Citrus Sinensis ID: 044693

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------
MAPLRSTGYVDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCLNMRKNLEGCRSGRKRSQSENEQASLSFHSSDYNDTEDALTGYKHRGKKVMSDKNLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKENMKWHRTGRRHRKPDTKEISAFYMQSDNEDEEEEDDNRFLQCVTKDIVAIDDKVSDTEVRYNVKGRSPSSSGNGTEPPVRRSRLDSVFLKSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESERQTIQEDEEILYNGMEPFYGDEIDENENEERRSAEMVALAGLVEPLEVNPAAGGVTTDDDGLDFLDDDLTD
ccccccccccccccccccEEcccccEEEEcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccHHHccccccccccccccccEEEEccccccEEEEcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHccccccccccccccHHHHccccEEEEEcccccccccccccccccccccccccccHHHHccccccccHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
cccccccccccccHHccEEccccccEEEEEcccHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccEEcccccEEEEcccccccccccccHHccEcccccccEEEEEccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccHHHEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcccHHHHccccccccccccccccccccccccccHcccccHHHHcccccHHHHcccccccccccccccccccccccccccccc
maplrstgyvdpgwehgiaqderkkkvkcnycgkivsggiFRLKQHLARMSgevthcekvpddvcLNMRKnlegcrsgrkrsqseneqaslsfhssdyndtedaLTGYkhrgkkvmsdknlvirfaplrslgymdpgwehcvaqdekkkrvkcNYCEKIISGGINRFKQHLaripgevaycdkapeDVYLKIKENMkwhrtgrrhrkpdtkEISAFYMqsdnedeeeeddnrfLQCVTKDIVaiddkvsdtevrynvkgrspsssgngteppvrrsrlDSVFLKSlksqtspysghvkakTGIEKKIRKEVISAICKFFyhagipsnaanspyFHNMLELVGqygqglqgpssrlisGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVscprglyfissmdatdsIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRnlfwtpcaVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTkgqellrpattkfATSFNTLQSLLDQRIGLKRLFqsnkwlssrfsksdegkEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIhgddarkygpfwsvidsqwnslfhhplhvaayflnpsyryrpdfimhpeiIRGLNECIVRLEvdngkrisasmqipdfvsaradfgtdlaistrseldpaawwqqhgISCLELQRIAIRILSQtcssvgcehtwstydQVHSRRRnclsrkrwndLTYVHYNLRLRecqlgrksddaisfDNAMLESILDDWLVESERQTIQEDEEILyngmepfygdeidenenEERRSAEMVALAGLveplevnpaaggvttdddgldfldddltd
maplrstgyvdpgwehgiaqderkkkvkcNYCGKIVSGGIFRLKQHLARMSGEVthcekvpddvcLNMRKNLEgcrsgrkrsqseneqaslsfhssdyndTEDALTGYKhrgkkvmsdknlVIRFAPLRSLGYMDPGWEHCVaqdekkkrvKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKenmkwhrtgrrhrkpdtkeISAFYMQsdnedeeeeddNRFLQCVTKdivaiddkvsdtevrynvkgrspsssgngteppvrrsRLDSVFLKslksqtspysghvkaktgiekkIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKrlfqsnkwlssrfsksdegkemEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSsvgcehtwstydqvhsrrrnclsrkrwndLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESERQTIQEDEEILYNGMEPFYGDEIDENENEERRSAEMVALAGLVEPLEvnpaaggvttdddgldfldddltd
MAPLRSTGYVDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCLNMRKNLEGCRSGRKRSQSENEQASLSFHSSDYNDTEDALTGYKHRGKKVMSDKNLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKENMKWHRTGRRHRKPDTKEISAFYMQSdnedeeeeddnRFLQCVTKDIVAIDDKVSDTEVRYNVKGRSPSSSGNGTEPPVRRSRLDSVFLKSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESERQTIQEDEEILYNGMEPFYGdeideneneerrSAEMVALAGLVEPLEVNPAAggvttdddgldfldddltd
*********VDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCLNMR*********************************************VMSDKNLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKENMKWH*********************************FLQCVTKDIVAIDDKVS***************************************************TGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLS************EKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESERQTIQEDEEILYNGMEPFY******************ALAGLVEPL*************************
*************WEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCLNM******************************************************************DPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKENMKWHRTGRRHRKPDTKEISAFYMQSDNEDEEEEDDNRFLQCVTKDIVAIDDKVSDTE**************************************************IEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLRE*********AISFDNAMLESILDDWLVESERQTIQEDEEILYNGMEPF**********************************************L******
********YVDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCLNMRKNLEG******************FHSSDYNDTEDALTGYKHRGKKVMSDKNLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKENMKW*********PDTKEISAFYMQS***********RFLQCVTKDIVAIDDKVSDTEVRYNVK***************RRSRLDSVFLKSLKSQ***********TGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSS*********EMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESERQTIQEDEEILYNGMEPFYGDEIDENENEERRSAEMVALAGLVEPLEVNPAAGGVTTDDDGLDFLDDDLTD
*******GYVDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCLNMRKNLEGCRSGR**************************TGYKHRGKKVMSDKNLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKENMKWHRT****************************************************************************************************GIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESER**********************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPLRSTGYVDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKVPDDVCLNMRKNLEGCRSGRKRSQSENEQASLSFHSSDYNDTEDALTGYKHRGKKVMSDKNLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEDVYLKIKENMKWHRTGRRHRKPDTKEISAFYMQSDNEDEEEEDDNRFLQCVTKDIVAIDDKVSDTEVRYNVKGRSPSSSGNGTEPPVRRSRLDSVFLKSLKSQTSPYSGHVKAKTGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESERQTIQEDEEILYNGMEPFYGDEIDENENEERRSAEMVALAGLVEPLEVNPAAGGVTTDDDGLDFLDDDLTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query897
297736810906 unnamed protein product [Vitis vinifera] 0.995 0.985 0.705 0.0
225432175902 PREDICTED: uncharacterized protein LOC10 0.995 0.990 0.705 0.0
449459864 1018 PREDICTED: uncharacterized protein LOC10 0.982 0.865 0.634 0.0
307136199900 DNA binding protein [Cucumis melo subsp. 0.993 0.99 0.623 0.0
356556462900 PREDICTED: uncharacterized protein LOC10 0.989 0.986 0.638 0.0
255556576906 DNA binding protein, putative [Ricinus c 0.991 0.981 0.626 0.0
356530495902 PREDICTED: uncharacterized protein LOC10 0.987 0.982 0.643 0.0
357450325901 hypothetical protein MTR_2g045480 [Medic 0.993 0.988 0.613 0.0
147799625706 hypothetical protein VITISV_033845 [Viti 0.781 0.992 0.721 0.0
15229049877 hAT dimerization domain-containing prote 0.905 0.925 0.551 0.0
>gi|297736810|emb|CBI26011.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1311 bits (3393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/906 (70%), Positives = 756/906 (83%), Gaps = 13/906 (1%)

Query: 1   MAPLRSTGYVDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKV 60
           M  LRS GY DPGWEHGIAQDERKKKVKCNYCGKIVSGGI+RLKQHLAR+SGEVT+C+K 
Sbjct: 5   MTSLRSPGYSDPGWEHGIAQDERKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCDKA 64

Query: 61  PDDVCLNMRKNLEGCRSGRKRSQSENE-QASLSFHSSDYNDTEDALTGYKHRGKKVMSDK 119
           P++V L MR+NLEGCRS +K  QSE++    L+FH +D  + E+   GY+ +GK++MSD+
Sbjct: 65  PEEVYLKMRENLEGCRSNKKPRQSEDDGHTYLNFHQNDDEEEEEEHAGYRSKGKQLMSDR 124

Query: 120 NLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVA 179
           NLVI  APLRSLGY+DPGWEH VAQDE+KK+VKCNYCEKI+SGGINRFKQHLARIPGEVA
Sbjct: 125 NLVINLAPLRSLGYVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVA 184

Query: 180 YCDKAPEDVYLKIKENMKWHRTGRRHRKPDTKEISAFYMQSDNEDEEEEDDNRFLQCVTK 239
            C  APE+VYLKIKENMKWHRTGRRHR+PD KEISAFYM SDN+DEE+E D   L  + K
Sbjct: 185 PCKNAPEEVYLKIKENMKWHRTGRRHRRPDAKEISAFYMNSDNDDEEDEQDEDALHRMNK 244

Query: 240 DIVAIDDKVSDTEVRYNVKGRSPSSSGNGTEPPVRRSRLDSVFLKSLKSQTSPYSGHVKA 299
           + + I +K    ++R   +G SP   G+G+EP +RRSRLDSV  K+ KSQ +     VK 
Sbjct: 245 ENLIIGEKRLSKDLRKTFRGISP---GSGSEPSLRRSRLDSVVPKTPKSQKALSYKQVKV 301

Query: 300 KTGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPSSRLISGR 359
           KTG  KK RKEVISAICKFFYHAG+P +AANSPYFH MLELVGQYGQGL GP ++LISGR
Sbjct: 302 KTGSSKKTRKEVISAICKFFYHAGVPLHAANSPYFHKMLELVGQYGQGLVGPPTQLISGR 361

Query: 360 FLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDAT 419
           FLQ+EIATIK  LAE KASW+ITGCS+ AD W D QGRTLIN LVSCP G+YF+SS+DAT
Sbjct: 362 FLQEEIATIKNYLAEYKASWAITGCSIKADSWRDAQGRTLINILVSCPHGIYFVSSVDAT 421

Query: 420 DSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCI 479
           D ++DA N+FKLLDKVVEE+GEENVVQVIT+NT S+KAAGKMLEEKRR+LFWTPCA  CI
Sbjct: 422 DIVDDATNLFKLLDKVVEEMGEENVVQVITENTPSYKAAGKMLEEKRRSLFWTPCAAYCI 481

Query: 480 DRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFN 539
           D+ML+D + IK VGEC++K +K+T+FIYN  WLLN+MKKEFT+GQELLRPA ++ A+SF 
Sbjct: 482 DQMLEDFIGIKLVGECMEKGQKITKFIYNRIWLLNLMKKEFTQGQELLRPAVSRCASSFA 541

Query: 540 TLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQ 599
           TLQSLLD RIGLKRLFQSNKWLSSRFSKS++GKE+EKIVLN TFWKK+QYV+KS+ P+VQ
Sbjct: 542 TLQSLLDHRIGLKRLFQSNKWLSSRFSKSEKGKEVEKIVLNATFWKKVQYVRKSVDPLVQ 601

Query: 600 VLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNSLFHHPLHVA 659
           VLQK+DS ES S+  +YNDMYRAKLAI++ HGDDARKYGPFW+VID+ W+SLFHHPL++A
Sbjct: 602 VLQKVDSVESLSMPSIYNDMYRAKLAIRSTHGDDARKYGPFWAVIDNHWSSLFHHPLYMA 661

Query: 660 AYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLA 719
           AYFLNPSYRYR DF++HPE++RGLNECIVRLE DN +RISASMQI DF SA+ADFGT+LA
Sbjct: 662 AYFLNPSYRYRSDFLVHPEVVRGLNECIVRLEPDNMRRISASMQISDFNSAKADFGTELA 721

Query: 720 ISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSR 779
           ISTR+ELDPAAWWQQHGI+CLELQRIA+RILSQTCSS GCEH WSTYDQ+H    N L++
Sbjct: 722 ISTRTELDPAAWWQQHGINCLELQRIAVRILSQTCSSFGCEHNWSTYDQIHRESHNRLAQ 781

Query: 780 KRWNDLTYVHYNLRLRECQLGRKSDDAISFDNAMLESILDDWLVESERQTIQEDEEILYN 839
           KR NDL YVHYNLRLRE QL ++S+D +S D+ +LES+LDDW+VE+E  T+QEDEEI YN
Sbjct: 782 KRLNDLIYVHYNLRLRERQLSKRSNDVMSLDSILLESLLDDWIVEAENPTVQEDEEIPYN 841

Query: 840 GMEPFYGDEIDENENEE------RRSAEMVALAGLVEPLE-VNPAAGGVTTDDDG-LDFL 891
            M+     E D  E E+      + S EMV L+  VEPL+ VNPA+ GV TDDD  L+FL
Sbjct: 842 EMDHTDAYENDLMEYEDGTADGRKASLEMVTLSS-VEPLDIVNPASAGVATDDDTDLNFL 900

Query: 892 DDDLTD 897
            DDL+D
Sbjct: 901 GDDLSD 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432175|ref|XP_002274968.1| PREDICTED: uncharacterized protein LOC100247647 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459864|ref|XP_004147666.1| PREDICTED: uncharacterized protein LOC101213851 [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136199|gb|ADN34037.1| DNA binding protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|356556462|ref|XP_003546544.1| PREDICTED: uncharacterized protein LOC100784818 [Glycine max] Back     alignment and taxonomy information
>gi|255556576|ref|XP_002519322.1| DNA binding protein, putative [Ricinus communis] gi|223541637|gb|EEF43186.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356530495|ref|XP_003533816.1| PREDICTED: uncharacterized protein LOC100814604 [Glycine max] Back     alignment and taxonomy information
>gi|357450325|ref|XP_003595439.1| hypothetical protein MTR_2g045480 [Medicago truncatula] gi|355484487|gb|AES65690.1| hypothetical protein MTR_2g045480 [Medicago truncatula] Back     alignment and taxonomy information
>gi|147799625|emb|CAN75144.1| hypothetical protein VITISV_033845 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15229049|ref|NP_188371.1| hAT dimerization domain-containing protein [Arabidopsis thaliana] gi|110737506|dbj|BAF00695.1| hypothetical protein [Arabidopsis thaliana] gi|332642434|gb|AEE75955.1| hAT dimerization domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query897
TAIR|locus:2093606877 AT3G17450 [Arabidopsis thalian 0.910 0.931 0.551 3.4e-251
TAIR|locus:2090429761 AT3G22220 [Arabidopsis thalian 0.751 0.885 0.315 1e-93
TAIR|locus:2129600768 AT4G15020 [Arabidopsis thalian 0.779 0.910 0.308 3e-92
TAIR|locus:2017864651 AT1G79740 [Arabidopsis thalian 0.556 0.766 0.316 2.1e-86
TAIR|locus:2089240605 AT3G13020 [Arabidopsis thalian 0.565 0.838 0.288 8.5e-77
TAIR|locus:2089250544 AT3G13030 [Arabidopsis thalian 0.539 0.889 0.277 1.9e-60
TAIR|locus:2089230572 AT3G13010 [Arabidopsis thalian 0.520 0.816 0.281 5.5e-56
TAIR|locus:504955161 509 AT5G33406 "AT5G33406" [Arabido 0.352 0.620 0.327 1.5e-47
TAIR|locus:2018655294 AT1G43260 "AT1G43260" [Arabido 0.275 0.840 0.337 7.7e-36
TAIR|locus:504955173433 AT5G31412 [Arabidopsis thalian 0.130 0.270 0.386 1e-32
TAIR|locus:2093606 AT3G17450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2419 (856.6 bits), Expect = 3.4e-251, P = 3.4e-251
 Identities = 470/852 (55%), Positives = 619/852 (72%)

Query:     1 MAPLRSTGYVDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCEKV 60
             MAP  S G VDPGWEHG+AQD+RKKKVKCNYCGKIVSGGI+RLKQHLAR+SGEVT+C+K 
Sbjct:     1 MAPPGSIGVVDPGWEHGVAQDQRKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCDKS 60

Query:    61 PDDVCLNMRKNLEGCRSGRKRSQSENE--QASLSFHSSDYNDTEDA----LTGYKHRGKK 114
             P++VC+ M++NL   RS +K  QSE+   Q+  SFH S+ +D  D         + +GK 
Sbjct:    61 PEEVCMRMKENL--VRSTKKLRQSEDNSGQSCSSFHQSNNDDEADEEERRCWSIRSKGKL 118

Query:   115 VMSDKNLVIRFAPLRSLGYMDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARI 174
              +SD +L      LRS GY+DPGWEH +AQDE+KK+VKCNYC KI+SGGINRFKQHLARI
Sbjct:   119 GLSDGSL------LRSSGYIDPGWEHGIAQDERKKKVKCNYCNKIVSGGINRFKQHLARI 172

Query:   175 PGEVAYCDKAPEDVYLKIKENMKWHRTGRRHRKPDTKEISA--FYMQSXXXXXXXXXXXR 232
             PGEVA C  APE+VY+KIKENMKWHR G+R  +PD  E+ A  F   S            
Sbjct:   173 PGEVAPCKTAPEEVYVKIKENMKWHRAGKRQNRPDD-EMGALTFRTVSQDPDQEEDREDH 231

Query:   233 FLQCVTKDIVAIDDKVSDTEVRYNVKGRSPSSSGNGTEPPVRRSRLDSVFLKSLKSQTSP 292
                  ++D + + +     + R   K    ++  + +E   +R+R+      S   Q   
Sbjct:   232 DFYPTSQDRLMLGNGRFSKDKR---KSFDSTNMRSVSEAKTKRARMIPFQSPSSSKQRKL 288

Query:   293 YSGHVKAKTGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQGPS 352
             YS             RK+V S+I KF +H G+P+ AANS YF  M+EL+G YG+G   PS
Sbjct:   289 YSSCSNRVVS-----RKDVTSSISKFLHHVGVPTEAANSLYFQKMIELIGMYGEGFVVPS 343

Query:   353 SRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYF 412
             S+L SGR LQ+E++TIK  L E ++SW +TGCS+MAD W + +G+ +I+FLVSCPRG+YF
Sbjct:   344 SQLFSGRLLQEEMSTIKSYLREYRSSWVVTGCSIMADTWTNTEGKKMISFLVSCPRGVYF 403

Query:   413 ISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWT 472
              SS+DATD +EDA ++FK LDK+V++IGEENVVQVIT+NTA F++AGK+LEEKR+NL+WT
Sbjct:   404 HSSIDATDIVEDALSLFKCLDKLVDDIGEENVVQVITQNTAIFRSAGKLLEEKRKNLYWT 463

Query:   473 PCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATT 532
             PCA+ C + +L+D   +++V ECL+KA+++TRFIYN TWLLN+MK EFT+G +LLRPA  
Sbjct:   464 PCAIHCTELVLEDFSKLEFVSECLEKAQRITRFIYNQTWLLNLMKNEFTQGLDLLRPAVM 523

Query:   533 KFATSFNTLQSLLDQRIGLKRLFQSNKW-LSSRFSKSDEGKEMEKIVLNLTFWKKMQYVK 591
             + A+ F TLQSL+D +  L+ LFQS+ W LS   +KS+EG+E+EK+VL+  FWKK+QYV 
Sbjct:   524 RHASGFTTLQSLMDHKASLRGLFQSDGWILSQTAAKSEEGREVEKMVLSAVFWKKVQYVL 583

Query:   592 KSLGPIVQVLQKI-DSTESRSISFLYNDMYRAKLAIKAIHGDDARKYGPFWSVIDSQWNS 650
             KS+ P++QV+  I D  +  S+ + Y  M  AK+AIK+IH DDARKYGPFW VI+ +WN 
Sbjct:   584 KSVDPVMQVIHMINDGGDRLSMPYAYGYMCCAKMAIKSIHSDDARKYGPFWRVIEYRWNP 643

Query:   651 LFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSA 710
             LFHHPL+VAAYF NP+Y+YRPDF+   E++RG+NECIVRLE DN +RI+A MQIPD+  A
Sbjct:   644 LFHHPLYVAAYFFNPAYKYRPDFMAQSEVVRGVNECIVRLEPDNTRRITALMQIPDYTCA 703

Query:   711 RADFGTDLAISTRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVH 770
             +ADFGTD+AI TR+ELDP+AWWQQHGISCLELQR+A+RILS TCSSVGCE  WS YDQV+
Sbjct:   704 KADFGTDIAIGTRTELDPSAWWQQHGISCLELQRVAVRILSHTCSSVGCEPKWSVYDQVN 763

Query:   771 SRRRNCLSRKRWNDLTYVHYNLRLRECQLGRK---SDDAI-SFDNAMLESILDDWLVESE 826
             S+ ++   +K   DLTYVHYNLRLRE QL ++    D+   + ++A+L+ +L DWLV SE
Sbjct:   764 SQCQSQFGKKSTKDLTYVHYNLRLREKQLKQRLHYEDEPPPTLNHALLDRLLPDWLVTSE 823

Query:   827 RQTIQEDEEILY 838
             +    E+EE L+
Sbjct:   824 K----EEEEALH 831
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0046983 "protein dimerization activity" evidence=IEA
TAIR|locus:2090429 AT3G22220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129600 AT4G15020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017864 AT1G79740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089240 AT3G13020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089250 AT3G13030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089230 AT3G13010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955161 AT5G33406 "AT5G33406" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018655 AT1G43260 "AT1G43260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955173 AT5G31412 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G17450
hAT dimerisation domain-containing protein; hAT dimerisation domain-containing protein; FUNCTIONS IN- protein dimerization activity, DNA binding; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- HAT dimerisation (InterPro-IPR008906), Zinc finger, BED-type predicted (InterPro-IPR003656), Protein of unknown function DUF659 (InterPro-IPR007021), Protein of unknown function DUF1544 (InterPro-IPR011523); BEST Arabidopsis thaliana protein match is- DNA binding / [...] (877 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query897
pfam04937153 pfam04937, DUF659, Protein of unknown function (DU 4e-70
pfam0569982 pfam05699, Dimer_Tnp_hAT, hAT family dimerisation 1e-11
pfam0289243 pfam02892, zf-BED, BED zinc finger 2e-10
pfam0289243 pfam02892, zf-BED, BED zinc finger 7e-09
>gnl|CDD|203127 pfam04937, DUF659, Protein of unknown function (DUF 659) Back     alignment and domain information 
 Score =  228 bits (583), Expect = 4e-70
 Identities = 82/153 (53%), Positives = 113/153 (73%)

Query: 351 PSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGL 410
           PS   + G  LQ+E + I++ L E+K SW  TGCS++AD W+D +GR LINFLV CP G 
Sbjct: 1   PSYEDLRGTLLQEEKSEIQDYLRELKKSWKTTGCSILADGWSDNKGRPLINFLVYCPAGP 60

Query: 411 YFISSMDATDSIEDAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLF 470
            F+ S+DA+D  +DA  +F+LLD VVEE+G ENVVQVIT NT +++AAGK+LE+K  ++F
Sbjct: 61  VFLKSVDASDIKKDADYLFELLDSVVEEVGVENVVQVITDNTPNYRAAGKLLEQKYPSIF 120

Query: 471 WTPCAVDCIDRMLDDILNIKWVGECLDKAKKLT 503
           WTPCA  CI+ ML+DI  + WV E ++KA+ +T
Sbjct: 121 WTPCAAHCINLMLEDIGKLDWVSEIIEKAQTIT 153

Transposase-like protein with no known function. Length = 153
>gnl|CDD|218702 pfam05699, Dimer_Tnp_hAT, hAT family dimerisation domain Back     alignment and domain information
>gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger Back     alignment and domain information
>gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 897
PF04937153 DUF659: Protein of unknown function (DUF 659); Int 100.0
KOG1121641 consensus Tam3-transposase (Ac family) [Replicatio 100.0
PF0569986 Dimer_Tnp_hAT: hAT family C-terminal dimerisation 99.54
PF14291235 DUF4371: Domain of unknown function (DUF4371) 99.27
PF0289245 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc 98.37
PF0289245 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc 97.89
smart0061450 ZnF_BED BED zinc finger. DNA-binding domain in chr 97.21
PF14372101 DUF4413: Domain of unknown function (DUF4413) 96.62
PF1068368 DBD_Tnp_Hermes: Hermes transposase DNA-binding dom 95.48
smart0061450 ZnF_BED BED zinc finger. DNA-binding domain in chr 90.34
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function Back     alignment and domain information 
Probab=100.00  E-value=1.6e-35  Score=286.33  Aligned_cols=153  Identities=50%  Similarity=0.929  Sum_probs=150.7

Q ss_pred             CchhhhhhhHHHHHHHHHHHHHHHHHhhccccceEEEeeccccCCCCeEEEEEEEcCCceEEeeeeccCCCcccHHHHHH
Q 044693          351 PSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGLYFISSMDATDSIEDAANIFK  430 (897)
Q Consensus       351 PS~~~l~~~lL~~~~~~ik~~l~~~~~~~~~~~~SI~~D~Wtd~~~~~~l~~~v~~~~~~~fl~~vd~s~~~~tae~L~~  430 (897)
                      ||+++|++.+|++.+++++..++.++++|+.+||||++|+|||..++++|||+|+|+.|.+|++++++++..+|+++|++
T Consensus         1 PS~~~Lr~~lL~~~~~~v~~~~~~~k~~w~~~Gcsi~~DgWtd~~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~   80 (153)
T PF04937_consen    1 PSYHELRGPLLDKEYKEVKEQVKEHKKSWKRTGCSIMSDGWTDRKGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFE   80 (153)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEecCcCCCCCeEEEEEEEcccccEEEEEEecccccccHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCccEEEEEecCCccHHHHHHHHHHhcCCeeeeCchhHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 044693          431 LLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLT  503 (897)
Q Consensus       431 ~l~~vl~e~g~~nvv~ivtDnAsnm~~a~~lL~~~~p~i~~~~C~aH~LnLil~d~~k~~~v~~~l~k~~~I~  503 (897)
                      +|+++++++|.+||++|||||++||.+|+++|++++|++||.||+||||||+++|+++++++++++.+|+.|+
T Consensus        81 ll~~vIeeVG~~nVvqVVTDn~~~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~k~~~i~~vi~~ak~it  153 (153)
T PF04937_consen   81 LLDEVIEEVGEENVVQVVTDNASNMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIGKLPWIKEVIEKAKAIT  153 (153)
T ss_pred             HHHHHHHHhhhhhhhHHhccCchhHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHhcChHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999874

>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair] Back     alignment and domain information
>PF05699 Dimer_Tnp_hAT: hAT family C-terminal dimerisation region; InterPro: IPR008906 This dimerisation domain is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily) Back     alignment and domain information
>PF14291 DUF4371: Domain of unknown function (DUF4371) Back     alignment and domain information
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00614 ZnF_BED BED zinc finger Back     alignment and domain information
>PF14372 DUF4413: Domain of unknown function (DUF4413) Back     alignment and domain information
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [] Back     alignment and domain information
>smart00614 ZnF_BED BED zinc finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query897
2bw3_A534 Transposase; DNA recombination, transposition; 2.0 6e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B Length = 534 Back     alignment and structure
 Score =  145 bits (366), Expect = 6e-37
 Identities = 70/551 (12%), Positives = 164/551 (29%), Gaps = 81/551 (14%)

Query: 298 KAKTGIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQGLQG------- 350
           +    +    +KE I    ++      P +A +   F +M++   +              
Sbjct: 6   RELKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEEL 65

Query: 351 -PSSRLISGRFLQDEIATIKENLAEVKASWSITGCSVMADCWNDVQG-RTLINFLVSCPR 408
            PS   +S +   D          E+K++    G S   D W D    R  +   +    
Sbjct: 66  LPSPITLSRKVTSDAKEKKALIGREIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHE 125

Query: 409 GLYFISSMDATDSIE----DAANIFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEE 464
                  +    S++     A NI+K L  +  +   E++  +           G  + +
Sbjct: 126 NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDR-----GANVVK 180

Query: 465 KRRNLFWTPCAVDCIDRMLDDILNIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQ 524
              N     C+   +  +L++             A K     +    L + ++       
Sbjct: 181 SLANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHRLRSS----- 235

Query: 525 ELLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFW 584
            L     T++ +++  L+S+LD    + ++                        +     
Sbjct: 236 -LKSECPTRWNSTYTMLRSILDNWESVIQILSEAGE---------------TQRIVHINK 279

Query: 585 KKMQYVKKSLGPIVQVLQKIDSTESRSISFLYNDMYRAKLAIKAIHGDD---ARKYGPFW 641
             +Q +   L    ++ +++ +  S S+ F+   + + K       GD    A+      
Sbjct: 280 SIIQTMVNILDGFERIFKELQTCSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNII 339

Query: 642 SVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEI--------------IRGLNECI 687
             +   W        + A +F  P+   + + +   +               +   NE  
Sbjct: 340 KNVRIIWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSFNELS 399

Query: 688 VRLEVDNGKRISASMQIPDFVSARADFGTDLAIST------------------------- 722
                 +      S+ +       +         T                         
Sbjct: 400 ATQLNQSDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVIL 459

Query: 723 RSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRW 782
             +     WW  +     +L ++A+ +LS   SS   E T+S    + + +RN + ++  
Sbjct: 460 SEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTV 519

Query: 783 NDLTYVHYNLR 793
           + L +++   +
Sbjct: 520 DSLLFLNSFYK 530
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query897
2bw3_A534 Transposase; DNA recombination, transposition; 2.0 100.0
2djr_A76 Zinc finger BED domain-containing protein 2; C2H2 97.52
2ct5_A73 Zinc finger BED domain containing protein 1; DREF 97.25
2djr_A76 Zinc finger BED domain-containing protein 2; C2H2 91.33
2ct5_A73 Zinc finger BED domain containing protein 1; DREF 87.55
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B Back     alignment and structure
Probab=100.00  E-value=1.4e-57  Score=538.88  Aligned_cols=462  Identities=15%  Similarity=0.223  Sum_probs=356.5

Q ss_pred             cccHHHHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHhcCCC--------CCCCchhhhhhhHHHHHHHHHHHHHH
Q 044693          302 GIEKKIRKEVISAICKFFYHAGIPSNAANSPYFHNMLELVGQYGQG--------LQGPSSRLISGRFLQDEIATIKENLA  373 (897)
Q Consensus       302 ~~~~~~~~~~~~~ia~~i~~~~iPfs~ve~~~F~~ll~~l~~~~~~--------~~~PS~~~l~~~lL~~~~~~ik~~l~  373 (897)
                      +..+.+++.+.++|++||+.+++||+++++|+|++|++.++..||+        +.+||++++++.+++...+..+.+++
T Consensus        10 ~~~~~~~~~~~~~l~~~i~~~~~Pf~~ve~~~F~~~l~~l~~~~p~~~~~~~~~~~~ps~~~~~~~i~~~~~~~~~~l~~   89 (534)
T 2bw3_A           10 TVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITLSRKVTSDAKEKKALIGR   89 (534)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCGGGGGCHHHHHHHHHHHHHHHHHCSCBCHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecChhhHHHHHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHhhhhhhccccchhhcCCCcccHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999999999999755564        36999999999988864444555777


Q ss_pred             HHHhhccccceEEEeeccccC-CCCeEEEEEEEcCCce----EEeeeeccCCCcccHHHHHHHHHHHHHHhCCcc--EEE
Q 044693          374 EVKASWSITGCSVMADCWNDV-QGRTLINFLVSCPRGL----YFISSMDATDSIEDAANIFKLLDKVVEEIGEEN--VVQ  446 (897)
Q Consensus       374 ~~~~~~~~~~~SI~~D~Wtd~-~~~~~l~~~v~~~~~~----~fl~~vd~s~~~~tae~L~~~l~~vl~e~g~~n--vv~  446 (897)
                      +++..|..++|||++|+|||. ++++||+|+||+.++.    .+|+...+....|||++|++.|.++|++||+++  +++
T Consensus        90 ~l~~~~~~~~~sl~~D~wt~~~~~~~~l~i~v~~i~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~  169 (534)
T 2bw3_A           90 EIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIK  169 (534)
T ss_dssp             HHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCE
T ss_pred             HHHhhhcCCceEEEEecccCCCCCcceeEEEEEEeeCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCccccee
Confidence            788777779999999999998 6899999999997543    256666665435999999999999999999865  888


Q ss_pred             EEecCCccHHHHHHHHHHhcCCeeeeCchhHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhhcHHHHHHHHHHhccCcc
Q 044693          447 VITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILN-IKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQE  525 (897)
Q Consensus       447 ivtDnAsnm~~a~~lL~~~~p~i~~~~C~aH~LnLil~d~~k-~~~v~~~l~k~~~I~~fi~~s~~~~~~~~k~~~~~~~  525 (897)
                      ++||||+||.++.+       ..+|++|++|+|||+++++++ ++.+..++.++++|++||++|+.+..       -...
T Consensus       170 ~vtDnasn~~~~~~-------~~~~i~C~~H~lnLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~~~~-------l~~~  235 (534)
T 2bw3_A          170 FVTDRGANVVKSLA-------NNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHR-------LRSS  235 (534)
T ss_dssp             EEECCCHHHHHHTT-------TSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGG-------GCCC
T ss_pred             EECCCHHHHHHHHh-------cCcccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccHhhHh-------cccc
Confidence            99999999988753       247899999999999999776 78899999999999999999875421       1357


Q ss_pred             ccccccccccccHHhHHHHHHHHHHHHHHhhchhhhccccCCCchhhhHHHhhcCHHHHHHHHHHHHHHhhHHHHHHHhh
Q 044693          526 LLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKID  605 (897)
Q Consensus       526 L~~~~~TRW~S~~~~L~~ll~~~~~L~~~~~s~e~~~s~~~~~~~~~~~~~~i~~~~fW~~l~~l~~il~Pl~~~l~~l~  605 (897)
                      |..+++|||+|+|.||+++++++++|..++.+.++.               ..++..+|..+..++.+|+||..+++.++
T Consensus       236 l~~~~~tRW~S~~~~L~~~l~~~~~i~~~~~~~~~~---------------~~~~~~dw~~~~~l~~iL~pf~~~t~~l~  300 (534)
T 2bw3_A          236 LKSECPTRWNSTYTMLRSILDNWESVIQILSEAGET---------------QRIVHINKSIIQTMVNILDGFERIFKELQ  300 (534)
T ss_dssp             CCCSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTCG---------------GGTTTCCHHHHHHHHHHHHTTHHHHHHHT
T ss_pred             cCCCCCCCcHhHHHHHHHHHHHHHHHHHHHHhcccc---------------cCCchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999998654321               12445679999999999999999999999


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHHhCCCc---cccccHHHHHHHHHhhhccchhHHHHhhcCCCcccCC-CCCCCHHHHH
Q 044693          606 STESRSISFLYNDMYRAKLAIKAIHGDDA---RKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRP-DFIMHPEIIR  681 (897)
Q Consensus       606 ~~~~~tis~v~~~m~~lk~~i~~~~~~~~---~~~~~~~~~i~~r~~~~~~~pl~~aa~~LdPr~ky~~-~f~~~~ei~~  681 (897)
                      ++..|+++++|+.|..++..+.....+..   ..+..++..++++|+... +|+|++|++|||||+|.. .+.  .++..
T Consensus       301 ~~~~pt~~~v~~~~~~l~~~l~~~~~~~~~~~~l~~~m~~~l~ky~~~~~-~~~~~~A~~LdPr~~~l~p~~k--~~~~~  377 (534)
T 2bw3_A          301 TCSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENL-SIWHYTAFFFYPPALHMQQEKV--AQIKE  377 (534)
T ss_dssp             CSSSCCGGGHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHHTTGGGC-CHHHHHHHHTSGGGTTSCCSCH--HHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhc-chhhheeeEecccccccCHHHH--HHHHH
Confidence            98889999999999988765532111111   234567788899998865 789999999999998742 221  11111


Q ss_pred             ---------HHHHHHHHh---ccCchhhh------hhh-----c-------CchhHHHhh-cc----CCChHh------h
Q 044693          682 ---------GLNECIVRL---EVDNGKRI------SAS-----M-------QIPDFVSAR-AD----FGTDLA------I  720 (897)
Q Consensus       682 ---------~l~~~i~~l---~~~~~~~~------~~~-----~-------el~~y~~~~-~~----f~~~~a------~  720 (897)
                               .+.+.+..+   .+......      .+.     .       -+..|.... +.    ...++.      .
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~yl~~~~  457 (534)
T 2bw3_A          378 FCLSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIV  457 (534)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSCSSSCCC----------------CCCHHHHHCHHHHHHHHHSCCCCHHHHHHHHHTCCC
T ss_pred             HHhhhhcchHHHHHHHHHHHhhhhhccCCCCcccccccccccccCccchHHHHHHHhhcCCCCCCCChHHHHHHHHcCCC
Confidence                     011111111   11100000      000     0       011111100 00    000110      0


Q ss_pred             hccCCCChhhHHhhcCCChHHHHHHHHHHhccccCCccccccccccchhccccccchhhhhhchhhhhhhhhhhh
Q 044693          721 STRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLRLR  795 (897)
Q Consensus       721 ~~~~~~~Pl~wW~~~~~~~P~L~~lA~~iLsiP~SSa~~ER~FS~~~~I~t~~RnrL~~e~L~~Lv~l~~Nl~L~  795 (897)
                      ......+|+.||+.++..||.|++||++||++|+||++|||+||.++.+++++||+|+++++++|+|+++|+++.
T Consensus       458 ~~~~~~~~l~wW~~~~~~~p~L~~~a~~~l~~p~ss~~~er~fs~~~~~~~~~r~~l~~~~~~~l~~~~~~~~~~  532 (534)
T 2bw3_A          458 ILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYKNF  532 (534)
T ss_dssp             CCCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCChHHHHHhCCccCChHHHHHHHHhcCCcccccccccccccccccCcccccCCHHHHHHHHHHHHHHHHh
Confidence            123467999999999999999999999999999999999999999999999999999999999999999999974
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6 Back     alignment and structure
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 897
d2bw3a2447 c.55.3.12 (A:163-609) Transposase Hermes, catalyti 6e-39
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

 Score =  148 bits (374), Expect = 6e-39
 Identities = 59/472 (12%), Positives = 140/472 (29%), Gaps = 83/472 (17%)

Query: 374 EVKASWSITGCSVMADCWNDVQGRTLINFLVSCPRGL-------YFISSMDATDSIEDAA 426
           E+K++    G S   D W D   +   NFL                +           A 
Sbjct: 3   EIKSAVEKDGASATIDLWTDNYIK--RNFLGVTLHYHENNELRDLILGLKSLDFERSTAE 60

Query: 427 NIFKLLDKVVEEIGEENVVQVI--TKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLD 484
           NI+K L  +  +   E++  +   T   A+   +         N     C+   +  +L+
Sbjct: 61  NIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLA-------NNIRINCSSHLLSNVLE 113

Query: 485 DIL-NIKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQELLRPATTKFATSFNTLQS 543
           +       +   +   K + ++   +     +          L     T++ +++  L+S
Sbjct: 114 NSFEETPELNMPILACKNIVKYFKKANLQHRLRSS-------LKSECPTRWNSTYTMLRS 166

Query: 544 LLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQK 603
           +LD    + ++                        +       +Q +   L    ++ ++
Sbjct: 167 ILDNWESVIQILSEAGETQR---------------IVHINKSIIQTMVNILDGFERIFKE 211

Query: 604 IDSTESRSISFLYNDMYRAKLAIKAIHGDD---ARKYGPFWSVIDSQWNSLFHHPLHVAA 660
           + +  S S+ F+   + + K       GD    A+        +   W        + A 
Sbjct: 212 LQTCSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAF 271

Query: 661 YFLNPSYRYRPDFIMHPEIIRGLNECIVRLEVDNGKRISASMQIPDFVSARADFGTDLAI 720
           +F  P+   + + +   +         + L          S    +   + +    DL  
Sbjct: 272 FFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTS 331

Query: 721 ST---------------------------------------RSELDPAAWWQQHGISCLE 741
            +                                         +     WW  +     +
Sbjct: 332 HSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKKYPK 391

Query: 742 LQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLR 793
           L ++A+ +LS   SS   E T+S    + + +RN + ++  + L +++   +
Sbjct: 392 LSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYK 443

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query897
d2bw3a2447 Transposase Hermes, catalytic domain {House fly (M 100.0
d2bw3a184 Transposase Hermes, dimerisation domain {House fly 97.37
d2ct5a160 Zinc finger BED domain-containing protein 1 {Human 96.07
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

Probab=100.00  E-value=5.7e-43  Score=399.65  Aligned_cols=389  Identities=14%  Similarity=0.222  Sum_probs=287.7

Q ss_pred             HHHhhccccceEEEeeccccCC-CCeEEEEEEEcCCc-e---EEeeeeccCCCcccHHHHHHHHHHHHHHhCC--ccEEE
Q 044693          374 EVKASWSITGCSVMADCWNDVQ-GRTLINFLVSCPRG-L---YFISSMDATDSIEDAANIFKLLDKVVEEIGE--ENVVQ  446 (897)
Q Consensus       374 ~~~~~~~~~~~SI~~D~Wtd~~-~~~~l~~~v~~~~~-~---~fl~~vd~s~~~~tae~L~~~l~~vl~e~g~--~nvv~  446 (897)
                      ++++.|...++||++|+||+.. .++||++++|+.+. .   .+|+...+....|||++|++.|.+++++||+  +++++
T Consensus         3 ~~k~~~~~~~~s~~~D~Wts~~~~~~~l~v~~~yi~~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~   82 (447)
T d2bw3a2           3 EIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIK   82 (447)
T ss_dssp             HHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCE
T ss_pred             hHHHHHHcCCEEEEEEeecCCCCCeEEEEEEEEEEECCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEE
Confidence            3445555889999999999864 56999999988653 2   4777777765669999999999999999997  48999


Q ss_pred             EEecCCccHHHHHHHHHHhcCCeeeeCchhHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhhcHHHHHHHHHHhccCcc
Q 044693          447 VITKNTASFKAAGKMLEEKRRNLFWTPCAVDCIDRMLDDILN-IKWVGECLDKAKKLTRFIYNSTWLLNVMKKEFTKGQE  525 (897)
Q Consensus       447 ivtDnAsnm~~a~~lL~~~~p~i~~~~C~aH~LnLil~d~~k-~~~v~~~l~k~~~I~~fi~~s~~~~~~~~k~~~~~~~  525 (897)
                      ++||||+||.++       .+.+.++||++|+|||+++++++ ++.+..++.++++++.||.+++.+..       ....
T Consensus        83 ~~~D~a~n~~~~-------~~~~~~i~C~aH~Lnl~v~d~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-------~~~~  148 (447)
T d2bw3a2          83 FVTDRGANVVKS-------LANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHR-------LRSS  148 (447)
T ss_dssp             EEECCCHHHHHH-------TTTSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGG-------GCCC
T ss_pred             EEcCCcHhhHHH-------hhccccccchhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH-------Hhcc
Confidence            999999999875       46788899999999999999986 78899999999999999998865432       2346


Q ss_pred             ccccccccccccHHhHHHHHHHHHHHHHHhhchhhhccccCCCchhhhHHHhhcCHHHHHHHHHHHHHHhhHHHHHHHhh
Q 044693          526 LLRPATTKFATSFNTLQSLLDQRIGLKRLFQSNKWLSSRFSKSDEGKEMEKIVLNLTFWKKMQYVKKSLGPIVQVLQKID  605 (897)
Q Consensus       526 L~~~~~TRW~S~~~~L~~ll~~~~~L~~~~~s~e~~~s~~~~~~~~~~~~~~i~~~~fW~~l~~l~~il~Pl~~~l~~l~  605 (897)
                      |..+++|||.|++.||.+++++++.|..++.....               ...+...+|..+..+..++.|+..++..++
T Consensus       149 l~~~~~trW~s~~~~l~~~~~~~~~i~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  213 (447)
T d2bw3a2         149 LKSECPTRWNSTYTMLRSILDNWESVIQILSEAGE---------------TQRIVHINKSIIQTMVNILDGFERIFKELQ  213 (447)
T ss_dssp             CCCSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTC---------------GGGTTTCCHHHHHHHHHHHHTTHHHHHHHT
T ss_pred             cCCCCccchhhHHHHHHHHHHHHHHHHHHHHhccc---------------cccCChHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999999999999999999998754321               113456689999999999999999999999


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHHhCCCc---cccccHHHHHHHHHhhhccchhHHHHhhcCCCcccCCCCCCCHHHHHH
Q 044693          606 STESRSISFLYNDMYRAKLAIKAIHGDDA---RKYGPFWSVIDSQWNSLFHHPLHVAAYFLNPSYRYRPDFIMHPEIIRG  682 (897)
Q Consensus       606 ~~~~~tis~v~~~m~~lk~~i~~~~~~~~---~~~~~~~~~i~~r~~~~~~~pl~~aa~~LdPr~ky~~~f~~~~ei~~~  682 (897)
                      ....++++.+++.+..+...+.....+..   .....++..++++|+... ...+.+|.+|+|++.+... .........
T Consensus       214 ~~~~~t~~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~l~p~~~~~~~-~~~~~~~~~  291 (447)
T d2bw3a2         214 TCSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENL-SIWHYTAFFFYPPALHMQQ-EKVAQIKEF  291 (447)
T ss_dssp             CSSSCCGGGHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHHTTGGGC-CHHHHHHHHTSGGGTTSCC-SCHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCcccchhh-hHHHHHHHH
Confidence            98889999999999877655443222211   123345567788887764 4566788899999876532 221111111


Q ss_pred             HHHHHHHh---------cc---Cchh--hhhhhcC----------------chhHHHh-hc-cCC---ChHh------hh
Q 044693          683 LNECIVRL---------EV---DNGK--RISASMQ----------------IPDFVSA-RA-DFG---TDLA------IS  721 (897)
Q Consensus       683 l~~~i~~l---------~~---~~~~--~~~~~~e----------------l~~y~~~-~~-~f~---~~~a------~~  721 (897)
                      ....+..+         ..   ....  .......                +..+... .. ...   .++.      ..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~yl~~~~~  371 (447)
T d2bw3a2         292 CLSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVI  371 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCSSSCCC----------------CCCHHHHHCHHHHHHHHHSCCCCHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccchhHHhhhhcccccccccHHHHHHHhcCccc
Confidence            11111110         00   0000  0000000                0000000 00 000   0000      01


Q ss_pred             ccCCCChhhHHhhcCCChHHHHHHHHHHhccccCCccccccccccchhccccccchhhhhhchhhhhhhhhh
Q 044693          722 TRSELDPAAWWQQHGISCLELQRIAIRILSQTCSSVGCEHTWSTYDQVHSRRRNCLSRKRWNDLTYVHYNLR  793 (897)
Q Consensus       722 ~~~~~~Pl~wW~~~~~~~P~L~~lA~~iLsiP~SSa~~ER~FS~~~~I~t~~RnrL~~e~L~~Lv~l~~Nl~  793 (897)
                      .....+|++||..+...||.|+++|+++|++|+|||.|||+||+++.|+|++||+|+++++++|+||+.|+|
T Consensus       372 ~~~~~~~l~~W~~~~~~yP~L~~lA~~~Lsip~tsa~~ER~FS~~~~i~t~~R~~L~~e~le~L~~l~~~~k  443 (447)
T d2bw3a2         372 LSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYK  443 (447)
T ss_dssp             CCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHCCcccHHHHHHHHHHhCCCCcccHHHHHHhccccccCcccCCCCHHHHHHHHHHHHHhh
Confidence            234679999999999999999999999999999999999999999999999999999999999999999997
>d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation domain {House fly (Musca domestica) [TaxId: 7370]} Back     information, alignment and structure
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure