Citrus Sinensis ID: 044631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFEDKPEM
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccHcHHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
massssscnyevflnfrgedtrksfTCYLYDKlyegkkiktfiddeelrrgdeisPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILEckntngqiiipvfygvspsdvrhqngtfgdRFDELKKQFEDKPEM
Flexible Loop (DISEMBL)
MASSSSSCNYEVFlnfrgedtrksFTCYLydklyegkkIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELkkqfedkpem
Low Complexity Region (SEG)
MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFEDKPEM
Disordered region (IsUnstruct)
*******CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSP***************************
Disordered Region (DISOPRED)
*****SS*NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQ*******
Disordered Region (DISEMBL)
********NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKK********
Disordered Region (DISPRO)
******SCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFEDKPEM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.926	0.110	0.511	3e-31
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.897	0.093	0.536	8e-29
O82500	1095	Putative disease resistan	no	no	0.904	0.112	0.531	1e-27
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.970	0.372	0.438	2e-24
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.897	0.296	0.44	2e-20
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.919	0.318	0.443	6e-20
Q9SYC9	571	Vesicle-associated protei	no	no	0.904	0.215	0.380	1e-17
Q9FL92	1372	Probable WRKY transcripti	no	no	0.625	0.061	0.301	3e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 9   NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKIS 68
           +Y+VFL+FRGEDTRK+FT +LY+ L + K IKTF DD+ L  G  I   L  AI+ S+ +
Sbjct: 11  SYDVFLSFRGEDTRKTFTSHLYEVLND-KGIKTFQDDKRLEYGATIPGELCKAIEESQFA 69

Query: 69  VVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKK 128
           +V+FS++YA+S+WCLNELVKI+ECK    Q +IP+FY V PS VR+Q  +F   F+E + 
Sbjct: 70  IVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHET 129

Query: 129 QFEDKPE 135
           +++D  E
Sbjct: 130 KYKDDVE 136

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 88/125 (70%), Gaps = 3/125 (2%)

Query: 1   MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLN 60
           +ASSS S  Y+VF +FRGED R SF  +L  +L  GK I TFIDDE + R   I P LL+
Sbjct: 3   IASSSGSRRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAI-TFIDDE-IERSRSIGPELLS 59

Query: 61  AIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFG 120
           AI+ S+I++VIFSK+YASS WCLNELV+I +C     Q++IP+F+ V  S+V+ Q G FG
Sbjct: 60  AIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFG 119

Query: 121 DRFDE 125
             F+E
Sbjct: 120 KVFEE 124

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 86/126 (68%), Gaps = 3/126 (2%)

Query: 1   MASSSS-SCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALL 59
           MASSSS S  Y+VF +FRGED R +F  +L  K +E K I TF DD  ++R   I   L 
Sbjct: 1   MASSSSNSWRYDVFPSFRGEDVRNNFLSHLL-KEFESKGIVTFRDDH-IKRSHTIGHELR 58

Query: 60  NAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTF 119
            AI+ SKISVV+FS++YASS WCL+EL++I++CK   G  ++PVFY V PSD+R Q G F
Sbjct: 59  AAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKF 118

Query: 120 GDRFDE 125
           G  F E
Sbjct: 119 GMSFLE 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 7/139 (5%)

Query: 1   MASSSS----SCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISP 56
           MA+SSS        +VF+NFRG+D R  F  +L   + E   I  FID +E+   D ++ 
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREAN-INVFIDKDEVVGTDLVN- 58

Query: 57  ALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQN 116
            L   IQ S+++VVIFSKDY SS+WCL+EL +I +C N  G   IP+FY ++PS V    
Sbjct: 59  -LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELK 117

Query: 117 GTFGDRFDELKKQFEDKPE 135
           G FGD F  LK+++++ PE
Sbjct: 118 GGFGDTFRVLKEKYKNDPE 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)

Query: 11  EVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVV 70
           +VF+NFRG+D RK F  +L   L + +KI  FID++E R    IS  L + I  SKI++V
Sbjct: 23  QVFINFRGKDLRKGFMSFLKPAL-KKEKINVFIDEQEERGKYLIS--LFDTIGESKIALV 79

Query: 71  IFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQF 130
           IFS+ Y  S WC++ELVKI E  + N  IIIP+FY +    V+   G FGD F +L  ++
Sbjct: 80  IFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKY 139

Query: 131 EDKPE 135
           + +P+
Sbjct: 140 QPEPK 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 77/133 (57%), Gaps = 8/133 (6%)

Query: 1   MASSSS-----SCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEIS 55
           MASSSS         +VF+ FRG D RK F  +L   L E   I  FID+ E   G E++
Sbjct: 1   MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREAN-INVFIDENEFL-GSEMA 58

Query: 56  PALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQ 115
             LL  I+ S++++VIFS D+  S  CLNEL KI E K+    I+IP+FY V PS V+  
Sbjct: 59  -NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFL 117

Query: 116 NGTFGDRFDELKK 128
            G FGD F  L++
Sbjct: 118 EGKFGDNFRALER 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 3/126 (2%)

Query: 10  YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISV 69
           Y+VF+NFRG++ R SF  +L  K    +KI  F D+ ELR G  ++  L   I+ S+++V
Sbjct: 358 YQVFINFRGDELRNSFVGFLV-KAMRLEKINVFTDEVELR-GTNLN-YLFRRIEESRVAV 414

Query: 70  VIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQ 129
            IFS+ Y  S WCL+ELVK+ E       +++PVFY ++ +  +   G FGD    L+ +
Sbjct: 415 AIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWE 474

Query: 130 FEDKPE 135
           +  +PE
Sbjct: 475 YRSEPE 480

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 19  EDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYAS 78
           E+ R SF  +L   L        FID +     D +S    + ++ +++SV+I   +   
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD-----DSLSNESQSMVERARVSVMILPGNRTV 68

Query: 79  SKWCLNELVKILECKNTNGQIIIPVFYGVSPSD 111
           S   L++LVK+L+C+    Q+++PV YGV  S+
Sbjct: 69  S---LDKLVKVLDCQKNKDQVVVPVLYGVRSSE 98

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.963	0.104	0.647	4e-39
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.963	0.091	0.639	4e-39
359496034	1132	PREDICTED: TMV resistance protein N-like	0.985	0.118	0.555	5e-37
296090597	1201	unnamed protein product [Vitis vinifera]	0.985	0.111	0.555	6e-37
224113731	183	predicted protein [Populus trichocarpa]	0.904	0.672	0.616	6e-37
105923218	1617	TIR-NBS-LRR type disease resistance prot	0.919	0.077	0.587	1e-36
359493386	1239	PREDICTED: uncharacterized protein LOC10	0.904	0.099	0.554	1e-36
82542049	509	TIR-NBS disease resistance-like protein	0.904	0.241	0.616	1e-36
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.963	0.083	0.602	1e-36
356495059	1131	PREDICTED: putative disease resistance p	0.933	0.112	0.565	1e-36

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 106/136 (77%), Gaps = 5/136 (3%)

Query: 1   MASSSSSCN---YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPA 57
           MASSSS  +   Y+VFL+FRGEDTR +FT +LYD L   KKIKTFIDD  L RG+EI+PA
Sbjct: 1   MASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCR-KKIKTFIDDG-LERGEEITPA 58

Query: 58  LLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNG 117
           LL  I+ S+ISVVIFSK+YASS WC++ELVKILECK T GQI++PVFY V PSDV  Q G
Sbjct: 59  LLKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQTG 118

Query: 118 TFGDRFDELKKQFEDK 133
           +FG+ F EL+  F+ K
Sbjct: 119 SFGNAFSELENIFKGK 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 107/136 (78%), Gaps = 5/136 (3%)

Query: 1   MASSSSSCN---YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPA 57
           MASSS+  +   Y+VFL+FRG+DTR +FT +LYD L   KKIKTFIDD  L RG EI+PA
Sbjct: 1   MASSSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCR-KKIKTFIDDR-LERGGEITPA 58

Query: 58  LLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNG 117
           LL  I+ S+ISVVIFSK+YASS WC++ELVKILECK T GQI++PVFY V+PSDV  Q G
Sbjct: 59  LLKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQTG 118

Query: 118 TFGDRFDELKKQFEDK 133
           +FG+ F EL+K F+ K
Sbjct: 119 SFGNAFAELEKNFKGK 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 1   MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLN 60
           MA+S S   Y+VFL+FRGEDTR +FT +LYD L+  K I  FID ++LR G+ ISPALL+
Sbjct: 1   MATSYSQWKYDVFLSFRGEDTRNNFTAHLYDALH-CKGINAFIDADKLRIGEIISPALLS 59

Query: 61  AIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFG 120
           AI+GS+ S+V+ S++YASS+WCL ELVKILECK T GQ+++P+FY V PSDVR Q G++G
Sbjct: 60  AIEGSRFSIVVLSENYASSRWCLEELVKILECKKTKGQVVLPIFYQVDPSDVRKQKGSYG 119

Query: 121 DRFDELKKQFEDKPE 135
             F + ++  ++  E
Sbjct: 120 KAFAKHEENMKENME 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090597|emb|CBI40966.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 103/135 (76%), Gaps = 1/135 (0%)

Query: 1   MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLN 60
           MA+S S   Y+VFL+FRGEDTR +FT +LYD L+  K I  FID ++LR G+ ISPALL+
Sbjct: 1   MATSYSQWKYDVFLSFRGEDTRNNFTAHLYDALH-CKGINAFIDADKLRIGEIISPALLS 59

Query: 61  AIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFG 120
           AI+GS+ S+V+ S++YASS+WCL ELVKILECK T GQ+++P+FY V PSDVR Q G++G
Sbjct: 60  AIEGSRFSIVVLSENYASSRWCLEELVKILECKKTKGQVVLPIFYQVDPSDVRKQKGSYG 119

Query: 121 DRFDELKKQFEDKPE 135
             F + ++  ++  E
Sbjct: 120 KAFAKHEENMKENME 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113731|ref|XP_002332505.1| predicted protein [Populus trichocarpa] gi|222833238|gb|EEE71715.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 100/125 (80%), Gaps = 2/125 (1%)

Query: 10  YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISV 69
           Y+VFL+FRGEDTRK+FT +LY  L +   I TF DD+EL RG+EIS  LL AIQ SKIS+
Sbjct: 18  YDVFLSFRGEDTRKTFTDHLYTALVQAG-IHTFRDDDELPRGEEISDHLLRAIQESKISI 76

Query: 70  VIFSKDYASSKWCLNELVKILECKN-TNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKK 128
           V+FSK YASS+WCLNELV+IL+CKN   GQI++P+FY + PSDVR Q G+F + FD+ ++
Sbjct: 77  VVFSKGYASSRWCLNELVEILKCKNRKTGQIVLPIFYDIDPSDVRKQTGSFAEPFDKHEE 136

Query: 129 QFEDK 133
           +FE+K
Sbjct: 137 RFEEK 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 99/126 (78%), Gaps = 1/126 (0%)

Query: 10  YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISV 69
           Y+VFL+FRGEDTRK+FT +LY  L+  + I  F DD+ELRRG+EIS  LL AIQ SKIS+
Sbjct: 256 YDVFLSFRGEDTRKNFTDHLYTALHHAR-IHAFRDDDELRRGEEISLQLLKAIQESKISI 314

Query: 70  VIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQ 129
           V+FSK YASS WCL EL KIL+C++T GQI++PVFY + PSD+R Q G+F + FD  +++
Sbjct: 315 VVFSKGYASSTWCLAELEKILDCRHTTGQIVLPVFYDIDPSDIRKQTGSFAEAFDRHEER 374

Query: 130 FEDKPE 135
           F+++ E
Sbjct: 375 FKEEME 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493386|ref|XP_003634582.1| PREDICTED: uncharacterized protein LOC100256836 [Vitis vinifera]

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/137 (55%), Positives = 98/137 (71%), Gaps = 14/137 (10%)

Query: 1   MASSSSS-------------CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEE 47
           MASSS+S               Y+VFL+FRGEDTR +FT +LY  L +   I+TF DD+E
Sbjct: 1   MASSSNSKRPFYSSSSSNSKWRYDVFLSFRGEDTRNNFTSHLYKAL-DHANIETFKDDKE 59

Query: 48  LRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGV 107
           LRRGDEI+P LL AI+GS+I+++IFSK YA SKWCL+ELVKI+ECK   GQ + P+FY V
Sbjct: 60  LRRGDEIAPELLKAIEGSRIALIIFSKTYAHSKWCLDELVKIMECKEEKGQKVFPIFYHV 119

Query: 108 SPSDVRHQNGTFGDRFD 124
            PS+VR Q G +G+ F+
Sbjct: 120 EPSEVRKQTGIYGEAFN 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82542049|gb|ABB82032.1| TIR-NBS disease resistance-like protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 100/125 (80%), Gaps = 2/125 (1%)

Query: 10  YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISV 69
           Y+VFL+FRGEDTRK+FT +LY  L +   I TF DD+EL RG+EIS  LL AIQ SKIS+
Sbjct: 15  YDVFLSFRGEDTRKTFTDHLYTALVQAG-IHTFRDDDELPRGEEISDHLLRAIQESKISI 73

Query: 70  VIFSKDYASSKWCLNELVKILECKN-TNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKK 128
           V+FSK YASS+WCLNELV+IL+CKN   GQI++P+FY + PSDVR Q G+F + FD+ ++
Sbjct: 74  VVFSKGYASSRWCLNELVEILKCKNRKTGQIVLPIFYDIDPSDVRKQTGSFAEPFDKHEE 133

Query: 129 QFEDK 133
           +FE+K
Sbjct: 134 RFEEK 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 104/136 (76%), Gaps = 5/136 (3%)

Query: 1   MASSSSSCN---YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPA 57
           MASSS+      Y+VFL+FRG+DTR +FT +L   L   +KIKTFIDD  L RG+EI+PA
Sbjct: 1   MASSSAVARKWKYDVFLSFRGKDTRNNFTSHLCKDL-RRQKIKTFIDDR-LERGEEITPA 58

Query: 58  LLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNG 117
           LL  I+ S++S+VIFS++YASS WCL+ELVKILECK T GQI++PVFY V PSDV  Q G
Sbjct: 59  LLKTIEESRVSIVIFSENYASSPWCLDELVKILECKETYGQIVLPVFYHVDPSDVDEQTG 118

Query: 118 TFGDRFDELKKQFEDK 133
           +FG+ F EL+K F+ K
Sbjct: 119 SFGNAFSELEKNFKGK 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495059|ref|XP_003516398.1| PREDICTED: putative disease resistance protein At4g11170-like [Glycine max]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 98/129 (75%), Gaps = 2/129 (1%)

Query: 2   ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA 61
           A S     Y+VF+NFRGED R SF  YL +  Y+ K+I  F+DD+ L +GDEI P+L+ A
Sbjct: 10  ADSVPQIKYDVFVNFRGEDIRHSFLGYLTEAFYQ-KQINAFVDDK-LEKGDEIWPSLVGA 67

Query: 62  IQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGD 121
           IQGS IS+ IFS++Y SS+WCL+ELVKILEC+   GQI+IPVFYGV+P+DVRHQ G++G+
Sbjct: 68  IQGSSISLTIFSENYTSSRWCLDELVKILECREKYGQIVIPVFYGVNPTDVRHQKGSYGE 127

Query: 122 RFDELKKQF 130
              +L K++
Sbjct: 128 ALAQLGKKY 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.985	0.117	0.525	4.5e-31
TAIR|locus:2032713	363	AT1G72900 [Arabidopsis thalian	0.963	0.360	0.451	3.1e-28
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.963	0.090	0.518	8.1e-28
TAIR|locus:2024588	997	RLM1 "RESISTANCE TO LEPTOSPHAE	0.904	0.123	0.527	9.4e-28
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.970	0.101	0.514	1.8e-27
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.889	0.098	0.564	2.2e-27
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.948	0.469	0.461	2.8e-27
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.897	0.321	0.467	4.5e-27
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.948	0.347	0.453	7.3e-27
TAIR|locus:2039405	1109	AT2G16870 [Arabidopsis thalian	0.904	0.110	0.527	1.3e-26

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 354 (129.7 bits), Expect = 4.5e-31, P = 4.5e-31
 Identities = 72/137 (52%), Positives = 99/137 (72%)

Query:     1 MASSSSSC--NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPAL 58
             MASSSSS   +Y+VFL+FRGEDTRK+FT +LY+ L + K IKTF DD+ L  G  I   L
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLND-KGIKTFQDDKRLEYGATIPGEL 59

Query:    59 LNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGT 118
               AI+ S+ ++V+FS++YA+S+WCLNELVKI+ECK    Q +IP+FY V PS VR+Q  +
Sbjct:    60 CKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKES 119

Query:   119 FGDRFDELKKQFEDKPE 135
             F   F+E + +++D  E
Sbjct:   120 FAKAFEEHETKYKDDVE 136

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032713 AT1G72900 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/133 (45%), Positives = 95/133 (71%)

Query:     1 MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLN 60
             M+S++++ NY+VFL+FRG DTR+ F  +LY +L  G+ I+TF DD+EL  G  ISP L+ 
Sbjct:     1 MSSATATYNYDVFLSFRGPDTRRKFISFLYKELV-GRDIRTFKDDKELENGQMISPELIL 59

Query:    61 AIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQI-IIPVFYGVSPSDVRHQNGTF 119
             AI+ S+ +VV+ S +YA+S WCL+ELVKI++ +   G I ++P+FYGV+P  +R Q G  
Sbjct:    60 AIEDSRFAVVVVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDV 119

Query:   120 GDRFDELKKQFED 132
              ++F + + + +D
Sbjct:   120 AEQFKKHEAREKD 132

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 8.1e-28, P = 8.1e-28
 Identities = 70/135 (51%), Positives = 95/135 (70%)

Query:     1 MASSSSSCN--YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPAL 58
             MA+SSSS    Y+VF +F G D RK+F  +L + L +GK I TFID   + R   I+P L
Sbjct:     1 MAASSSSGRRRYDVFPSFSGVDVRKTFLSHLIEAL-DGKSINTFID-HGIERSRTIAPEL 58

Query:    59 LNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGT 118
             ++AI+ ++IS+VIFSK+YASS WCLNELV+I +C N  GQ++IPVFY V PS+VR Q G 
Sbjct:    59 ISAIREARISIVIFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGE 118

Query:   119 FGDRFDELKKQFEDK 133
             FG  F++  +  +DK
Sbjct:   119 FGKVFEKTCEVSKDK 133

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2024588 RLM1 "RESISTANCE TO LEPTOSPHAERIA MACULANS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 9.4e-28, P = 9.4e-28
 Identities = 68/129 (52%), Positives = 89/129 (68%)

Query:     1 MASSSSSCN----YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISP 56
             MASSSSS +    Y VF +F G D R SF  + + K +    I T  DD+ + RG+ ISP
Sbjct:     1 MASSSSSASRTWRYRVFTSFHGSDVRTSFLSH-FRKQFNNNGI-TMFDDQRILRGETISP 58

Query:    57 ALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQN 116
             AL  AI+ S+IS+V+ SK+YASS WCL+EL++IL+CK+  GQI++ VFYGV PSDVR Q 
Sbjct:    59 ALTQAIRESRISIVLLSKNYASSGWCLDELLEILKCKDDMGQIVMTVFYGVDPSDVRKQT 118

Query:   117 GTFGDRFDE 125
             G FG  F+E
Sbjct:   119 GEFGIAFNE 127

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 70/136 (51%), Positives = 94/136 (69%)

Query:     1 MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLN 60
             +ASSS S  Y+VF +FRGED R SF  +L  +L  GK I TFIDDE + R   I P LL+
Sbjct:     3 IASSSGSRRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAI-TFIDDE-IERSRSIGPELLS 59

Query:    61 AIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFG 120
             AI+ S+I++VIFSK+YASS WCLNELV+I +C     Q++IP+F+ V  S+V+ Q G FG
Sbjct:    60 AIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFG 119

Query:   121 DRFDEL-KKQFEDKPE 135
               F+E  K + ED+ +
Sbjct:   120 KVFEETCKAKSEDEKQ 135

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 70/124 (56%), Positives = 85/124 (68%)

Query:     1 MASSSS-SCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALL 59
             MASSSS S  Y+VF +F GED RKSF  +L  KL+  K I TFID+  + R   I+P LL
Sbjct:     1 MASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHR-KSINTFIDNN-IERSHAIAPDLL 58

Query:    60 NAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTF 119
             +AI  S IS+V+FSK YASS WCLNELV+I +C     QI+IP+FY V PSDVR Q   F
Sbjct:    59 SAINNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREF 118

Query:   120 GDRF 123
             G+ F
Sbjct:   119 GEFF 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 60/130 (46%), Positives = 89/130 (68%)

Query:     3 SSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI 62
             SS ++  Y+VFL+FRG DTR++F  +LY +L   +KI+TF DD+EL  G  ISP L  AI
Sbjct:     2 SSPTATKYDVFLSFRGLDTRRNFISFLYKELVR-RKIRTFKDDKELENGRRISPELKRAI 60

Query:    63 QGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDR 122
             + SK +VV+ S +YA+S WCL+ELVKI++ +N     ++P+FYGV P  +R Q G   ++
Sbjct:    61 EESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQ 120

Query:   123 FDELKKQFED 132
             F + + + ED
Sbjct:   121 FKKHEAREED 130

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 58/124 (46%), Positives = 88/124 (70%)

Query:     1 MASSSSSC-NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALL 59
             M+ SS++   ++VFL+FRG DTR+SF  +LY +L   + I+TF DD+EL+ G  I+P L+
Sbjct:     1 MSDSSNTLPKFDVFLSFRGLDTRRSFISFLYKELIR-RNIRTFKDDKELKNGRRITPELI 59

Query:    60 NAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTF 119
              AI+GS+ +VV+ S +YA+S+WCL ELVKI++ +N     ++P+FYGV P  VR Q G  
Sbjct:    60 RAIEGSRFAVVVVSVNYAASRWCLEELVKIMDFENMGSLKVMPIFYGVDPCHVRRQIGEV 119

Query:   120 GDRF 123
              ++F
Sbjct:   120 AEQF 123

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 59/130 (45%), Positives = 89/130 (68%)

Query:     3 SSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI 62
             +S ++  Y+VFL+FRG DTR++F  +LY K +  +KI+TF DD+EL  G  ISP L  AI
Sbjct:     2 TSPTATKYDVFLSFRGVDTRRNFISFLY-KEFVRRKIRTFKDDKELENGRRISPELKRAI 60

Query:    63 QGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDR 122
             + SK +VV+ S +YA+S WCL+ELVKI++ +N     ++P+FYGV P  +R Q G   ++
Sbjct:    61 EESKFAVVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQ 120

Query:   123 FDELKKQFED 132
             F + + + ED
Sbjct:   121 FKKHEAREED 130

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2039405 AT2G16870 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 67/127 (52%), Positives = 87/127 (68%)

Query:     1 MASSSSS--CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPAL 58
             MASSSSS   NY VF +F G D RKSF  + + K +    I T  DD+++ R   I+P+L
Sbjct:     1 MASSSSSRTWNYRVFASFHGPDVRKSFLSH-FRKQFICNGI-TMFDDQKIVRSQTIAPSL 58

Query:    59 LNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGT 118
                I+ SKIS+VI SK+YASS WCLNEL++IL+C+   GQI++ VFYGV PSDVR Q G 
Sbjct:    59 TQGIRESKISIVILSKNYASSTWCLNELLEILKCREDIGQIVMTVFYGVDPSDVRKQTGE 118

Query:   119 FGDRFDE 125
             FG  F++
Sbjct:   119 FGTVFNK 125

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIX000637 tir-nbs-lrr resistance protein (1254 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam01582	135	pfam01582, TIR, TIR domain	1e-39
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-37
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-35
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	1e-16
pfam13676	102	pfam13676, TIR_2, TIR domain	5e-09

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  129 bits (326), Expect = 1e-39
 Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 3/126 (2%)

Query: 12  VFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVI 71
           VF++F G+D R +F  +L  +L E K IK  IDD +   G+ I   L  AI+ S+ ++VI
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKEL-EEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVI 59

Query: 72  FSKDYASSKWCLNELVKILECKNT--NGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQ 129
           FS +YASS+WCL+ELV+I++C       ++I+P+FY V PSDVR Q+G FG  F +  K 
Sbjct: 60  FSSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKW 119

Query: 130 FEDKPE 135
             DK +
Sbjct: 120 SGDKED 125

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  133 bits (335), Expect = 5e-37
 Identities = 63/127 (49%), Positives = 86/127 (67%), Gaps = 4/127 (3%)

Query: 1   MASSSSSCN--YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPAL 58
            +SSSSS N  Y+VF +F GED R +F  +   +L + K I  F  D E+ R   + P L
Sbjct: 2   ASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKEL-DRKLIIAF-KDNEIERSQSLDPEL 59

Query: 59  LNAIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGT 118
             AI+ S+I+VV+FSK+YASS WCLNEL++I+ CK   GQ++IPVFYG+ PS VR Q G 
Sbjct: 60  KQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGD 119

Query: 119 FGDRFDE 125
           FG+ F++
Sbjct: 120 FGEAFEK 126

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  118 bits (297), Expect = 3e-35
 Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 5/129 (3%)

Query: 10  YEVFLNFRG-EDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKIS 68
           Y+VF+++ G ED R  F  +L +KL  G  +  FIDD E   GD     +  AI+ S+I+
Sbjct: 2   YDVFISYSGKEDVRNEFLSHLLEKLR-GYGLCVFIDDFEPGGGDLEE--IDEAIEKSRIA 58

Query: 69  VVIFSKDYASSKWCLNELVKILECK-NTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELK 127
           +V+ S +YA S+WCL+ELV  LE      G  +IP+FY V PSDVR Q G F   F +  
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 128 KQFEDKPEM 136
            ++ +  + 
Sbjct: 119 LKWPEDEKE 127

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 72.2 bits (177), Expect = 1e-16
 Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 5/111 (4%)

Query: 3   SSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI 62
           SSSS+   +VF+N RG DT+++    LYD L     ++ F+D++ ++ GD++   + +AI
Sbjct: 20  SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSR-LNLRPFLDNKNMKPGDKLFDKINSAI 78

Query: 63  QGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVR 113
           +  K+ V +FS  Y  S +CL+EL  I+E K      +IP+F  V PS +R
Sbjct: 79  RNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 49.9 bits (120), Expect = 5e-09
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 12  VFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVI 71
           VF+++   D  + +  +L D L E   I+ ++D  ++  G++    +  A++ + + +V+
Sbjct: 1   VFISYASAD--REWAEWLADAL-EAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVL 56

Query: 72  FSKDYASSKWCLNELVKILECKNTNGQIIIPVFYG 106
            S  Y +S WC  E    LE     G+ +IPV   
Sbjct: 57  LSPAYLASPWCRAEWGAALE----RGKRLIPVRLE 87

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.92
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.92
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.83
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.19
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.88
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.44
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.51
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	94.92
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	92.66
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	92.34
COG4271	233	Predicted nucleotide-binding protein containing TI	88.47
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	83.7
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	82.07
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	81.91

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=5.1e-37  Score=226.02  Aligned_cols=109  Identities=38%  Similarity=0.699  Sum_probs=102.9

Q ss_pred             CCCCCCCcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHh
Q 044631            2 ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKW   81 (136)
Q Consensus         2 ~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~w   81 (136)
                      +||+|+.+|||||||+++|+|++|+.||+.+|++ .||++|+|..++.+|+.+.+.|.+||++|+++|+||||+|++|.|
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~-~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W   97 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSR-LNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF   97 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHH-CCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence            3555666999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCEEEEEEeccCccccccc
Q 044631           82 CLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQ  115 (136)
Q Consensus        82 c~~El~~~~~~~~~~~~~iiPVf~~v~p~~v~~~  115 (136)
                      |++||..|+++.    ..||||||+|+|++|++|
T Consensus        98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q  127 (187)
T PLN03194         98 CLHELALIMESK----KRVIPIFCDVKPSQLRVV  127 (187)
T ss_pred             HHHHHHHHHHcC----CEEEEEEecCCHHHhhcc
Confidence            999999999863    479999999999999997

>PLN03210 Resistant to P

Probab=100.00  E-value=1.4e-35  Score=266.82  Aligned_cols=129  Identities=50%  Similarity=0.867  Sum_probs=121.9

Q ss_pred             CCCCCCCC---cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCC
Q 044631            1 MASSSSSC---NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYA   77 (136)
Q Consensus         1 ~~~~~~~~---~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~   77 (136)
                      ||+|||+.   +|||||||+++|+|+.|+.||+.+|.+ +||++|.|. ++..|+.+.+++.+||++|+++|+|||++|+
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~-~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya   78 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDR-KLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA   78 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHH-CCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence            67766644   999999999999999999999999999 999999987 5999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHhhcCCCCEEEEEEeccCccccccccCcHHHHHHHHHHHcc
Q 044631           78 SSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFE  131 (136)
Q Consensus        78 ~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~~~~~~  131 (136)
                      +|.||++||++|++|.++.+++|+||||+|+|++||+|+|.||++|.+++++..
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~  132 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT  132 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccc
Confidence            999999999999999988999999999999999999999999999999987644

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.92  E-value=4e-25  Score=155.11  Aligned_cols=122  Identities=39%  Similarity=0.705  Sum_probs=103.7

Q ss_pred             cccEEEeccc-CcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHH
Q 044631            9 NYEVFLNFRG-EDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELV   87 (136)
Q Consensus         9 ~yDVFISys~-~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~   87 (136)
                      .|||||||++ ++..+.|+.+|...|.. .|+.+|.|...+ .|..+ .+|.++|++|+++|+|+||+|+.|+||..|+.
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~-~~~~v~~d~~~~-~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~   77 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRG-YGLCVFIDDFEP-GGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELV   77 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhc-CCcEEEecCccc-ccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHH
Confidence            5999999999 34457899999999999 999999997643 33333 39999999999999999999999999999999


Q ss_pred             HHHHhhcC-CCCEEEEEEeccCccccccccCcHHHHHHHHHHHcccC
Q 044631           88 KILECKNT-NGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFEDK  133 (136)
Q Consensus        88 ~~~~~~~~-~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~~~~~~~~  133 (136)
                      .+++.... ...+||||+++..|+++..+.+.++.++..+...+..+
T Consensus        78 ~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~  124 (140)
T smart00255       78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPED  124 (140)
T ss_pred             HHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCc
Confidence            99987643 67899999999889889999999999998885555544

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.92  E-value=9.8e-27  Score=164.98  Aligned_cols=119  Identities=38%  Similarity=0.631  Sum_probs=104.1

Q ss_pred             EEEeccc-CcCchhHHHHHHHHHHcCC--CCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631           12 VFLNFRG-EDTRKSFTCYLYDKLYEGK--KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK   88 (136)
Q Consensus        12 VFISys~-~D~~~~fv~~L~~~L~~~~--gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~   88 (136)
                      |||||++ +| ++.|+.+|..+|++ .  |+++|++.+|+.+|..+.++|.++|++|+++|+|+|++|+.|+||+.|+..
T Consensus         1 vfisy~~~~d-~~~~~~~L~~~Le~-~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~   78 (141)
T PF01582_consen    1 VFISYSGKDD-REWFVSHLLPELEE-RPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQE   78 (141)
T ss_dssp             EEEEE-GHHG-HHHHHHCHHHHHHC-TSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHH
T ss_pred             cEEEeCCCCc-HHHHHHHHHHHHHh-CCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhh
Confidence            8999999 55 57899999999999 7  999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCC--CCEEEEEEeccCccccc-cccCcHHHHHHHHHHHccc
Q 044631           89 ILECKNTN--GQIIIPVFYGVSPSDVR-HQNGTFGDRFDELKKQFED  132 (136)
Q Consensus        89 ~~~~~~~~--~~~iiPVf~~v~p~~v~-~~~~~~~~~f~~~~~~~~~  132 (136)
                      |+++....  ...|+|||+++.+++++ .+++.|+..|....+..+.
T Consensus        79 a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~  125 (141)
T PF01582_consen   79 ALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDD  125 (141)
T ss_dssp             HHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSS
T ss_pred             hhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCC
Confidence            99987543  58999999999999999 6888888887765554443

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.83  E-value=3.9e-21  Score=128.77  Aligned_cols=87  Identities=31%  Similarity=0.582  Sum_probs=75.7

Q ss_pred             EEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHH
Q 044631           12 VFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILE   91 (136)
Q Consensus        12 VFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~   91 (136)
                      |||||+++|  ..+|..|...|+. .|+++|+|. ++.+|+.+.+.|..+|++|+++|+++|++|..|+||..|+..+.+
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~-~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLES-AGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHH-TT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred             eEEEecCCc--HHHHHHHHHHHhh-cCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence            899999999  4799999999999 999999997 899999999999999999999999999999999999999999844


Q ss_pred             hhcCCCCEEEEEEec
Q 044631           92 CKNTNGQIIIPVFYG  106 (136)
Q Consensus        92 ~~~~~~~~iiPVf~~  106 (136)
                          .+.+||||.++
T Consensus        77 ----~~~~iipv~~~   87 (102)
T PF13676_consen   77 ----RGKPIIPVRLD   87 (102)
T ss_dssp             ----TSESEEEEECS
T ss_pred             ----CCCEEEEEEEC
Confidence                34489999975

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.19  E-value=5.7e-11  Score=98.65  Aligned_cols=91  Identities=24%  Similarity=0.445  Sum_probs=79.1

Q ss_pred             CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCC--------C
Q 044631            8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYAS--------S   79 (136)
Q Consensus         8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~--------S   79 (136)
                      -+.||||||++.- ....++-|.-.|+. +|++||+|.+.+..|. +.+.+.+.|..++.+|+|++|+.+.        -
T Consensus       611 kq~DVFISYRRst-GnQLASLiKV~LQL-~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe  687 (832)
T KOG3678|consen  611 KQIDVFISYRRST-GNQLASLIKVLLQL-RGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE  687 (832)
T ss_pred             CCcceEEEeeccc-cHHHHHHHHHHHHh-cCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence            3899999998875 47899999999999 9999999999888775 6678899999999999999999763        4


Q ss_pred             HhHHHHHHHHHHhhcCCCCEEEEEEe
Q 044631           80 KWCLNELVKILECKNTNGQIIIPVFY  105 (136)
Q Consensus        80 ~wc~~El~~~~~~~~~~~~~iiPVf~  105 (136)
                      .|..+||..++++.+    .|||||-
T Consensus       688 DWVHKEl~~Afe~~K----NIiPI~D  709 (832)
T KOG3678|consen  688 DWVHKELKCAFEHQK----NIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHhcC----Ceeeeec
Confidence            788889888888765    7999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.88  E-value=5.3e-09  Score=73.25  Aligned_cols=91  Identities=23%  Similarity=0.373  Sum_probs=49.2

Q ss_pred             ccEEEecccCcCchhHHHHHHHHHHcCCC-------CeE-E---------eeCCcccCCCcchHHHHhchhcCcEEEEEe
Q 044631           10 YEVFLNFRGEDTRKSFTCYLYDKLYEGKK-------IKT-F---------IDDEELRRGDEISPALLNAIQGSKISVVIF   72 (136)
Q Consensus        10 yDVFISys~~D~~~~fv~~L~~~L~~~~g-------i~v-f---------~d~~~i~~G~~~~~~i~~aI~~S~~~I~vl   72 (136)
                      |.|||||++.|. ...+..|...+.. .+       +.. +         -+..+....+.|...|.++|..|+++||++
T Consensus         1 ~~vFIS~~~~d~-~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi   78 (130)
T PF08937_consen    1 YKVFISYSHDDD-DWYYDQLKEWLEN-SYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI   78 (130)
T ss_dssp             ----------TH-H-HHHHHHHHHHH--------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred             CCccccccccCc-HHHHHHHHHHhcc-ccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence            579999999994 2367777777766 31       211 1         122222234478889999999999999999


Q ss_pred             ecCCCCCHhHHHHHHHHHHhhcCCCCEEEEEEec
Q 044631           73 SKDYASSKWCLNELVKILECKNTNGQIIIPVFYG  106 (136)
Q Consensus        73 S~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~  106 (136)
                      +++...|.|+..|+..+++.    +..||.|.+.
T Consensus        79 g~~T~~s~wV~~EI~~A~~~----~~~Ii~V~~~  108 (130)
T PF08937_consen   79 GPNTAKSKWVNWEIEYALKK----GKPIIGVYLP  108 (130)
T ss_dssp             -TT----HHHHHHHHHHTTT-------EEEEETT
T ss_pred             CCCcccCcHHHHHHHHHHHC----CCCEEEEECC
Confidence            99999999999999998773    5588888764

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.44  E-value=1.7e-06  Score=61.46  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             cEEEecccCcCc-hhHHHHHHHHHHcCC-CCeEEeeCCcccC--CCcchHHHHhchhcCcEEEEEeecCC
Q 044631           11 EVFLNFRGEDTR-KSFTCYLYDKLYEGK-KIKTFIDDEELRR--GDEISPALLNAIQGSKISVVIFSKDY   76 (136)
Q Consensus        11 DVFISys~~D~~-~~fv~~L~~~L~~~~-gi~vf~d~~~i~~--G~~~~~~i~~aI~~S~~~I~vlS~~y   76 (136)
                      -|||||++.... ...|..|...|+. . |+.|.+|..+...  +..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~-~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQ-NCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHh-ccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            599999985532 3678999999999 8 9999999888743  66676677788999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.51  E-value=0.00046  Score=48.35  Aligned_cols=98  Identities=20%  Similarity=0.218  Sum_probs=71.3

Q ss_pred             cEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCC-------------
Q 044631           11 EVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYA-------------   77 (136)
Q Consensus        11 DVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~-------------   77 (136)
                      .|||.|+ .|  ...+..+..-|+. .|+.+.+-......|..+.+.+.+.+.+++.+|++++|+=.             
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~-~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~   76 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEK-LGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPR   76 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHh-CCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCccccccc
Confidence            4899998 55  3788899999998 88887655555689999999999999999999999999522             


Q ss_pred             CCHhHHHHHHHHHHhhcCCCCEEEEEEe-cc-Ccccccc
Q 044631           78 SSKWCLNELVKILECKNTNGQIIIPVFY-GV-SPSDVRH  114 (136)
Q Consensus        78 ~S~wc~~El~~~~~~~~~~~~~iiPVf~-~v-~p~~v~~  114 (136)
                      ....+..|+..++...  +..+++-+.- ++ .|+|+..
T Consensus        77 aR~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl~G  113 (125)
T PF10137_consen   77 ARQNVIFELGLFIGKL--GRERVFILVKGGVELPSDLSG  113 (125)
T ss_pred             cccceeehhhHHHhhc--CcceEEEEEcCCccCCcccCC
Confidence            2234677888887753  2334544443 22 3777654

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=94.92  E-value=0.12  Score=33.24  Aligned_cols=68  Identities=15%  Similarity=0.084  Sum_probs=49.0

Q ss_pred             cEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCH
Q 044631           11 EVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSK   80 (136)
Q Consensus        11 DVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~   80 (136)
                      .||||-.-.|- +.--..|.+.+.+ .|..+..-+.=-..+....+.+.+.|++|+++|.++...|-..+
T Consensus         1 rVFiSSt~~Dl-~~eR~~l~~~i~~-~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDL-KEERDALIEAIRR-LGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhH-HHHHHHHHHHHHH-CCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            38999887885 3445678888888 78776543221123556667889999999999999999987543

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=92.66  E-value=1.4  Score=29.49  Aligned_cols=69  Identities=13%  Similarity=0.027  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHcCCCCeEEeeCCc-c---cCCCcc----hHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHHhh
Q 044631           23 KSFTCYLYDKLYEGKKIKTFIDDEE-L---RRGDEI----SPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECK   93 (136)
Q Consensus        23 ~~fv~~L~~~L~~~~gi~vf~d~~~-i---~~G~~~----~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~~~   93 (136)
                      ..+...+.+.|++ .|+.++...+. .   ..+..+    ...-.++|++|+++|+++.+.- .+.-+..|+..|....
T Consensus        13 ~~~~~~~~~~L~~-~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~alg   89 (113)
T PF05014_consen   13 KARVERLREALEK-NGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALG   89 (113)
T ss_dssp             HHHHHHHHHHHHT-TTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh-CCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCC
Confidence            5788999999999 99999866521 1   112333    3444578999999999988765 6677888999987754

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=92.34  E-value=0.2  Score=39.43  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=63.6

Q ss_pred             CCCcccEEEecccCcCchhHHHHHHHHHHcC-CCCeEEeeCC---cccCCCcchHHHHhch-hcCcEEEEEeecCCCCCH
Q 044631            6 SSCNYEVFLNFRGEDTRKSFTCYLYDKLYEG-KKIKTFIDDE---ELRRGDEISPALLNAI-QGSKISVVIFSKDYASSK   80 (136)
Q Consensus         6 ~~~~yDVFISys~~D~~~~fv~~L~~~L~~~-~gi~vf~d~~---~i~~G~~~~~~i~~aI-~~S~~~I~vlS~~y~~S~   80 (136)
                      +...||+=|||.++-  ...|++...+++.- .-+..|+|-.   -+.+| ++.+-+...- ..|++.++.+..+|....
T Consensus       174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K~  250 (329)
T COG4916         174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICKS  250 (329)
T ss_pred             cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEee
Confidence            355899999999985  47999999999851 3345677642   12233 3333332222 368889999999999999


Q ss_pred             hHHHHHHHHHHhhcCCCCEEEEEEe
Q 044631           81 WCLNELVKILECKNTNGQIIIPVFY  105 (136)
Q Consensus        81 wc~~El~~~~~~~~~~~~~iiPVf~  105 (136)
                      ||.-|...+-...  .-+...||.|
T Consensus       251 ~c~~E~~~~r~~~--~~d~~~rI~~  273 (329)
T COG4916         251 TCHIEGLEGRLNP--ILDTGFRIKY  273 (329)
T ss_pred             eeccchhhccccc--cccccceEEE
Confidence            9999987653321  2345667766

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=88.47  E-value=1.5  Score=33.31  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=66.0

Q ss_pred             cEEEecccCcCchhHHHHHHHHHHcCCCC-eEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCC--------C---
Q 044631           11 EVFLNFRGEDTRKSFTCYLYDKLYEGKKI-KTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYA--------S---   78 (136)
Q Consensus        11 DVFISys~~D~~~~fv~~L~~~L~~~~gi-~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~--------~---   78 (136)
                      .|||-|++.    ..+.....+|.++.-. .+|.|. -...|..+.+.+++-|.+++.+|++.+|+=.        +   
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~  158 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAF  158 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhcc
Confidence            799999653    3677777777753443 467665 3678899999999999999999999999843        1   


Q ss_pred             ---CHhHHHHHHHHHHhhcCCCCEEEEEEec---c-Ccccccc
Q 044631           79 ---SKWCLNELVKILECKNTNGQIIIPVFYG---V-SPSDVRH  114 (136)
Q Consensus        79 ---S~wc~~El~~~~~~~~~~~~~iiPVf~~---v-~p~~v~~  114 (136)
                         ..-+..||...+.+.  ++.+++-+.-+   + .|+|+..
T Consensus       159 praRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~G  199 (233)
T COG4271         159 PRARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAG  199 (233)
T ss_pred             ccccccchhhHhhHHhhc--ccceEEEEecccccccCccccCc
Confidence               123567888887753  23344433321   2 3777764

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=83.70  E-value=5.6  Score=24.81  Aligned_cols=57  Identities=12%  Similarity=0.107  Sum_probs=37.3

Q ss_pred             ccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEEe
Q 044631           10 YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIF   72 (136)
Q Consensus        10 yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~vl   72 (136)
                      ++|+|...+.+. ...+..+...|++ .|+++-+|...    ..+...+..|-. +.+.+|+|-
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~-~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~iiig   59 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSD-AGIRVEVDLRN----EKLGKKIREAQLQKIPYILVVG   59 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHH-CCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEEC
Confidence            677777655543 4678899999999 99999988643    345555555543 344444443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=82.07  E-value=2.6  Score=26.90  Aligned_cols=47  Identities=17%  Similarity=0.211  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeec
Q 044631           23 KSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSK   74 (136)
Q Consensus        23 ~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~   74 (136)
                      ..++.+|.+.|+. .||++.+|..+    ..+...+..|-..=--+++|+.+
T Consensus        15 ~~~a~~l~~~L~~-~gi~v~~d~~~----~~~~k~~~~a~~~g~p~~iiiG~   61 (94)
T PF03129_consen   15 IEYAQELANKLRK-AGIRVELDDSD----KSLGKQIKYADKLGIPFIIIIGE   61 (94)
T ss_dssp             HHHHHHHHHHHHH-TTSEEEEESSS----STHHHHHHHHHHTTESEEEEEEH
T ss_pred             HHHHHHHHHHHHH-CCCEEEEECCC----CchhHHHHHHhhcCCeEEEEECc
Confidence            4688999999999 99999999754    44445555555433334444444

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=81.91  E-value=6.8  Score=24.53  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=39.2

Q ss_pred             ccEEEecccC---cCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecC
Q 044631           10 YEVFLNFRGE---DTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKD   75 (136)
Q Consensus        10 yDVFISys~~---D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~   75 (136)
                      ++|+|-..+.   .. ...+..+...|+. .|+.+.+|..    +..+...+..+-..--.+++++.++
T Consensus         2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~-~g~~v~~~~~----~~~~~k~~~~a~~~g~~~~iiig~~   64 (94)
T cd00738           2 IDVAIVPLTDPRVEA-REYAQKLLNALLA-NGIRVLYDDR----ERKIGKKFREADLRGVPFAVVVGED   64 (94)
T ss_pred             eEEEEEECCCCcHHH-HHHHHHHHHHHHH-CCCEEEecCC----CcCHhHHHHHHHhCCCCEEEEECCC
Confidence            5676665443   22 4678889999999 9999998764    3455566655554433456666653

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		3e-28
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		3e-27
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		3e-05

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Query: 2   ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA 61
           + S  S  YEVFL+FRG DTR+ FT +LY  L    KI TF DD+EL +G EI P LL A
Sbjct: 28  SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRR-YKIHTFRDDDELLKGKEIGPNLLRA 86
Query: 62  IQGSKISVVIFSKDYASSKWCLNELVKILECKNTNG-QIIIPVFYGVSPSDVRHQNGTFG 120
           I  SKI V I S  YA SKWCL EL +I+  +  +  +II+P+FY V PSDVRHQ G + 
Sbjct: 87  IDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYK 146
Query: 121 DRFDELKKQFE 131
             F +   +F+
Sbjct: 147 KAFRKHANKFD 157

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 3   SSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI 62
           SS ++  Y+VFL+FRG DTR +F  +LY +L   + I+TF DD+EL  G   SP L + I
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVR-RSIRTFKDDKELENGQRFSPELKSPI 60
Query: 63  QGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDR 122
           + S+ +VV+ S++YA+S WCL+ELV I++ +      ++P+FYGV P+ VR Q G   ++
Sbjct: 61  EVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120
Query: 123 F 123
           F
Sbjct: 121 F 121

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 2   ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA 61
           A  +S+  +++F++   ED +  F   L   L      + + DD  LR GD +  ++   
Sbjct: 13  ADLTSAPPHDIFISHAWED-KADFVEALAHTL-RAAGAEVWYDDFSLRPGDSLRRSIDKG 70
Query: 62  IQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGD 121
           +  S+  +V+ S  +   +W   EL  + + +++    I+P+++ VS  +V   + T  D
Sbjct: 71  LGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
Query: 122 RF 123
           + 
Sbjct: 131 KL 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-76
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	3e-73
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-69
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	7e-15

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  223 bits (572), Expect = 1e-76
 Identities = 53/131 (40%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 3   SSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAI 62
           SS ++  Y+VFL+FRG DTR +F  +LY +L   + I+TF DD+EL  G   SP L + I
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVR-RSIRTFKDDKELENGQRFSPELKSPI 60

Query: 63  QGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDR 122
           + S+ +VV+ S++YA+S WCL+ELV I++ +      ++P+FYGV P+ VR Q G   ++
Sbjct: 61  EVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120

Query: 123 FDELKKQFEDK 133
           F +   + + +
Sbjct: 121 FKKHASREDPE 131

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  216 bits (551), Expect = 3e-73
 Identities = 66/133 (49%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 2   ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA 61
           + S  S  YEVFL+FRG DTR+ FT +LY  L    KI TF DD+EL +G EI P LL A
Sbjct: 28  SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRR-YKIHTFRDDDELLKGKEIGPNLLRA 86

Query: 62  IQGSKISVVIFSKDYASSKWCLNELVKILECKNTNG-QIIIPVFYGVSPSDVRHQNGTFG 120
           I  SKI V I S  YA SKWCL EL +I+  +  +  +II+P+FY V PSDVRHQ G + 
Sbjct: 87  IDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYK 146

Query: 121 DRFDELKKQFEDK 133
             F +   +F+ +
Sbjct: 147 KAFRKHANKFDGQ 159

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  204 bits (520), Expect = 4e-69
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 2   ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA 61
           A  +S+  +++F++   ED +  F   L   L      + + DD  LR GD +  ++   
Sbjct: 13  ADLTSAPPHDIFISHAWED-KADFVEALAHTL-RAAGAEVWYDDFSLRPGDSLRRSIDKG 70

Query: 62  IQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGD 121
           +  S+  +V+ S  +   +W   EL  + + +++    I+P+++ VS  +V   + T  D
Sbjct: 71  LGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130

Query: 122 RFDELKKQF 130
           +        
Sbjct: 131 KLAFNTSTK 139

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 65.9 bits (161), Expect = 7e-15
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 2   ASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKK-IKTFIDDEELRRGDEISPALLN 60
            SS  S +Y+V +    ED        L   L      ++ F+   +   G  I   L  
Sbjct: 3   GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 61  AIQGSKISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVSPSDVR 113
           A+  S   V++ +  +    WC  ++++ L          IP+  G+S +   
Sbjct: 61  ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.95
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2js7_A	160	Myeloid differentiation primary response protein M	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.39
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.58
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	94.89
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	91.52
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	87.19
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	86.43

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=7.1e-44  Score=261.36  Aligned_cols=127  Identities=42%  Similarity=0.858  Sum_probs=104.6

Q ss_pred             CCCCCCCCcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCH
Q 044631            1 MASSSSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSK   80 (136)
Q Consensus         1 ~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~   80 (136)
                      |+|+ ++.+|||||||+++|+|+.|+.+|+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+
T Consensus         1 msss-~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~-~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~   78 (176)
T 3jrn_A            1 MSSH-TATKYDVFLSFRGHDTRHNFISFLYKELVR-RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS   78 (176)
T ss_dssp             -------CCEEEEEEECHHHHTTTHHHHHHHHHHH-TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCH
T ss_pred             CCCC-CCCCCeEEEECcCcccChHHHHHHHHHHHH-CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCCh
Confidence            5544 566999999999999988999999999999 99999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhcCCCCEEEEEEeccCccccccccCcHHHHHHHHHHH
Q 044631           81 WCLNELVKILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQ  129 (136)
Q Consensus        81 wc~~El~~~~~~~~~~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~~~~  129 (136)
                      ||++||..+++|.+.++++||||||+|+|++||+|+|.||++|.+++++
T Consensus        79 WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~  127 (176)
T 3jrn_A           79 WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR  127 (176)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc
Confidence            9999999999998888999999999999999999999999999999987

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=4e-43  Score=261.99  Aligned_cols=123  Identities=52%  Similarity=0.885  Sum_probs=118.0

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631            9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK   88 (136)
Q Consensus         9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~   88 (136)
                      +|||||||+++|+|+.|+.+|+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||++|+.|+||++||..
T Consensus        35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~-~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~  113 (204)
T 3ozi_A           35 EYEVFLSFRGPDTREQFTDFLYQSLRR-YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAE  113 (204)
T ss_dssp             CCCEEEEECHHHHTTTHHHHHHHHHHH-TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHH
T ss_pred             CCeEEEeccccCCCHHHHHHHHHHHHH-CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHH
Confidence            899999999999988999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcC-CCCEEEEEEeccCccccccccCcHHHHHHHHHHHccc
Q 044631           89 ILECKNT-NGQIIIPVFYGVSPSDVRHQNGTFGDRFDELKKQFED  132 (136)
Q Consensus        89 ~~~~~~~-~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~~~~~~~  132 (136)
                      |++|.+. ++++||||||+|+|++||+|+|.||++|.++++++.+
T Consensus       114 I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~  158 (204)
T 3ozi_A          114 IVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG  158 (204)
T ss_dssp             HHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH
T ss_pred             HHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH
Confidence            9999764 6899999999999999999999999999999988743

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=6.8e-36  Score=214.33  Aligned_cols=117  Identities=21%  Similarity=0.376  Sum_probs=109.7

Q ss_pred             CcccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHH
Q 044631            8 CNYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELV   87 (136)
Q Consensus         8 ~~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~   87 (136)
                      .+|||||||+++| ++.|+.+|+.+|++ .|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.|+.
T Consensus        19 ~~~dvFISy~~~D-~~~~~~~L~~~L~~-~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~   96 (154)
T 3h16_A           19 PPHDIFISHAWED-KADFVEALAHTLRA-AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD   96 (154)
T ss_dssp             CSEEEEEEEEGGG-TTTTHHHHHHHHHH-HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred             CCceEEEECcccC-hHHHHHHHHHHHHH-CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence            3899999999999 56899999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCEEEEEEeccCccccccccCcHHHHHHHH
Q 044631           88 KILECKNTNGQIIIPVFYGVSPSDVRHQNGTFGDRFDEL  126 (136)
Q Consensus        88 ~~~~~~~~~~~~iiPVf~~v~p~~v~~~~~~~~~~f~~~  126 (136)
                      .++++...++.+||||||+++|++|++|+|.|+++|..+
T Consensus        97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~  135 (154)
T 3h16_A           97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN  135 (154)
T ss_dssp             HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred             HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence            999987667789999999999999999999998776543

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.95  E-value=5.1e-29  Score=177.61  Aligned_cols=107  Identities=20%  Similarity=0.323  Sum_probs=79.3

Q ss_pred             CCCcccEEEecccCcCchhHHHHHHHHHHcC-CCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHH
Q 044631            6 SSCNYEVFLNFRGEDTRKSFTCYLYDKLYEG-KKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLN   84 (136)
Q Consensus         6 ~~~~yDVFISys~~D~~~~fv~~L~~~L~~~-~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~   84 (136)
                      ....|||||||+++|.  .||.+|..+|+++ .|+++|++.+++.||+.+.++|.++|++|+++|+|+|++|++|.||..
T Consensus         7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~   84 (146)
T 3ub2_A            7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY   84 (146)
T ss_dssp             TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred             CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence            3448999999999995  6899999999983 499999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCEEEEEEeccCcccccc
Q 044631           85 ELVKILECKNTNGQIIIPVFYGVSPSDVRH  114 (136)
Q Consensus        85 El~~~~~~~~~~~~~iiPVf~~v~p~~v~~  114 (136)
                      |+..|+.+...+..+||||++++++++++.
T Consensus        85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~  114 (146)
T 3ub2_A           85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPP  114 (146)
T ss_dssp             HHHHHHHTSSSSSSEEEEEECSCCGGGSCG
T ss_pred             HHHHHHHHHhhcCCcEEEEEcCCChhhCCH
Confidence            999999876334447889999988666543

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=1.9e-27  Score=169.73  Aligned_cols=103  Identities=17%  Similarity=0.316  Sum_probs=91.6

Q ss_pred             CcccEEEecccCcCchhHHHH-HHHHHHcCC--CCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHH
Q 044631            8 CNYEVFLNFRGEDTRKSFTCY-LYDKLYEGK--KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLN   84 (136)
Q Consensus         8 ~~yDVFISys~~D~~~~fv~~-L~~~L~~~~--gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~   84 (136)
                      ..|||||||+++|.  .||.+ |...|++ .  |+++|+|.+++.||+.+.++|.++|++|+++|+|+||+|++|.||..
T Consensus         4 ~~yDvFiSy~~~D~--~~v~~~L~~~Le~-~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~   80 (149)
T 1fyx_A            4 IXYDAFVSYSERDA--YWVENLMVQELEN-FNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY   80 (149)
T ss_dssp             CCEEEEEECCGGGH--HHHHTHHHHHHTT-SSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred             ccceEEEECCcccH--HHHHHHHHHHHhc-CCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence            47999999999995  79986 9999998 5  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-cCCCCEEEEEEec-cCccccc
Q 044631           85 ELVKILECK-NTNGQIIIPVFYG-VSPSDVR  113 (136)
Q Consensus        85 El~~~~~~~-~~~~~~iiPVf~~-v~p~~v~  113 (136)
                      |+..|+.+. ..++.+||||+|+ +.+..+.
T Consensus        81 El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           81 ELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999988643 4456789999994 6655554

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=1e-26  Score=167.93  Aligned_cols=100  Identities=20%  Similarity=0.300  Sum_probs=89.5

Q ss_pred             CCcccEEEecccCcCchhHHHHHHHHHHcC-CCCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEEeecCCCCCHhHHH
Q 044631            7 SCNYEVFLNFRGEDTRKSFTCYLYDKLYEG-KKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSKDYASSKWCLN   84 (136)
Q Consensus         7 ~~~yDVFISys~~D~~~~fv~~L~~~L~~~-~gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~vlS~~y~~S~wc~~   84 (136)
                      ...|||||||+++|  ..||.+|..+|++. .|+++|++.+++.||+.+.++|.++|+ +|+++|+|+|++|++|.||..
T Consensus        14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~   91 (160)
T 2js7_A           14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF   91 (160)
T ss_dssp             TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred             CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence            34899999999999  48999999999982 469999999999999999999999999 799999999999999999999


Q ss_pred             HHHHHHHhh-cCCCCEEEEEEeccC
Q 044631           85 ELVKILECK-NTNGQIIIPVFYGVS  108 (136)
Q Consensus        85 El~~~~~~~-~~~~~~iiPVf~~v~  108 (136)
                      |+..|+.+. ..++.+||||+|+.-
T Consensus        92 El~~a~~~~~~~~~~~vIpV~~~~~  116 (160)
T 2js7_A           92 QTKFALSLSPGAHQKRLIPIKYKAM  116 (160)
T ss_dssp             HHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred             HHHHHHHHHHccCCCEEEEEEEccc
Confidence            999999864 334568999999643

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=2.3e-26  Score=168.69  Aligned_cols=105  Identities=17%  Similarity=0.317  Sum_probs=88.2

Q ss_pred             CcccEEEecccCcCchhHHHH-HHHHHHc-CCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHH
Q 044631            8 CNYEVFLNFRGEDTRKSFTCY-LYDKLYE-GKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNE   85 (136)
Q Consensus         8 ~~yDVFISys~~D~~~~fv~~-L~~~L~~-~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~E   85 (136)
                      ..|||||||+++|.  .||.+ |...|++ +.|+++|+|.+++.||+.+.++|.++|++|+++|+|+||+|++|+||..|
T Consensus        34 ~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~E  111 (178)
T 2j67_A           34 VRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYE  111 (178)
T ss_dssp             CCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTH
T ss_pred             ccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHH
Confidence            38999999999994  89975 9999987 47999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-cCCCCEEEEEEec-cCcccccc
Q 044631           86 LVKILECK-NTNGQIIIPVFYG-VSPSDVRH  114 (136)
Q Consensus        86 l~~~~~~~-~~~~~~iiPVf~~-v~p~~v~~  114 (136)
                      +..|+.+. .+++.+||||+|+ +.+.+++.
T Consensus       112 l~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~  142 (178)
T 2j67_A          112 FYFAHHNLFHENSDHIILILLEPIPFYCIPT  142 (178)
T ss_dssp             HHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence            99998653 4456789999995 55544443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=8.7e-26  Score=162.87  Aligned_cols=100  Identities=19%  Similarity=0.296  Sum_probs=88.8

Q ss_pred             cccEEEecccCcC---------chhHHHHHHH-HHH-cCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCC
Q 044631            9 NYEVFLNFRGEDT---------RKSFTCYLYD-KLY-EGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYA   77 (136)
Q Consensus         9 ~yDVFISys~~D~---------~~~fv~~L~~-~L~-~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~   77 (136)
                      .|||||||+++|.         ++.||.+|.. .|+ + .|+++|++.+++.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus         2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~-~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKH-YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHT-SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCC-CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            5999999999995         3578888665 699 6 99999999999999999999999999999999999999997


Q ss_pred             -CCHhHHHHHHHHHHhh-cCCCCEEEEEEeccCc
Q 044631           78 -SSKWCLNELVKILECK-NTNGQIIIPVFYGVSP  109 (136)
Q Consensus        78 -~S~wc~~El~~~~~~~-~~~~~~iiPVf~~v~p  109 (136)
                       .|.||..|+..|+.+. .+++.+||||++.-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999875 5668899999986433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=3.3e-20  Score=160.75  Aligned_cols=98  Identities=18%  Similarity=0.368  Sum_probs=89.0

Q ss_pred             CcccEEEecccCcCchhHH-HHHHHHHHc----CCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhH
Q 044631            8 CNYEVFLNFRGEDTRKSFT-CYLYDKLYE----GKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWC   82 (136)
Q Consensus         8 ~~yDVFISys~~D~~~~fv-~~L~~~L~~----~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc   82 (136)
                      .+|||||||+++|.  .|| .+|...|+.    +.|+++|++++|+.||+.+.++|.++|++||.+|+|+|++|+.|+||
T Consensus       669 ~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc  746 (844)
T 3j0a_A          669 YKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWC  746 (844)
T ss_dssp             CCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTST
T ss_pred             eeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHH
Confidence            38999999999994  677 779999995    26899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-cCCCCEEEEEEecc
Q 044631           83 LNELVKILECK-NTNGQIIIPVFYGV  107 (136)
Q Consensus        83 ~~El~~~~~~~-~~~~~~iiPVf~~v  107 (136)
                      ..|+..|+.+. .+++++||||+|+.
T Consensus       747 ~~e~~~a~~~~~~~~~~~~i~i~~~~  772 (844)
T 3j0a_A          747 LEAFSYAQGRCLSDLNSALIMVVVGS  772 (844)
T ss_dssp             THHHHHHHSCCCCSSCTTEEEEESSC
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            99999998765 55678999999963

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.39  E-value=6e-07  Score=60.70  Aligned_cols=72  Identities=8%  Similarity=0.013  Sum_probs=53.7

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHH
Q 044631            9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNELVK   88 (136)
Q Consensus         9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~   88 (136)
                      +|.+||||+.+|.    ...|...|.. .|+..- |               ..|+.|+++|++.++....|+||..|+..
T Consensus         4 ~~~lFISh~~~d~----~~~L~~~l~~-~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            4 EIRLYITEGEVED----YRVFLERLEQ-SGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CEEEEECCCCSHH----HHHHHHHHHH-HCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             eEEEEEecccHhH----HHHHHHHHhC-CCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            6999999999982    3334444434 565332 1               78999999999999999999999999987


Q ss_pred             HHHhhcCCCCEEEEEEe
Q 044631           89 ILECKNTNGQIIIPVFY  105 (136)
Q Consensus        89 ~~~~~~~~~~~iiPVf~  105 (136)
                      |.+    .+.+|+-|.-
T Consensus        63 A~~----~gkpIigV~~   75 (111)
T 1eiw_A           63 ARK----SSKPIITVRP   75 (111)
T ss_dssp             HTT----TTCCEEEECC
T ss_pred             HHH----cCCCEEEEEc
Confidence            754    3456777754

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.58  E-value=0.00041  Score=50.53  Aligned_cols=105  Identities=22%  Similarity=0.237  Sum_probs=71.6

Q ss_pred             ccEEEec--------------ccCcCchhHHHHHHHHHHcCCCCeEEeeCCcc----cC----CCcchHHHHhchhcCcE
Q 044631           10 YEVFLNF--------------RGEDTRKSFTCYLYDKLYEGKKIKTFIDDEEL----RR----GDEISPALLNAIQGSKI   67 (136)
Q Consensus        10 yDVFISy--------------s~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i----~~----G~~~~~~i~~aI~~S~~   67 (136)
                      --+|++|              ..+|.  .+...|..--.. ..+-.|.|.++.    .-    -..|...+.+.|..|+.
T Consensus         6 n~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n-~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            6 NANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGE-DNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHH-CTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             cCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcC-CCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            3478888              45553  455566655555 445566776543    22    34577889999999999


Q ss_pred             EEEEeecCCCCCHhHHHHHHHHHHhhcCCCCEEEEEEeccC-ccccccccCcHH
Q 044631           68 SVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYGVS-PSDVRHQNGTFG  120 (136)
Q Consensus        68 ~I~vlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~-p~~v~~~~~~~~  120 (136)
                      +|+++|++...|.|...|+..+++   ..+.+||-|..+-+ .+++..-.|.|.
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~  133 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK  133 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred             EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence            999999999999999999998873   23568888876633 334443334433

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=94.89  E-value=0.24  Score=34.91  Aligned_cols=76  Identities=9%  Similarity=0.078  Sum_probs=53.4

Q ss_pred             hhHHHHHHHHHHcCCCCeEEeeCCccc-CCCcchHHHHhchhcCcEEEEEeec--CCCCCHhHHHHHHHHHHhhcCCCCE
Q 044631           23 KSFTCYLYDKLYEGKKIKTFIDDEELR-RGDEISPALLNAIQGSKISVVIFSK--DYASSKWCLNELVKILECKNTNGQI   99 (136)
Q Consensus        23 ~~fv~~L~~~L~~~~gi~vf~d~~~i~-~G~~~~~~i~~aI~~S~~~I~vlS~--~y~~S~wc~~El~~~~~~~~~~~~~   99 (136)
                      ..+...+.+.|+. +|+.||.-.++-. .+..+.+.=.++|++|+++|++++|  .-..+.-+..|+..+....+    +
T Consensus        26 ~~~~~~l~~~l~~-~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK----P  100 (161)
T 2f62_A           26 ASYYNKVRELLKK-ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK----M  100 (161)
T ss_dssp             HHHHHHHHHHHHT-TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC----E
T ss_pred             HHHHHHHHHHHHH-CCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC----E
Confidence            3788999999999 9999987533211 1122233337899999999999997  44455668889999887543    5


Q ss_pred             EEEE
Q 044631          100 IIPV  103 (136)
Q Consensus       100 iiPV  103 (136)
                      |+-+
T Consensus       101 Vi~l  104 (161)
T 2f62_A          101 VLTF  104 (161)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=91.52  E-value=1.6  Score=30.48  Aligned_cols=88  Identities=18%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             CCCCCCCCcccEEEecccCcCc--hhHHHHHHHHHHcCCCCeEEeeCCcc----cCCC-------cchHHHHhchhcCcE
Q 044631            1 MASSSSSCNYEVFLNFRGEDTR--KSFTCYLYDKLYEGKKIKTFIDDEEL----RRGD-------EISPALLNAIQGSKI   67 (136)
Q Consensus         1 ~~~~~~~~~yDVFISys~~D~~--~~fv~~L~~~L~~~~gi~vf~d~~~i----~~G~-------~~~~~i~~aI~~S~~   67 (136)
                      |+..+-+.+..|||+=.-...+  ......+.+.|++ .| .|+.+..-.    ..|.       .+...-.+.|++|++
T Consensus         3 ~~~~~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~-~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~   80 (165)
T 2khz_A            3 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRR-YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADV   80 (165)
T ss_dssp             CCCCSSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHH-HS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSE
T ss_pred             cccCCCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHh-cC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCE
Confidence            5555555577899984333111  2256899999999 99 886543210    1221       122333488999999


Q ss_pred             EEEEeecCCCCCHhHHHHHHHHHHhh
Q 044631           68 SVVIFSKDYASSKWCLNELVKILECK   93 (136)
Q Consensus        68 ~I~vlS~~y~~S~wc~~El~~~~~~~   93 (136)
                      +|++++   ..+.-+..|+..+....
T Consensus        81 vva~~~---~~d~Gt~~EiGyA~alg  103 (165)
T 2khz_A           81 VVAEVT---QPSLGVGYELGRAVALG  103 (165)
T ss_dssp             EEEECS---SCCHHHHHHHHHHHHTC
T ss_pred             EEEECC---CCCCCHHHHHHHHHHCC
Confidence            999997   56777899999987753

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=87.19  E-value=2.7  Score=29.57  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHcC-CCCeEEeeCCcc----cCCCcch----HHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHHhh
Q 044631           23 KSFTCYLYDKLYEG-KKIKTFIDDEEL----RRGDEIS----PALLNAIQGSKISVVIFSKDYASSKWCLNELVKILECK   93 (136)
Q Consensus        23 ~~fv~~L~~~L~~~-~gi~vf~d~~~i----~~G~~~~----~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~~~   93 (136)
                      ..+..++.++|+.. .|+.+|.-.++-    .++..|.    ..=.++|.+|+++|.++. ....+..+..|+..+....
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g   97 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG   97 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence            35778899999972 389888554332    1233343    344467999999999995 3446788999999988754


Q ss_pred             cCCCCEEEEEE
Q 044631           94 NTNGQIIIPVF  104 (136)
Q Consensus        94 ~~~~~~iiPVf  104 (136)
                          .+|+.+.
T Consensus        98 ----kPVi~~~  104 (162)
T 3ehd_A           98 ----IPVVALY  104 (162)
T ss_dssp             ----CCEEEEC
T ss_pred             ----CEEEEEE
Confidence                3555553

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=86.43  E-value=2.6  Score=29.34  Aligned_cols=66  Identities=20%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHHcCCCCeEEeeC---Ccc-cCCC-------cchHHHHhchhcCcEEEEEeecCCCCCHhHHHHHHHHHH
Q 044631           23 KSFTCYLYDKLYEGKKIKTFIDD---EEL-RRGD-------EISPALLNAIQGSKISVVIFSKDYASSKWCLNELVKILE   91 (136)
Q Consensus        23 ~~fv~~L~~~L~~~~gi~vf~d~---~~i-~~G~-------~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El~~~~~   91 (136)
                      ..+...+.+.|++ .| .|+-..   .++ ..|+       .+.+.-.++|++|+++|.+++   ..|.-...|+..|..
T Consensus        18 ~~~~~~i~~~L~~-~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~a   92 (152)
T 4fyk_A           18 QALYARIVSRLRR-YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVA   92 (152)
T ss_dssp             HHHHHHHHHHHTT-TS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHH
Confidence            3677999999999 99 675321   111 1121       244555688999999999988   667888999999887


Q ss_pred             hh
Q 044631           92 CK   93 (136)
Q Consensus        92 ~~   93 (136)
                      ..
T Consensus        93 lg   94 (152)
T 4fyk_A           93 LG   94 (152)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	6e-19
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-18

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 6e-19
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 5   SSSCNYEVFLNFRGEDTRKSFTCYLYDKLYEG-KKIKTFIDDEELRRGDEISPALLNAIQ 63
           S +  Y+ F+++   D        +  +L       K  +   +   G  I   ++++I+
Sbjct: 1   SRNICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIE 59

Query: 64  GSKISVVIFSKDYASSKWCLNELVKIL-ECKNTNGQIIIPVFYGVSPSDVRHQ 115
            S  +V + S+++  S+WC  EL        + N    I +           Q
Sbjct: 60  KSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 2e-18
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 10  YEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISV 69
           +  F+++ G D+       L   L E + ++  + +     G  I   ++  I+ S  S+
Sbjct: 13  FHAFISYSGHDSFW-VKNELLPNL-EKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 70  VIFSKDYASSKWCLNELVKILECK-NTNGQIIIPVFYGVSPSDVRHQ 115
            + S ++  S+WC  EL        +     +I +     P      
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPS 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.91
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.89
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	93.25
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	92.45
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	85.87
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	83.4
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	82.77
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.33
d1atia1	111	Glycyl-tRNA synthetase (GlyRS), C-terminal domain	81.53

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-25  Score=160.02  Aligned_cols=96  Identities=18%  Similarity=0.405  Sum_probs=88.3

Q ss_pred             CcccEEEecccCcCchhHH-HHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHHHH
Q 044631            8 CNYEVFLNFRGEDTRKSFT-CYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLNEL   86 (136)
Q Consensus         8 ~~yDVFISys~~D~~~~fv-~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~El   86 (136)
                      .+|||||||+++|.  .|| ..|...|++ +|+++|+|.+++.+|+.+.++|.++|++|+++|+|+||+|+.|.||..|+
T Consensus        11 ~~yDvFisys~~D~--~~v~~~L~~~Le~-~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~   87 (161)
T d1fyva_          11 LQFHAFISYSGHDS--FWVKNELLPNLEK-EGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYEL   87 (161)
T ss_dssp             CCEEEEEECCGGGH--HHHHHTHHHHHHT-TTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHH
T ss_pred             CeeEEEEecChhHH--HHHHHHHHHHHHh-CCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHH
Confidence            38999999999994  677 579999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh-cCCCCEEEEEEec
Q 044631           87 VKILECK-NTNGQIIIPVFYG  106 (136)
Q Consensus        87 ~~~~~~~-~~~~~~iiPVf~~  106 (136)
                      ..++.+. ..+..++|||+++
T Consensus        88 ~~a~~~~~~~~~~~lIpV~l~  108 (161)
T d1fyva_          88 YFAHHNLFHEGSNSLILILLE  108 (161)
T ss_dssp             HTTSCCCSCSSCSSEEEEESS
T ss_pred             HHHHHHHHHcCCCceeEEEEe
Confidence            9998764 4556789999996

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.1e-25  Score=155.16  Aligned_cols=104  Identities=17%  Similarity=0.363  Sum_probs=89.4

Q ss_pred             CCcccEEEecccCcCchhHH-HHHHHHHHc-CCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCCCCHhHHH
Q 044631            7 SCNYEVFLNFRGEDTRKSFT-CYLYDKLYE-GKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLN   84 (136)
Q Consensus         7 ~~~yDVFISys~~D~~~~fv-~~L~~~L~~-~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~~S~wc~~   84 (136)
                      +..|||||||+++|  ..|| ..|...|++ ..|+++|+|.+++.+|+.+.++|.++|++|+++|+|+||+|+.|.||..
T Consensus         3 ~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~   80 (149)
T d1fyxa_           3 NICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY   80 (149)
T ss_dssp             SCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred             CCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHH
Confidence            34899999999999  3677 468999986 2599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-cCCCCEEEEEEec-cCcccc
Q 044631           85 ELVKILECK-NTNGQIIIPVFYG-VSPSDV  112 (136)
Q Consensus        85 El~~~~~~~-~~~~~~iiPVf~~-v~p~~v  112 (136)
                      |+..++... ++++.++|||+++ +....+
T Consensus        81 E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~  110 (149)
T d1fyxa_          81 ELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHcCCceEEEEEeccCchhhc
Confidence            999887654 4567789999996 443333

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.25  E-value=0.14  Score=31.16  Aligned_cols=60  Identities=20%  Similarity=0.138  Sum_probs=43.7

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeec
Q 044631            9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSK   74 (136)
Q Consensus         9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~   74 (136)
                      ..+|||+.-++.. ...+..|...|+. .||++-+|..    +..+...+..|-..---+++++.+
T Consensus         3 ~~~V~i~~~g~~~-~~~~~~l~~~Lr~-~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           3 KKSVYICRVGKIN-SSIMNEYSRKLRE-RGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SCEEEEEEESSCC-HHHHHHHHHHHHT-TTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CceEEEEEeCHHH-HHHHHHHHHHHHH-CCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCC
Confidence            4689999988875 5789999999999 9999999864    345666666665533334444444

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.45  E-value=0.43  Score=31.60  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHHHcCCCCeEEeeCCc-ccCCCcchHHHHhchhcCcEEEEEeec--CCCCCHhHHHHHHHHHHhhc
Q 044631           23 KSFTCYLYDKLYEGKKIKTFIDDEE-LRRGDEISPALLNAIQGSKISVVIFSK--DYASSKWCLNELVKILECKN   94 (136)
Q Consensus        23 ~~fv~~L~~~L~~~~gi~vf~d~~~-i~~G~~~~~~i~~aI~~S~~~I~vlS~--~y~~S~wc~~El~~~~~~~~   94 (136)
                      ..+...+...|+. +|+.++.-.++ ......|...-.++|++|+++|.+++|  .-..+.=+..|+..+....+
T Consensus        18 ~~~~~~i~~~l~~-~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          18 ASYYNKVRELLKK-ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             HHHHHHHHHHHHT-TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH-CCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            4688899999999 99999864332 122233555666889999999999985  33456678899999987643

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.87  E-value=0.55  Score=27.98  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEee
Q 044631            9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS   73 (136)
Q Consensus         9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS   73 (136)
                      ..||||.--+.+. ...+..|...|+. .|+++-+|..    +..+...+..|=..---+++|+.
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~-~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG   62 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRH-NGIKADKDYL----QRKIKGQMKQADRLGAKFTIVIG   62 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHT-TTCCEEECCS----CCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHH-CCCcEEecCC----CCCHHHHHHHHHhcCCCEEEEEc
Confidence            4799998766553 5788999999999 9999998854    34566666666554333444443

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=83.40  E-value=2.6  Score=27.55  Aligned_cols=89  Identities=15%  Similarity=0.126  Sum_probs=54.6

Q ss_pred             ccEEEe---cccCcCchhHHHHHHHHHHcCC----CCeEEeeCCc----ccCC--------Cc----chHHHHhchhcCc
Q 044631           10 YEVFLN---FRGEDTRKSFTCYLYDKLYEGK----KIKTFIDDEE----LRRG--------DE----ISPALLNAIQGSK   66 (136)
Q Consensus        10 yDVFIS---ys~~D~~~~fv~~L~~~L~~~~----gi~vf~d~~~----i~~G--------~~----~~~~i~~aI~~S~   66 (136)
                      +.|||.   |+..+  ..+..++.+.|++ +    |..+|.-.++    ...+        ..    +...=.++|++|+
T Consensus         3 k~IYlAgP~F~~~q--~~~~~~~~~~L~~-~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD   79 (156)
T d1f8ya_           3 KTIYFGAGWFTDRQ--NKAYKEAMEALKE-NPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND   79 (156)
T ss_dssp             BCEEEECCCSSHHH--HHHHHHHHHHHHH-CTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSS
T ss_pred             ceEEEECCCCCHHH--HHHHHHHHHHHHh-ccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCC
Confidence            455554   33333  4678899999987 4    4556532211    1111        11    2233368899999


Q ss_pred             EEEEEeecCCCCCHhHHHHHHHHHHhhcCCCCEEEEEEec
Q 044631           67 ISVVIFSKDYASSKWCLNELVKILECKNTNGQIIIPVFYG  106 (136)
Q Consensus        67 ~~I~vlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~  106 (136)
                      ++|+++..... ..-+..|+..+....+    +||-+.-+
T Consensus        80 ~via~ldg~~~-D~Gta~EiG~A~a~gK----pvi~~~~~  114 (156)
T d1f8ya_          80 IMLGVYIPDEE-DVGLGMELGYALSQGK----YVLLVIPD  114 (156)
T ss_dssp             EEEEECCGGGC-CHHHHHHHHHHHHTTC----EEEEEECG
T ss_pred             EEEEEeCCCCC-CCCHHHHHHHHHHcCC----cEEEEecC
Confidence            99999986543 4567889999887543    66655443

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.77  E-value=1.7  Score=26.46  Aligned_cols=63  Identities=11%  Similarity=0.052  Sum_probs=40.3

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhchhcCcEEEEEeecCCC
Q 044631            9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSKDYA   77 (136)
Q Consensus         9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~aI~~S~~~I~vlS~~y~   77 (136)
                      -++|.|.-=+++ ...++..|++.|+. .||++.+|.++-    .+...+.+|-..---.++|+.++-+
T Consensus         7 P~Qv~iipi~~~-~~~~a~~i~~~Lr~-~gi~v~~d~~~~----~l~~ki~~a~~~g~p~~iiiG~~E~   69 (110)
T d1qf6a1           7 PVQVVIMNITDS-QSEYVNELTQKLSN-AGIRVKADLRNE----KIGFKIREHTLRRVPYMLVCGDKEV   69 (110)
T ss_dssp             SSCEEEEESSHH-HHHHHHHHHHHHHT-TTCCEEEECCSS----CHHHHHHHHHHTTCSEEEEECTTTG
T ss_pred             CceEEEEeccHH-HHHHHHHHHHHHHH-hhccccccCCcc----chhHHHHHHHHcCCCEEEEECchHH
Confidence            466766543333 35789999999999 999999997643    4445555554433335555555433

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.33  E-value=0.83  Score=27.39  Aligned_cols=57  Identities=23%  Similarity=0.427  Sum_probs=41.0

Q ss_pred             cccEEEecccCcCchhHHHHHHHHHHcCC--CCeEEeeCCcccCCCcchHHHHhchh-cCcEEEEE
Q 044631            9 NYEVFLNFRGEDTRKSFTCYLYDKLYEGK--KIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVI   71 (136)
Q Consensus         9 ~yDVFISys~~D~~~~fv~~L~~~L~~~~--gi~vf~d~~~i~~G~~~~~~i~~aI~-~S~~~I~v   71 (136)
                      ..||||..-+++. ...+-.|.+.|++ .  |+++-+|..    +..+...+..|-. +++.+|++
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~-~~~gi~v~~~~~----~~~l~kq~k~A~~~~~~~~iii   62 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRD-ELPGVKLMTNHG----GGNFKKQFARADKWGARVAVVL   62 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHH-HSTTCCEEECCS----CCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHh-cCCCeEEEEeCC----CCCHHHHHHHHHHhCCChhhhc
Confidence            4799998877654 5788999999988 5  999998864    3456666666655 45555443

>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.53  E-value=0.29  Score=30.47  Aligned_cols=39  Identities=8%  Similarity=0.007  Sum_probs=31.1

Q ss_pred             chhHHHHHHHHHHcCCCCeEEeeCCcccCCCcchHHHHhc
Q 044631           22 RKSFTCYLYDKLYEGKKIKTFIDDEELRRGDEISPALLNA   61 (136)
Q Consensus        22 ~~~fv~~L~~~L~~~~gi~vf~d~~~i~~G~~~~~~i~~a   61 (136)
                      ...++..|++.|.. .|+++.+|.++..+|..+.+.-..+
T Consensus        19 ~~~~a~~l~~~L~~-~gi~v~~Ddr~~~~G~K~~~~~~~g   57 (111)
T d1atia1          19 ITEYAKRLKARLLA-LGLGRVLYEDTGNIGKAYRRHDEVG   57 (111)
T ss_dssp             HHHHHHHHHHHHHT-TCSSCEEECCCSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhcc-ccceeEeecCCCCHHHHHHHHHHcC
Confidence            35788999999999 9999999998878887666544333