Citrus Sinensis ID: 044681

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
MEEKKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVAKAEWDAEKAEASTFV
cccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHcccEEEEEcccccHHHHccccccccEEEcccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHcccccccHHccccHHHHHHHcccc
ccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccEEEEEEcHHHcHHHHccccccEEEEEccHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHcccccccccccEEEHHHccccccc
MEEKKEAKSRFKRVCvfcgsspdykyCYRKAAIDLGNELVSKGLDlvygggnvglmGLISEEVHRGRRHVLGIIPRALMkkeltgvtlgevkpvdhmHQRKAEMARYADCfivlpggfgtlEKLFEVTtwsqlgvhnkpVAIIMVSASNAKELVQKLEdyepshdgvVAKAEWDAEKAEASTFV
meekkeaksrfkrvcvfcgsspdyKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGiipralmkkeltgvtlgevkpvdHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVAKAEWDAEkaeastfv
MEEKKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVakaewdaekaeaSTFV
**********FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELV******************************
*************VCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVAKAEWDAEKAEASTFV
**********FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVAKAEWD**********
*********RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVAKAEWDAEKAEAST**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEKKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVAKAEWDAEKAEASTFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query184 2.2.26 [Sep-21-2011]
Q8GW29217 Cytokinin riboside 5'-mon yes no 0.923 0.783 0.567 2e-59
Q8LBB7228 Cytokinin riboside 5'-mon no no 0.923 0.745 0.567 4e-59
Q8L8B8215 Cytokinin riboside 5'-mon no no 0.961 0.823 0.538 4e-58
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.951 0.813 0.524 1e-57
Q8RUN2213 Cytokinin riboside 5'-mon no no 0.934 0.807 0.537 1e-57
B9F166244 Probable cytokinin ribosi yes no 0.923 0.696 0.522 7e-56
Q0JBP5250 Probable cytokinin ribosi yes no 0.923 0.68 0.522 2e-55
Q8H7U8211 Probable cytokinin ribosi no no 0.913 0.796 0.522 6e-55
Q5BPS0213 Cytokinin riboside 5'-mon no no 0.923 0.798 0.527 7e-55
Q7XDB8204 Probable cytokinin ribosi no no 0.907 0.818 0.525 2e-54
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function desciption
 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 138/199 (69%), Gaps = 29/199 (14%)

Query: 5   KEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVH 64
           +E KSRFKR+CVFCGSS   K  Y++AAI LGNELV + +DLVYGGG+VGLMGL+S+ VH
Sbjct: 2   EETKSRFKRICVFCGSSSGKKPSYQEAAIQLGNELVERRIDLVYGGGSVGLMGLVSQAVH 61

Query: 65  RGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKL 124
            G RHVLG+IP+ LM +E+TG T+GEVK V  MHQRKAEMAR AD FI LPGG+GTLE+L
Sbjct: 62  HGGRHVLGVIPKTLMPREITGETIGEVKAVADMHQRKAEMARQADAFIALPGGYGTLEEL 121

Query: 125 FEVTTWSQLGVHNKPVAI-----------------------------IMVSASNAKELVQ 155
            EV TW+QLG+H KPV +                             I+VSA NAKELV+
Sbjct: 122 LEVITWAQLGIHRKPVGLLNVDGYYNSLLTFIDKAVDEGFISPMARRIIVSAPNAKELVR 181

Query: 156 KLEDYEPSHDGVVAKAEWD 174
           +LE+YEP  D + +K  WD
Sbjct: 182 QLEEYEPEFDEITSKLVWD 200
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|Q8LBB7|LOG5_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 OS=Arabidopsis thaliana GN=LOG5 PE=1 SV=1 Back     alignment and function description
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function description
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function description
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1 Back     alignment and function description
>sp|Q5BPS0|LOG2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
255539156219 carboxy-lyase, putative [Ricinus communi 0.972 0.817 0.615 9e-67
359492329268 PREDICTED: cytokinin riboside 5'-monopho 0.972 0.667 0.605 1e-65
449454388221 PREDICTED: cytokinin riboside 5'-monopho 0.907 0.755 0.622 7e-65
147797810214 hypothetical protein VITISV_000977 [Viti 0.934 0.803 0.621 9e-65
302141674214 unnamed protein product [Vitis vinifera] 0.934 0.803 0.616 1e-64
224083235221 predicted protein [Populus trichocarpa] 0.972 0.809 0.6 6e-64
449521776218 PREDICTED: cytokinin riboside 5'-monopho 0.934 0.788 0.597 2e-63
449453077226 PREDICTED: cytokinin riboside 5'-monopho 0.934 0.761 0.597 4e-63
225428197229 PREDICTED: cytokinin riboside 5'-monopho 0.945 0.759 0.596 6e-63
224078472206 predicted protein [Populus trichocarpa] 0.961 0.859 0.592 4e-62
>gi|255539156|ref|XP_002510643.1| carboxy-lyase, putative [Ricinus communis] gi|223551344|gb|EEF52830.1| carboxy-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  258 bits (658), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 152/208 (73%), Gaps = 29/208 (13%)

Query: 1   MEEKKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLIS 60
           MEE + AKSRF RVCVFCGSS   K CYR AA++LG ELVS+ L LVYGGG+VGLMGL+S
Sbjct: 1   MEETRAAKSRFNRVCVFCGSSTGKKDCYRDAALELGQELVSRRLGLVYGGGSVGLMGLVS 60

Query: 61  EEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGT 120
           +EVHRG  HVLGIIP+ LM KE+TG T+GEV+PV  MHQRKAEMAR++DCFI LPGG+GT
Sbjct: 61  QEVHRGGGHVLGIIPKTLMNKEITGETIGEVRPVADMHQRKAEMARHSDCFIALPGGYGT 120

Query: 121 LEKLFEVTTWSQLGVHNKPVAI-----------------------------IMVSASNAK 151
           LE+L EV TW+QLG+H+KPV +                             I+VSA NAK
Sbjct: 121 LEELLEVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVSAPNAK 180

Query: 152 ELVQKLEDYEPSHDGVVAKAEWDAEKAE 179
           ELVQKLE+Y P HDGVVAK +W+AE+ E
Sbjct: 181 ELVQKLEEYVPLHDGVVAKIKWEAEQVE 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492329|ref|XP_002285924.2| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454388|ref|XP_004144937.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Cucumis sativus] gi|449475078|ref|XP_004154367.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Cucumis sativus] gi|449500215|ref|XP_004161037.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147797810|emb|CAN74076.1| hypothetical protein VITISV_000977 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302141674|emb|CBI18877.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224083235|ref|XP_002306969.1| predicted protein [Populus trichocarpa] gi|222856418|gb|EEE93965.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449521776|ref|XP_004167905.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453077|ref|XP_004144285.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225428197|ref|XP_002281839.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 [Vitis vinifera] gi|297744519|emb|CBI37781.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078472|ref|XP_002305546.1| predicted protein [Populus trichocarpa] gi|222848510|gb|EEE86057.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query184
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.766 0.649 0.673 4.8e-56
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.788 0.674 0.625 2.9e-54
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.760 0.657 0.635 4.8e-54
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.75 0.605 0.652 4.8e-54
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.760 0.578 0.607 1.6e-51
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.766 0.661 0.624 5.4e-51
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.782 0.716 0.618 2.3e-50
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.777 0.662 0.565 2.8e-41
TIGR_CMR|GSU_2766196 GSU_2766 "decarboxylase family 0.717 0.673 0.507 2.9e-32
TIGR_CMR|BA_5294192 BA_5294 "decarboxylase family 0.728 0.697 0.462 1.1e-31
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 513 (185.6 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
 Identities = 95/141 (67%), Positives = 115/141 (81%)

Query:     5 KEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVH 64
             +E KSRFKR+CVFCGSS   K  Y++AAI LGNELV + +DLVYGGG+VGLMGL+S+ VH
Sbjct:     2 EETKSRFKRICVFCGSSSGKKPSYQEAAIQLGNELVERRIDLVYGGGSVGLMGLVSQAVH 61

Query:    65 RGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKL 124
              G RHVLG+IP+ LM +E+TG T+GEVK V  MHQRKAEMAR AD FI LPGG+GTLE+L
Sbjct:    62 HGGRHVLGVIPKTLMPREITGETIGEVKAVADMHQRKAEMARQADAFIALPGGYGTLEEL 121

Query:   125 FEVTTWSQLGVHNKPVAIIMV 145
              EV TW+QLG+H KPV ++ V
Sbjct:   122 LEVITWAQLGIHRKPVGLLNV 142
GO:0008152 "metabolic process" evidence=ISS
GO:0016831 "carboxy-lyase activity" evidence=ISS
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006826 "iron ion transport" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5294 BA_5294 "decarboxylase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GW29LOG7_ARATH3, ., 2, ., 2, ., n, 10.56780.92390.7834yesno
P48636Y4923_PSEAENo assigned EC number0.50730.73910.6974yesno
Q0JBP5LOGL6_ORYSJ3, ., 2, ., 2, ., n, 10.52260.92390.68yesno
B9F166LOGL2_ORYSJ3, ., 2, ., 2, ., n, 10.52260.92390.6967yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.946
3rd Layer3.2.20.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_V1618
hypothetical protein (221 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 8e-40
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 4e-36
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 2e-34
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 8e-04
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information 
 Score =  133 bits (335), Expect = 8e-40
 Identities = 67/134 (50%), Positives = 85/134 (63%), Gaps = 2/134 (1%)

Query: 12  KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVL 71
           K VCV+CGSSP     Y++ A +LG  L  +G  LVYGGG VGLMG I++         +
Sbjct: 1   KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAV 60

Query: 72  GIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWS 131
           G+ P  L   E+    L E+  V+ MH+RKA MA  AD FI +PGGFGTLE+LFEV TW+
Sbjct: 61  GVNPSGLFSGEVVHQNLTELIEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWA 120

Query: 132 QLGVHNKPVAIIMV 145
           QLG+H KP  II+ 
Sbjct: 121 QLGIHQKP--IILF 132

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by This model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions [Hypothetical proteins, Conserved]. Length = 178
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 184
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 100.0
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 99.97
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 99.57
PF02481212 DNA_processg_A: DNA recombination-mediator protein 99.11
PRK10736374 hypothetical protein; Provisional 98.96
COG0758350 Smf Predicted Rossmann fold nucleotide-binding pro 98.67
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 96.02
PF06908177 DUF1273: Protein of unknown function (DUF1273); In 94.98
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 94.63
PRK10565 508 putative carbohydrate kinase; Provisional 92.6
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 91.78
PLN02605382 monogalactosyldiacylglycerol synthase 91.77
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 91.58
PRK13608391 diacylglycerol glucosyltransferase; Provisional 91.07
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 90.78
PF1068671 DUF2493: Protein of unknown function (DUF2493); In 90.73
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 89.99
PRK13660182 hypothetical protein; Provisional 89.69
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 89.07
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 87.31
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 87.23
COG1597 301 LCB5 Sphingosine kinase and enzymes related to euk 86.99
PRK13609380 diacylglycerol glucosyltransferase; Provisional 86.68
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 86.17
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 85.67
PRK11914 306 diacylglycerol kinase; Reviewed 81.74
cd00587258 HCP_like The HCP family of iron-sulfur proteins in 81.67
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 80.77
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 80.59
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 80.28
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information 
Probab=100.00  E-value=5.8e-47  Score=308.17  Aligned_cols=149  Identities=46%  Similarity=0.862  Sum_probs=140.1

Q ss_pred             ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceE
Q 044681           12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEV   91 (184)
Q Consensus        12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~   91 (184)
                      |+|||||||+.++++.|++.|++||++||++|+.||||||..|+|+++++||+++||+|+||+|..+...+.++++++++
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~   80 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL   80 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence            58999999999999999999999999999999999999994499999999999999999999999887778788888889


Q ss_pred             eecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------------------------
Q 044681           92 KPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------------------------  142 (184)
Q Consensus        92 ~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------------------------  142 (184)
                      +++++|++||.+|++.||+||+||||+|||+|++++|+|.|+|+|+||+++                             
T Consensus        81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~  160 (178)
T TIGR00730        81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK  160 (178)
T ss_pred             EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence            999999999999999999999999999999999999999999999999999                             


Q ss_pred             EEEecCCHHHHHHHhhhh
Q 044681          143 IMVSASNAKELVQKLEDY  160 (184)
Q Consensus       143 ~i~~~~~~~e~~~~l~~~  160 (184)
                      .+.+++|++|++++|++|
T Consensus       161 ~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       161 LIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             cEEEcCCHHHHHHHHHhC
Confidence            677888888888888764

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion] Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61 Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>PRK13660 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only] Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>PRK11914 diacylglycerol kinase; Reviewed Back     alignment and domain information
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 7e-48
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 3e-31
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 5e-27
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 2e-26
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 7e-14
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (471), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 130/189 (68%), Gaps = 29/189 (15%)
Query: 8   KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGR 67
           KS+F+R+CVFCGSS   K  Y+ AA+DLGNELVS+ +DLVYGGG++GL GL+S+ VH G 
Sbjct: 10  KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDGG 69
Query: 68  RHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEV 127
           RHV+GIIP+ L  +ELTG T+GEV+ V   HQRKAE A+++D FI LPGG+GTLE+L EV
Sbjct: 70  RHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEV 129
Query: 128 TTWSQLGVHNKPVAI-----------------------------IMVSASNAKELVQKLE 158
            TW+QLG+H+KPV +                             I+VSA  AKELV+KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
Query: 159 DYEPSHDGV 167
           +Y P H+ V
Sbjct: 190 EYAPCHERV 198
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query184
1ydh_A216 AT5G11950; structural genomics, protein structure 1e-77
2a33_A215 Hypothetical protein; structural genomics, protein 2e-77
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 8e-71
3qua_A199 Putative uncharacterized protein; structural genom 4e-69
3sbx_A189 Putative uncharacterized protein; structural genom 6e-68
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 5e-45
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 6e-42
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 3e-40
1rcu_A195 Conserved hypothetical protein VT76; structural ge 4e-40
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 9e-25
3gh1_A 462 Predicted nucleotide-binding protein; structural g 5e-24
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
 Score =  229 bits (587), Expect = 1e-77
 Identities = 96/203 (47%), Positives = 131/203 (64%), Gaps = 29/203 (14%)

Query: 4   KKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEV 63
           +   +SRF+++CVFCGS   ++  +  AAI+LGNELV + +DLVYGGG+VGLMGLIS  V
Sbjct: 2   EDNQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRV 61

Query: 64  HRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEK 123
           + G  HVLGIIP+ALM  E++G T+G+V+ V  MH+RKA MA+ A+ FI LPGG+GT+E+
Sbjct: 62  YEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEE 121

Query: 124 LFEVTTWSQLGVHNKPVAI-----------------------------IMVSASNAKELV 154
           L E+ TWSQLG+H K V +                             I+VSA  AKEL+
Sbjct: 122 LLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELM 181

Query: 155 QKLEDYEPSHDGVVAKAEWDAEK 177
           +K+E+Y PSH  V +   W  E+
Sbjct: 182 EKMEEYTPSHMHVASHESWKVEE 204
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
3gh1_A 462 Predicted nucleotide-binding protein; structural g 100.0
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 100.0
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 100.0
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 99.25
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 99.1
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 97.73
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 97.41
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 95.06
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 94.47
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 94.24
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 93.94
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 92.38
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 92.33
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 91.85
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 91.06
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 89.17
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 89.16
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 88.34
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 88.23
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 87.42
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 86.85
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 85.86
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 85.52
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 85.06
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 83.7
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 82.46
3rss_A 502 Putative uncharacterized protein; unknown function 82.15
3rpz_A 279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 81.35
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
Probab=100.00  E-value=6e-50  Score=333.20  Aligned_cols=170  Identities=56%  Similarity=1.009  Sum_probs=148.2

Q ss_pred             ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCC
Q 044681            8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVT   87 (184)
Q Consensus         8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~   87 (184)
                      +++|++|||||||+.+.++.|++.|++||++||++|+.||||||+.|+|+|+++||+++||+||||+|+.+.+.|+.++.
T Consensus         6 ~~~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~   85 (216)
T 1ydh_A            6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGET   85 (216)
T ss_dssp             CCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSC
T ss_pred             CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCC
Confidence            46788999999999988999999999999999999999999999889999999999999999999999988888999999


Q ss_pred             CceEeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-------------------------
Q 044681           88 LGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-------------------------  142 (184)
Q Consensus        88 ~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-------------------------  142 (184)
                      +++++++.+|++||++|+++||+||+||||+|||||||++|+|.|+|+|+|||++                         
T Consensus        86 ~~~~~~~~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~  165 (216)
T 1ydh_A           86 VGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKP  165 (216)
T ss_dssp             CSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCH
T ss_pred             CCcccccCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCh
Confidence            9999999999999999999999999999999999999999999999999999999                         


Q ss_pred             ----EEEecCCHHHHHHHhhhhcCCCCCccccccccccc
Q 044681          143 ----IMVSASNAKELVQKLEDYEPSHDGVVAKAEWDAEK  177 (184)
Q Consensus       143 ----~i~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~  177 (184)
                          .+++++|++|++++|++|++...+....++|..+.
T Consensus       166 ~~~~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~  204 (216)
T 1ydh_A          166 GARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEE  204 (216)
T ss_dssp             HHHTTEEEESSHHHHHHHHHHCC----------------
T ss_pred             HHcCeEEEeCCHHHHHHHHHHhcccccccccccccchhh
Confidence                57889999999999999999888888889998763
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A* Back     alignment and structure
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 184
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 2e-33
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 4e-33
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 2e-31
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 2e-21
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 2e-17
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 2e-16
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query184
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d2nx2a1177 Hypothetical protein YpsA {Bacillus subtilis [TaxI 97.08
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 94.17
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 93.39
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 92.8
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 91.86
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 89.73
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 88.43
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 86.83
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 86.54
d1jaya_212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 83.39
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-49  Score=320.79  Aligned_cols=152  Identities=59%  Similarity=1.038  Sum_probs=146.0

Q ss_pred             CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCc
Q 044681           10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLG   89 (184)
Q Consensus        10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~   89 (184)
                      +||+|||||||+.+.++.|++.|++||+.||++||.||||||+.|+|+|+++||+++||+|+||+|+.+.+.+..++.++
T Consensus         1 ~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e~~~~~~~   80 (181)
T d1ydhb_           1 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVG   80 (181)
T ss_dssp             CCSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSCCCS
T ss_pred             CCcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhhcCCcccC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999888898999999


Q ss_pred             eEeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE---------------------------
Q 044681           90 EVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI---------------------------  142 (184)
Q Consensus        90 ~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl---------------------------  142 (184)
                      +++.+++|++||..|++.|||||+||||+|||||++++|+|.|++.++||+++                           
T Consensus        81 ~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~  160 (181)
T d1ydhb_          81 DVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGA  160 (181)
T ss_dssp             EEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHH
T ss_pred             cceeeccHHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcccCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999988                           


Q ss_pred             --EEEecCCHHHHHHHhhhhc
Q 044681          143 --IMVSASNAKELVQKLEDYE  161 (184)
Q Consensus       143 --~i~~~~~~~e~~~~l~~~~  161 (184)
                        .+.+++||+|++++|++|.
T Consensus       161 ~~~~~~~d~~ee~~~~l~~~t  181 (181)
T d1ydhb_         161 RNIVVSAPTAKELMEKMEEYT  181 (181)
T ss_dssp             HTTEEEESSHHHHHHHHHHCC
T ss_pred             cCeEEEeCCHHHHHHHHHhhC
Confidence              5788999999999999873
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure