Citrus Sinensis ID: 044692


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60-
SKSNQYPNTSLIHIEGVNTKEEVPHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI
ccccccccccEEEEEEEEccEEcccccccEEEEEEcccccccccccccccEEEEEEEEccc
ccccccccEEEEEEEccccccccccccccEEEEEEccccccccEEEHcccEEEEEEccccc
sksnqypntslihiegvntkeevphgnsgvvrakfksnlppspwylnhgdrvrvvmypgni
sksnqypntslihiegvntkeevPHGNSGVVRAKFKsnlppspwylnhgdrvrVVMYPGNI
SKSNQYPNTSLIHIEGVNTKEEVPHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI
*****************************************SPWYLNHGDRVRVVMY****
***********IHIEGVNTKEEVPHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI
SKSNQYPNTSLIHIEGVNTKEEVPHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI
*****YPNTSLIHIEGVNTKEEVPHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGN*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SKSNQYPNTSLIHIEGVNTKEEVPHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query61 2.2.26 [Sep-21-2011]
Q9C912112 60S ribosomal protein L35 yes no 0.934 0.508 0.505 4e-14
Q9FZH0111 60S ribosomal protein L35 no no 0.934 0.513 0.505 9e-14
Q9LMK0112 60S ribosomal protein L35 yes no 0.934 0.508 0.494 1e-13
P51422111 60S ribosomal protein L35 yes no 0.934 0.513 0.494 1e-13
Q9USX4108 60S ribosomal protein L33 yes no 0.934 0.527 0.354 2e-06
Q55BN7105 60S ribosomal protein L35 yes no 0.934 0.542 0.351 8e-06
P49180124 60S ribosomal protein L35 yes no 0.557 0.274 0.578 1e-05
Q9USG6108 60S ribosomal protein L33 no no 0.934 0.527 0.333 3e-05
P41056107 60S ribosomal protein L33 yes no 0.836 0.476 0.356 8e-05
Q56JY1110 60S ribosomal protein L35 yes no 0.885 0.490 0.315 0.0002
>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1 Back     alignment and function desciption
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 50/93 (53%), Gaps = 36/93 (38%)

Query: 1   SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
           SKSNQYPNTSL+ IEGVNT+EEV                                PHGNS
Sbjct: 24  SKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNS 83

Query: 29  GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
           GVVRAKF SNLPP     + G RVRV MYP NI
Sbjct: 84  GVVRAKFTSNLPPK----SMGSRVRVFMYPSNI 112





Arabidopsis thaliana (taxid: 3702)
>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1 Back     alignment and function description
>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1 Back     alignment and function description
>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2 Back     alignment and function description
>sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl33a PE=3 SV=2 Back     alignment and function description
>sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1 Back     alignment and function description
>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3 Back     alignment and function description
>sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl33b PE=1 SV=1 Back     alignment and function description
>sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2 Back     alignment and function description
>sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query61
313586489112 60S ribosomal protein L35aA [Hevea brasi 0.934 0.508 0.548 2e-14
449465053 446 PREDICTED: probable sugar phosphate/phos 0.934 0.127 0.505 3e-14
224101037112 predicted protein [Populus trichocarpa] 0.934 0.508 0.537 9e-14
224098507112 predicted protein [Populus trichocarpa] 0.934 0.508 0.537 1e-13
225440584112 PREDICTED: 60S ribosomal protein L35a-1- 0.934 0.508 0.537 1e-13
13430186112 ribosomal protein L33 [Castanea sativa] 0.934 0.508 0.537 1e-13
224109468112 predicted protein [Populus trichocarpa] 0.934 0.508 0.537 1e-13
357492529 657 Maturase [Medicago truncatula] gi|355517 0.885 0.082 0.5 1e-13
209967441112 60S ribosomal protein L35a [Vernicia for 0.934 0.508 0.537 1e-13
351724207112 uncharacterized protein LOC100305958 [Gl 0.934 0.508 0.537 2e-13
>gi|313586489|gb|ADR71255.1| 60S ribosomal protein L35aA [Hevea brasiliensis] Back     alignment and taxonomy information
 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 52/93 (55%), Gaps = 36/93 (38%)

Query: 1   SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
           SKSNQYPNTSLI IEGVNTKEEV                                PHGNS
Sbjct: 24  SKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNS 83

Query: 29  GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
           GVVRAKFKSNLPP     + GDRVRV MYP NI
Sbjct: 84  GVVRAKFKSNLPPK----SMGDRVRVFMYPSNI 112




Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465053|ref|XP_004150243.1| PREDICTED: probable sugar phosphate/phosphate translocator At3g11320-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224101037|ref|XP_002312115.1| predicted protein [Populus trichocarpa] gi|118488215|gb|ABK95927.1| unknown [Populus trichocarpa] gi|222851935|gb|EEE89482.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224098507|ref|XP_002311198.1| predicted protein [Populus trichocarpa] gi|118483364|gb|ABK93583.1| unknown [Populus trichocarpa] gi|118484807|gb|ABK94271.1| unknown [Populus trichocarpa] gi|222851018|gb|EEE88565.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225440584|ref|XP_002277272.1| PREDICTED: 60S ribosomal protein L35a-1-like isoform 1 [Vitis vinifera] gi|225449234|ref|XP_002280039.1| PREDICTED: 60S ribosomal protein L35a-1 [Vitis vinifera] gi|359481695|ref|XP_003632660.1| PREDICTED: 60S ribosomal protein L35a-1-like isoform 2 [Vitis vinifera] gi|147823354|emb|CAN64195.1| hypothetical protein VITISV_014336 [Vitis vinifera] gi|296086107|emb|CBI31548.3| unnamed protein product [Vitis vinifera] gi|297740261|emb|CBI30443.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|13430186|gb|AAK25760.1|AF334840_1 ribosomal protein L33 [Castanea sativa] Back     alignment and taxonomy information
>gi|224109468|ref|XP_002315206.1| predicted protein [Populus trichocarpa] gi|222864246|gb|EEF01377.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357492529|ref|XP_003616553.1| Maturase [Medicago truncatula] gi|355517888|gb|AES99511.1| Maturase [Medicago truncatula] Back     alignment and taxonomy information
>gi|209967441|gb|ACJ02349.1| 60S ribosomal protein L35a [Vernicia fordii] Back     alignment and taxonomy information
>gi|351724207|ref|NP_001235514.1| uncharacterized protein LOC100305958 [Glycine max] gi|255627103|gb|ACU13896.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query61
GENEDB_PFALCIPARUM|PF11_0438140 PF11_0438 "Ribosomal protein, 0.540 0.235 0.621 1.1e-12
UNIPROTKB|Q8IHT9140 PF11_0438 "60S ribosomal prote 0.540 0.235 0.621 1.1e-12
DICTYBASE|DDB_G0270424105 rpl35a "S60 ribosomal protein 0.540 0.314 0.540 1.6e-10
ASPGD|ASPL0000041158109 AN2980 [Emericella nidulans (t 0.557 0.311 0.578 2.6e-10
WB|WBGene00004447124 rpl-33 [Caenorhabditis elegans 0.557 0.274 0.578 4.2e-10
POMBASE|SPCP31B10.08c108 rpl35a "60S ribosomal protein 0.557 0.314 0.526 8.6e-10
SGD|S000005760107 RPL33B "Ribosomal 60S subunit 0.540 0.308 0.540 1.4e-09
UNIPROTKB|F1NQ35113 RPL35A "Uncharacterized protei 0.540 0.292 0.567 2.8e-09
UNIPROTKB|Q56JY1110 RPL35A "60S ribosomal protein 0.540 0.3 0.567 2.8e-09
UNIPROTKB|E2QYD8110 RPL35A "Uncharacterized protei 0.540 0.3 0.567 2.8e-09
GENEDB_PFALCIPARUM|PF11_0438 PF11_0438 "Ribosomal protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
 Score = 124 (48.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query:    25 HGNSGVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
             HGNSGV+RAKFK+++PP  +    GDRVR++MYP NI
Sbjct:   108 HGNSGVIRAKFKTHIPPKAF----GDRVRILMYPSNI 140


GO:0015934 "large ribosomal subunit" evidence=ISS
UNIPROTKB|Q8IHT9 PF11_0438 "60S ribosomal protein L35Ae, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270424 rpl35a "S60 ribosomal protein L35a" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000041158 AN2980 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00004447 rpl-33 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
POMBASE|SPCP31B10.08c rpl35a "60S ribosomal protein L35a" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000005760 RPL33B "Ribosomal 60S subunit protein L33B" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQ35 RPL35A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q56JY1 RPL35A "60S ribosomal protein L35a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYD8 RPL35A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

No confident hit detected by STRING


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query61
PTZ00041120 PTZ00041, PTZ00041, 60S ribosomal protein L35a; Pr 9e-20
pfam0124795 pfam01247, Ribosomal_L35Ae, Ribosomal protein L35A 2e-17
COG2451100 COG2451, COG2451, Ribosomal protein L35AE/L33A [Tr 4e-13
PRK0433787 PRK04337, PRK04337, 50S ribosomal protein L35Ae; V 1e-04
>gnl|CDD|240239 PTZ00041, PTZ00041, 60S ribosomal protein L35a; Provisional Back     alignment and domain information
 Score = 75.1 bits (185), Expect = 9e-20
 Identities = 39/93 (41%), Positives = 45/93 (48%), Gaps = 36/93 (38%)

Query: 1   SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28
           SK NQYPN +L+ IEGVNT+E+                                 PHGNS
Sbjct: 32  SKVNQYPNVALLKIEGVNTREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGKITRPHGNS 91

Query: 29  GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61
           GVVRA+F  NLPP       G RVRV +YP NI
Sbjct: 92  GVVRARFNKNLPPKAI----GSRVRVFLYPSNI 120


Length = 120

>gnl|CDD|189906 pfam01247, Ribosomal_L35Ae, Ribosomal protein L35Ae Back     alignment and domain information
>gnl|CDD|225295 COG2451, COG2451, Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|179831 PRK04337, PRK04337, 50S ribosomal protein L35Ae; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 61
PTZ00041120 60S ribosomal protein L35a; Provisional 100.0
KOG0887111 consensus 60S ribosomal protein L35A/L37 [Translat 99.97
PF0124795 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro 99.95
PRK0433787 50S ribosomal protein L35Ae; Validated 99.94
COG2451100 Ribosomal protein L35AE/L33A [Translation, ribosom 99.94
PF0985353 DUF2080: Putative transposon-encoded protein (DUF2 87.7
>PTZ00041 60S ribosomal protein L35a; Provisional Back     alignment and domain information
Probab=100.00  E-value=2.5e-34  Score=190.26  Aligned_cols=57  Identities=68%  Similarity=1.168  Sum_probs=56.0

Q ss_pred             CCccccCCeeEEEecCcCCCCCC--------------------------------CCCCCcEEEEEecCCCCCCccccCC
Q 044692            1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNSGVVRAKFKSNLPPSPWYLNH   48 (61)
Q Consensus         1 ~~~nQ~~~taLlkiegV~~k~~a--------------------------------~HGnsGvvrAkFk~nLPp~a~~~~~   48 (61)
                      |++||+|||||||||||++++||                                +|||||+|||+|++||||+|    |
T Consensus        32 g~~nQ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka~~~~~~~k~RviwGKVtR~HGnsGvVrAkF~~nLPp~A----~  107 (120)
T PTZ00041         32 SKVNQYPNVALLKIEGVNTREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGKITRPHGNSGVVRARFNKNLPPKA----I  107 (120)
T ss_pred             ccccCCCceEEEEecCcCChhhhHhhccceEEEEEcCccccCCcceeEEEEEEEcccCCCcEEEEEeCCCCChHH----c
Confidence            68999999999999999999999                                99999999999999999999    9


Q ss_pred             CCeEEEEEeecCC
Q 044692           49 GDRVRVVMYPGNI   61 (61)
Q Consensus        49 g~~VrV~lYPs~i   61 (61)
                      |++||||||||+|
T Consensus       108 G~~VrVmlyPs~i  120 (120)
T PTZ00041        108 GSRVRVFLYPSNI  120 (120)
T ss_pred             CCeEEEEEccCCC
Confidence            9999999999997



>KOG0887 consensus 60S ribosomal protein L35A/L37 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK04337 50S ribosomal protein L35Ae; Validated Back     alignment and domain information
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09853 DUF2080: Putative transposon-encoded protein (DUF2080); InterPro: IPR019205 This entry, found in various hypothetical archaeal proteins, has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query61
3izr_j111 Localization Of The Large Subunit Ribosomal Protein 1e-14
3izs_j107 Localization Of The Large Subunit Ribosomal Protein 2e-05
>pdb|3IZR|JJ Chain j, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 111 Back     alignment and structure

Iteration: 1

Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 51/93 (54%), Gaps = 36/93 (38%) Query: 1 SKSNQYPNTSLIHIEGVNTKEEV--------------------------------PHGNS 28 SKSNQY NTSL+ IEGVNTKEEV PHGNS Sbjct: 23 SKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNS 82 Query: 29 GVVRAKFKSNLPPSPWYLNHGDRVRVVMYPGNI 61 GVVRAKF+SNLPP+ + G +VRV MYP +I Sbjct: 83 GVVRAKFRSNLPPT----SMGKKVRVFMYPSSI 111
>pdb|3IZS|JJ Chain j, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query61
1sqr_A95 50S ribosomal protein L35AE; PFR48, structure, aut 1e-17
3izc_j107 60S ribosomal protein RPL33 (L35AE); eukaryotic ri 3e-17
3iz5_J166 60S ribosomal protein L12 (L11P); eukaryotic ribos 5e-17
4a18_H113 RPL35A; ribosome, eukaryotic initiation factor 6, 2e-15
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A Length = 95 Back     alignment and structure
 Score = 68.7 bits (168), Expect = 1e-17
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 28/85 (32%)

Query: 1  SKSNQYPNTSLIHIEGVNTKEEV------------------------PHGNSGVVRAKFK 36
          SK NQ+ N  +I    VN++EE                          HG  G VRA+F+
Sbjct: 13 SKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFE 72

Query: 37 SNLPPSPWYLNHGDRVRVVMYPGNI 61
            LP        GD V +V+   + 
Sbjct: 73 KGLPGQAL----GDYVEIVLEHHHH 93


>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H Length = 113 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query61
3iz5_j111 60S ribosomal protein L35A (L35AE); eukaryotic rib 100.0
3izc_j107 60S ribosomal protein RPL33 (L35AE); eukaryotic ri 100.0
4a18_H113 RPL35A; ribosome, eukaryotic initiation factor 6, 99.97
1sqr_A95 50S ribosomal protein L35AE; PFR48, structure, aut 99.96
3j21_c87 50S ribosomal protein L35AE; archaea, archaeal, KI 99.94
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H Back     alignment and structure
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A Back     alignment and structure
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 61
d1sqra_87 b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus 7e-17
>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus [TaxId: 2261]} Length = 87 Back     information, alignment and structure

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L35ae
domain: Ribosomal protein L35ae
species: Pyrococcus furiosus [TaxId: 2261]
 Score = 65.5 bits (160), Expect = 7e-17
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 28/79 (35%)

Query: 1  SKSNQYPNTSLIHIEGVNTKEEV------------------------PHGNSGVVRAKFK 36
          SK NQ+ N  +I    VN++EE                          HG  G VRA+F+
Sbjct: 13 SKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFE 72

Query: 37 SNLPPSPWYLNHGDRVRVV 55
            LP        GD V +V
Sbjct: 73 KGLPGQAL----GDYVEIV 87


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query61
d1sqra_87 Ribosomal protein L35ae {Pyrococcus furiosus [TaxI 99.95
d2f1la289 16S rRNA processing protein RimM, N-terminal domai 81.42
>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L35ae
domain: Ribosomal protein L35ae
species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.95  E-value=9.7e-30  Score=158.28  Aligned_cols=51  Identities=45%  Similarity=0.658  Sum_probs=50.1

Q ss_pred             CCccccCCeeEEEecCcCCCCCC------------------------CCCCCcEEEEEecCCCCCCccccCCCCeEEEE
Q 044692            1 SKSNQYPNTSLIHIEGVNTKEEV------------------------PHGNSGVVRAKFKSNLPPSPWYLNHGDRVRVV   55 (61)
Q Consensus         1 ~~~nQ~~~taLlkiegV~~k~~a------------------------~HGnsGvvrAkFk~nLPp~a~~~~~g~~VrV~   55 (61)
                      |++||+|||||||||||++++||                        +|||||+|||||++||||||    ||++||||
T Consensus        13 g~~nq~~~~~Llkiegv~~k~~a~fylGKrv~y~~~~~r~iwGKVtr~HGnsGvVrAkF~~nLP~qa----~G~~VrVm   87 (87)
T d1sqra_          13 SKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQA----LGDYVEIV   87 (87)
T ss_dssp             CSSSSSCCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEEEECSSCCSSSC----TTCEEECC
T ss_pred             ccccCCCCEEEEEEcCcCCHHHHHhhcCcEEEEECCCCcEEEeeEeeecCCCceEEEEecCCCChHH----cCCEEEeC
Confidence            78999999999999999999999                        99999999999999999999    99999998



>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure