Citrus Sinensis ID: 044689

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVNYNV
cHHHHHHHHHHccccccccccccccEEEEEEEcccccccccccccccccccccccccccEEEEccccccccccccccEEEEEEccccccccccEEEEEEEcccccccccccccEEccHHHHHcccccccccccccccEEEEEEEEEEEccccccEEEEEEccccccEEEEEEEEEcccccEEEEEEEcccccEEEcccccccEEEEcccccccccEEEEEEEEcccEEEEEccccccccccccEEEccccEEc
cEEEEHHHHHHccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccHHHHHHHHcccccHHHHHcccEEEEEEEEcccccccEEEEEEcccccccEEEEEEEEccccccEEEEEEEccccccEEccccccHccHccccccccccEEEEEEEcccccEEEEccccccccccccEEEEEEEEEc
flcylelcscfypkhlnlsavgthwstagatwygspdgagsdggacgygnavsqspfssfvtaigpslyksgkecgacyqvkctrhpacsgraVRVVItdfcpggpcvsesahfdlsgtafgamaipgqeeklrdAGVLEVRYARVAcdysgrniafhvdqgsnpnYLAVVVEFedgdgdlagvdvkegSGEWRAMQQSWGatwkldagselhpplslrltsqyssqtlvannvipqgwmpgatyRSLVNYNV
FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANnvipqgwmpgatyRSLVNYNV
FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWygspdgagsdggacgygNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVNYNV
*LCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVN***
FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVNYN*
FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVNYNV
FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVNYNV
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FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVNYNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query253 2.2.26 [Sep-21-2011]
Q9SHY6273 Putative expansin-B2 OS=A yes no 0.964 0.893 0.589 2e-81
Q5W6Z9264 Expansin-B18 OS=Oryza sat yes no 0.901 0.863 0.632 3e-80
Q7XT40264 Expansin-B15 OS=Oryza sat no no 0.901 0.863 0.632 4e-80
Q7XT39275 Expansin-B5 OS=Oryza sati no no 0.901 0.829 0.623 3e-79
Q6H677273 Putative expansin-B14 OS= no no 0.968 0.897 0.578 2e-76
Q6H676292 Expansin-B11 OS=Oryza sat no no 0.913 0.791 0.619 8e-74
Q9SHD1259 Expansin-B4 OS=Arabidopsi no no 0.972 0.949 0.517 2e-71
Q10G40313 Expansin-B12 OS=Oryza sat no no 0.968 0.782 0.526 3e-69
Q9M203264 Expansin-B5 OS=Arabidopsi no no 0.901 0.863 0.484 3e-63
Q336T5268 Expansin-B3 OS=Oryza sati no no 0.877 0.828 0.508 7e-63
>sp|Q9SHY6|EXPB2_ARATH Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=3 SV=2 Back     alignment and function desciption
 Score =  301 bits (772), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/251 (58%), Positives = 181/251 (72%), Gaps = 7/251 (2%)

Query: 6   ELCSCFYPKHLNLSAVGT---HWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVT 62
            L  CF PK  N+SA  T    WS AG+TWYG+P G GSDGGACGYGNAV+Q PFS  V+
Sbjct: 25  NLTHCFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVS 84

Query: 63  AIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFG 122
           A GPSL+KSGK CGACYQVKCT   ACS   V VVITD CPG  CV ES HFDLSGTAFG
Sbjct: 85  AGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPG--CVKESVHFDLSGTAFG 142

Query: 123 AMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLA 182
           AMAI GQ+ +LR+ G L++ Y +V C+Y G+ + F VD+GSN N  AV+V + +GDG++ 
Sbjct: 143 AMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIG 202

Query: 183 GVDVKEG--SGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWM 240
            +++K+   S +W +M QSWGA WKLD  S L  PLSLR+TS  S +T+VA+NVIP  W 
Sbjct: 203 RIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQ 262

Query: 241 PGATYRSLVNY 251
           PGA Y+S VN+
Sbjct: 263 PGAIYKSNVNF 273
May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5W6Z9|EXB18_ORYSJ Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1 Back     alignment and function description
>sp|Q7XT40|EXB15_ORYSJ Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2 Back     alignment and function description
>sp|Q7XT39|EXPB5_ORYSJ Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2 Back     alignment and function description
>sp|Q6H677|EXB14_ORYSJ Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1 Back     alignment and function description
>sp|Q6H676|EXB11_ORYSJ Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHD1|EXPB4_ARATH Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1 Back     alignment and function description
>sp|Q10G40|EXB12_ORYSJ Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2 Back     alignment and function description
>sp|Q9M203|EXPB5_ARATH Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2 Back     alignment and function description
>sp|Q336T5|EXPB3_ORYSJ Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
225443047279 PREDICTED: putative expansin-B2 [Vitis v 0.992 0.899 0.789 1e-116
83778375279 beta expansin 2 precursor [Solanum tuber 1.0 0.906 0.747 1e-112
350537039285 beta expansin precursor [Solanum lycoper 1.0 0.887 0.726 1e-111
83778373276 beta expansin 1 precursor [Solanum tuber 0.968 0.887 0.673 1e-92
350538529275 beta-expansin precursor [Solanum lycoper 0.968 0.890 0.664 2e-92
224129938274 hypothetical protein POPTRDRAFT_572072 [ 0.968 0.894 0.641 3e-88
255541170272 Beta-expansin 3 precursor, putative [Ric 0.964 0.897 0.636 1e-86
225453525273 PREDICTED: putative expansin-B2 [Vitis v 0.952 0.882 0.635 1e-82
449431962273 PREDICTED: putative expansin-B2-like [Cu 0.960 0.890 0.610 5e-82
225453519273 PREDICTED: putative expansin-B2 [Vitis v 0.960 0.890 0.658 3e-81
>gi|225443047|ref|XP_002269190.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297743578|emb|CBI36445.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/256 (78%), Positives = 223/256 (87%), Gaps = 5/256 (1%)

Query: 1   FLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSF 60
           FLC  E C  F PK+ NLS  GTHW++AGATWYGSP+GAGSDGG+CGYGNAVSQ PFSS 
Sbjct: 23  FLCCFETCHSFKPKYFNLSRAGTHWASAGATWYGSPEGAGSDGGSCGYGNAVSQPPFSSM 82

Query: 61  VTAIGPSLYKSGKECGACYQVKCTR--HPACSGRAVRVVITDFCPGGPCVSESAHFDLSG 118
           +T IGPSLYKSGKECGACYQVKCT+  HP+CSGR VRVVITDFCPGGPC S+SAHFDLSG
Sbjct: 83  ITGIGPSLYKSGKECGACYQVKCTKRMHPSCSGRPVRVVITDFCPGGPCASQSAHFDLSG 142

Query: 119 TAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGD 178
           TAFGAMAIPGQEEKLR+ GVLE+RYARVACDYSG+ IAFHVD G+NPN  +V+VEFE+GD
Sbjct: 143 TAFGAMAIPGQEEKLRNVGVLEIRYARVACDYSGKTIAFHVDLGANPNSFSVLVEFEEGD 202

Query: 179 GDLAGVDVKE---GSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVI 235
           GDLAGV +KE   GSG+WRAMQQSWGA WKLDAG EL PP S++LTSQYS QTLVA NVI
Sbjct: 203 GDLAGVALKETLKGSGKWRAMQQSWGAVWKLDAGYELKPPFSIQLTSQYSGQTLVAKNVI 262

Query: 236 PQGWMPGATYRSLVNY 251
           P GW PG+TYRSLVNY
Sbjct: 263 PDGWKPGSTYRSLVNY 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|83778375|gb|ABC47128.1| beta expansin 2 precursor [Solanum tuberosum] Back     alignment and taxonomy information
>gi|350537039|ref|NP_001233766.1| beta expansin precursor [Solanum lycopersicum] gi|81367673|gb|ABB71677.1| beta expansin precursor [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|83778373|gb|ABC47127.1| beta expansin 1 precursor [Solanum tuberosum] Back     alignment and taxonomy information
>gi|350538529|ref|NP_001234859.1| beta-expansin precursor [Solanum lycopersicum] gi|82569705|gb|ABB83474.1| beta-expansin precursor [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224129938|ref|XP_002320708.1| hypothetical protein POPTRDRAFT_572072 [Populus trichocarpa] gi|222861481|gb|EEE99023.1| hypothetical protein POPTRDRAFT_572072 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541170|ref|XP_002511649.1| Beta-expansin 3 precursor, putative [Ricinus communis] gi|223548829|gb|EEF50318.1| Beta-expansin 3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225453525|ref|XP_002278559.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297734537|emb|CBI16588.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449431962|ref|XP_004133769.1| PREDICTED: putative expansin-B2-like [Cucumis sativus] gi|449526511|ref|XP_004170257.1| PREDICTED: putative expansin-B2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225453519|ref|XP_002275557.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297734541|emb|CBI16592.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
TAIR|locus:2018521273 EXPB2 "expansin B2" [Arabidops 0.968 0.897 0.535 7.2e-68
TAIR|locus:2055594259 EXPB4 "expansin B4" [Arabidops 0.972 0.949 0.462 1.7e-59
TAIR|locus:4515102723223 EXPB6 "AT1G65681" [Arabidopsis 0.794 0.901 0.527 1.1e-55
TAIR|locus:2051338271 EXPB1 "expansin B1" [Arabidops 0.936 0.874 0.416 8.3e-51
TAIR|locus:2123643264 EXPB3 "expansin B3" [Arabidops 0.920 0.882 0.421 5.8e-50
TAIR|locus:2077167263 EXLA3 "expansin-like A3" [Arab 0.747 0.718 0.333 5.7e-27
TAIR|locus:2130444250 EXLB1 "expansin-like B1" [Arab 0.699 0.708 0.381 4e-26
TAIR|locus:2121803265 EXLA2 "expansin-like A2" [Arab 0.727 0.694 0.316 2.2e-25
TAIR|locus:2015539257 EXPA18 "expansin A18" [Arabido 0.861 0.848 0.341 4.6e-25
TAIR|locus:2077177265 EXLA1 "expansin-like A1" [Arab 0.750 0.716 0.32 1.2e-24
TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 135/252 (53%), Positives = 167/252 (66%)

Query:     5 LELCSCFYPKHLNLSAVGTH---WSTAGATWXXXXXXXXXXXXXXXXXNAVSQSPFSSFV 61
             L L  CF PK  N+SA  T    WS AG+TW                 NAV+Q PFS  V
Sbjct:    24 LNLTHCFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMV 83

Query:    62 TAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAF 121
             +A GPSL+KSGK CGACYQVKCT   ACS   V VVITD CPG  CV ES HFDLSGTAF
Sbjct:    84 SAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPG--CVKESVHFDLSGTAF 141

Query:   122 GAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDL 181
             GAMAI GQ+ +LR+ G L++ Y +V C+Y G+ + F VD+GSN N  AV+V + +GDG++
Sbjct:   142 GAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEI 201

Query:   182 AGVDVKEG--SGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGW 239
               +++K+   S +W +M QSWGA WKLD  S L  PLSLR+TS  S +T+VA+NVIP  W
Sbjct:   202 GRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANW 261

Query:   240 MPGATYRSLVNY 251
              PGA Y+S VN+
Sbjct:   262 QPGAIYKSNVNF 273
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
GO:0019953 "sexual reproduction" evidence=IEA
TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515102723 EXPB6 "AT1G65681" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077167 EXLA3 "expansin-like A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121803 EXLA2 "expansin-like A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015539 EXPA18 "expansin A18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077177 EXLA1 "expansin-like A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SHY6EXPB2_ARATHNo assigned EC number0.58960.96440.8937yesno
Q5W6Z9EXB18_ORYSJNo assigned EC number0.63200.90110.8636yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033241001
SubName- Full=Chromosome chr9 scaffold_65, whole genome shotgun sequence; (279 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 4e-44
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 5e-37
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 4e-35
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 6e-26
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 3e-21
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 5e-11
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 1e-06
PLN00115118 PLN00115, PLN00115, pollen allergen group 3; Provi 4e-06
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information 
 Score =  148 bits (376), Expect = 4e-44
 Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 13/225 (5%)

Query: 30  ATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPAC 89
           AT+YGSPD  G+  GACG+G    ++     V  +   LY++G  CGACYQV+C     C
Sbjct: 30  ATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLC 87

Query: 90  SGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACD 149
           S   V VV+TD+  G     +   F LS  A+  +A P    +L   GV++V Y R+ C 
Sbjct: 88  SDDGVNVVVTDYGEG-----DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCR 142

Query: 150 YSGRNIAFHVDQGS-NPNYLAVVVEFEDGDGDLAGVDV-KEGSGEWRAMQQSWGATWKLD 207
           Y+G N+ F V + S  P+YLA+V+ ++ G  D+  V++ +E   EWR M++++GA W  D
Sbjct: 143 YAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVW--D 200

Query: 208 AGSELHPPLSLR-LTSQYSSQTLV-ANNVIPQGWMPGATYRSLVN 250
             +    P++LR   S  + QT V A NVIP  W  G  Y S + 
Sbjct: 201 MPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQ 245

Length = 247
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>gnl|CDD|177729 PLN00115, PLN00115, pollen allergen group 3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 253
PLN00193256 expansin-A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.97
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.94
PLN00115118 pollen allergen group 3; Provisional 99.93
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.91
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.89
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.78
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 99.09
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.21
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.78
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 96.97
PRK10672361 rare lipoprotein A; Provisional 96.72
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 93.3
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-64  Score=446.37  Aligned_cols=217  Identities=33%  Similarity=0.723  Sum_probs=201.1

Q ss_pred             CCCCeeEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEEC---CCCCCC-CCcEEE
Q 044689           21 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCT---RHPACS-GRAVRV   96 (253)
Q Consensus        21 ~~~~~~~G~aT~Y~~~~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~---~~~~C~-~~~v~v   96 (253)
                      +.++|.+++||||+++|+.++++|||||++ +...+++.++||+|+++|++|+.||+||||+|.   +++.|. +++|+|
T Consensus        26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~V  104 (256)
T PLN00193         26 TPSGWTKAHATFYGGSDASGTMGGACGYGN-LYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTI  104 (256)
T ss_pred             CCCCceeeEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEE
Confidence            566899999999999999889999999998 567889999999999999999999999999994   566786 459999


Q ss_pred             EEeecCCCC---------CCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCCcceEEEEccCCCCce
Q 044689           97 VITDFCPGG---------PCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNY  167 (253)
Q Consensus        97 ~V~D~Cp~~---------~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~GSs~~w  167 (253)
                      +|||+||.+         ||.+++.|||||..||.+||.       ++.|+++|+||||+|+++| +|+|+++  +++||
T Consensus       105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~--gn~y~  174 (256)
T PLN00193        105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTIN--GRDYF  174 (256)
T ss_pred             EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEc--CCccE
Confidence            999999962         898889999999999999998       6899999999999999998 8999999  48999


Q ss_pred             eEEEEEEecCCCCeeEEEEEccCCceEEccccCcceeEeCCCCCCCC-CeEEEEEEeeCCeEEEEcccccCCCCCCcEEe
Q 044689          168 LAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHP-PLSLRLTSQYSSQTLVANNVIPQGWMPGATYR  246 (253)
Q Consensus       168 ~av~v~n~~g~g~I~sVev~~~~~~w~~m~r~~g~~W~~~~~~~~~~-p~~~RvT~~~~G~~iv~~~vip~~~~~G~~y~  246 (253)
                      ++|+|.|++|.++|++|+|++++++|++|+|+||++|+++..  +.+ ||+||||+ .+|+++++.||||++|++|++|+
T Consensus       175 ~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~--l~g~plsfRvts-~~G~~~~~~~viPa~W~~G~ty~  251 (256)
T PLN00193        175 ELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAY--LDGQSLSFKVTT-TDGQTRFFLNVVPANWGFGQTFS  251 (256)
T ss_pred             EEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCC--CCCCCEEEEEEE-cCCeEEEECceeCCCCCCCCeEe
Confidence            999999999999999999999867899999999999999873  565 99999999 99999999999999999999999


Q ss_pred             cCccc
Q 044689          247 SLVNY  251 (253)
Q Consensus       247 t~~qf  251 (253)
                      +.+||
T Consensus       252 s~vqf  256 (256)
T PLN00193        252 SSVQF  256 (256)
T ss_pred             cCccC
Confidence            99998

>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>PLN00050 expansin A; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 3e-45
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 8e-45
1bmw_A96 A Fibronectin Type Iii Fold In Plant Allergens: The 6e-10
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure 
Iteration: 1

 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 141/241 (58%), Gaps = 12/241 (4%)
Query: 13  PKHLNLSAV-GTHWSTAGATWXXXXXXXXXXXXXXX-XXNAVSQSPFSSFVTAIGPSLYK 70
           P   N++A  G  W  A +TW                    V + PFS         ++K
Sbjct: 6   PPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFK 65
Query: 71  SGKECGACYQVKCTRHPACSGRAVRVVITDFC--PGGPCVSESAHFDLSGTAFGAMAIPG 128
           SG+ CG+C+++KCT+  ACSG  V V ITD    P  P      HFDLSG AFGAMA  G
Sbjct: 66  SGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAP-----YHFDLSGHAFGAMAKKG 120
Query: 129 QEEKLRDAGVLEVRYARVACDY-SGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVK 187
            E+KLR AG LE+++ RV C Y  G  + FHV++GSNPNYLA++V++ +GDGD+  VD+K
Sbjct: 121 DEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIK 180
Query: 188 E-GSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYR 246
           E G  +W  +++SWGA W++D   +L  P ++R T++  ++T  A +VIP+GW    +Y 
Sbjct: 181 EKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKT-EAEDVIPEGWKADTSYE 239
Query: 247 S 247
           S
Sbjct: 240 S 240
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The Solution Structure Of Phl Pii From Timothy Grass Pollen, Nmr, 38 Structures Length = 96 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 3e-70
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 5e-69
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 3e-51
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 1e-37
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 4e-36
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 3e-33
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 1e-11
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  215 bits (547), Expect = 3e-70
 Identities = 105/244 (43%), Positives = 148/244 (60%), Gaps = 10/244 (4%)

Query: 13  PKHLNLSAV-GTHWSTAGATWYGSPDGAGSD--GGACGYGNAVSQSPFSSFVTAIGPSLY 69
           P   N++      W TA ATWYG P+GAG+   GGACG  N V+  P+S         ++
Sbjct: 6   PPGPNITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKN-VNLPPYSGMTACGNVPIF 64

Query: 70  KSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQ 129
           K GK CG+CY+V+C   P CSG  V V ITD            HFDLSG AFG++A PG 
Sbjct: 65  KDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIA---PYHFDLSGKAFGSLAKPGL 121

Query: 130 EEKLRDAGVLEVRYARVACDYS-GRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE 188
            +K+R  G+++V + RV C Y  G+ I FH+++G NPNYLAV+V++   DGD+  +++++
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181

Query: 189 -GSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRS 247
             S EW+ M+ SWGA W++D    L  P S+RLTS+ S + ++A +VIP  W P A Y S
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSE-SGKKVIAKDVIPANWRPDAVYTS 240

Query: 248 LVNY 251
            V +
Sbjct: 241 NVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.97
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.96
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.95
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.93
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.67
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.24
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.14
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 98.11
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.07
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.98
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.92
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.72
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 94.97
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=1.5e-68  Score=472.29  Aligned_cols=227  Identities=45%  Similarity=0.949  Sum_probs=212.2

Q ss_pred             cCCCCeeEEEEEEeCCCCCCCC--CcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEECCCCCCCCCcEEEE
Q 044689           20 AVGTHWSTAGATWYGSPDGAGS--DGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVV   97 (253)
Q Consensus        20 ~~~~~~~~G~aT~Y~~~~~~~~--~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~~v~v~   97 (253)
                      +-+++|+.|+||||+.+++.++  ++|||||++ ++..|++.++||+++.+|++|+.||+||||+|.+++.|++++|+|+
T Consensus        14 ~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~-~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~~sv~V~   92 (245)
T 2hcz_X           14 NYNGKWLTARATWYGQPNGAGAPDNGGACGIKN-VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVY   92 (245)
T ss_dssp             CCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCC-TTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEE
T ss_pred             ccCCceeeeEEEEeCCCCCCCcCCCCccCCCCC-CCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCCCCEEEE
Confidence            3457899999999999988777  799999999 6778999999999999999999999999999998888999999999


Q ss_pred             EeecCCCCCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCC-cceEEEEccCCCCceeEEEEEEec
Q 044689           98 ITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSG-RNIAFHVDQGSNPNYLAVVVEFED  176 (253)
Q Consensus        98 V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g-~ni~~~v~~GSs~~w~av~v~n~~  176 (253)
                      |||+|+   |.++..|||||+.||.+||++|++++|++.|+++|+||+|+|++++ .||+|++++||++||++|+|.|++
T Consensus        93 VtD~C~---C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~avlv~n~~  169 (245)
T 2hcz_X           93 ITDMNY---EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVA  169 (245)
T ss_dssp             EEEECC---CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCCCEEEECCC
T ss_pred             EEeccC---CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceEEEEEEecC
Confidence            999997   7556899999999999999999999999999999999999999983 589999999999999999999999


Q ss_pred             CCCCeeEEEEEcc-CCceEEccccCcceeEeCCCCCCCCCeEEEEEEeeCCeEEEEcccccCCCCCCcEEecCccc
Q 044689          177 GDGDLAGVDVKEG-SGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVNY  251 (253)
Q Consensus       177 g~g~I~sVev~~~-~~~w~~m~r~~g~~W~~~~~~~~~~p~~~RvT~~~~G~~iv~~~vip~~~~~G~~y~t~~qf  251 (253)
                      |.++|++|||+++ .+.|++|+|+|||+|+++++.+|.+||+||||+ .+|++|++.||||++|++|++|++++||
T Consensus       170 g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~gpls~RvT~-~~G~~v~~~nViP~~w~~g~ty~~~~qf  244 (245)
T 2hcz_X          170 DDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS-ESGKKVIAKDVIPANWRPDAVYTSNVQF  244 (245)
T ss_dssp             TTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCSSCCEEEEE-TTSCEEEESCSCCSSCCTTCEEECSCCC
T ss_pred             CCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCCCEEEEEEE-eCCcEEEEeeeecCCCCCCCEEeCcccc
Confidence            8889999999998 459999999999999998864478999999999 9999999999999999999999999999
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 253
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 2e-42
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 1e-38
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 5e-35
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 2e-24
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  139 bits (352), Expect = 2e-42
 Identities = 65/142 (45%), Positives = 81/142 (57%), Gaps = 6/142 (4%)

Query: 13  PKHLNLSAVGTHWSTAGATWYGSPDGAGSD--GGACGYGNAVSQSPFSSFVTAIGPSLYK 70
           P     +  G  W  A +TWYG P GAG    GGACGY + V + PFS         ++K
Sbjct: 5   PGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFK 63

Query: 71  SGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQE 130
           SG+ CG+C+++KCT+  ACSG  V V ITD            HFDLSG AFGAMA  G E
Sbjct: 64  SGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIA---PYHFDLSGHAFGAMAKKGDE 120

Query: 131 EKLRDAGVLEVRYARVACDYSG 152
           +KLR AG LE+++ RV C Y  
Sbjct: 121 QKLRSAGELELQFRRVKCKYPE 142
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 99.97
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.96
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.95
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.7
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 93.49
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=3.3e-38  Score=255.81  Aligned_cols=136  Identities=48%  Similarity=0.911  Sum_probs=115.0

Q ss_pred             ccccccccCCCCeeEEEEEEeCCCCCCCC--CcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEECCCCCCC
Q 044689           13 PKHLNLSAVGTHWSTAGATWYGSPDGAGS--DGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACS   90 (253)
Q Consensus        13 ~~~~~~~~~~~~~~~G~aT~Y~~~~~~~~--~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~   90 (253)
                      |..+..++-.++|++|+||||+.+++.++  .+|||||++ +...|++.++||+|+.+|++|..||+||||+|.++..|.
T Consensus         5 ~~~~~~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~-~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~   83 (143)
T d1n10a2           5 PGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACS   83 (143)
T ss_dssp             CCSCCCCBCCCSCEEEEEEEEC----------CCTTCCCC-TTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBC
T ss_pred             CCCCcccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCC-cccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCccc
Confidence            44444456678999999999998887654  379999998 667799999999999999999999999999999988899


Q ss_pred             CCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCC
Q 044689           91 GRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSG  152 (253)
Q Consensus        91 ~~~v~v~V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g  152 (253)
                      +++|+|+|||.||.  | .+..|||||+.||.+||+++++.++++.|+++|+||||+|+++|
T Consensus        84 ~~sv~V~vtd~c~~--~-~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          84 GEPVVVHITDDNEE--P-IAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             SCCEEEEEEEECSS--C-SSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             CCCEEEEEEecccC--C-CCCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            99999999999995  3 33689999999999999988777788999999999999999987
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure