Citrus Sinensis ID: 044651

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
NPIFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMKSQS
ccEEEcccccccccccEEEEEccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEcHHHHHHHHHHHHcccccccEEccccccHHHHccccccEEEccccccccccccccccccccEEEEEEEEccccccEEEEEEEEccccccccEEEEccccccccccccccccEEEcccccccccccc
ccEEEcccccccccccEEEEEccccccccccEEEcccEEccccccccccccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHHcccccEEEEEccccccEEEEEcccEccccEEEEcccEEEEHHHHHHHHccccccccccEEEEcccccccccccccccEEEEccccccHHHEEEccccccccEEEEEEEEcccccccEEEEEEEcccccccEEEEEccccccccccccccEEccccccHccccccc
npifveditrgeekqpisllnengtselpkfLYISKNTVYKNAHVNFSLarigdencclncsgnclsapancactsetrgdFAYTAAGLLDEKFLRESIAIIRRKNdkkhlfycencplenrlvngnrnhkrkrsvkpckghLMRKFIKECWakcgcslncgnrvvQRGITVKLQVFQasegkgwgvrTLEALEKGTFVCEYVGEvvtnqelderneefsgdrhtypvlldadwaserflkDEEALCLDAtkfgnvarfinhrcydanlieipveietpdhhyyhVAFFTTRKVEVNeelnwdygidfsdethpikafdckcgsffcsmksqs
npifveditrgeekqpisllnengtseLPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENcplenrlvngnrnhkrkrsvkpckghLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQvfqasegkgwgvRTLEALEKGTFVCEYVGEVvtnqelderneefsgdrhtypVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMKSQS
NPIFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDEncclncsgnclsAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMKSQS
**************************ELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGN********VKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELD*****FSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFCS*****
NPIFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSF*CSM****
NPIFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNR**********CKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMKSQS
NPIFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSF********
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NPIFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDCKCGSFFCSMKSQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
Q8W595492 Histone-lysine N-methyltr yes no 0.942 0.638 0.591 1e-112
Q9FNC7717 Histone-lysine N-methyltr no no 0.942 0.437 0.512 2e-91
Q946J2734 Histone-lysine N-methyltr no no 0.951 0.431 0.512 2e-90
Q9Z1481263 Histone-lysine N-methyltr yes no 0.780 0.205 0.304 4e-33
Q96KQ71210 Histone-lysine N-methyltr yes no 0.525 0.144 0.4 4e-32
Q9H9B11298 Histone-lysine N-methyltr no no 0.780 0.200 0.319 6e-32
Q5DW341296 Histone-lysine N-methyltr no no 0.507 0.130 0.417 2e-31
Q294B9633 Histone-lysine N-methyltr yes no 0.516 0.271 0.403 7e-31
Q28CQ7406 Histone-lysine N-methyltr no no 0.582 0.477 0.361 1e-29
Q9C5P4669 Histone-lysine N-methyltr no no 0.798 0.397 0.283 9e-29
>sp|Q8W595|SUVR4_ARATH Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2 Back     alignment and function desciption
 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 239/323 (73%), Gaps = 9/323 (2%)

Query: 5   VEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGN 64
           + DIT+G E   I L+++ G+  +PKF YI  N VY++A+++ SLARI DE+CC NC GN
Sbjct: 144 IADITKGSESVKIPLVDDVGSEAVPKFTYIPHNIVYQSAYLHVSLARISDEDCCANCKGN 203

Query: 65  CLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLV 124
           CLSA   C C  ET G++AYT  GLL EKFL ++   ++++ D     YC++CPLE    
Sbjct: 204 CLSADFPCTCARETSGEYAYTKEGLLKEKFL-DTCLKMKKEPDSFPKVYCKDCPLE---- 258

Query: 125 NGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKG 184
              R+H  K +   C GHL+RKFIKECW KCGC + CGNRVVQRGI  +LQV+   EGKG
Sbjct: 259 ---RDHD-KGTYGKCDGHLIRKFIKECWRKCGCDMQCGNRVVQRGIRCQLQVYFTQEGKG 314

Query: 185 WGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEE 244
           WG+RTL+ L KGTF+CEY+GE++TN EL +RN   S +RHTYPV LDADW SE+ LKDEE
Sbjct: 315 WGLRTLQDLPKGTFICEYIGEILTNTELYDRNVRSSSERHTYPVTLDADWGSEKDLKDEE 374

Query: 245 ALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDY 304
           ALCLDAT  GNVARFINHRC DAN+I+IP+EIETPD HYYH+AFFT R V+  +EL WDY
Sbjct: 375 ALCLDATICGNVARFINHRCEDANMIDIPIEIETPDRHYYHIAFFTLRDVKAMDELTWDY 434

Query: 305 GIDFSDETHPIKAFDCKCGSFFC 327
            IDF+D++HP+KAF C CGS  C
Sbjct: 435 MIDFNDKSHPVKAFRCCCGSESC 457
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9FNC7|SUVR2_ARATH Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2 PE=2 SV=2 Back     alignment and function description
>sp|Q946J2|SUVR1_ARATH Histone-lysine N-methyltransferase SUVR1 OS=Arabidopsis thaliana GN=SUVR1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Z148|EHMT2_MOUSE Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus GN=Ehmt2 PE=1 SV=2 Back     alignment and function description
>sp|Q96KQ7|EHMT2_HUMAN Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3 Back     alignment and function description
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1 PE=1 SV=4 Back     alignment and function description
>sp|Q5DW34|EHMT1_MOUSE Histone-lysine N-methyltransferase EHMT1 OS=Mus musculus GN=Ehmt1 PE=1 SV=2 Back     alignment and function description
>sp|Q294B9|SUV39_DROPS Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila pseudoobscura pseudoobscura GN=Su(var)3-9 PE=3 SV=1 Back     alignment and function description
>sp|Q28CQ7|SUV92_XENTR Histone-lysine N-methyltransferase SUV39H2 OS=Xenopus tropicalis GN=suv39h2 PE=2 SV=2 Back     alignment and function description
>sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
224105119414 SET domain protein [Populus trichocarpa] 0.966 0.777 0.637 1e-123
359488070 1037 PREDICTED: uncharacterized protein LOC10 0.942 0.302 0.654 1e-123
356504119 677 PREDICTED: histone-lysine N-methyltransf 0.963 0.474 0.639 1e-121
147864337 893 hypothetical protein VITISV_003700 [Viti 0.945 0.352 0.649 1e-119
225433249 859 PREDICTED: histone-lysine N-methyltransf 0.945 0.366 0.646 1e-118
296083721 517 unnamed protein product [Vitis vinifera] 0.945 0.609 0.64 1e-118
255561971 620 set domain protein, putative [Ricinus co 0.942 0.506 0.623 1e-117
255560469 562 set domain protein, putative [Ricinus co 0.909 0.539 0.621 1e-115
356574896 749 PREDICTED: histone-lysine N-methyltransf 0.960 0.427 0.618 1e-115
356533657 704 PREDICTED: histone-lysine N-methyltransf 0.960 0.454 0.618 1e-114
>gi|224105119|ref|XP_002313693.1| SET domain protein [Populus trichocarpa] gi|222850101|gb|EEE87648.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 254/331 (76%), Gaps = 9/331 (2%)

Query: 2   PIFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNC 61
           PI+++DI+RGE+  P+ L+NE+ T ELP F+YI  N VY+  HV+FSLARI ++NCC  C
Sbjct: 90  PIYLKDISRGEDNIPVPLVNESSTLELPDFIYIKNNMVYQGGHVDFSLARISEDNCCAQC 149

Query: 62  SGNCLSAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLEN 121
            G+CLS+   CAC +ET G+F YT  G+L E+FL E+IA+      +KH +YCE CPL+N
Sbjct: 150 LGDCLSSDLPCACAAETGGEFVYTQKGMLKEEFLDEAIAV-SLDPQRKHFYYCEICPLQN 208

Query: 122 RLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASE 181
                    +R   +K CKGHL RKFIKECW+KCGC+  CGNRVVQRGI V LQVF A E
Sbjct: 209 E------PQQRYGKIKRCKGHLTRKFIKECWSKCGCNKKCGNRVVQRGIQVALQVFAAPE 262

Query: 182 GKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSG--DRHTYPVLLDADWASERF 239
           GKGWGV+++ AL+KGTF+CEYVGE+VTNQEL ERN E +   +RHTYPVLLDADW SER 
Sbjct: 263 GKGWGVQSVNALKKGTFICEYVGEIVTNQELYERNNERAAKKERHTYPVLLDADWGSERI 322

Query: 240 LKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEE 299
           L+DEEALCLDAT+FGN+ RFINHRCYD+NLIEIPVE+ETPDHHYY  AFFTTR +E  EE
Sbjct: 323 LEDEEALCLDATEFGNIGRFINHRCYDSNLIEIPVEVETPDHHYYRHAFFTTRGIEPMEE 382

Query: 300 LNWDYGIDFSDETHPIKAFDCKCGSFFCSMK 330
           L WDYGI F D+ HPIKAF CKCGS  C  K
Sbjct: 383 LTWDYGIQFDDKHHPIKAFKCKCGSTGCRDK 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488070|ref|XP_002263876.2| PREDICTED: uncharacterized protein LOC100261268 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504119|ref|XP_003520846.1| PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max] Back     alignment and taxonomy information
>gi|147864337|emb|CAN83006.1| hypothetical protein VITISV_003700 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433249|ref|XP_002282057.1| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083721|emb|CBI23710.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561971|ref|XP_002521994.1| set domain protein, putative [Ricinus communis] gi|223538798|gb|EEF40398.1| set domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255560469|ref|XP_002521249.1| set domain protein, putative [Ricinus communis] gi|223539517|gb|EEF41105.1| set domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356574896|ref|XP_003555579.1| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Glycine max] Back     alignment and taxonomy information
>gi|356533657|ref|XP_003535377.1| PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
TAIR|locus:2100885492 SUVR4 [Arabidopsis thaliana (t 0.942 0.638 0.563 4.5e-98
TAIR|locus:2024229734 SUVR1 "homolog of SU(var)3-9 1 0.951 0.431 0.503 1.3e-82
TAIR|locus:2172502740 SUVR2 [Arabidopsis thaliana (t 0.942 0.424 0.493 6e-80
UNIPROTKB|F1NWQ7856 EHMT1 "Uncharacterized protein 0.441 0.171 0.429 1.7e-31
MGI|MGI:1099440412 Suv39h1 "suppressor of variega 0.447 0.361 0.408 1.8e-31
RGD|1565028413 Suv39h1 "suppressor of variega 0.447 0.360 0.408 1.8e-31
UNIPROTKB|F1LNT2451 Suv39h1 "Protein Suv39h1" [Rat 0.447 0.330 0.408 1.8e-31
UNIPROTKB|A2BED6888 EHMT2 "Histone-lysine N-methyl 0.600 0.225 0.366 1.9e-31
UNIPROTKB|Q9H9B11298 EHMT1 "Histone-lysine N-methyl 0.441 0.113 0.435 2.1e-31
UNIPROTKB|E1BXB6905 EHMT1 "Uncharacterized protein 0.441 0.162 0.429 2.1e-31
TAIR|locus:2100885 SUVR4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 182/323 (56%), Positives = 229/323 (70%)

Query:     5 VEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDEXXXXXXXXX 64
             + DIT+G E   I L+++ G+  +PKF YI  N VY++A+++ SLARI DE         
Sbjct:   144 IADITKGSESVKIPLVDDVGSEAVPKFTYIPHNIVYQSAYLHVSLARISDEDCCANCKGN 203

Query:    65 XXXAPANCACTSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLV 124
                A   C C  ET G++AYT  GLL EKFL ++   ++++ D     YC++CPLE    
Sbjct:   204 CLSADFPCTCARETSGEYAYTKEGLLKEKFL-DTCLKMKKEPDSFPKVYCKDCPLE---- 258

Query:   125 NGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKG 184
                R+H  K +   C GHL+RKFIKECW KCGC + CGNRVVQRGI  +LQV+   EGKG
Sbjct:   259 ---RDHD-KGTYGKCDGHLIRKFIKECWRKCGCDMQCGNRVVQRGIRCQLQVYFTQEGKG 314

Query:   185 WGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEE 244
             WG+RTL+ L KGTF+CEY+GE++TN EL +RN   S +RHTYPV LDADW SE+ LKDEE
Sbjct:   315 WGLRTLQDLPKGTFICEYIGEILTNTELYDRNVRSSSERHTYPVTLDADWGSEKDLKDEE 374

Query:   245 ALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDY 304
             ALCLDAT  GNVARFINHRC DAN+I+IP+EIETPD HYYH+AFFT R V+  +EL WDY
Sbjct:   375 ALCLDATICGNVARFINHRCEDANMIDIPIEIETPDRHYYHIAFFTLRDVKAMDELTWDY 434

Query:   305 GIDFSDETHPIKAFDCKCGSFFC 327
              IDF+D++HP+KAF C CGS  C
Sbjct:   435 MIDFNDKSHPVKAFRCCCGSESC 457
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA;IDA
GO:0034968 "histone lysine methylation" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2024229 SUVR1 "homolog of SU(var)3-9 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172502 SUVR2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWQ7 EHMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1099440 Suv39h1 "suppressor of variegation 3-9 homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1565028 Suv39h1 "suppressor of variegation 3-9 homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNT2 Suv39h1 "Protein Suv39h1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A2BED6 EHMT2 "Histone-lysine N-methyltransferase EHMT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9B1 EHMT1 "Histone-lysine N-methyltransferase EHMT1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXB6 EHMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W595SUVR4_ARATH2, ., 1, ., 1, ., 4, 30.59130.94290.6382yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.824
3rd Layer2.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SDG926
SET domain protein (414 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-29
pfam00856113 pfam00856, SET, SET domain 9e-23
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 7e-14
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 9e-07
smart0046898 smart00468, PreSET, N-terminal to some SET domains 3e-06
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  109 bits (274), Expect = 1e-29
 Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 16/140 (11%)

Query: 172 VKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLD 231
            KL+VF+ S GKGWGVR  E + KG F+ EYVGE++T++E +ER + +  D      L D
Sbjct: 1   NKLEVFK-SPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFD 59

Query: 232 ADWASERFLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTT 291
            D            LC+DA + GN+ARFINH C + N   + VE+   D     +  F  
Sbjct: 60  IDS----------DLCIDARRKGNLARFINHSC-EPNCELLFVEVNGDD----RIVIFAL 104

Query: 292 RKVEVNEELNWDYGIDFSDE 311
           R ++  EEL  DYG D+++E
Sbjct: 105 RDIKPGEELTIDYGSDYANE 124

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information
>gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.96
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.96
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.92
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.88
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.84
KOG1085392 consensus Predicted methyltransferase (contains a 99.82
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 99.76
COG2940480 Proteins containing SET domain [General function p 99.68
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.53
KOG1081463 consensus Transcription factor NSD1 and related SE 99.04
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.95
KOG11411262 consensus Predicted histone methyl transferase [Ch 98.94
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.49
smart0057051 AWS associated with SET domains. subdomain of PRES 97.01
smart0050826 PostSET Cysteine-rich motif following a subset of 96.5
KOG2084 482 consensus Predicted histone tail methylase contain 90.23
KOG1337 472 consensus N-methyltransferase [General function pr 83.53
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-49  Score=381.39  Aligned_cols=272  Identities=35%  Similarity=0.608  Sum_probs=212.4

Q ss_pred             ccccccCCCCCCCCeEEEcCCCCCCCCCcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCC-CccCcCCCCCC
Q 044651            3 IFVEDITRGEEKQPISLLNENGTSELPKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPA-NCACTSETRGD   81 (333)
Q Consensus         3 ~~~~Dis~g~e~~pi~~~N~vd~~~~p~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~-~C~C~~~~~~~   81 (333)
                      ....||+.|.|++||+++|+||++.++.|+|++..++.++ ...    .......| .|...|..... .|.|.+.++..
T Consensus        60 ~~~~d~~~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~-~~~----~~~~~~~c-~C~~~~~~~~~~~C~C~~~n~~~  133 (364)
T KOG1082|consen   60 SELEDIALGSENLPVPLVNRIDEDAPLYFQYIATEIVDPG-ELS----DCENSTGC-RCCSSCSSVLPLTCLCERHNGGL  133 (364)
T ss_pred             cccccccCccccCceeeeeeccCCccccceeccccccCcc-ccc----cCccccCC-CccCCCCCCCCccccChHhhCCc
Confidence            4678999999999999999999877799999999987764 111    11122235 77776654322 39999999888


Q ss_pred             eeecCCCccchHHHHHHHHHHHhcCCccccccccCCCcccccccCCcccccccCCCCCcCccccceeeccCccCCCCCCC
Q 044651           82 FAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNC  161 (333)
Q Consensus        82 ~~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C  161 (333)
                      ++|+.++...                                                ..+..+..+|||+..|+|++.|
T Consensus       134 ~~~~~~~~~~------------------------------------------------~~~~~~~~i~EC~~~C~C~~~C  165 (364)
T KOG1082|consen  134 VAYTCDGDCG------------------------------------------------TLGKFKEPVFECSVACGCHPDC  165 (364)
T ss_pred             cccccCCccc------------------------------------------------cccccCccccccccCCCCCCcC
Confidence            8887776421                                                0111246899999999999999


Q ss_pred             CCcccccCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhcCC----CcceeEEeccccccc
Q 044651          162 GNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGD----RHTYPVLLDADWASE  237 (333)
Q Consensus       162 ~Nr~~q~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~~~----~~~y~~~l~~~~~~~  237 (333)
                      .||++|+|.+.+|+||+|.+ +|||||+++.|++|+||+||+||+++.++++.+...+...    ...+.+  +.+|...
T Consensus       166 ~nRv~q~g~~~~leIfrt~~-kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  242 (364)
T KOG1082|consen  166 ANRVVQKGLQFHLEVFRTPE-KGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIA--DREWVDE  242 (364)
T ss_pred             cchhhccccccceEEEecCC-ceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhh--hcccccc
Confidence            99999999999999999986 9999999999999999999999999999998775433111    111111  2222221


Q ss_pred             c-----------ccccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCC
Q 044651          238 R-----------FLKDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGI  306 (333)
Q Consensus       238 ~-----------~~~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~  306 (333)
                      .           .......+.|||...||++|||||||. ||+.++.|+.++.++..++++|||+++|.||||||||||.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~-PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~  321 (364)
T KOG1082|consen  243 SPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCS-PNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK  321 (364)
T ss_pred             ccccccccccccccCCCcceEEchhhcccccccccCCCC-ccceeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence            1           122346799999999999999999995 9999999999988899999999999999999999999998


Q ss_pred             CCC----CCC---CCCCCeeeeeCCCCCccccC
Q 044651          307 DFS----DET---HPIKAFDCKCGSFFCSMKSQ  332 (333)
Q Consensus       307 ~~~----~~~---~~~~~~~C~Cgs~~Crg~~~  332 (333)
                      .+.    ...   .+.....|.||+.+||+++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~  354 (364)
T KOG1082|consen  322 AYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLG  354 (364)
T ss_pred             cccccccccccccccccchhhcCCCHHhCcccC
Confidence            754    111   12346789999999999874

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 9e-33
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-32
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 3e-32
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 3e-32
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 5e-32
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 3e-31
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 8e-30
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 1e-24
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 3e-22
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 2e-21
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 2e-16
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 2e-15
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 6e-09
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 2e-08
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 6e-05
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 7e-05
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 8e-05
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 9e-05
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 2e-04
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (345), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 116/200 (58%), Gaps = 25/200 (12%)
Query: 141 GHLMRKF-------IKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEAL 193
           G L+++F       I EC   C C  NC NRVVQ GI V+LQ+++ ++  GWGVR L+ +
Sbjct: 88  GRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAK-MGWGVRALQTI 146
Query: 194 EKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFLKDEEALCLDATKF 253
            +GTF+CEYVGE++++ E D R ++      +Y   LD         KD E  C+DA  +
Sbjct: 147 PQGTFICEYVGELISDAEADVREDD------SYLFDLDN--------KDGEVYCIDARYY 192
Query: 254 GNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETH 313
           GN++RFINH C D N+I + V +   D  +  +AFF++R +   EEL +DYG  F D   
Sbjct: 193 GNISRFINHLC-DPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKS 251
Query: 314 PIKAFDCKCGSFFCSMKSQS 333
             K F C+CGS  C   +++
Sbjct: 252 --KYFTCQCGSEKCKHSAEA 269
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 8e-76
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 7e-75
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 5e-71
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 9e-70
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 4e-65
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 6e-61
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 6e-54
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 5e-44
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 2e-38
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 3e-31
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 2e-20
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 3e-20
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 2e-18
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 2e-16
3db5_A151 PR domain zinc finger protein 4; methyltransferase 1e-13
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 7e-13
3dal_A196 PR domain zinc finger protein 1; methyltransferase 3e-11
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 3e-11
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 4e-10
3ray_A237 PR domain-containing protein 11; structural genomi 5e-07
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
 Score =  234 bits (598), Expect = 8e-76
 Identities = 87/338 (25%), Positives = 127/338 (37%), Gaps = 77/338 (22%)

Query: 6   EDITRGEEKQPISLLNENGTSELPK--FLYISKNTVYKNAHVNFSLARIGDENC-CLNCS 62
               R  E   ++L+NE      P   F +IS+  + +         + G   C C +  
Sbjct: 19  RKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSG---CNCSSLG 75

Query: 63  GNCLSAPANCACTSETR--GDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLE 120
           G  L+ P+ C C  +      FAY A G +                              
Sbjct: 76  GCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADT-------------------------- 109

Query: 121 NRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQAS 180
                                      I EC + C CS+ C NRVVQRG T+ L++F+ +
Sbjct: 110 ------------------------GAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFK-T 144

Query: 181 EGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFL 240
           + KGWGVR+L     GTF+  Y+GEV+T+ E  +R++ +  D  TY   LD         
Sbjct: 145 KEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFD------ 198

Query: 241 KDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEEL 300
            D     +DA  +G+V+RF NH C   N+              Y +AFF  + ++  EEL
Sbjct: 199 -DASEYTVDAQNYGDVSRFFNHSC-SPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEEL 256

Query: 301 NWDYGIDFS----------DETHPIKAFDCKCGSFFCS 328
            +DY                         CKCGS  C 
Sbjct: 257 TFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCR 294
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 100.0
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.96
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.95
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.95
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.95
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.93
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.91
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.85
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.84
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.8
3ray_A237 PR domain-containing protein 11; structural genomi 99.68
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.62
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.69
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.68
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.61
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 96.69
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.24
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 95.81
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 80.42
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-64  Score=471.89  Aligned_cols=258  Identities=39%  Similarity=0.721  Sum_probs=217.0

Q ss_pred             CccccccCCCCCCCCeEEEcCCCCCCCC-CcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCCCccCcCCCCC
Q 044651            2 PIFVEDITRGEEKQPISLLNENGTSELP-KFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRG   80 (333)
Q Consensus         2 ~~~~~Dis~g~e~~pi~~~N~vd~~~~p-~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~~C~C~~~~~~   80 (333)
                      .|+..|||+|+|++||+|+|+||++++| .|+|++++++.+...+...   +.....| +|.++|.+  ..|.|.+++ .
T Consensus        29 ~~~~~Dis~G~E~~pi~~~N~vD~~~~p~~f~Y~~~~~~~~~~~~~~~---~~~~~gC-~C~~~C~~--~~C~C~~~~-~  101 (287)
T 3hna_A           29 RIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRN---ITHLQYC-VCIDDCSS--SNCMCGQLS-M  101 (287)
T ss_dssp             EEEESCTTTTCSSSCCCEEESSSSCCCCCSSEECSSCEESSCCCCCCB---GGGCCCC-CCSSSSCS--TTCHHHHHT-S
T ss_pred             CEEhHhhCCCCCCCCEEEEeCCCCCCCCCCcEEccccccCCCcccccc---CCCCCCC-cCcCCCCC--CCCcCcccC-c
Confidence            3678999999999999999999998755 9999999987654332221   2222346 99999975  489999887 4


Q ss_pred             CeeecCCCccchHHHHHHHHHHHhcCCccccccccCCCcccccccCCcccccccCCCCCcCccccceeeccCccCCCCCC
Q 044651           81 DFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLN  160 (333)
Q Consensus        81 ~~~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~  160 (333)
                      .++|+++|+|...|..                                              ..+.+||||++.|+|+..
T Consensus       102 ~~~y~~~g~l~~~~~~----------------------------------------------~~~~~i~EC~~~C~C~~~  135 (287)
T 3hna_A          102 RCWYDKDGRLLPEFNM----------------------------------------------AEPPLIFECNHACSCWRN  135 (287)
T ss_dssp             SCCBCTTSCBCTTCCS----------------------------------------------SSCCCEECCCTTSSSCTT
T ss_pred             ccccCCCCcccccccc----------------------------------------------cCCceEEecCCCCCCCCC
Confidence            5889999998643210                                              023589999999999999


Q ss_pred             CCCcccccCCccceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhhcCCCcceeEEecccccccccc
Q 044651          161 CGNRVVQRGITVKLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEFSGDRHTYPVLLDADWASERFL  240 (333)
Q Consensus       161 C~Nr~~q~g~~~~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~~~~~~~y~~~l~~~~~~~~~~  240 (333)
                      |+||++|+|.+.+|+||++. ++||||||+++|++|+||+||+|||++.++++.|      ....|+|.++...      
T Consensus       136 C~Nr~~q~g~~~~l~v~~t~-~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r------~~~~Y~f~l~~~~------  202 (287)
T 3hna_A          136 CRNRVVQNGLRARLQLYRTR-DMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR------EEDSYLFDLDNKD------  202 (287)
T ss_dssp             CSSCSGGGCCCSCEEEEECS-SSSEEEEESSCBCTTCEEEEECEEEEEHHHHHTC------SCCTTEEESCCSS------
T ss_pred             CCCcccCcCCcccEEEEEcC-CCceEEEeCcccCCCCEEEEeeeEEccHHHHhhh------cccceEEEeccCC------
Confidence            99999999999999999995 7999999999999999999999999999998765      3468888887542      


Q ss_pred             ccCcceEeeccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCCCCCCCCCCCeee
Q 044651          241 KDEEALCLDATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDETHPIKAFDC  320 (333)
Q Consensus       241 ~~~~~~~IDa~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~~~~~~~~~~~~C  320 (333)
                        ...++|||+.+||++|||||||. ||+.++.|++.+.+...++|+|||+|||++||||||||+..+|...  .+.+.|
T Consensus       203 --~~~~~IDa~~~GN~aRFiNHSC~-PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~~--~~~~~C  277 (287)
T 3hna_A          203 --GEVYCIDARFYGNVSRFINHHCE-PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIK--GKLFSC  277 (287)
T ss_dssp             --SSCEEEEEEEEECGGGGCEECSS-CSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHHH--TTTCCC
T ss_pred             --CceEEEeccccCCchheeeecCC-CCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcccccC--CCcCEe
Confidence              23589999999999999999995 9999999998888888999999999999999999999998877543  236899


Q ss_pred             eeCCCCCccc
Q 044651          321 KCGSFFCSMK  330 (333)
Q Consensus       321 ~Cgs~~Crg~  330 (333)
                      +|||++|||.
T Consensus       278 ~CGs~~CRgs  287 (287)
T 3hna_A          278 RCGSPKCRHS  287 (287)
T ss_dssp             CCCCTTCSCC
T ss_pred             eCCCCCCCCC
Confidence            9999999984
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 333
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 7e-49
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 4e-38
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 2e-20
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 2e-13
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score =  163 bits (412), Expect = 7e-49
 Identities = 80/319 (25%), Positives = 130/319 (40%), Gaps = 49/319 (15%)

Query: 16  PISLLNENGTSELPK-FLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCAC 74
           PIS++N    + L   F +I  + + KN  V     R+G   C  +C+ +     + C C
Sbjct: 3   PISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVG---C--SCASDEECMYSTCQC 57

Query: 75  TSETRGDFAYTAAGLLDEKFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKR 134
             E   D                                 E  P   +      +   K+
Sbjct: 58  LDEMAPDSDE------------------------------EADPYTRKKRFAYYSQGAKK 87

Query: 135 SVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITVKLQVFQASEGKGWGVRTLEALE 194
            +   +    ++ I EC   C CS +C NRVV+RG TV LQ+F+ ++ +GWGV+    ++
Sbjct: 88  GLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFR-TKDRGWGVKCPVNIK 146

Query: 195 KGTFVCEYVGEVVTNQELDERNEEFS----GDRHTYPVLLDADWASERFLKDEEALCLDA 250
           +G FV  Y+GE++T++E D R  E +     D + + +   +D  S   L   + L +D 
Sbjct: 147 RGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDG 206

Query: 251 TKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYG----- 305
                  RFINH C D N+       +  D H + +A F  + +    EL +DY      
Sbjct: 207 EYMSGPTRFINHSC-DPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTG 265

Query: 306 --IDFSDETHPIKAFDCKC 322
              D  D +   +   C C
Sbjct: 266 LESDAHDPSKISEMTKCLC 284
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.95
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.91
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.77
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=100.00  E-value=3e-56  Score=413.71  Aligned_cols=272  Identities=28%  Similarity=0.498  Sum_probs=184.1

Q ss_pred             CCCeEEEcCCCCCCC-CCcEEeeeceecCCccccccccccCCCCcCcCCCCCCCCCCCCccCcCCCCCCeeecCCCccch
Q 044651           14 KQPISLLNENGTSEL-PKFLYISKNTVYKNAHVNFSLARIGDENCCLNCSGNCLSAPANCACTSETRGDFAYTAAGLLDE   92 (333)
Q Consensus        14 ~~pi~~~N~vd~~~~-p~f~Y~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~C~~~~~~C~C~~~~~~~~~y~~~g~~~~   92 (333)
                      ++||+++|+||++.| |+|+|++++++.++..+.    .......| +|.++|...+.+|+|.+...........+... 
T Consensus         1 ~~pi~~~N~vd~~~~p~~f~Yi~~~~~~~~~~~~----~~~~~~gC-~C~~~~~c~~~~C~C~~~~~~~~~~~~~~~~~-   74 (284)
T d1ml9a_           1 QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVA----DQSFRVGC-SCASDEECMYSTCQCLDEMAPDSDEEADPYTR-   74 (284)
T ss_dssp             CCCEEEECSSSSCCCCTTCEECSSCEECTTCCCC----CGGGCCCC-CCSSTTGGGSTTSGGGTTSCCC-----------
T ss_pred             CCCEEEEeCCCCCCCCCCCEECccEEeCCCCccC----CccCCCCC-CCcCCCCcCCCCCcChhhcCcccccccccccc-
Confidence            489999999999865 489999999987654432    11112235 88776543456899988765433211111100 


Q ss_pred             HHHHHHHHHHHhcCCccccccccCCCcccccccCCcccccccCCCCCcCccccceeeccCccCCCCCCCCCcccccCCcc
Q 044651           93 KFLRESIAIIRRKNDKKHLFYCENCPLENRLVNGNRNHKRKRSVKPCKGHLMRKFIKECWAKCGCSLNCGNRVVQRGITV  172 (333)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~c~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~  172 (333)
                               .+++     ..++...  ...+.           .  -.......+||||++.|+|+..|.||++|+|.+.
T Consensus        75 ---------~~~~-----~~~~~~~--~~~~~-----------~--~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~  125 (284)
T d1ml9a_          75 ---------KKRF-----AYYSQGA--KKGLL-----------R--DRVLQSQEPIYECHQGCACSKDCPNRVVERGRTV  125 (284)
T ss_dssp             ----------CCS-----SBBCSST--TBTSB-----------C--HHHHHHCCCEECCCTTCSSCTTCTTCHHHHCCCS
T ss_pred             ---------cccc-----ccccccc--ccccc-----------c--cccccCCCceeCCCCCCCcCCCCCCeeccCCCcc
Confidence                     0000     0000000  00000           0  0000123568999999999999999999999999


Q ss_pred             ceEEEEcCCCcceeEEeCccccCCcEEEEEeceeccHHHHHHHHhhh--cCCCcceeEEeccccccc--cccccCcceEe
Q 044651          173 KLQVFQASEGKGWGVRTLEALEKGTFVCEYVGEVVTNQELDERNEEF--SGDRHTYPVLLDADWASE--RFLKDEEALCL  248 (333)
Q Consensus       173 ~l~v~~t~~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r~~~~--~~~~~~y~~~l~~~~~~~--~~~~~~~~~~I  248 (333)
                      +|+||+|. .+||||||+++|++|+||+||+||+|+.++++++...+  ......|++.++......  ........++|
T Consensus       126 ~lev~kt~-~kG~Gv~a~~~I~kGt~I~eY~Gevi~~~ea~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~i  204 (284)
T d1ml9a_         126 PLQIFRTK-DRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEV  204 (284)
T ss_dssp             CEEEEECS-SSCEEEECSSCBCTTCEEEECCCEEECHHHHHHHHHHSCGGGCHHHHEEECCSSCCSSSSCHHHHSCCCEE
T ss_pred             CEEEEEcC-CCceEEeeCCCcCCCCEEEEecCcccCHHHHHHHHHHHHhhccCCccceecccccccccccccccCCceeE
Confidence            99999985 69999999999999999999999999999998877655  344556888776542211  11223456899


Q ss_pred             eccccCCcceeeccccCCCceeEEeEEecCCCCceeEEEEEecCCCCCCCeEEEecCCCCCCCC-------CCCCCeeee
Q 044651          249 DATKFGNVARFINHRCYDANLIEIPVEIETPDHHYYHVAFFTTRKVEVNEELNWDYGIDFSDET-------HPIKAFDCK  321 (333)
Q Consensus       249 Da~~~GN~aRFiNHSC~~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~dYg~~~~~~~-------~~~~~~~C~  321 (333)
                      ||+.+||+||||||||. ||+.++.|++++.+++.++|+|||+|||+|||||||||+..+|...       .....++|+
T Consensus       205 Da~~~GN~aRfiNHSC~-PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~  283 (284)
T d1ml9a_         205 DGEYMSGPTRFINHSCD-PNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCL  283 (284)
T ss_dssp             ECSSEECGGGGCEECSS-CSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC----------------------
T ss_pred             eeeeccchhheeecccc-CCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCCchhhcchhhcccCCceee
Confidence            99999999999999995 9999999999988889999999999999999999999998876532       112356788


Q ss_pred             e
Q 044651          322 C  322 (333)
Q Consensus       322 C  322 (333)
                      |
T Consensus       284 C  284 (284)
T d1ml9a_         284 C  284 (284)
T ss_dssp             -
T ss_pred             C
Confidence            8
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure