~~s~n~l~~ip~~~-~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~   63 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-P--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN   63 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CEEEeCCCCcCccCccC-C--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC
Confidence            456665 4677777666 2  6677777777777766 44566677777777766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.80  E-value=3.9e-09  Score=85.40  Aligned_cols=62  Identities=26%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHH-hcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecC
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKS-LCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l  223 (341)
                      ++.+++|++|++++|.   +..+|.. +..+++|+.|++++|     .+..+|  .+..+ ++|++|++++|.+
T Consensus        53 ~~~l~~L~~L~Ls~N~---l~~i~~~~~~~l~~L~~L~L~~N-----~l~~l~~~~~~~l-~~L~~L~L~~N~~  117 (174)
T 2r9u_A           53 FDHLVNLQQLYFNSNK---LTAIPTGVFDKLTQLTQLDLNDN-----HLKSIPRGAFDNL-KSLTHIYLYNNPW  117 (174)
T ss_dssp             TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCSEEECCSSCB
T ss_pred             hcCCcCCCEEECCCCC---CCccChhHhCCcchhhEEECCCC-----ccceeCHHHhccc-cCCCEEEeCCCCc
Confidence            4445555555555442   2223222 344455555555544     444444  24444 4555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.76  E-value=4.8e-09  Score=84.50  Aligned_cols=56  Identities=14%  Similarity=0.199  Sum_probs=26.0

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecC
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGA  131 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~  131 (341)
                      .++++|+++ +.+..++...|+++++|++|+|++|.+..+|.. +..+++|++|++++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            344444444 344444333225555555555555544444433 24455555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=3.7e-09  Score=95.61  Aligned_cols=132  Identities=23%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             HHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCc--CCCCCCeEEEEEe----CcE--
Q 044597          177 KSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALE--KLPVLQVLKLKYL----GRK--  248 (341)
Q Consensus       177 ~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~----~~~--  248 (341)
                      ..+..+++|+.|.++++     ....++.+ .+ ++|++|.+..|.+....+..+.  .+|+|+.|+|...    +..  
T Consensus       166 ~ll~~~P~L~~L~L~g~-----~~l~l~~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~  238 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGT-----NNLSIGKK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD  238 (362)
T ss_dssp             HHHHTCTTCCEEEEECC-----BTCBCCSC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred             HHHhcCCCCcEEEEeCC-----CCceeccc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence            33445566666666554     11122311 24 5666666666655433333333  5666666666210    000  


Q ss_pred             e-----eecCCCCCcccEEEEecCCCCCce---eecCCCCCcccEEEEecCCCCCc-----cccccCCCCCCcEEEEecC
Q 044597          249 L-----ACSSDGFPKLKVLHLKSMLWLEEW---TMGIKAMPKLECVIINPCAHLKR-----IPEQLWCLKSLNKLELWWP  315 (341)
Q Consensus       249 ~-----~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~~  315 (341)
                      .     ......||+|+.|.+.+|......   ......+|+|++|+++.|. ++.     ++.++.++++|+.|++++|
T Consensus       239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence            0     111235788888888775432111   1122457888888887665 544     3444556778888888877


Q ss_pred             C
Q 044597          316 E  316 (341)
Q Consensus       316 ~  316 (341)
                      .
T Consensus       318 ~  318 (362)
T 2ra8_A          318 Y  318 (362)
T ss_dssp             B
T ss_pred             c
Confidence            5

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.53  E-value=7.8e-07  Score=81.60  Aligned_cols=209  Identities=11%  Similarity=0.128  Sum_probs=131.8

Q ss_pred             eeeeeccCCCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCC
Q 044597           77 RLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGR  155 (341)
Q Consensus        77 ~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~  155 (341)
                      +|+.+.+.++++.++...|.+. +|+.+.+.. .+..++ ..|..+.+|+.+++..+.+.          .. +..++. 
T Consensus       136 ~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~----------~I-~~~aF~-  201 (401)
T 4fdw_A          136 QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT----------KL-PASTFV-  201 (401)
T ss_dssp             CCSEEECCTTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS----------EE-CTTTTT-
T ss_pred             CccEEEeCCCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce----------Ee-chhhEe-
Confidence            5666666666777777666663 577777765 445553 35677777777777652221          11 111144 


Q ss_pred             CCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCCccCcC
Q 044597          156 LPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPMPALEK  233 (341)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  233 (341)
                      ..+|+.+.+..+    ...++ ..+.++++|+.+.+..      .+..++ ....- .+|+.+.+.++ +......+|..
T Consensus       202 ~~~L~~l~lp~~----l~~I~~~aF~~~~~L~~l~l~~------~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~  269 (401)
T 4fdw_A          202 YAGIEEVLLPVT----LKEIGSQAFLKTSQLKTIEIPE------NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYY  269 (401)
T ss_dssp             TCCCSEEECCTT----CCEECTTTTTTCTTCCCEECCT------TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTT
T ss_pred             ecccCEEEeCCc----hheehhhHhhCCCCCCEEecCC------CccCcccccccc-CCccEEEeCCC-ccEEChhHhhC
Confidence            467777777532    22222 3467788888888865      455565 22223 57888888543 44555667889


Q ss_pred             CCCCCeEEEEEeCc-------EeeecCCCCCcccEEEEecCCCCCceeecC-CCCCcccEEEEecCCCCCcccc-ccCCC
Q 044597          234 LPVLQVLKLKYLGR-------KLACSSDGFPKLKVLHLKSMLWLEEWTMGI-KAMPKLECVIINPCAHLKRIPE-QLWCL  304 (341)
Q Consensus       234 l~~L~~L~l~~~~~-------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~-~l~~l  304 (341)
                      +++|+.+.+.....       .......++++|+.+.+.+  .++.+.... ..+++|+.+.+.++  ++.++. .+.++
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~  345 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT  345 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC
Confidence            99999999822111       1122345778899999874  466665432 34788999999554  677654 45678


Q ss_pred             CCCcEEEEecCC
Q 044597          305 KSLNKLELWWPE  316 (341)
Q Consensus       305 ~~L~~L~l~~~~  316 (341)
                       +|+.+.+.++.
T Consensus       346 -~L~~l~l~~n~  356 (401)
T 4fdw_A          346 -GIKEVKVEGTT  356 (401)
T ss_dssp             -CCCEEEECCSS
T ss_pred             -CCCEEEEcCCC
Confidence             99999999865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.48  E-value=9.7e-08  Score=85.80  Aligned_cols=97  Identities=20%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             eccC-C-CCcccChhhhhcCCCccEEecCC-ccccccc-hhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597           81 NSII-P-SLKSLPSSFLSSLLNLYTLEMPF-SYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL  156 (341)
Q Consensus        81 L~l~-~-~~~~lp~~if~~L~~L~~L~Ls~-~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l  156 (341)
                      ++.+ . .+..+|. + ..+++|++|+|++ |.+..+| ..|..|++|++|+|+++.+-          .. ++..++++
T Consensus        13 v~~~~~n~l~~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~----------~~-~~~~~~~l   79 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR----------FV-APDAFHFT   79 (347)
T ss_dssp             EECCSSCCCTTTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC----------EE-CTTGGGSC
T ss_pred             EEcCCCCCCCccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc----------ee-CHHHhcCC
Confidence            4554 3 6889999 7 9999999999996 8999987 46899999999999985443          22 33227889


Q ss_pred             CCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          157 PNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                      ++|+.|++++|.   +..+|..+.....|+.|++.+|
T Consensus        80 ~~L~~L~l~~N~---l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           80 PRLSRLNLSFNA---LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SCCCEEECCSSC---CSCCCSTTTCSCCCCEEECCSS
T ss_pred             cCCCEEeCCCCc---cceeCHHHcccCCceEEEeeCC
Confidence            999999998884   4445544333333888888876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.41  E-value=1.3e-07  Score=84.92  Aligned_cols=85  Identities=25%  Similarity=0.193  Sum_probs=69.5

Q ss_pred             cCCcceeeeeccC--CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcc
Q 044597           72 MDQEVRLRENSII--PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCS  148 (341)
Q Consensus        72 ~~~l~~Lr~L~l~--~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~  148 (341)
                      +..+.+|+.|+++  +.+..+|...|++|++|++|+|++|.+..+|. .|..|++|++|+|+++.+-          .. 
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~----------~~-   95 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE----------SL-   95 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS----------CC-
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc----------ee-
Confidence            8888999999996  58899997666999999999999999988865 6799999999999995443          22 


Q ss_pred             hhhhhCCCCCCceEEEEeec
Q 044597          149 TEEILGRLPNLQNLRIWGDL  168 (341)
Q Consensus       149 ~~~~l~~l~~L~~L~l~~~~  168 (341)
                      ++..+..++ |+.|++.+|.
T Consensus        96 ~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           96 SWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             CSTTTCSCC-CCEEECCSSC
T ss_pred             CHHHcccCC-ceEEEeeCCC
Confidence            333155555 9999999886

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.37  E-value=2.9e-08  Score=90.20  Aligned_cols=151  Identities=15%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             ceeeeeccC-CCCcccChhhhh-----cCCCccEEecCCcccccc--chhhcccccCceeeecCcCCCCCCceEEeCCCc
Q 044597           76 VRLRENSII-PSLKSLPSSFLS-----SLLNLYTLEMPFSYIDHT--ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCC  147 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~-----~L~~L~~L~Ls~~~~~~l--p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~  147 (341)
                      .+++.|+++ +.+.......|.     ..++|++|+|++|.+..-  ..-...+++|++|+++++.+..         ..
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~---------~~  142 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP---------EA  142 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH---------HH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH---------HH
Confidence            467788887 455443222112     236899999999976532  2223456788999998844421         11


Q ss_pred             chhh---hh-CCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-----c-ccccccCCccE
Q 044597          148 STEE---IL-GRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-----L-AEYQFPPSLTH  215 (341)
Q Consensus       148 ~~~~---~l-~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-----p-~~~~lp~~L~~  215 (341)
                       ...   ++ ...++|++|++++|...  ....++..+...++|++|++++|     .++..     + .+... ++|+.
T Consensus       143 -~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-----~l~~~g~~~L~~~L~~~-~~L~~  215 (372)
T 3un9_A          143 -CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-----GLGDEGLELLAAQLDRN-RQLQE  215 (372)
T ss_dssp             -HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-----SCHHHHHHHHHHHGGGC-SCCCE
T ss_pred             -HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-----CCCcHHHHHHHHHHhcC-CCcCe
Confidence             122   12 35678899998888632  24556667778888999988887     55532     3 34455 68888


Q ss_pred             EEEEeecCCCCCCcc----CcCCCCCCeEEE
Q 044597          216 LSFSNIELIDDPMPA----LEKLPVLQVLKL  242 (341)
Q Consensus       216 L~l~~~~l~~~~~~~----l~~l~~L~~L~l  242 (341)
                      |++++|.++......    +...++|++|++
T Consensus       216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          216 LNVAYNGAGDTAALALARAAREHPSLELLHL  246 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence            888888864432222    233456666666

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=1.1e-06  Score=78.32  Aligned_cols=197  Identities=14%  Similarity=0.002  Sum_probs=130.1

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCcc----cccc-chhhcccccCc-eeeecC-cCCCCCCceE
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSY----IDHT-ADEFWKMSKLR-YLNFGA-ITLPAHPGKY  141 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~----~~~l-p~~i~~L~~L~-~L~l~~-~~lp~~i~~~  141 (341)
                      ..+..+.+|+.+++. +.+..+++..|..+.++.++.+..+.    ...+ +..+..+.+|+ .+.+.. ..+|      
T Consensus       118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~------  191 (329)
T 3sb4_A          118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE------  191 (329)
T ss_dssp             TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH------
T ss_pred             HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH------
Confidence            457889999999998 57889999988999999988887742    1222 12344555665 444432 1111      


Q ss_pred             EeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEE
Q 044597          142 SLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFS  219 (341)
Q Consensus       142 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~  219 (341)
                          .. ...+--...++..+.+.+.-  ...........+++|+.++++.+     .+..+|  .+..+ .+|+.+.+.
T Consensus       192 ----~~-~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n-----~i~~I~~~aF~~~-~~L~~l~l~  258 (329)
T 3sb4_A          192 ----DE-IMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKT-----NATTIPDFTFAQK-KYLLKIKLP  258 (329)
T ss_dssp             ----HH-HHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTB-----CCCEECTTTTTTC-TTCCEEECC
T ss_pred             ----HH-HhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCC-----CcceecHhhhhCC-CCCCEEECC
Confidence                00 00101235667788877653  22222222234799999999987     788888  67788 999999999


Q ss_pred             eecCCCCCCccCcCCCCCC-eEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEE
Q 044597          220 NIELIDDPMPALEKLPVLQ-VLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVI  287 (341)
Q Consensus       220 ~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~  287 (341)
                      ++ +......+|..+++|+ .+.+...-..+. ....++++|+.+++.+ +.++.++.. ...+++|+.+.
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             cc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            87 5666667899999999 999933222222 3456788999999876 567777643 33466777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.09  E-value=1.6e-06  Score=78.19  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=34.0

Q ss_pred             CCCcccEEEEecCCCCCce-----eecCCCCCcccEEEEecCCCCCccccccCCCCC--CcEEEEecCC
Q 044597          255 GFPKLKVLHLKSMLWLEEW-----TMGIKAMPKLECVIINPCAHLKRIPEQLWCLKS--LNKLELWWPE  316 (341)
Q Consensus       255 ~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~--L~~L~l~~~~  316 (341)
                      .+|+|++|+++. +.+...     ......+++|+.|++++|. +..-  ++..+..  ...+++++..
T Consensus       277 ~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~--~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          277 ILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDE--MKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             SGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHH--HHHHHHHHCCSEEECCSBC
T ss_pred             cCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHH--HHHHHHHHcCCEEEecCCc
Confidence            578888888865 445542     2222357899999998886 4431  1111111  2457777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.06  E-value=2.9e-07  Score=83.57  Aligned_cols=144  Identities=19%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             cceeeeeccC-CCCccc-ChhhhhcCCCccEEecCCccccccc-hhh-----cccccCceeeecCcCCCCCCceEEeCC-
Q 044597           75 EVRLRENSII-PSLKSL-PSSFLSSLLNLYTLEMPFSYIDHTA-DEF-----WKMSKLRYLNFGAITLPAHPGKYSLHP-  145 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~~l-p~~if~~L~~L~~L~Ls~~~~~~lp-~~i-----~~L~~L~~L~l~~~~lp~~i~~~~~~~-  145 (341)
                      ..+|+.|+++ +.+..- ...++..+++|++|+|++|.+.... ..+     ...++|++|+++++.+..       .+ 
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-------~~~  172 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA-------AGV  172 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH-------HHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh-------HHH
Confidence            3689999998 455421 2233356778999999999775432 222     246789999999843321       00 


Q ss_pred             CcchhhhhCCCCCCceEEEEeecch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-----c-ccccccCCccEEE
Q 044597          146 CCSTEEILGRLPNLQNLRIWGDLSY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-----L-AEYQFPPSLTHLS  217 (341)
Q Consensus       146 ~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-----p-~~~~lp~~L~~L~  217 (341)
                      .. +..++..+++|++|++++|...  ....++..+...++|+.|++++|     .++..     + .+... ++|++|+
T Consensus       173 ~~-l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-----~i~~~g~~~l~~~L~~~-~~L~~L~  245 (372)
T 3un9_A          173 AV-LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-----GAGDTAALALARAAREH-PSLELLH  245 (372)
T ss_dssp             HH-HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-----CCCHHHHHHHHHHHHHC-SSCCEEE
T ss_pred             HH-HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-----CCCHHHHHHHHHHHHhC-CCCCEEe
Confidence            11 2222678999999999998733  24466778888999999999998     66543     2 33456 7899999


Q ss_pred             EEeecCCCCCCccCc
Q 044597          218 FSNIELIDDPMPALE  232 (341)
Q Consensus       218 l~~~~l~~~~~~~l~  232 (341)
                      +++|.++......+.
T Consensus       246 Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          246 LYFNELSSEGRQVLR  260 (372)
T ss_dssp             CTTSSCCHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHH
Confidence            999997655444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=2.9e-06  Score=67.98  Aligned_cols=83  Identities=11%  Similarity=0.128  Sum_probs=47.2

Q ss_pred             CccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec-CCC----CCcccEE
Q 044597          212 SLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKA----MPKLECV  286 (341)
Q Consensus       212 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~----l~~L~~L  286 (341)
                      .|+.|++++|.++...+..+..                      +++|++|++++|..+++.... ++.    .++|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~----------------------~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L  119 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEG----------------------LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEM  119 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTT----------------------CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEE
T ss_pred             eEeEEeCcCCCccHHHHHHhcC----------------------CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEE
Confidence            6788888887765555444444                      455555555555555443211 111    2457777


Q ss_pred             EEecCCCCCccc-cccCCCCCCcEEEEecCC
Q 044597          287 IINPCAHLKRIP-EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       287 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  316 (341)
                      ++++|++++.-. ..+.++++|++|++++|+
T Consensus       120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             EEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             EcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            777776665511 134556777777777776

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.88  E-value=3.9e-05  Score=70.03  Aligned_cols=144  Identities=17%  Similarity=0.158  Sum_probs=86.0

Q ss_pred             CCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccC
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPAL  231 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l  231 (341)
                      ...+|+.+.+....    ..+. ..+..+..|+.+.+..+      ...++  .+... ..++.+......+   .-..+
T Consensus       228 ~~~~l~~i~ip~~~----~~i~~~~f~~~~~l~~~~~~~~------~~~i~~~~F~~~-~~l~~~~~~~~~i---~~~~F  293 (394)
T 4fs7_A          228 SKTGVKNIIIPDSF----TELGKSVFYGCTDLESISIQNN------KLRIGGSLFYNC-SGLKKVIYGSVIV---PEKTF  293 (394)
T ss_dssp             TTCCCCEEEECTTC----CEECSSTTTTCSSCCEEEECCT------TCEECSCTTTTC-TTCCEEEECSSEE---CTTTT
T ss_pred             ccCCCceEEECCCc----eecccccccccccceeEEcCCC------cceeeccccccc-cccceeccCceee---ccccc
Confidence            34567777665421    1111 23567788888888653      33343  44455 6777777655443   22356


Q ss_pred             cCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCcccc-ccCCCCCCc
Q 044597          232 EKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPE-QLWCLKSLN  308 (341)
Q Consensus       232 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~  308 (341)
                      ..+.+|+.+.+...-..+. .....+.+|+.+.+..  .++.+... ...+++|+.+.+...  ++.++. .+.++++|+
T Consensus       294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCC
T ss_pred             cccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCC
Confidence            7788888888721111121 2234677888888853  45565433 234678888888543  666654 467789999


Q ss_pred             EEEEecCC
Q 044597          309 KLELWWPE  316 (341)
Q Consensus       309 ~L~l~~~~  316 (341)
                      .+.+...-
T Consensus       370 ~i~lp~~~  377 (394)
T 4fs7_A          370 KVELPKRL  377 (394)
T ss_dssp             EEEEEGGG
T ss_pred             EEEECCCC
Confidence            99886543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.87  E-value=7.4e-05  Score=68.18  Aligned_cols=231  Identities=12%  Similarity=0.092  Sum_probs=127.2

Q ss_pred             cccCCcceeeeeccCCCCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecC--cCCCCCC------ce
Q 044597           70 PIMDQEVRLRENSIIPSLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGA--ITLPAHP------GK  140 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~--~~lp~~i------~~  140 (341)
                      ..+..+.+|+.+.+.++++.+++..|.++.+|+.+++..+ +..++ ..+..+.+|+.+.+..  ..+....      ..
T Consensus        65 ~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred             HHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence            3567788899999877899998888899999999999765 44453 3567777777766543  1111110      11


Q ss_pred             EEeCC---CcchhhhhCCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCC-CCC-----------------
Q 044597          141 YSLHP---CCSTEEILGRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESK-MPR-----------------  198 (341)
Q Consensus       141 ~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e-~~~-----------------  198 (341)
                      .....   .. ...++..+++|+.+.+....    ..+. ..+.++.+|+.+.+..+.. +..                 
T Consensus       144 ~~~~~~~~~i-~~~aF~~c~~L~~i~l~~~~----~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          144 ITIPEGVTVI-GDEAFATCESLEYVSLPDSM----ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             EECCTTCCEE-CTTTTTTCTTCCEEECCTTC----CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccCcccccc-chhhhcccCCCcEEecCCcc----ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCC
Confidence            11111   11 11126667777777665321    1111 1244455555554433110 000                 


Q ss_pred             ---------------------CCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEe-eecCC
Q 044597          199 ---------------------RSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKL-ACSSD  254 (341)
Q Consensus       199 ---------------------~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~  254 (341)
                                           ....+.  .+... ..++.+.+..+. .......+...+.++.....  .... .....
T Consensus       219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~-~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~--~~~i~~~~F~  294 (394)
T 4fs7_A          219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGC-TDLESISIQNNK-LRIGGSLFYNCSGLKKVIYG--SVIVPEKTFY  294 (394)
T ss_dssp             CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTC-SSCCEEEECCTT-CEECSCTTTTCTTCCEEEEC--SSEECTTTTT
T ss_pred             ceEeehhhcccCCCceEEECCCceeccccccccc-ccceeEEcCCCc-ceeeccccccccccceeccC--ceeecccccc
Confidence                                 111111  11223 455555555443 22233456667777777651  1111 12234


Q ss_pred             CCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCcccc-ccCCCCCCcEEEEec
Q 044597          255 GFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPE-QLWCLKSLNKLELWW  314 (341)
Q Consensus       255 ~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~  314 (341)
                      .+.+|+.+.+.+  .++.+... ...+++|+.+.+.+  .++.++. .+.++++|+.+.+..
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT
T ss_pred             cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc
Confidence            678899998864  46666533 23567899998853  3666654 456788999888754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.68  E-value=5.6e-05  Score=60.45  Aligned_cols=42  Identities=12%  Similarity=0.108  Sum_probs=23.8

Q ss_pred             ccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC
Q 044597           89 SLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        89 ~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~  131 (341)
                      .+|... ..-.+|+.||+++|.+... -..+..+++|++|+|++
T Consensus        52 ~LP~~~-~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~   94 (176)
T 3e4g_A           52 HLPTGP-LDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK   94 (176)
T ss_dssp             GSCCCS-TTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEES
T ss_pred             cCCccc-CCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCC
Confidence            445433 2334688999998865432 12345556666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.57  E-value=1.4e-05  Score=64.95  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=17.0

Q ss_pred             CCCCCCceEEEEeecc--hhhhHHHHHhcCCCCCCEEEE
Q 044597          154 GRLPNLQNLRIWGDLS--YYQSLLSKSLCRLSCLESLKL  190 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l  190 (341)
                      ...++|++|++++|..  .....+...+...++|+.|++
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence            3334455555554441  122334444555555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.43  E-value=3.7e-05  Score=62.40  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=79.8

Q ss_pred             ccCCcceeeeeccC-C-CCc-----ccChhhhhcCCCccEEecCCccccc-----cchhhcccccCceeeecCcCCCCCC
Q 044597           71 IMDQEVRLRENSII-P-SLK-----SLPSSFLSSLLNLYTLEMPFSYIDH-----TADEFWKMSKLRYLNFGAITLPAHP  138 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~-~~~-----~lp~~if~~L~~L~~L~Ls~~~~~~-----lp~~i~~L~~L~~L~l~~~~lp~~i  138 (341)
                      .+.....|+.|+++ + .+.     .+...+ ...++|++|+|++|.+..     +...+...++|++|+|+++.+-.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~--  107 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG--  107 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH--
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH--
Confidence            44556788889887 3 443     355566 788999999999997653     45556677899999999844321  


Q ss_pred             ceEEeCC-CcchhhhhCCCCCCceEEE--Eeecc--hhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          139 GKYSLHP-CCSTEEILGRLPNLQNLRI--WGDLS--YYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       139 ~~~~~~~-~~~~~~~l~~l~~L~~L~l--~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                           .+ .. +.+++...++|++|++  .++..  .....+...+...+.|+.|++++|
T Consensus       108 -----~g~~~-l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          108 -----SGILA-LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             -----HHHHH-HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             -----HHHHH-HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence                 00 11 2233777889999999  66652  234456677778889999999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.43  E-value=0.00011  Score=63.15  Aligned_cols=81  Identities=20%  Similarity=0.250  Sum_probs=53.6

Q ss_pred             hcCCCccEEecCCcccccc---chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC--CCceEEEEeecch
Q 044597           96 SSLLNLYTLEMPFSYIDHT---ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP--NLQNLRIWGDLSY  170 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~l---p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~  170 (341)
                      .++++|++|+|++|.+..+   |..+..+++|++|+|+++.+..            ..+ +..++  +|++|++.+|...
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~------------~~~-l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS------------ERE-LDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS------------GGG-GGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC------------chh-hhhcccCCcceEEccCCcCc
Confidence            5688899999999976654   4567789999999998855532            223 33333  8888888887521


Q ss_pred             h-----hhHHHHHhcCCCCCCEEE
Q 044597          171 Y-----QSLLSKSLCRLSCLESLK  189 (341)
Q Consensus       171 ~-----~~~l~~~l~~l~~L~~L~  189 (341)
                      .     .......+..+++|+.|+
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cccCcchhHHHHHHHHCcccCeEC
Confidence            1     112224466777887774

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.36  E-value=0.0027  Score=57.68  Aligned_cols=101  Identities=18%  Similarity=0.198  Sum_probs=60.0

Q ss_pred             CCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEE
Q 044597          211 PSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVII  288 (341)
Q Consensus       211 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l  288 (341)
                      .+|+.+.+.++. ....-.++..++.|+.+.+...-..+. ....++.+|+++.+..  .++.+... ...+.+|+.+.+
T Consensus       265 ~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEeccccc-ceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence            456666654433 222334566677777776621111111 2234567788888763  35555433 234678999888


Q ss_pred             ecCCCCCcccc-ccCCCCCCcEEEEecCC
Q 044597          289 NPCAHLKRIPE-QLWCLKSLNKLELWWPE  316 (341)
Q Consensus       289 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  316 (341)
                      -.  .++.++. .+.++++|+.+++.+..
T Consensus       342 p~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          342 PS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             Cc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence            53  3666654 56789999999998875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.96  E-value=0.0045  Score=55.80  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             ccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEecCCCCCceeec-CCCCCccc
Q 044597          207 YQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLE  284 (341)
Q Consensus       207 ~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~  284 (341)
                      ... .+|+.+.+..+ +......++..+.+|+.+.+...-..+. .....+++|+.+.+.+ ..++.+... ...+++|+
T Consensus       237 ~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          237 YGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCC
T ss_pred             cCC-ccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccc-cccceehhhhhcCCCCCC
Confidence            344 56666666544 2233334566667777776611111111 2234567777777764 234555432 22456677


Q ss_pred             EEEEecCCCCCcccc-ccCCCCCCcEEEEe
Q 044597          285 CVIINPCAHLKRIPE-QLWCLKSLNKLELW  313 (341)
Q Consensus       285 ~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~  313 (341)
                      .+.+-.  .++.++. .+.++++|+.+.+-
T Consensus       314 ~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          314 SVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             EEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            777643  2555543 34566777766653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.87  E-value=9.6e-05  Score=63.44  Aligned_cols=13  Identities=46%  Similarity=0.634  Sum_probs=6.2

Q ss_pred             CCccEEEEEeecC
Q 044597          211 PSLTHLSFSNIEL  223 (341)
Q Consensus       211 ~~L~~L~l~~~~l  223 (341)
                      ++|+.|+|++|.+
T Consensus       196 ~~L~~L~Ls~N~i  208 (267)
T 3rw6_A          196 PNLKILNLSGNEL  208 (267)
T ss_dssp             TTCCEEECTTSCC
T ss_pred             CCCCEEECCCCcc
Confidence            4444444444444

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.45  E-value=0.0012  Score=62.98  Aligned_cols=54  Identities=24%  Similarity=0.244  Sum_probs=39.9

Q ss_pred             HHHHHHc--CCCCCC-----cHHHHHHHHHHHHHCCCcccccCCCCCcceecccCCcchhhHHhh
Q 044597            3 YQLWIAE--GFIPDN-----NEAITEKYLEQLINGAFVDAGKRSDISRINTSSIPGSCSPALLTV   60 (341)
Q Consensus         3 i~~Wiae--G~i~~~-----~e~~g~~~l~eL~~~~~lq~~~~~~~~~i~~~~~~~~~~~~~~~~   60 (341)
                      |+.|+|+  ||+.+.     .+++|+ ||++|++++|++.+..+   +...+.||+..+.....+
T Consensus       407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~  467 (549)
T 2a5y_B          407 VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHV  467 (549)
T ss_dssp             HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTT
T ss_pred             eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHH
Confidence            6899999  999764     478888 99999999999987654   345678998888777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.11  E-value=0.0081  Score=54.49  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             CcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeec
Q 044597           87 LKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFG  130 (341)
Q Consensus        87 ~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~  130 (341)
                      +..+....|..+.+|+.+.+..+...--...+.++.+|+.+.+.
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~  296 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS  296 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ceEcccceeeecccccEEecccccceecCcccccccccccccCC
Confidence            33343444455555555555443211112234445555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.18  E-value=0.046  Score=49.06  Aligned_cols=102  Identities=12%  Similarity=0.093  Sum_probs=56.1

Q ss_pred             hCCCCCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCc
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      +..+.+|+.+.+...-    ..+. ..+.++.+|+.+.+..      .+..++  .+... .+|+.+.+.++.+......
T Consensus       236 f~~~~~L~~i~lp~~v----~~I~~~aF~~~~~l~~i~l~~------~i~~i~~~aF~~c-~~L~~i~l~~~~i~~I~~~  304 (379)
T 4h09_A          236 FYGMKALDEIAIPKNV----TSIGSFLLQNCTALKTLNFYA------KVKTVPYLLCSGC-SNLTKVVMDNSAIETLEPR  304 (379)
T ss_dssp             TTTCSSCCEEEECTTC----CEECTTTTTTCTTCCEEEECC------CCSEECTTTTTTC-TTCCEEEECCTTCCEECTT
T ss_pred             ccCCccceEEEcCCCc----cEeCccccceeehhccccccc------cceeccccccccc-cccccccccccccceehhh
Confidence            5566666666664321    1111 2355667777777754      445555  45566 7788888877665444455


Q ss_pred             cCcCCCCCCeEEEEEeCcEee-ecCCCCCcccEEEEe
Q 044597          230 ALEKLPVLQVLKLKYLGRKLA-CSSDGFPKLKVLHLK  265 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~  265 (341)
                      +|..+.+|+.+.+...-..+. .....+.+|+++.+.
T Consensus       305 aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred             hhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence            677778888877711111111 123345556665553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.99  E-value=0.062  Score=40.38  Aligned_cols=43  Identities=23%  Similarity=0.328  Sum_probs=26.7

Q ss_pred             CCc--ccChhhhhcCCCccEEecCCccccccchh-hcccccCceeeecC
Q 044597           86 SLK--SLPSSFLSSLLNLYTLEMPFSYIDHTADE-FWKMSKLRYLNFGA  131 (341)
Q Consensus        86 ~~~--~lp~~if~~L~~L~~L~Ls~~~~~~lp~~-i~~L~~L~~L~l~~  131 (341)
                      +++  .+|..+   -.+|++|+|++|.+..+|.. +..+++|++|+|.+
T Consensus        19 ~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           19 GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred             CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence            555  666544   23567777777777777653 45566666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.52  E-value=0.09  Score=39.48  Aligned_cols=36  Identities=25%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccc
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYI  111 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~  111 (341)
                      ..++.|+++ +.+..+|..+|..+++|++|+|++|.+
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            358899998 699999999989999999999999943

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.97  E-value=0.22  Score=40.21  Aligned_cols=109  Identities=11%  Similarity=0.018  Sum_probs=52.4

Q ss_pred             cceeeeeccCC--CCc-----ccChhhhhcCCCccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCCceEE
Q 044597           75 EVRLRENSIIP--SLK-----SLPSSFLSSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYS  142 (341)
Q Consensus        75 l~~Lr~L~l~~--~~~-----~lp~~if~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~  142 (341)
                      -..|+.|+++.  .+.     .+-+.+ ..-+.|+.|+|++|.+.     .+-..+..-+.|++|+|+++.+-+      
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~------  112 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP------  112 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH------
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH------
Confidence            34556666642  221     233444 55666777777777554     233334445566677666622210      


Q ss_pred             eCC-CcchhhhhCCCCCCceEEEEeecc-----hhhhHHHHHhcCCCCCCEEEEEe
Q 044597          143 LHP-CCSTEEILGRLPNLQNLRIWGDLS-----YYQSLLSKSLCRLSCLESLKLAN  192 (341)
Q Consensus       143 ~~~-~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~l~~~l~~l~~L~~L~l~~  192 (341)
                       .+ .. +.+++..-+.|++|++.++..     .....+...+..-+.|+.|+++.
T Consensus       113 -~Ga~a-la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          113 -ELLAR-LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             -HHHHH-HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             -HHHHH-HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence             00 11 222244445566666654311     11223444455555666666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.44  E-value=0.39  Score=38.76  Aligned_cols=89  Identities=10%  Similarity=0.100  Sum_probs=53.7

Q ss_pred             hcCCCccEEecCCc-ccc-----ccchhhcccccCceeeecCcCCCCCCceEEeCC-CcchhhhhCCCCCCceEEEEeec
Q 044597           96 SSLLNLYTLEMPFS-YID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHP-CCSTEEILGRLPNLQNLRIWGDL  168 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~-~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~  168 (341)
                      .+-+.|+.|+|+++ .|.     .+-..+..-+.|+.|+|+++.+-+       .+ .. +.+++..-+.|++|+++.|.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd-------~ga~a-lA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-------SEARG-LIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-------HHHTT-HHHHHHHCSSCCEEECCSSB
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh-------HHHHH-HHHHHhcCCccCeEecCCCc
Confidence            55678999999885 554     244455666778888887732210       00 11 22235555677777777776


Q ss_pred             c--hhhhHHHHHhcCCCCCCEEEEEe
Q 044597          169 S--YYQSLLSKSLCRLSCLESLKLAN  192 (341)
Q Consensus       169 ~--~~~~~l~~~l~~l~~L~~L~l~~  192 (341)
                      .  .....+...+..-+.|+.|++++
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCC
Confidence            2  23455556666666777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.22
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.18
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.07
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.41
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.02
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.88

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=1.8e-19  Score=158.77  Aligned_cols=221  Identities=18%  Similarity=0.173  Sum_probs=157.8

Q ss_pred             ceeeeeccC-CCCc---ccChhhhhcCCCccEEecCC-cccc-ccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           76 VRLRENSII-PSLK---SLPSSFLSSLLNLYTLEMPF-SYID-HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~---~lp~~if~~L~~L~~L~Ls~-~~~~-~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      .|++.|++. ..+.   .+|.++ ++|++|++|+|++ |.+. .+|.+|++|++|++|+++++.+.         +.. +
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~---------~~~-~  118 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---------GAI-P  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---------EEC-C
T ss_pred             EEEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhcccccc---------ccc-c
Confidence            478888886 3443   689999 9999999999987 5544 79999999999999999984332         111 3


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEeecCCCCCC
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNIELIDDPM  228 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~~l~~~~~  228 (341)
                      .. +..+.+|+.++++.+.  ....+|..++.+++|+.++++++.    ....+| .+..++..++.+.+++|.++....
T Consensus       119 ~~-~~~~~~L~~l~l~~N~--~~~~~p~~l~~l~~L~~l~l~~n~----l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         119 DF-LSQIKTLVTLDFSYNA--LSGTLPPSISSLPNLVGITFDGNR----ISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             GG-GGGCTTCCEEECCSSE--EESCCCGGGGGCTTCCEEECCSSC----CEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             cc-ccchhhhccccccccc--ccccCchhhccCcccceeeccccc----ccccccccccccccccccccccccccccccc
Confidence            33 7788899999998876  455667788899999999998873    333677 676772334888888888766666


Q ss_pred             ccCcCCCCCCeEEEE--EeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCC
Q 044597          229 PALEKLPVLQVLKLK--YLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKS  306 (341)
Q Consensus       229 ~~l~~l~~L~~L~l~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  306 (341)
                      ..++.+..+ .+++.  ......+.....+++++.+.+.++. +...+...+.+++|+.|++++|..-+.+|.+++++++
T Consensus       192 ~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         192 PTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             GGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             ccccccccc-cccccccccccccccccccccccccccccccc-ccccccccccccccccccCccCeecccCChHHhCCCC
Confidence            566665443 45551  1111223344567888888888753 3433445667788888888888744478888888888


Q ss_pred             CcEEEEecCC
Q 044597          307 LNKLELWWPE  316 (341)
Q Consensus       307 L~~L~l~~~~  316 (341)
                      |++|++++|.
T Consensus       270 L~~L~Ls~N~  279 (313)
T d1ogqa_         270 LHSLNVSFNN  279 (313)
T ss_dssp             CCEEECCSSE
T ss_pred             CCEEECcCCc
Confidence            8888888874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=1e-17  Score=146.79  Aligned_cols=230  Identities=17%  Similarity=0.173  Sum_probs=174.4

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecC---cCCCCCC----ceEEeCC-
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGA---ITLPAHP----GKYSLHP-  145 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~---~~lp~~i----~~~~~~~-  145 (341)
                      ..+++|+++ +.++++|+..|.++++|++|++++|.+..+ |..|.++++|++|++++   ..+|...    ..+.... 
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            578999998 689999986569999999999999988888 56799999999999998   4455444    3333332 


Q ss_pred             ---CcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccccccCCccEEEEEee
Q 044597          146 ---CCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEYQFPPSLTHLSFSNI  221 (341)
Q Consensus       146 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~~lp~~L~~L~l~~~  221 (341)
                         .. ....+.....++.+....+........+..+..+++|+.++++.+     .+..+| .+  + ++|+.|++++|
T Consensus       111 ~l~~l-~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-----~l~~l~~~~--~-~~L~~L~l~~n  181 (305)
T d1xkua_         111 EITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-----NITTIPQGL--P-PSLTELHLDGN  181 (305)
T ss_dssp             CCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-----CCCSCCSSC--C-TTCSEEECTTS
T ss_pred             chhhh-hhhhhhccccccccccccccccccCCCccccccccccCccccccC-----CccccCccc--C-CccCEEECCCC
Confidence               22 222256677777777766643333444456788899999999887     777777 43  4 89999999999


Q ss_pred             cCCCCCCccCcCCCCCCeEEEEEeC-cEe-eecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcccc
Q 044597          222 ELIDDPMPALEKLPVLQVLKLKYLG-RKL-ACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPE  299 (341)
Q Consensus       222 ~l~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~  299 (341)
                      .........+..++.+++|+++.+. ... ......+++|++|+++++ .++.++.....+++|+.|++++|. ++.++.
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~  259 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGS  259 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred             cCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCc-cCccCh
Confidence            8766666778999999999983332 222 222346799999999995 688888777889999999999987 888764


Q ss_pred             c-------cCCCCCCcEEEEecCC
Q 044597          300 Q-------LWCLKSLNKLELWWPE  316 (341)
Q Consensus       300 ~-------l~~l~~L~~L~l~~~~  316 (341)
                      .       ....++|+.|+++++|
T Consensus       260 ~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         260 NDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             hhccCcchhcccCCCCEEECCCCc
Confidence            2       2457889999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1e-17  Score=151.08  Aligned_cols=227  Identities=17%  Similarity=0.176  Sum_probs=145.3

Q ss_pred             cccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCC--------CC--
Q 044597           70 PIMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPA--------HP--  138 (341)
Q Consensus        70 ~~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~--------~i--  138 (341)
                      +.+..+++|++|+++ +.++.+|. + +++++|++|++++|.+..++. ++++++|+.|++.+..+-.        ..  
T Consensus        60 ~gl~~L~nL~~L~Ls~N~l~~l~~-l-~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~  136 (384)
T d2omza2          60 DGVEYLNNLTQINFSNNQLTDITP-L-KNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNR  136 (384)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             cccccCCCCCEEeCcCCcCCCCcc-c-cCCcccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            457788999999998 68888885 6 999999999999999888864 8999999999987611100        00  


Q ss_pred             ---------------------------------------------------------------ceEEeCCCc--chhhhh
Q 044597          139 ---------------------------------------------------------------GKYSLHPCC--STEEIL  153 (341)
Q Consensus       139 ---------------------------------------------------------------~~~~~~~~~--~~~~~l  153 (341)
                                                                                     ..+.+.+..  .+.. .
T Consensus       137 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~  215 (384)
T d2omza2         137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-L  215 (384)
T ss_dssp             EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred             cccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-c
Confidence                                                                           111111100  0122 3


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEK  233 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  233 (341)
                      +.+++|++|++.++..   ..+ ..+..+++|+.|+++++     .+..++.+..+ ++|++|+++++.+.  ..+.+..
T Consensus       216 ~~~~~L~~L~l~~n~l---~~~-~~l~~l~~L~~L~l~~n-----~l~~~~~~~~~-~~L~~L~l~~~~l~--~~~~~~~  283 (384)
T d2omza2         216 GILTNLDELSLNGNQL---KDI-GTLASLTNLTDLDLANN-----QISNLAPLSGL-TKLTELKLGANQIS--NISPLAG  283 (384)
T ss_dssp             GGCTTCCEEECCSSCC---CCC-GGGGGCTTCSEEECCSS-----CCCCCGGGTTC-TTCSEEECCSSCCC--CCGGGTT
T ss_pred             cccCCCCEEECCCCCC---CCc-chhhcccccchhccccC-----ccCCCCccccc-ccCCEeeccCcccC--CCCcccc
Confidence            4456777777777642   222 35678889999999887     67777655667 78899998888763  3334566


Q ss_pred             CCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEe
Q 044597          234 LPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELW  313 (341)
Q Consensus       234 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  313 (341)
                      ++.++.+.+..+..........+++++.|+++++ ++++++ ....+++|++|++++|. ++.++ ++.++++|++|+++
T Consensus       284 ~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n~-l~~l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAG  359 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccchhcccCeEECCCC-CCCCCc-ccccCCCCCEEECCCCC-CCCCh-hHcCCCCCCEEECC
Confidence            6666666662222111222344566666666653 344443 23456666666666664 55555 35666666666666


Q ss_pred             cCC
Q 044597          314 WPE  316 (341)
Q Consensus       314 ~~~  316 (341)
                      +|.
T Consensus       360 ~N~  362 (384)
T d2omza2         360 HNQ  362 (384)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-17  Score=141.21  Aligned_cols=191  Identities=21%  Similarity=0.196  Sum_probs=120.1

Q ss_pred             eeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597           77 RLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG  154 (341)
Q Consensus        77 ~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~  154 (341)
                      .+...+.+ .+++++|+.+ .  +++++|+|++|.+..+|. .+.++++|++|+++++.+.           . ++. ++
T Consensus        11 ~~~~v~C~~~~L~~iP~~l-p--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-----------~-l~~-~~   74 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----------K-LQV-DG   74 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------E-EEC-CS
T ss_pred             CCeEEEccCCCCCeeCcCc-C--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-----------c-ccc-cc
Confidence            33444565 4788899877 4  578899999999888874 5788888888888874332           1 333 45


Q ss_pred             CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCc
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALE  232 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~  232 (341)
                      .+++|++|++++|.   ....+..+..+++|+.|+++++     .+..++  .+..+ .+++.|.+.+|.+...+...+.
T Consensus        75 ~l~~L~~L~Ls~N~---l~~~~~~~~~l~~L~~L~l~~~-----~~~~~~~~~~~~l-~~l~~L~l~~n~l~~l~~~~~~  145 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQ---LQSLPLLGQTLPALTVLDVSFN-----RLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLT  145 (266)
T ss_dssp             CCTTCCEEECCSSC---CSSCCCCTTTCTTCCEEECCSS-----CCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccccccccccccc---cccccccccccccccccccccc-----ccceeeccccccc-cccccccccccccceecccccc
Confidence            56666666666553   2222334445555555555554     334433  33344 5555555555554333332333


Q ss_pred             CCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCccccccCCCCCCcEEE
Q 044597          233 KLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLE  311 (341)
Q Consensus       233 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  311 (341)
                                            .+++|+.+++++ +.+..++.. .+.+++|++|++++|. ++.+|.++..+++|+.|+
T Consensus       146 ----------------------~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         146 ----------------------PTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             ----------------------TCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEE
T ss_pred             ----------------------ccccchhccccc-ccccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEE
Confidence                                  345566666665 345555533 3568888899988887 788888888888899999


Q ss_pred             EecCC
Q 044597          312 LWWPE  316 (341)
Q Consensus       312 l~~~~  316 (341)
                      ++++|
T Consensus       202 L~~Np  206 (266)
T d1p9ag_         202 LHGNP  206 (266)
T ss_dssp             CCSCC
T ss_pred             ecCCC
Confidence            98876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-17  Score=142.31  Aligned_cols=170  Identities=20%  Similarity=0.096  Sum_probs=131.5

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG  154 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~  154 (341)
                      +++++|+++ +.+..+|...|.++++|++|+|++|.+..+|. ++.+++|++|+++++.+.          .. +.. +.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~----------~~-~~~-~~   97 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ----------SL-PLL-GQ   97 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS----------SC-CCC-TT
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccc----------cc-ccc-cc
Confidence            478999998 68999997766999999999999999999874 688999999999985443          22 344 88


Q ss_pred             CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCc
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALE  232 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~  232 (341)
                      .+++|+.|+++++..  ....+..+..+.+++.|+++++     .+..+|  ++..+ ++++.+++++|.++..+...++
T Consensus        98 ~l~~L~~L~l~~~~~--~~~~~~~~~~l~~l~~L~l~~n-----~l~~l~~~~~~~l-~~l~~l~l~~N~l~~~~~~~~~  169 (266)
T d1p9ag_          98 TLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGN-----ELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLN  169 (266)
T ss_dssp             TCTTCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECTTSCCSCCCTTTTT
T ss_pred             ccccccccccccccc--ceeecccccccccccccccccc-----ccceecccccccc-ccchhcccccccccccCccccc
Confidence            899999999998862  2222345678899999999998     888887  66778 9999999999998777777788


Q ss_pred             CCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEec
Q 044597          233 KLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKS  266 (341)
Q Consensus       233 ~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~  266 (341)
                      .+++|++|+++.+. ..++.....+++|+.|++++
T Consensus       170 ~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             cccccceeecccCCCcccChhHCCCCCCCEEEecC
Confidence            88888888883322 22333334556666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=1.5e-18  Score=152.79  Aligned_cols=227  Identities=16%  Similarity=0.110  Sum_probs=173.7

Q ss_pred             ccccccCCcceeeeeccC--CCCc-ccChhhhhcCCCccEEecCCcccccc-chhhcccccCceeeecCcCCCCCCceEE
Q 044597           67 IISPIMDQEVRLRENSII--PSLK-SLPSSFLSSLLNLYTLEMPFSYIDHT-ADEFWKMSKLRYLNFGAITLPAHPGKYS  142 (341)
Q Consensus        67 ~~~~~~~~l~~Lr~L~l~--~~~~-~lp~~if~~L~~L~~L~Ls~~~~~~l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~  142 (341)
                      .+++.+.++++|++|+++  +++. .+|.++ ++|++|++|+|++|.+..+ |..+..+.+|++++++.+.+        
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~--------  137 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL--------  137 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE--------
T ss_pred             CCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhcccccccccc--------
Confidence            456789999999999996  4565 799999 9999999999999987776 55689999999999987211        


Q ss_pred             eCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCC-CEEEEEeCCCCCCCCccC-c-ccccccCCccEEEEE
Q 044597          143 LHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCL-ESLKLANESKMPRRSNTI-L-AEYQFPPSLTHLSFS  219 (341)
Q Consensus       143 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L-~~L~l~~~~e~~~~l~~l-p-~~~~lp~~L~~L~l~  219 (341)
                       .... +.. ++++++|+.+++.++.  ....+|..+..+..+ +.++++.+     .+... | .+..+  ....+++.
T Consensus       138 -~~~~-p~~-l~~l~~L~~l~l~~n~--l~~~ip~~~~~l~~l~~~l~~~~n-----~l~~~~~~~~~~l--~~~~l~l~  205 (313)
T d1ogqa_         138 -SGTL-PPS-ISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRN-----RLTGKIPPTFANL--NLAFVDLS  205 (313)
T ss_dssp             -ESCC-CGG-GGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSS-----EEEEECCGGGGGC--CCSEEECC
T ss_pred             -cccC-chh-hccCcccceeeccccc--cccccccccccccccccccccccc-----ccccccccccccc--cccccccc
Confidence             1133 556 9999999999999886  344677778888776 77887776     55543 4 55555  34468888


Q ss_pred             eecCCCCCCccCcCCCCCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCC-ceeecCCCCCcccEEEEecCCCCCcc
Q 044597          220 NIELIDDPMPALEKLPVLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLE-EWTMGIKAMPKLECVIINPCAHLKRI  297 (341)
Q Consensus       220 ~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l  297 (341)
                      .+.........++.+++|+.+++..+. .......+.+++|+.|+++++. +. .+|...+.+++|++|++++|..-+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCccCe-ecccCChHHhCCCCCCEEECcCCcccccC
Confidence            887656666678889999999982211 1123345678999999999854 55 78888889999999999999833368


Q ss_pred             ccccCCCCCCcEEEEecCC
Q 044597          298 PEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       298 p~~l~~l~~L~~L~l~~~~  316 (341)
                      |. .+++++|+.+++.+|+
T Consensus       285 P~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         285 PQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CC-STTGGGSCGGGTCSSS
T ss_pred             CC-cccCCCCCHHHhCCCc
Confidence            85 5788899999888886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1e-16  Score=144.46  Aligned_cols=214  Identities=19%  Similarity=0.192  Sum_probs=153.6

Q ss_pred             CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597           74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      .+.+++.|++. ++++.++ .+ +.|++|++|++++|.++.+|. +++|++|++|+++++.+..            +.. 
T Consensus        42 ~l~~l~~L~l~~~~I~~l~-gl-~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~------------i~~-  105 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSID-GV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD------------ITP-  105 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------------CGG-
T ss_pred             HhCCCCEEECCCCCCCCcc-cc-ccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccc------------ccc-
Confidence            45678999998 5888884 68 999999999999999999984 9999999999999955532            233 


Q ss_pred             hCCCCCCceEEEEeecch--------------------------------------------------------------
Q 044597          153 LGRLPNLQNLRIWGDLSY--------------------------------------------------------------  170 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~--------------------------------------------------------------  170 (341)
                      ++++++|+.|++.++...                                                              
T Consensus       106 l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (384)
T d2omza2         106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN  185 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            444555555544432200                                                              


Q ss_pred             ----------------------hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCC
Q 044597          171 ----------------------YQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPM  228 (341)
Q Consensus       171 ----------------------~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~  228 (341)
                                            ....+ ......++|+.|+++++     .++.++.+..+ ++|+.+++++|.++  .+
T Consensus       186 ~~~~~~~~~~l~~~~~l~l~~n~i~~~-~~~~~~~~L~~L~l~~n-----~l~~~~~l~~l-~~L~~L~l~~n~l~--~~  256 (384)
T d2omza2         186 KVSDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN-----QLKDIGTLASL-TNLTDLDLANNQIS--NL  256 (384)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSS-----CCCCCGGGGGC-TTCSEEECCSSCCC--CC
T ss_pred             ccccccccccccccceeeccCCccCCC-CcccccCCCCEEECCCC-----CCCCcchhhcc-cccchhccccCccC--CC
Confidence                                  00001 11334456666776666     66666666778 89999999999874  34


Q ss_pred             ccCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597          229 PALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN  308 (341)
Q Consensus       229 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  308 (341)
                      +.++.+++|++|+++............++.++.+.+..+ .+..+. ....+++++.|++++|. +..++. +..+++|+
T Consensus       257 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~n~-l~~l~~-l~~l~~L~  332 (384)
T d2omza2         257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQ  332 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCC
T ss_pred             CcccccccCCEeeccCcccCCCCcccccccccccccccc-cccccc-ccchhcccCeEECCCCC-CCCCcc-cccCCCCC
Confidence            568899999999994433222334557888999998874 344443 34568999999999997 777763 78899999


Q ss_pred             EEEEecCC
Q 044597          309 KLELWWPE  316 (341)
Q Consensus       309 ~L~l~~~~  316 (341)
                      +|++++|.
T Consensus       333 ~L~L~~n~  340 (384)
T d2omza2         333 RLFFANNK  340 (384)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCC
Confidence            99999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=137.91  Aligned_cols=208  Identities=17%  Similarity=0.148  Sum_probs=148.1

Q ss_pred             CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEE
Q 044597           85 PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLR  163 (341)
Q Consensus        85 ~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~  163 (341)
                      .+++++|..+ .  +.+++|+|++|.+..+|. .+.++++|++|++++..+-          ...... +..+..++.+.
T Consensus        21 ~~L~~iP~~i-p--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~----------~i~~~~-~~~~~~~~~l~   86 (284)
T d1ozna_          21 QGLQAVPVGI-P--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA----------RIDAAA-FTGLALLEQLD   86 (284)
T ss_dssp             SCCSSCCTTC-C--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----------EECTTT-TTTCTTCCEEE
T ss_pred             CCCCccCCCC-C--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc----------cccccc-ccccccccccc
Confidence            3677888777 3  567888999998888875 5788888999988873332          110222 56677777776


Q ss_pred             EEeecchhhhHH-HHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeE
Q 044597          164 IWGDLSYYQSLL-SKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVL  240 (341)
Q Consensus       164 l~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  240 (341)
                      +....  ....+ +..+.++++|+.|+++.+     .+..++  .+... .+|+.+++.+|.++..+...+..+++|+.|
T Consensus        87 ~~~~~--~~~~l~~~~~~~l~~L~~L~l~~n-----~~~~~~~~~~~~~-~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L  158 (284)
T d1ozna_          87 LSDNA--QLRSVDPATFHGLGRLHTLHLDRC-----GLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (284)
T ss_dssp             CCSCT--TCCCCCTTTTTTCTTCCEEECTTS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccc--ccccccchhhcccccCCEEecCCc-----ccccccccccchh-cccchhhhccccccccChhHhccccchhhc
Confidence            65433  22222 345788889999999887     566655  45566 889999999998876666678888999999


Q ss_pred             EEEEeC-cEee-ecCCCCCcccEEEEecCCCCCce-eecCCCCCcccEEEEecCCCCCccc-cccCCCCCCcEEEEecCC
Q 044597          241 KLKYLG-RKLA-CSSDGFPKLKVLHLKSMLWLEEW-TMGIKAMPKLECVIINPCAHLKRIP-EQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       241 ~l~~~~-~~~~-~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  316 (341)
                      ++..+. ..+. ....++++|+++.+.++. +..+ +.....+++|++|++++|. +..+| ..++++++|++|+++++|
T Consensus       159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         159 FLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccCcccccchhhhccccccchhhhhhcc-ccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCC
Confidence            884333 2222 234567889999998743 5555 4556678999999999998 55554 567889999999999855

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.9e-16  Score=131.46  Aligned_cols=189  Identities=15%  Similarity=0.136  Sum_probs=106.2

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHH
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLL  175 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l  175 (341)
                      ..+.+|++|++++|.+..++ ++..+++|++|+++++.+-.            +.. +..+++|+.+++.++.....   
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~------------~~~-l~~l~~l~~l~~~~n~~~~i---  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD------------LAP-LKNLTKITELELSGNPLKNV---  100 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------------CGG-GTTCCSCCEEECCSCCCSCC---
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeec------------ccc-cccccccccccccccccccc---
Confidence            34444555555555444442 34555555555554422211            223 44555555555554431111   


Q ss_pred             HHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCC
Q 044597          176 SKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDG  255 (341)
Q Consensus       176 ~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  255 (341)
                       ..+.++++|+.++++++     ....++.+... +.+..+.++++.+  .....+...++|+.|++..+........+.
T Consensus       101 -~~l~~l~~L~~l~l~~~-----~~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~  171 (227)
T d1h6ua2         101 -SAIAGLQSIKTLDLTST-----QITDVTPLAGL-SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLAN  171 (227)
T ss_dssp             -GGGTTCTTCCEEECTTS-----CCCCCGGGTTC-TTCCEEECCSSCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred             -ccccccccccccccccc-----cccccchhccc-cchhhhhchhhhh--chhhhhccccccccccccccccccchhhcc
Confidence             13455566666666554     33333322233 5566666666554  222345566666666663222222223456


Q ss_pred             CCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEec
Q 044597          256 FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWW  314 (341)
Q Consensus       256 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  314 (341)
                      +++|++|+++++ .+++++. .+.+++|++|++++|+ ++.+|. ++++++|+.|++++
T Consensus       172 l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         172 LSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEE
T ss_pred             cccceecccCCC-ccCCChh-hcCCCCCCEEECcCCc-CCCCcc-cccCCCCCEEEeeC
Confidence            778888888774 5666543 4578999999999996 888874 88999999999975

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=131.72  Aligned_cols=197  Identities=16%  Similarity=0.133  Sum_probs=151.6

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecC-cCCCCCCceEEeCCCcchhhh
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGA-ITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~-~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      ..+++|+++ ++++.+|...|.++++|++|++++|.+..++. .+..+..++.++... ..+.          ...+.. 
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~----------~l~~~~-  100 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR----------SVDPAT-  100 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC----------CCCTTT-
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc----------cccchh-
Confidence            457899998 68999998766999999999999998888765 456788888887654 1111          110334 


Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCcc
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPA  230 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~  230 (341)
                      ++++++|++|++..+...  ...+..+...++|+.++++++     .++.+|  .+..+ ++|++|++++|.++..+..+
T Consensus       101 ~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~l~l~~N-----~l~~i~~~~f~~~-~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDN-----ALQALPDDTFRDL-GNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             TTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTC-TTCCEEECCSSCCCEECTTT
T ss_pred             hcccccCCEEecCCcccc--cccccccchhcccchhhhccc-----cccccChhHhccc-cchhhcccccCcccccchhh
Confidence            899999999999988522  222345677899999999998     888887  67788 89999999999987667778


Q ss_pred             CcCCCCCCeEEEEEeCc-Ee-eecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecCC
Q 044597          231 LEKLPVLQVLKLKYLGR-KL-ACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPCA  292 (341)
Q Consensus       231 l~~l~~L~~L~l~~~~~-~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~  292 (341)
                      +..+++|+++.++++.. .. +.....+++|++|++++ +.+..++ ...+.+++|++|++++++
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccc-cccccccccccccccccCEEEecCCC
Confidence            89999999999943332 22 33456789999999998 4466655 345679999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=4.9e-15  Score=129.41  Aligned_cols=215  Identities=18%  Similarity=0.164  Sum_probs=146.2

Q ss_pred             eeeeeccCC-CCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhC
Q 044597           77 RLRENSIIP-SLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILG  154 (341)
Q Consensus        77 ~Lr~L~l~~-~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~  154 (341)
                      ..+.++-++ +++++|..+ .  +++++|+|++|.+..+|. .|.++++|++|++++..+.          ...+.. ++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l-~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~----------~i~~~~-f~   76 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL-P--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS----------KISPGA-FA   76 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC-C--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC----------CBCTTT-TT
T ss_pred             cCCEEEecCCCCCccCCCC-C--CCCCEEECcCCcCCCcChhHhhcccccccccccccccc----------ccchhh-hh
Confidence            456667663 789999988 3  689999999999999986 6899999999999983332          120333 77


Q ss_pred             CCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCC--CCC-----------------CC---ccCc-ccccccC
Q 044597          155 RLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESK--MPR-----------------RS---NTIL-AEYQFPP  211 (341)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e--~~~-----------------~l---~~lp-~~~~lp~  211 (341)
                      ++++|++|+++++.   ...+|..  ....++.|.+..+.-  +..                 ..   ...+ .+..+ +
T Consensus        77 ~l~~L~~L~l~~n~---l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l-~  150 (305)
T d1xkua_          77 PLVKLERLYLSKNQ---LKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-K  150 (305)
T ss_dssp             TCTTCCEEECCSSC---CSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-T
T ss_pred             CCCccCEecccCCc---cCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccc-c
Confidence            88888888887764   2222221  223444444443210  000                 11   1112 34556 7


Q ss_pred             CccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeC--cEeeecCCCCCcccEEEEecCCCCCceee-cCCCCCcccEEEE
Q 044597          212 SLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLG--RKLACSSDGFPKLKVLHLKSMLWLEEWTM-GIKAMPKLECVII  288 (341)
Q Consensus       212 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l  288 (341)
                      +|+.+.+.+|.+...+.   ..+++|+.|++..+.  .........++.++.|+++++ .+..++. ....+++|++|++
T Consensus       151 ~L~~l~l~~n~l~~l~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         151 KLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             TCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEEC
T ss_pred             ccCccccccCCccccCc---ccCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeec
Confidence            88889998888643322   236789999882222  222234456788999999874 5666643 3456899999999


Q ss_pred             ecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          289 NPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       289 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      ++|. ++.+|.++.++++|++|++++|.
T Consensus       227 ~~N~-L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         227 NNNK-LVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             CSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             cccc-ccccccccccccCCCEEECCCCc
Confidence            9996 89999999999999999999986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=8.5e-15  Score=122.35  Aligned_cols=190  Identities=19%  Similarity=0.180  Sum_probs=146.8

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      ....+.+|+.|++. ++++.++ .+ +++++|++|++++|.+..++. +..+++|++++++++.+.           . +
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~-~l-~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~-----------~-i  100 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-----------N-V  100 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-----------C-C
T ss_pred             CHHHcCCcCEEECCCCCCCcch-hH-hcCCCCcEeecCCceeecccc-cccccccccccccccccc-----------c-c
Confidence            34557889999998 5888985 57 999999999999999888764 899999999999874332           2 5


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCc
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMP  229 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~  229 (341)
                      +. +..+++|+.+.++.+.....    ..+...+.++.+.++++     .+...+.+... ++|+.|.+++|.+.  ...
T Consensus       101 ~~-l~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~-~~L~~L~l~~n~~~--~~~  167 (227)
T d1h6ua2         101 SA-IAGLQSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLN-----QITNISPLAGL-TNLQYLSIGNAQVS--DLT  167 (227)
T ss_dssp             GG-GTTCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECCSS-----CCCCCGGGGGC-TTCCEEECCSSCCC--CCG
T ss_pred             cc-cccccccccccccccccccc----chhccccchhhhhchhh-----hhchhhhhccc-cccccccccccccc--cch
Confidence            66 88999999999988753222    34667889999998776     55554444566 89999999999863  345


Q ss_pred             cCcCCCCCCeEEEEEeCcEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEec
Q 044597          230 ALEKLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINP  290 (341)
Q Consensus       230 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  290 (341)
                      .++.+++|++|+++++...-......+++|++|+++++ ++++++ ..+.+++|+.|++++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCCccCCChhhcCCCCCCEEECcCC-cCCCCc-ccccCCCCCEEEeeC
Confidence            68899999999994443222233567899999999996 688776 356899999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=6.8e-15  Score=121.45  Aligned_cols=164  Identities=21%  Similarity=0.197  Sum_probs=106.3

Q ss_pred             CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhh
Q 044597           74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEI  152 (341)
Q Consensus        74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~  152 (341)
                      .+..++.|++. +.++.++ .+ ..+++|++|++++|.+..++ .++.+++|++|+++++.+..            ++. 
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l-~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~------------l~~-  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GI-QYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD------------LSS-  107 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC------------GGG-
T ss_pred             HhcCccEEECcCCCCCCch-hH-hhCCCCCEEeCCCccccCcc-ccccCccccccccccccccc------------ccc-
Confidence            35667777777 4677765 36 88888888888888888776 46788888888887754432            555 


Q ss_pred             hCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCc
Q 044597          153 LGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALE  232 (341)
Q Consensus       153 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~  232 (341)
                      +..+++|+.|++.++....   + ..+..+++++.++++++     .+...+++..+ ++|+.+++++|.+..  ++.++
T Consensus       108 l~~l~~L~~L~l~~~~~~~---~-~~l~~l~~l~~l~~~~n-----~l~~~~~~~~l-~~L~~l~l~~n~l~~--i~~l~  175 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISD---I-NGLVHLPQLESLYLGNN-----KITDITVLSRL-TKLDTLSLEDNQISD--IVPLA  175 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCC---C-GGGGGCTTCCEEECCSS-----CCCCCGGGGGC-TTCSEEECCSSCCCC--CGGGT
T ss_pred             ccccccccccccccccccc---c-ccccccccccccccccc-----ccccccccccc-ccccccccccccccc--ccccc
Confidence            7778888888887764222   2 24667777888877776     55555555667 778888887777632  34466


Q ss_pred             CCCCCCeEEEEEeCcEeeecCCCCCcccEEEEe
Q 044597          233 KLPVLQVLKLKYLGRKLACSSDGFPKLKVLHLK  265 (341)
Q Consensus       233 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  265 (341)
                      .+++|+.|+++++...-......+++|++|+++
T Consensus       176 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCCCCChhhcCCCCCCEEEcc
Confidence            677777776632221111223445555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=1.3e-14  Score=118.73  Aligned_cols=140  Identities=21%  Similarity=0.249  Sum_probs=76.7

Q ss_pred             cceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhh
Q 044597           75 EVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEIL  153 (341)
Q Consensus        75 l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l  153 (341)
                      +.++++|++. +++.+++ .+ +.+++|++|++++|.+..++. ++++++|++|+++++.+.           . ++. +
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l-~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~-----------~-~~~-l  102 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-----------D-ITP-L  102 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-----------C-CGG-G
T ss_pred             hcCCCEEECCCCCCCCcc-cc-ccCCCcCcCccccccccCccc-ccCCcccccccccccccc-----------c-ccc-c
Confidence            4556666665 3566654 35 667777777777776666653 666677777766653221           1 334 5


Q ss_pred             CCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcC
Q 044597          154 GRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEK  233 (341)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~  233 (341)
                      +.+++|+.|+++++.....    ..+..+++|+.|+++++     .+..++.+..+ ++|+.|++.+|.++.  +++++.
T Consensus       103 ~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~n-----~l~~~~~l~~~-~~L~~L~l~~n~l~~--l~~l~~  170 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDI----DPLKNLTNLNRLELSSN-----TISDISALSGL-TSLQQLNFSSNQVTD--LKPLAN  170 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSS-----CCCCCGGGTTC-TTCSEEECCSSCCCC--CGGGTT
T ss_pred             ccccccccccccccccccc----cccchhhhhHHhhhhhh-----hhccccccccc-ccccccccccccccC--CccccC
Confidence            6666666666665542211    23455566666666555     44444444445 566666666655422  233444


Q ss_pred             CCCCCeEEE
Q 044597          234 LPVLQVLKL  242 (341)
Q Consensus       234 l~~L~~L~l  242 (341)
                      +++|++|++
T Consensus       171 l~~L~~L~l  179 (199)
T d2omxa2         171 LTTLERLDI  179 (199)
T ss_dssp             CTTCCEEEC
T ss_pred             CCCCCEEEC
Confidence            444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=9.9e-15  Score=119.41  Aligned_cols=163  Identities=22%  Similarity=0.237  Sum_probs=110.9

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHH
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLL  175 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l  175 (341)
                      ..+.++++|++++|.+..++ ++..+++|++|+++++.+..            ++. ++++++|++|+++++..   ..+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~------------~~~-l~~l~~L~~L~l~~n~~---~~~   99 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD------------ITP-LKNLTKLVDILMNNNQI---ADI   99 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------------CGG-GTTCTTCCEEECCSSCC---CCC
T ss_pred             HHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccC------------ccc-ccCCccccccccccccc---ccc
Confidence            56788999999999888885 58889999999999855532            445 78888888888887752   222


Q ss_pred             HHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCC
Q 044597          176 SKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDG  255 (341)
Q Consensus       176 ~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  255 (341)
                      + .++++++|+.|+++++     ....++.+..+ ++|+.|++++|.+.  .++.+..+++|++|++             
T Consensus       100 ~-~l~~l~~L~~L~l~~~-----~~~~~~~~~~l-~~L~~L~l~~n~l~--~~~~l~~~~~L~~L~l-------------  157 (199)
T d2omxa2         100 T-PLANLTNLTGLTLFNN-----QITDIDPLKNL-TNLNRLELSSNTIS--DISALSGLTSLQQLNF-------------  157 (199)
T ss_dssp             G-GGTTCTTCSEEECCSS-----CCCCCGGGTTC-TTCSEEECCSSCCC--CCGGGTTCTTCSEEEC-------------
T ss_pred             c-cccccccccccccccc-----ccccccccchh-hhhHHhhhhhhhhc--cccccccccccccccc-------------
Confidence            2 3677788888888766     44444455567 77778887777652  2344555555555554             


Q ss_pred             CCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEE
Q 044597          256 FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKL  310 (341)
Q Consensus       256 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  310 (341)
                               .++ .++.++ ..+.+++|++|++++|+ ++.++ .+.++++|++|
T Consensus       158 ---------~~n-~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         158 ---------SSN-QVTDLK-PLANLTTLERLDISSNK-VSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             ---------CSS-CCCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEE
T ss_pred             ---------ccc-cccCCc-cccCCCCCCEEECCCCC-CCCCc-cccCCCCCCcC
Confidence                     332 233332 23467888888888886 77775 46777787765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.3e-14  Score=119.75  Aligned_cols=167  Identities=23%  Similarity=0.261  Sum_probs=109.0

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHH
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLL  175 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l  175 (341)
                      ..+..|++|++++|.+..++ ++..+++|++|+++++.+-.            ++. ++.+++|++|+++++.   ...+
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~------------l~~-~~~l~~L~~L~l~~n~---i~~l  105 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------------IKP-LANLKNLGWLFLDENK---VKDL  105 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------------CGG-GTTCTTCCEEECCSSC---CCCG
T ss_pred             HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccC------------ccc-cccCcccccccccccc---cccc
Confidence            35677888888888888775 47788888888888744421            444 6677777777777664   2233


Q ss_pred             HHHhcCCCCCCEEEEEeCCCCCCCCccCcccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEEEEeCcEeeecCCC
Q 044597          176 SKSLCRLSCLESLKLANESKMPRRSNTILAEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKLKYLGRKLACSSDG  255 (341)
Q Consensus       176 ~~~l~~l~~L~~L~l~~~~e~~~~l~~lp~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  255 (341)
                      + .+..+++|+.|+++++     .+..++.+..+ ++++.+.+++|.++.  ...++.                      
T Consensus       106 ~-~l~~l~~L~~L~l~~~-----~~~~~~~l~~l-~~l~~l~~~~n~l~~--~~~~~~----------------------  154 (210)
T d1h6ta2         106 S-SLKDLKKLKSLSLEHN-----GISDINGLVHL-PQLESLYLGNNKITD--ITVLSR----------------------  154 (210)
T ss_dssp             G-GGTTCTTCCEEECTTS-----CCCCCGGGGGC-TTCCEEECCSSCCCC--CGGGGG----------------------
T ss_pred             c-cccccccccccccccc-----ccccccccccc-ccccccccccccccc--cccccc----------------------
Confidence            2 4566667777776665     44444444455 566666666665421  222333                      


Q ss_pred             CCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEec
Q 044597          256 FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWW  314 (341)
Q Consensus       256 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  314 (341)
                      +++|+++++.++ .+..++ ..+.+++|++|++++|. ++.+| .+.++++|++|++++
T Consensus       155 l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         155 LTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc-cccccc-cccCCCCCCEEECCCCC-CCCCh-hhcCCCCCCEEEccC
Confidence            455555555553 344443 24568899999999886 78887 588899999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.9e-14  Score=119.27  Aligned_cols=214  Identities=15%  Similarity=0.127  Sum_probs=128.6

Q ss_pred             eeccC-CCCcccChhhhhcCCCccEEecCCccccccch-hhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTAD-EFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~-~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      .++.. .+++++|..+|   +++++|++++|.+..+|. .|.++++|++|+++++.+-.         ...... +..++
T Consensus        12 ~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~---------~i~~~~-f~~l~   78 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---------VIEADV-FSNLP   78 (242)
T ss_dssp             EEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC---------EECSSS-EESCT
T ss_pred             EEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc---------eeeccc-ccccc
Confidence            34443 46778887773   467888888888888876 47888888888887732210         110122 66778


Q ss_pred             CCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCCccCcCC
Q 044597          158 NLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPMPALEKL  234 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l  234 (341)
                      +++++.+..+.. .....+..+.++++|+.++++.+     .+...+   ++..+ ..+..+...++.+.......+..+
T Consensus        79 ~l~~l~~~~~n~-l~~~~~~~~~~l~~L~~l~l~~~-----~l~~~~~~~~~~~l-~~l~~~~~~n~~l~~i~~~~~~~~  151 (242)
T d1xwdc1          79 KLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNT-----GIKHLPDVHKIHSL-QKVLLDIQDNINIHTIERNSFVGL  151 (242)
T ss_dssp             TCCEEEEECCTT-CCEECTTSEECCTTCCEEEEESC-----CCCSCCCCTTTCBS-SCEEEEEESCTTCCEECTTSSTTS
T ss_pred             cccccccccccc-ccccccccccccccccccccchh-----hhcccccccccccc-cccccccccccccccccccccccc
Confidence            888887765431 11222344678888888888887     666655   23344 455554555544433334445444


Q ss_pred             C-CCCeEEEEEeC-cEeeecCCCCCcccEEEEecCCCCCceeec-CCCCCcccEEEEecCCCCCccccc-cCCCCCCcEE
Q 044597          235 P-VLQVLKLKYLG-RKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNKL  310 (341)
Q Consensus       235 ~-~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L  310 (341)
                      + .++.|++..+. ..+.......++++++.....+.+++++.. ...+++|+.|++.++. ++.+|.+ +.++++|+.+
T Consensus       152 ~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESS
T ss_pred             cccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccC
Confidence            3 66667663222 222222223455566655555677777754 3568899999998887 7788753 4555555555


Q ss_pred             EEec
Q 044597          311 ELWW  314 (341)
Q Consensus       311 ~l~~  314 (341)
                      ++.+
T Consensus       231 ~~~~  234 (242)
T d1xwdc1         231 STYN  234 (242)
T ss_dssp             SEES
T ss_pred             cCCC
Confidence            5543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.42  E-value=4.9e-13  Score=118.20  Aligned_cols=54  Identities=26%  Similarity=0.298  Sum_probs=43.7

Q ss_pred             CCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEecCC
Q 044597          255 GFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELWWPE  316 (341)
Q Consensus       255 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  316 (341)
                      .+++|++|+++++ .+..++.   .+++|+.|++++|. ++++|..   +++|++|++++|+
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N~-L~~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA---LPPRLERLIASFNH-LAEVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCCc-CCccccc---cCCCCEEECcCCc
Confidence            4688999999985 5777763   47899999999887 8888853   5689999999998

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-14  Score=124.79  Aligned_cols=198  Identities=18%  Similarity=0.150  Sum_probs=112.3

Q ss_pred             hcCCCccEEecCCcccc--ccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhh
Q 044597           96 SSLLNLYTLEMPFSYID--HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQS  173 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~--~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  173 (341)
                      .....|++||+++|.+.  .++.-+..+++|++|++++..+         ++.. +.. ++++++|++|++++|..-...
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l---------~~~~-~~~-l~~~~~L~~L~Ls~c~~itd~  111 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL---------SDPI-VNT-LAKNSNLVRLNLSGCSGFSEF  111 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC---------CHHH-HHH-HTTCTTCSEEECTTCBSCCHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC---------CcHH-HHH-HhcCCCCcCcccccccccccc
Confidence            45567788888877543  2455567778888888876322         2233 555 777888888888776532334


Q ss_pred             HHHHHhcCCCCCCEEEEEeCCCCCCCCcc--Cc-ccccccCCccEEEEEeec--CCCCCCcc-CcCCCCCCeEEEEE-eC
Q 044597          174 LLSKSLCRLSCLESLKLANESKMPRRSNT--IL-AEYQFPPSLTHLSFSNIE--LIDDPMPA-LEKLPVLQVLKLKY-LG  246 (341)
Q Consensus       174 ~l~~~l~~l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~~--l~~~~~~~-l~~l~~L~~L~l~~-~~  246 (341)
                      .+...+..+++|+.|++++|.    .++.  ++ .+...+++|+.|++++|.  ++...+.. ...+|+|++|+++. ..
T Consensus       112 ~l~~l~~~~~~L~~L~ls~c~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         112 ALQTLLSSCSRLDELNLSWCF----DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             HHHHHHHHCTTCCEEECCCCT----TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             ccchhhHHHHhcccccccccc----ccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC
Confidence            444445667888888888764    3332  22 222333678888887763  22222222 23466777777621 11


Q ss_pred             --cEeeecCCCCCcccEEEEecCCCCCcee-ecCCCCCcccEEEEecCCCCCccccccCCCCCCc
Q 044597          247 --RKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLN  308 (341)
Q Consensus       247 --~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~  308 (341)
                        .........+++|++|++++|+.+++-. ...+.+|+|+.|++.+|-.-..++.-...+|+|+
T Consensus       188 itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             CCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence              1112223356777777777776665432 2345577777777777732222322223355554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.5e-12  Score=96.38  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             eeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCC
Q 044597           79 RENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        79 r~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      |+|+++ ++++.+|. + +++++|++|++++|.+..+|.+++.+++|++|+++++.+-.            ++. ++.++
T Consensus         1 R~L~Ls~n~l~~l~~-l-~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~------------l~~-~~~l~   65 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN------------VDG-VANLP   65 (124)
T ss_dssp             SEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC------------CGG-GTTCS
T ss_pred             CEEEcCCCCCCCCcc-c-ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc------------cCc-ccccc
Confidence            567777 57777764 6 88888888888888888888778888888888888744431            444 66666


Q ss_pred             CCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          158 NLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       158 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                      +|+.|+++++.......+ ..+..+++|+.|+++++
T Consensus        66 ~L~~L~l~~N~i~~~~~~-~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          66 RLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             SCCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTS
T ss_pred             ccCeEECCCCccCCCCCc-hhhcCCCCCCEEECCCC
Confidence            666666666642222111 23444555555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2e-11  Score=102.20  Aligned_cols=192  Identities=15%  Similarity=0.141  Sum_probs=135.8

Q ss_pred             cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHH-HHhc
Q 044597          102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLS-KSLC  180 (341)
Q Consensus       102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~  180 (341)
                      ++++.++..+..+|.++-  +++++|+++++.+.          .. ++..+.++++|++|+++++.  ....++ ..+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~----------~l-~~~~f~~l~~L~~L~ls~n~--~~~~i~~~~f~   75 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLR----------VI-QKGAFSGFGDLEKIEISQND--VLEVIEADVFS   75 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCC----------EE-CTTTTTTCTTCCEEEEESCT--TCCEECSSSEE
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCC----------cc-ChhHhhccchhhhhhhcccc--ccceeeccccc
Confidence            678888888899997663  58999999985443          22 22228899999999999985  222222 3467


Q ss_pred             CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE-EEeC-cEeeecCC--
Q 044597          181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL-KYLG-RKLACSSD--  254 (341)
Q Consensus       181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l-~~~~-~~~~~~~~--  254 (341)
                      ++++++.+.+..+.    .+...+  .+..+ ++|+++.+++|.+..  .+....+.+++.+.. .... ........  
T Consensus        76 ~l~~l~~l~~~~~n----~l~~~~~~~~~~l-~~L~~l~l~~~~l~~--~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~  148 (242)
T d1xwdc1          76 NLPKLHEIRIEKAN----NLLYINPEAFQNL-PNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNINIHTIERNSF  148 (242)
T ss_dssp             SCTTCCEEEEECCT----TCCEECTTSEECC-TTCCEEEEESCCCCS--CCCCTTTCBSSCEEEEEESCTTCCEECTTSS
T ss_pred             cccccccccccccc----ccccccccccccc-ccccccccchhhhcc--ccccccccccccccccccccccccccccccc
Confidence            89999999988754    666655  67889 999999999998743  334455566666655 1111 11111122  


Q ss_pred             -CC-CcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccc-cCCCCCCcEEEEecCC
Q 044597          255 -GF-PKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQ-LWCLKSLNKLELWWPE  316 (341)
Q Consensus       255 -~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  316 (341)
                       .+ ..++.|++.+ +.++.++......++++++....+.+++.+|.. +.++++|++|+++++.
T Consensus       149 ~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         149 VGLSFESVILWLNK-NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TTSBSSCEEEECCS-SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             ccccccceeeeccc-ccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence             22 4677888876 567777766667788888877677779999865 5789999999999986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.2e-13  Score=106.39  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             CcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC
Q 044597           74 QEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        74 ~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~  131 (341)
                      +...+|.|+++ +.+..+|... ..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~-~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~   72 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN   72 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGG-GGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCS
T ss_pred             CcCcCcEEECCCCCCCccCccc-cccccCCEEECCCCCCCccC-CcccCcchhhhhccc
Confidence            34455555555 3555555333 55556666666666555553 355555555555555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.3e-13  Score=114.23  Aligned_cols=206  Identities=19%  Similarity=0.247  Sum_probs=135.5

Q ss_pred             CcceeeeeccCC-CCc-ccChhhhhcCCCccEEecCCcccc-ccchhhcccccCceeeecC-cCCCCCCceEEeCCCcch
Q 044597           74 QEVRLRENSIIP-SLK-SLPSSFLSSLLNLYTLEMPFSYID-HTADEFWKMSKLRYLNFGA-ITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        74 ~l~~Lr~L~l~~-~~~-~lp~~if~~L~~L~~L~Ls~~~~~-~lp~~i~~L~~L~~L~l~~-~~lp~~i~~~~~~~~~~~  149 (341)
                      ...+|++|++++ .+. .-...+|.++++|++|++++|.+. ..+..++++++|++|++++ ..+.         ... +
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~it---------d~~-l  113 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS---------EFA-L  113 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC---------HHH-H
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccc---------ccc-c
Confidence            456889999974 332 222344599999999999999654 4567788999999999987 2222         122 3


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcC-CCCCCEEEEEeCCCCCCCCcc--Cc-ccccccCCccEEEEEeec-CC
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCR-LSCLESLKLANESKMPRRSNT--IL-AEYQFPPSLTHLSFSNIE-LI  224 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~-l~~L~~L~l~~~~e~~~~l~~--lp-~~~~lp~~L~~L~l~~~~-l~  224 (341)
                      ......+++|++|++++|.......+...+.. .++|+.|+++++..   .++.  +. ....+ ++|++|++++|. ++
T Consensus       114 ~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~i~~~~l~~l~~~~-~~L~~L~L~~~~~it  189 (284)
T d2astb2         114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---NLQKSDLSTLVRRC-PNLVHLDLSDSVMLK  189 (284)
T ss_dssp             HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG---GSCHHHHHHHHHHC-TTCSEEECTTCTTCC
T ss_pred             chhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc---cccccccccccccc-ccccccccccccCCC
Confidence            33245789999999998753233444444443 47899999987410   1222  33 33467 899999999986 66


Q ss_pred             CCCCccCcCCCCCCeEEEEE-eC--cEeeecCCCCCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCcc
Q 044597          225 DDPMPALEKLPVLQVLKLKY-LG--RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRI  297 (341)
Q Consensus       225 ~~~~~~l~~l~~L~~L~l~~-~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l  297 (341)
                      ...+..+.++++|++|++++ ..  .......+.+|+|++|++.+|-....+..-...+|+|+   + +|..+..+
T Consensus       190 d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence            66777889999999999932 22  11122345689999999998733333332223466665   3 45556554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.5e-12  Score=101.09  Aligned_cols=125  Identities=15%  Similarity=0.119  Sum_probs=100.2

Q ss_pred             hcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHH
Q 044597           96 SSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLL  175 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l  175 (341)
                      .+...|++|+|++|.|..+|..+..+++|++|+++++.+..            ++. +..+++|++|++++|.   ...+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~------------l~~-~~~l~~L~~L~ls~N~---i~~l   78 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK------------LDG-FPLLRRLKTLLVNNNR---ICRI   78 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE------------ECC-CCCCSSCCEEECCSSC---CCEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc------------cCC-cccCcchhhhhccccc---ccCC
Confidence            68889999999999999998777889999999999965532            445 8899999999999996   3333


Q ss_pred             HHH-hcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCCC---ccCcCCCCCCeEEE
Q 044597          176 SKS-LCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDPM---PALEKLPVLQVLKL  242 (341)
Q Consensus       176 ~~~-l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l  242 (341)
                      +.. +..+++|+.|++++|     .+..++   .+..+ ++|++|++++|+++..+-   ..+..+|+|++|+-
T Consensus        79 ~~~~~~~l~~L~~L~L~~N-----~i~~~~~l~~l~~l-~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          79 GEGLDQALPDLTELILTNN-----SLVELGDLDPLASL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CSCHHHHCTTCCEEECCSC-----CCCCGGGGGGGGGC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             Cccccccccccccceeccc-----cccccccccccccc-cccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            332 457899999999998     777776   56788 899999999999744332   24678899998854

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=4.7e-12  Score=94.80  Aligned_cols=116  Identities=17%  Similarity=0.192  Sum_probs=88.9

Q ss_pred             cEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhcC
Q 044597          102 YTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLCR  181 (341)
Q Consensus       102 ~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~  181 (341)
                      |+|+|++|.+..+| .+..+++|++|+++++.+-          .. ++. ++.+++|++|++++|.   ...++ .++.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~----------~l-p~~-~~~l~~L~~L~l~~N~---i~~l~-~~~~   63 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR----------AL-PPA-LAALRCLEVLQASDNA---LENVD-GVAN   63 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC----------CC-CGG-GGGCTTCCEEECCSSC---CCCCG-GGTT
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccC----------cc-hhh-hhhhhccccccccccc---ccccC-cccc
Confidence            68999999999997 4899999999999996553          33 445 8899999999999985   33443 5889


Q ss_pred             CCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecCCCCC---CccCcCCCCCCeE
Q 044597          182 LSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIELIDDP---MPALEKLPVLQVL  240 (341)
Q Consensus       182 l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l~~~~---~~~l~~l~~L~~L  240 (341)
                      +++|+.|++++|     .+..+|   .+..+ ++|+.|++++|++....   ......+|+|+.+
T Consensus        64 l~~L~~L~l~~N-----~i~~~~~~~~l~~~-~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          64 LPRLQELLLCNN-----RLQQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCEEECCSS-----CCCSSSTTGGGGGC-TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccccCeEECCCC-----ccCCCCCchhhcCC-CCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999988     777776   45677 89999999998864322   1123446777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.18  E-value=7.7e-11  Score=103.70  Aligned_cols=215  Identities=19%  Similarity=0.148  Sum_probs=122.1

Q ss_pred             ceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecC---cCCCCCC---ceEEeCC---
Q 044597           76 VRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGA---ITLPAHP---GKYSLHP---  145 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~---~~lp~~i---~~~~~~~---  145 (341)
                      .+|+.|++. +.+..++. +   .+.|++|++++|.+..+|. ++.+++|++|++++   ...|...   ..+.+..   
T Consensus        78 ~~L~~L~l~~n~l~~l~~-l---p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~  152 (353)
T d1jl5a_          78 QSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL  152 (353)
T ss_dssp             TTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             hhhhhhhhhhcccchhhh-h---ccccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhccccc
Confidence            345555555 35555542 2   1358899999998888885 68899999999987   2222222   3333322   


Q ss_pred             CcchhhhhCCCCCCceEEEEeecchh-----------------hhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc-ccc
Q 044597          146 CCSTEEILGRLPNLQNLRIWGDLSYY-----------------QSLLSKSLCRLSCLESLKLANESKMPRRSNTIL-AEY  207 (341)
Q Consensus       146 ~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp-~~~  207 (341)
                      .. ... ++.++.++.+++..+....                 ...+ .....++.|+.++++++.     ...+| ...
T Consensus       153 ~~-~~~-l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~-----~~~~~~~~~  224 (353)
T d1jl5a_         153 EE-LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL-PELQNLPFLTTIYADNNL-----LKTLPDLPP  224 (353)
T ss_dssp             SS-CCC-CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSC-----CSSCCSCCT
T ss_pred             cc-ccc-ccccccceeccccccccccccccccccccccccccccccc-cccccccccccccccccc-----ccccccccc
Confidence            11 233 5666777777766543111                 0111 224556778888877642     11111 100


Q ss_pred             ----------------cccCCccEEEEEeecCC---------------CCCC-ccCcCCCCCCeEEEEEeCcEeeecCCC
Q 044597          208 ----------------QFPPSLTHLSFSNIELI---------------DDPM-PALEKLPVLQVLKLKYLGRKLACSSDG  255 (341)
Q Consensus       208 ----------------~lp~~L~~L~l~~~~l~---------------~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~  255 (341)
                                      ..+..+....+..+.+.               .... .....+++|++|+++++..  ......
T Consensus       225 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l--~~lp~~  302 (353)
T d1jl5a_         225 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPAL  302 (353)
T ss_dssp             TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC--SCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCcc--Cccccc
Confidence                            01123333333222110               0001 1123468999999944321  112246


Q ss_pred             CCcccEEEEecCCCCCceeecCCCCCcccEEEEecCCCCCccccccCCCCCCcEEEEe
Q 044597          256 FPKLKVLHLKSMLWLEEWTMGIKAMPKLECVIINPCAHLKRIPEQLWCLKSLNKLELW  313 (341)
Q Consensus       256 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  313 (341)
                      +++|+.|+++++ .+++++.   .+++|++|++++|+ ++.+|..   ..+|+.|.+.
T Consensus       303 ~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         303 PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECC
T ss_pred             cCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCcc---ccccCeeECc
Confidence            899999999974 5777763   36789999999998 8999863   3467777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=2.2e-13  Score=111.07  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=77.3

Q ss_pred             CCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEE
Q 044597           86 SLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIW  165 (341)
Q Consensus        86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~  165 (341)
                      .+..+|.++ +.+++|++|+|++|.|..++ ++..+++|++|+++++.+.          .  ++.....+++|++|++.
T Consensus        36 ~i~~l~~sl-~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~----------~--i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          36 PIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK----------K--IENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCCCCHHHH-HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEEC----------S--CSSHHHHHHHCCEEECS
T ss_pred             chhhhhhHH-hcccccceeECcccCCCCcc-cccCCccccChhhcccccc----------c--ccccccccccccccccc
Confidence            566777777 88888888888888888886 5888888888888872221          1  11102334567788887


Q ss_pred             eecchhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccCc---ccccccCCccEEEEEeecC
Q 044597          166 GDLSYYQSLLSKSLCRLSCLESLKLANESKMPRRSNTIL---AEYQFPPSLTHLSFSNIEL  223 (341)
Q Consensus       166 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~lp---~~~~lp~~L~~L~l~~~~l  223 (341)
                      +|.   ...+ ..+..+++|+.|++++|     .++.++   ++..+ ++|+.|++++|++
T Consensus       102 ~N~---i~~l-~~~~~l~~L~~L~L~~N-----~i~~~~~~~~l~~l-~~L~~L~L~~N~l  152 (198)
T d1m9la_         102 YNQ---IASL-SGIEKLVNLRVLYMSNN-----KITNWGEIDKLAAL-DKLEDLLLAGNPL  152 (198)
T ss_dssp             EEE---CCCH-HHHHHHHHSSEEEESEE-----ECCCHHHHHHHTTT-TTCSEEEECSSHH
T ss_pred             ccc---cccc-ccccccccccccccccc-----hhccccccccccCC-CccceeecCCCcc
Confidence            774   2233 23566777888888776     666654   45677 7788888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.07  E-value=4.7e-11  Score=96.44  Aligned_cols=122  Identities=17%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             eeccC-CCCcccChhhhhcCCCccEEecCCccccc-c-chhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCC
Q 044597           80 ENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDH-T-ADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRL  156 (341)
Q Consensus        80 ~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~-l-p~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l  156 (341)
                      .++.+ .+++++|..+ .  .++++|+|++|.+.. + +..+..+++|+.|+++++.+-          ...... +..+
T Consensus        12 ~v~Cs~~~L~~iP~~l-p--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~----------~~~~~~-~~~~   77 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI-P--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT----------GIEPNA-FEGA   77 (192)
T ss_dssp             EEECTTSCCSSCCSCC-C--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC----------CBCTTT-TTTC
T ss_pred             EEEEeCCCcCccCCCC-C--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc----------cccccc-cccc
Confidence            45555 4778888877 3  678888999888864 4 345678888888888773332          110223 6677


Q ss_pred             CCCceEEEEeecchhhhHHH-HHhcCCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCC
Q 044597          157 PNLQNLRIWGDLSYYQSLLS-KSLCRLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELI  224 (341)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~  224 (341)
                      ++|++|++++|.   +..++ ..+.++++|+.|+|+++     .++.+|  ++..+ ++|++|++++|.+.
T Consensus        78 ~~L~~L~Ls~N~---l~~l~~~~F~~l~~L~~L~L~~N-----~l~~i~~~~f~~l-~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          78 SHIQELQLGENK---IKEISNKMFLGLHQLKTLNLYDN-----QISCVMPGSFEHL-NSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECCSCC---CCEECSSSSTTCTTCCEEECCSS-----CCCEECTTSSTTC-TTCCEEECTTCCBC
T ss_pred             cccceeeecccc---ccccCHHHHhCCCcccccccCCc-----cccccCHHHhcCC-cccccccccccccc
Confidence            777777777764   22332 23566677777777666     666665  55666 66777777666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=5.7e-11  Score=95.97  Aligned_cols=122  Identities=17%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             ccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcchhhhhCCCCCCceEEEEeecchhhhHHHHHhc
Q 044597          101 LYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCSTEEILGRLPNLQNLRIWGDLSYYQSLLSKSLC  180 (341)
Q Consensus       101 L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~  180 (341)
                      .++++.+++.+..+|.++.  +++++|+|+++.+..         ...... ++.+++|++|+++++.  .....+..+.
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~---------~~~~~~-f~~l~~L~~L~L~~N~--i~~~~~~~~~   75 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGR---------ISSDGL-FGRLPHLVKLELKRNQ--LTGIEPNAFE   75 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCS---------BCCSCS-GGGCTTCCEEECCSSC--CCCBCTTTTT
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcc---------cccccc-cCCCceEeeeeccccc--cccccccccc
Confidence            4578999999999998764  689999999955431         110223 7889999999998885  2223345677


Q ss_pred             CCCCCCEEEEEeCCCCCCCCccCc--ccccccCCccEEEEEeecCCCCCCccCcCCCCCCeEEE
Q 044597          181 RLSCLESLKLANESKMPRRSNTIL--AEYQFPPSLTHLSFSNIELIDDPMPALEKLPVLQVLKL  242 (341)
Q Consensus       181 ~l~~L~~L~l~~~~e~~~~l~~lp--~~~~lp~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  242 (341)
                      .+++|+.|++++|     .+..+|  .+..+ ++|++|+|++|.++..+..+|..+++|++|++
T Consensus        76 ~~~~L~~L~Ls~N-----~l~~l~~~~F~~l-~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          76 GASHIQELQLGEN-----KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TCTTCCEEECCSC-----CCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             cccccceeeeccc-----cccccCHHHHhCC-CcccccccCCccccccCHHHhcCCcccccccc
Confidence            8899999999988     888887  67888 89999999999987767777888888888887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=1e-11  Score=100.97  Aligned_cols=107  Identities=18%  Similarity=0.152  Sum_probs=88.0

Q ss_pred             ccCCcceeeeeccC-CCCcccChhhhhcCCCccEEecCCccccccchhhcccccCceeeecCcCCCCCCceEEeCCCcch
Q 044597           71 IMDQEVRLRENSII-PSLKSLPSSFLSSLLNLYTLEMPFSYIDHTADEFWKMSKLRYLNFGAITLPAHPGKYSLHPCCST  149 (341)
Q Consensus        71 ~~~~l~~Lr~L~l~-~~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~~~~~  149 (341)
                      .+..+.+|+.|+++ +.++.++ .+ +.+++|++|++++|.+..+|.....+++|++|+++++.+..            +
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~-~l-~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~------------l  108 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS------------L  108 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC-CH-HHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC------------H
T ss_pred             HHhcccccceeECcccCCCCcc-cc-cCCccccChhhcccccccccccccccccccccccccccccc------------c
Confidence            45668899999998 5888886 47 99999999999999999998777778899999999854432            6


Q ss_pred             hhhhCCCCCCceEEEEeecchhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          150 EEILGRLPNLQNLRIWGDLSYYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       150 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                      +. +..+++|++|++++|.......+ ..+..+++|+.|++++|
T Consensus       109 ~~-~~~l~~L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         109 SG-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HH-HHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSS
T ss_pred             cc-ccccccccccccccchhcccccc-ccccCCCccceeecCCC
Confidence            66 88899999999999863333332 46899999999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.2e-08  Score=75.83  Aligned_cols=45  Identities=16%  Similarity=0.117  Sum_probs=24.4

Q ss_pred             CCcccChhhhhcCCCccEEecCCc-cccccch-hhcccccCceeeecC
Q 044597           86 SLKSLPSSFLSSLLNLYTLEMPFS-YIDHTAD-EFWKMSKLRYLNFGA  131 (341)
Q Consensus        86 ~~~~lp~~if~~L~~L~~L~Ls~~-~~~~lp~-~i~~L~~L~~L~l~~  131 (341)
                      ++.+.|..+ ..+++|+.|+++++ .+..++. .|..+++|+.|++++
T Consensus        19 ~~~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~   65 (156)
T d2ifga3          19 GALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK   65 (156)
T ss_dssp             CCCTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred             CCccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeec
Confidence            444555555 56666666666544 3555543 345555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.5e-08  Score=76.30  Aligned_cols=89  Identities=24%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             cccccCCcceeeeeccC-C-CCcccChhhhhcCCCccEEecCCccccccc-hhhcccccCceeeecCcCCCCCCceEEeC
Q 044597           68 ISPIMDQEVRLRENSII-P-SLKSLPSSFLSSLLNLYTLEMPFSYIDHTA-DEFWKMSKLRYLNFGAITLPAHPGKYSLH  144 (341)
Q Consensus        68 ~~~~~~~l~~Lr~L~l~-~-~~~~lp~~if~~L~~L~~L~Ls~~~~~~lp-~~i~~L~~L~~L~l~~~~lp~~i~~~~~~  144 (341)
                      ....+..+++++.|++. + .++.++...|..+++|+.|++++|.+..++ ..|..+++|++|+|+++.+.         
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~---------   93 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE---------   93 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS---------
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc---------
Confidence            34456677788888885 3 488888776688999999999999888884 45788888888888884443         


Q ss_pred             CCcchhhhhCCCCCCceEEEEeec
Q 044597          145 PCCSTEEILGRLPNLQNLRIWGDL  168 (341)
Q Consensus       145 ~~~~~~~~l~~l~~L~~L~l~~~~  168 (341)
                       .. +.. .-...+|+.|++.+|.
T Consensus        94 -~l-~~~-~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          94 -SL-SWK-TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             -CC-CST-TTCSCCCCEEECCSSC
T ss_pred             -cc-Chh-hhccccccccccCCCc
Confidence             22 222 2233357777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.41  E-value=6.6e-09  Score=91.30  Aligned_cols=228  Identities=14%  Similarity=0.099  Sum_probs=140.5

Q ss_pred             cCCcceeeeeccCC-CC-----cccChhhhhcCCCccEEecCCccccc-----------cchhhcccccCceeeecCcCC
Q 044597           72 MDQEVRLRENSIIP-SL-----KSLPSSFLSSLLNLYTLEMPFSYIDH-----------TADEFWKMSKLRYLNFGAITL  134 (341)
Q Consensus        72 ~~~l~~Lr~L~l~~-~~-----~~lp~~if~~L~~L~~L~Ls~~~~~~-----------lp~~i~~L~~L~~L~l~~~~l  134 (341)
                      +.....++.|++++ .+     ..+-..+ ...++|+.|+++++....           +...+...++|+.|+++++.+
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHH-HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            44456677788863 23     2344445 778888899988763322           223345677888898887333


Q ss_pred             CCCCceEEeCC-CcchhhhhCCCCCCceEEEEeecchh--hhHHHH---------HhcCCCCCCEEEEEeCCCCCCCCcc
Q 044597          135 PAHPGKYSLHP-CCSTEEILGRLPNLQNLRIWGDLSYY--QSLLSK---------SLCRLSCLESLKLANESKMPRRSNT  202 (341)
Q Consensus       135 p~~i~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~---------~l~~l~~L~~L~l~~~~e~~~~l~~  202 (341)
                      ..       .+ .. +.+.+...++|+.|+++++....  ...+..         .....+.|+.+.++.+     .++.
T Consensus       106 ~~-------~~~~~-l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-----~i~~  172 (344)
T d2ca6a1         106 GP-------TAQEP-LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-----RLEN  172 (344)
T ss_dssp             CT-------TTHHH-HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-----CCTG
T ss_pred             cc-------ccccc-hhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc-----cccc
Confidence            21       01 11 22225677889999998775211  111111         1246678888988775     3332


Q ss_pred             -----Cc-ccccccCCccEEEEEeecCCCCC-----CccCcCCCCCCeEEEEEeCcE------eeecCCCCCcccEEEEe
Q 044597          203 -----IL-AEYQFPPSLTHLSFSNIELIDDP-----MPALEKLPVLQVLKLKYLGRK------LACSSDGFPKLKVLHLK  265 (341)
Q Consensus       203 -----lp-~~~~lp~~L~~L~l~~~~l~~~~-----~~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~~L~~L~l~  265 (341)
                           +. .+... ++|+.|++++|.+....     ...+...++|+.|+++.+...      +......+++|++|+++
T Consensus       173 ~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         173 GSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cccccccchhhhh-hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence                 22 34456 88999999999875321     234677899999999433211      11223467899999999


Q ss_pred             cCCCCCcee-----e--cCCCCCcccEEEEecCCCCCc-----cccccC-CCCCCcEEEEecCC
Q 044597          266 SMLWLEEWT-----M--GIKAMPKLECVIINPCAHLKR-----IPEQLW-CLKSLNKLELWWPE  316 (341)
Q Consensus       266 ~~~~l~~~~-----~--~~~~l~~L~~L~l~~c~~l~~-----lp~~l~-~l~~L~~L~l~~~~  316 (341)
                      +|. +....     .  .....++|++|++++|. ++.     +...+. +.++|+.|+++++.
T Consensus       252 ~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         252 DCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             TCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            864 43321     1  11235789999999987 543     344443 57899999998876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.2e-10  Score=101.16  Aligned_cols=88  Identities=16%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             cCCcceeeeeccC-CCCc-----ccChhhhhcCCCccEEecCCccccc-----cchhhc-ccccCceeeecCcCCCCCCc
Q 044597           72 MDQEVRLRENSII-PSLK-----SLPSSFLSSLLNLYTLEMPFSYIDH-----TADEFW-KMSKLRYLNFGAITLPAHPG  139 (341)
Q Consensus        72 ~~~l~~Lr~L~l~-~~~~-----~lp~~if~~L~~L~~L~Ls~~~~~~-----lp~~i~-~L~~L~~L~l~~~~lp~~i~  139 (341)
                      ++.+++++.|++. +.++     .++..+ ..+++|++|||++|.+..     +...+. ...+|++|+++++.+.+   
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~---   98 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---   98 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG---
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc---
Confidence            3445666666665 2333     344555 777888888888876542     222221 12467888887633321   


Q ss_pred             eEEeCC-CcchhhhhCCCCCCceEEEEeec
Q 044597          140 KYSLHP-CCSTEEILGRLPNLQNLRIWGDL  168 (341)
Q Consensus       140 ~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~  168 (341)
                          .+ .. +.+++..+++|++|+++++.
T Consensus        99 ----~~~~~-l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          99 ----AGCGV-LSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             ----GGHHH-HHHHTTSCTTCCEEECCSSB
T ss_pred             ----ccccc-ccchhhcccccccccccccc
Confidence                00 11 22237788889999888765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.02  E-value=7.3e-08  Score=84.40  Aligned_cols=218  Identities=19%  Similarity=0.184  Sum_probs=143.2

Q ss_pred             CCcccChhhhhcCCCccEEecCCcccc-----ccchhhcccccCceeeecCcC---CCCCCceEEeCCCcchhhhhCCCC
Q 044597           86 SLKSLPSSFLSSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAIT---LPAHPGKYSLHPCCSTEEILGRLP  157 (341)
Q Consensus        86 ~~~~lp~~if~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~---lp~~i~~~~~~~~~~~~~~l~~l~  157 (341)
                      .+..+...+ .+...++.|+|++|.+.     .+-..+...++|+.|++++..   .....   ...... +.+++...+
T Consensus        19 ~~~~l~~~L-~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~---~~~~~~-l~~~l~~~~   93 (344)
T d2ca6a1          19 DEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI---PEALRL-LLQALLKCP   93 (344)
T ss_dssp             HHHTTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS---HHHHHH-HHHHHTTCT
T ss_pred             HHHHHHHHH-hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccccccccc---chHHHH-HHHHHhhCC
Confidence            455677777 89999999999999653     344556778999999998611   11000   000001 222377889


Q ss_pred             CCceEEEEeecc--hhhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC-----c-c---------cccccCCccEEEEEe
Q 044597          158 NLQNLRIWGDLS--YYQSLLSKSLCRLSCLESLKLANESKMPRRSNTI-----L-A---------EYQFPPSLTHLSFSN  220 (341)
Q Consensus       158 ~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l-----p-~---------~~~lp~~L~~L~l~~  220 (341)
                      +|+.|++++|..  .....+...+...++|+.|++++|     .++..     . .         .... +.|+.+.+++
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-----~l~~~~~~~l~~~l~~~~~~~~~~~~-~~L~~l~l~~  167 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-----GLGPQAGAKIARALQELAVNKKAKNA-PPLRSIICGR  167 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-----CCHHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEECCS
T ss_pred             Ccccccccccccccccccchhhhhcccccchheecccc-----cccccccccccccccccccccccccC-cccceeeccc
Confidence            999999998862  235667777888999999999987     33221     0 0         1134 6899999999


Q ss_pred             ecCCCCCCcc----CcCCCCCCeEEEEEeCcE-------eeecCCCCCcccEEEEecCCCCCc-----eeecCCCCCccc
Q 044597          221 IELIDDPMPA----LEKLPVLQVLKLKYLGRK-------LACSSDGFPKLKVLHLKSMLWLEE-----WTMGIKAMPKLE  284 (341)
Q Consensus       221 ~~l~~~~~~~----l~~l~~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~  284 (341)
                      |.+.......    +...+.|++|++..+...       +......+++|+.|+++++. +..     +......+++|+
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCC
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccch
Confidence            8865443332    456789999999332211       11123467899999999753 322     222344689999


Q ss_pred             EEEEecCCCCCc-----cccccCC--CCCCcEEEEecCC
Q 044597          285 CVIINPCAHLKR-----IPEQLWC--LKSLNKLELWWPE  316 (341)
Q Consensus       285 ~L~l~~c~~l~~-----lp~~l~~--l~~L~~L~l~~~~  316 (341)
                      +|.+++|. ++.     +-..+..  .++|++|++++|.
T Consensus       247 ~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         247 ELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             EEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            99999998 554     2223322  4679999999987

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1e-05  Score=62.39  Aligned_cols=41  Identities=17%  Similarity=0.213  Sum_probs=25.1

Q ss_pred             hhhcCCCccEEecCCccccccc---hhhcccccCceeeecCcCC
Q 044597           94 FLSSLLNLYTLEMPFSYIDHTA---DEFWKMSKLRYLNFGAITL  134 (341)
Q Consensus        94 if~~L~~L~~L~Ls~~~~~~lp---~~i~~L~~L~~L~l~~~~l  134 (341)
                      ++.++++|++|+|++|.+..++   ..+..+++|++|+++++.+
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  103 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc
Confidence            3356677777777777655542   3455667777777766444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=3.8e-05  Score=68.57  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=75.8

Q ss_pred             ceeeeeccC-CCCcccC-hhhhhcCCCccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCCceEEeCC-Cc
Q 044597           76 VRLRENSII-PSLKSLP-SSFLSSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHP-CC  147 (341)
Q Consensus        76 ~~Lr~L~l~-~~~~~lp-~~if~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~  147 (341)
                      ..|+.|+++ +++.... ..++..++++++|+|++|.+.     .++..+..+++|++|+|+++.+.+       .+ ..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~-------~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-------VGVHC   74 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-------HHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCCh-------HHHHH
Confidence            367888887 4665432 223388899999999999654     455667889999999999843310       00 00


Q ss_pred             chhhhhC-CCCCCceEEEEeecc--hhhhHHHHHhcCCCCCCEEEEEeC
Q 044597          148 STEEILG-RLPNLQNLRIWGDLS--YYQSLLSKSLCRLSCLESLKLANE  193 (341)
Q Consensus       148 ~~~~~l~-~l~~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~  193 (341)
                       +.+++. ...+|++|++++|..  .....++..+..+++|+.|++++|
T Consensus        75 -l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          75 -VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             -HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             -HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence             111132 235799999998863  234567778899999999999987

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=1.3e-05  Score=61.70  Aligned_cols=14  Identities=21%  Similarity=0.157  Sum_probs=7.5

Q ss_pred             hcccccCceeeecC
Q 044597          118 FWKMSKLRYLNFGA  131 (341)
Q Consensus       118 i~~L~~L~~L~l~~  131 (341)
                      ...+++|++|++++
T Consensus        61 ~~~~~~L~~L~Ls~   74 (162)
T d1koha1          61 EENIPELLSLNLSN   74 (162)
T ss_dssp             HHHCTTCCCCCCCS
T ss_pred             HHhCCCCCEeeCCC
Confidence            34455555555555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.97  E-value=0.0012  Score=50.45  Aligned_cols=36  Identities=14%  Similarity=0.116  Sum_probs=17.2

Q ss_pred             hcCCCccEEecCCcccc-----ccchhhcccccCceeeecC
Q 044597           96 SSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGA  131 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~  131 (341)
                      ...++|++|+|++|.+.     .+...+...+.|++|++++
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeeh
Confidence            44555666666655332     2222333444555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.94  E-value=0.0028  Score=48.29  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=73.9

Q ss_pred             hcCCCccEEecCCc-ccc-----ccchhhcccccCceeeecCcCCCCCCceEEeCC-CcchhhhhCCCCCCceEEEEeec
Q 044597           96 SSLLNLYTLEMPFS-YID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHP-CCSTEEILGRLPNLQNLRIWGDL  168 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~-~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~  168 (341)
                      .+.++|+.|+|+++ .+.     .+-..+...++|++|+++++.+.+       .+ .. +.+++...+.|++|++++|.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~-------~~~~~-la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-------SEARG-LIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-------HHHTT-HHHHHHHCSSCCEEECCSSB
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccch-------hHHHH-Hhhhhhhcccccceeeehhh
Confidence            45688999999875 332     233456677889999999833321       00 11 33336677889999999887


Q ss_pred             ch--hhhHHHHHhcCCCCCCEEEEEeCCCCCCCCccC--------c-ccccccCCccEEEEEeec
Q 044597          169 SY--YQSLLSKSLCRLSCLESLKLANESKMPRRSNTI--------L-AEYQFPPSLTHLSFSNIE  222 (341)
Q Consensus       169 ~~--~~~~l~~~l~~l~~L~~L~l~~~~e~~~~l~~l--------p-~~~~lp~~L~~L~l~~~~  222 (341)
                      ..  ....+...+...+.|++|+++++     ....+        . .+..- ++|+.|+++.+.
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n-----~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~~~  142 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQ-----RQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS  142 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCC-----SSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCC-----cCCCccHHHHHHHHHHHHhC-CCccEeeCcCCC
Confidence            32  35566677888899999999875     33332        1 22234 678888876553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.93  E-value=0.0062  Score=46.08  Aligned_cols=89  Identities=13%  Similarity=0.034  Sum_probs=42.9

Q ss_pred             hcCCCccEEecCCcccc-----ccchhhcccccCceeeecCcCCCCCCceEEeCC-CcchhhhhCCCCCCceEEEEeec-
Q 044597           96 SSLLNLYTLEMPFSYID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHP-CCSTEEILGRLPNLQNLRIWGDL-  168 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-  168 (341)
                      ...++|++|++++|.+.     .+-..+...+.++.+++++..+-.       .+ .. +.+++...++|+.+++..+. 
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~-------~g~~~-l~~~l~~~~~L~~l~L~l~~n  114 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG-------SGILA-LVEALQSNTSLIELRIDNQSQ  114 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH-------HHHHH-HHHGGGGCSSCCEEECCCCSS
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc-------hhHHH-HHHHHHhCccccEEeeccCCC
Confidence            56667777777777442     222334455666666666521110       00 00 11124555666655554322 


Q ss_pred             ---chhhhHHHHHhcCCCCCCEEEEEe
Q 044597          169 ---SYYQSLLSKSLCRLSCLESLKLAN  192 (341)
Q Consensus       169 ---~~~~~~l~~~l~~l~~L~~L~l~~  192 (341)
                         ......+...+...+.|+.|++++
T Consensus       115 ~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         115 PLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence               112334445555566666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.88  E-value=0.0042  Score=47.07  Aligned_cols=88  Identities=13%  Similarity=0.071  Sum_probs=48.3

Q ss_pred             hcCCCccEEecCCc-ccc-----ccchhhcccccCceeeecCcCCCCCCceEEeCC-CcchhhhhCCCCCCceEEEEeec
Q 044597           96 SSLLNLYTLEMPFS-YID-----HTADEFWKMSKLRYLNFGAITLPAHPGKYSLHP-CCSTEEILGRLPNLQNLRIWGDL  168 (341)
Q Consensus        96 ~~L~~L~~L~Ls~~-~~~-----~lp~~i~~L~~L~~L~l~~~~lp~~i~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~  168 (341)
                      .+.+.|++|+++++ .+.     .+-..+...++|+.|++++..+.+       .+ .. +.+++...+.++.+++.++.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~-------~~~~~-L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-------PVAFA-LAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-------HHHHH-HHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccH-------HHHHH-HHHHHhhcccchhhhhcccc
Confidence            56788888888874 332     233445566777777777633321       00 01 11224555666777666654


Q ss_pred             --chhhhHHHHHhcCCCCCCEEEEE
Q 044597          169 --SYYQSLLSKSLCRLSCLESLKLA  191 (341)
Q Consensus       169 --~~~~~~l~~~l~~l~~L~~L~l~  191 (341)
                        ......+...+...++|+.++|+
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             ccchhHHHHHHHHHhCccccEEeec
Confidence              12234455556666666666554