Citrus Sinensis ID: 044703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYKNALR
Secondary Structure (PSIPRED)
cccEEEEEEEEEcccHHHHHHHHHHccccccccccccccccEEEEccccccccEEEEEEEccccEEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEEEccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccHHHHHHHHcccHHHHHHHHccccccEEEEEEcccccccEEEEEccccccccEEEEEEEEEEccccEEEEEEEEEccEcccEEEEEEEEEEEEcccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEHHHHcc
Coil and Loop (DISEMBL)
mgvftvtdeytspispaRLFKALIVDSHNLIPKLMPQAVKSIEIfegdggagsiRQINVVegnqvkcsknrvdaldlenfsykysliEGDVLMDKLEKISYdvkfeptadggskntmtstyytkgnivlTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYKNALR
Flexible Loop (DISEMBL)
mgvftvtdeytspispARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINvvegnqvkcsknrvDALDLENFSYKYSLIEGDVLMDKLEKISYDVKfeptadggskntmtstyytkgnivlteeeikegkeKSLAMYKVVENYLMQNPEEYASLefssliknkyVYKNALR
Low Complexity Region (SEG)
MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYKNALR
Disordered region (IsUnstruct)
****TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPT********MTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYK****
Disordered Region (DISOPRED)
*GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYKN*L*
Disordered Region (DISEMBL)
********EYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYKNALR
Disordered Region (DISPRO)
*GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYK***R
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKYVYKNALR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
O50001	160	Major allergen Pru ar 1 O	N/A	no	0.888	0.993	0.522	5e-44
O24248	160	Major allergen Pru av 1 O	N/A	no	0.888	0.993	0.515	2e-43
P43211	159	Major allergen Mal d 1 OS	N/A	no	0.882	0.993	0.484	1e-40
Q40280	159	Major allergen Mal d 1 OS	N/A	no	0.882	0.993	0.477	3e-40
O65200	159	Major allergen Pyr c 1 OS	N/A	no	0.882	0.993	0.477	4e-40
P17642	155	Pathogenesis-related prot	N/A	no	0.865	1.0	0.537	8e-40
P17641	155	Pathogenesis-related prot	N/A	no	0.865	1.0	0.525	1e-38
Q43560	157	Class-10 pathogenesis-rel	N/A	no	0.871	0.993	0.477	3e-37
P43186	160	Major pollen allergen Bet	N/A	no	0.888	0.993	0.477	1e-34
P38950	160	Major pollen allergen Car	N/A	no	0.888	0.993	0.471	4e-34

>sp|O50001|PRU1_PRUAR Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1

 Score =  177 bits (448), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 113/159 (71%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVFT   E+TS I P +LFKA I+D+ NLIPK+ P AVK  EI EGDGG G+I+++   
Sbjct: 1   MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFG 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+Q    K+RVD +D +N SY Y+LIEGD L D +E I+YD+K   + DGGS    TS 
Sbjct: 61  EGSQYAYVKHRVDGIDKDNLSYSYTLIEGDALSDVIENIAYDIKLVASPDGGSIVKTTSH 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG++ + EE++K GKEK+  ++K+VE YL+ NP+ Y
Sbjct: 121 YHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDAY 159

Prunus armeniaca (taxid: 36596)

>sp|O24248|PRU1_PRUAV Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 113/159 (71%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVFT   E+TS I P RLFKA ++D+ NL+PK+ PQA+K  EI EGDGG G+I++I   
Sbjct: 1   MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+Q    K+++D++D EN+SY Y+LIEGD L D LEKISY+ K   +  GGS    TS 
Sbjct: 61  EGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSH 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKGN+ + EE +K GKEK+  ++K++E YL  +P+ Y
Sbjct: 121 YHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 159

Prunus avium (taxid: 42229)

>sp|P43211|MAL11_MALDO Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 114/159 (71%), Gaps = 1/159 (0%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV+T  +E+TS I P+RLFKA ++D+ NLIPK+ PQA+K  EI EG+GG G+I++I   
Sbjct: 1   MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFG 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+Q    K+R+D++D  ++SY Y+LIEGD L D +EKISY+ K      G +  ++ S 
Sbjct: 61  EGSQYGYVKHRIDSIDEASYSYSYTLIEGDALTDTIEKISYETKLVACGSGSTIKSI-SH 119

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKGNI + EE +K GKEK+  ++K++E+YL  +P+ Y
Sbjct: 120 YHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDAY 158

Malus domestica (taxid: 3750)

>sp|Q40280|MAL12_MALDO Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV+T  +EYTS I P RLFKA ++D+ NLIPK+ PQA+K  EI EGDGG G+I++I   
Sbjct: 1   MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFG 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+Q    K+++D++D  N+SY Y+LIEGD L D +EK+SY+ K   +  G    ++ S 
Sbjct: 61  EGSQYGYVKHKIDSVDEANYSYAYTLIEGDALTDTIEKVSYETKLVASGSGSIIKSI-SH 119

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG++ + EE +K GKEK+  ++K++E+YL  +P+ Y
Sbjct: 120 YHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDAY 158

Malus domestica (taxid: 3750)

>sp|O65200|PYRC1_PYRCO Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1

 Score =  164 bits (414), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 114/159 (71%), Gaps = 1/159 (0%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MG++T  +E+TS I P RLFKA ++D+ NLIPK+ PQA+K  EI EG+GG G+I++I   
Sbjct: 1   MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFG 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+Q    K+RVD++D  ++SY Y+LIEGD L D +EKISY+ K   +  G +  ++ S 
Sbjct: 61  EGSQYGYVKHRVDSIDEASYSYAYTLIEGDALTDTIEKISYEAKLVASGSGSTIKSI-SH 119

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG+I + EE +K GKEK+  ++K++E+YL  +P+ Y
Sbjct: 120 YHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDAY 158

Pyrus communis (taxid: 23211)

>sp|P17642|PRS2_SOLTU Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 116/160 (72%), Gaps = 5/160 (3%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV + T E T+PI+P RLFKAL+VDS NLIPKLMPQ VK+IE  EGDG   SI+++N V
Sbjct: 1   MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQ-VKNIEA-EGDG---SIKKMNFV 55

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+ +K  K+++  +D +N   KYS+IEGDVL DKLE ISYD+KFE   +GG      + 
Sbjct: 56  EGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSITE 115

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y+TKG+ VL +EE  EG+++ + ++K+VE YL+ NP  YA
Sbjct: 116 YHTKGDYVLKDEEHNEGQKQGMELFKIVEAYLLANPSVYA 155

Solanum tuberosum (taxid: 4113)

>sp|P17641|PRS1_SOLTU Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 115/160 (71%), Gaps = 5/160 (3%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV + T E T+P++P RLFKAL+VDS NLIPKLMPQ VK+IE  EGDG   SI+++  V
Sbjct: 1   MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQ-VKNIEA-EGDG---SIKKMTFV 55

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+ +K  K+++  +D +N   KYS+IEGDVL DKLE ISYD+KFE   +GG      + 
Sbjct: 56  EGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSIAE 115

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y+TKG+ VL +E+  EGK++ + ++K+VE YL+ NP  YA
Sbjct: 116 YHTKGDYVLKDEDHNEGKKQGMELFKIVEAYLLANPSVYA 155

Solanum tuberosum (taxid: 4113)

>sp|Q43560|PR1_MEDSA Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVF   DE TS ++PARL+KAL+ DS NLIPK++  A++SIEI EG+GGAG+I+++  V
Sbjct: 1   MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVI-DAIQSIEIVEGNGGAGTIKKLTFV 59

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG + K   ++VD +D  NF+Y YS++ G  L D +EKIS++ K     DGGS   +T  
Sbjct: 60  EGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSTAKLTVK 119

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
           Y+TKG+   +EEEIK GK +   ++K +E Y++ NP+
Sbjct: 120 YFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPD 156

Medicago sativa (taxid: 3879)

>sp|P43186|BEV1M_BETPN Major pollen allergen Bet v 1-M/N OS=Betula pendula GN=BETV1M PE=1 SV=2

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 102/159 (64%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVF    E TS I  ARLFKA I+D  NLIPK+ PQA+ S+E  EG+GG G+I++I   
Sbjct: 1   MGVFNYESETTSVIPAARLFKAFILDGDNLIPKVAPQAISSVENIEGNGGPGTIKKITFP 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+  K  K RVD +D  NF Y YS+IEG  L D LEKI  ++K   T DGGS   +++ 
Sbjct: 61  EGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNK 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG+  +  E +K  KEK  A+ + VE+YL+ + + Y
Sbjct: 121 YHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDAY 159

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P38950|MPAC2_CARBE Major pollen allergen Car b 1 isoform 2 OS=Carpinus betulus PE=1 SV=2

 Score =  144 bits (362), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 104/159 (65%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVF    E TS I  ARLFKA I+D + LIPK+ PQAV S+E  EG+GG G+I++I   
Sbjct: 1   MGVFNYEAETTSVIPAARLFKAFILDGNKLIPKVSPQAVSSVENVEGNGGPGTIKKITFS 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+ VK  K RV+ +D  NF Y Y++IEGDVL DKLEK+S+++K      GGS   ++S 
Sbjct: 61  EGSPVKYVKERVEEIDHTNFKYNYTVIEGDVLGDKLEKVSHELKIVAAPGGGSIVKISSK 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           ++ KG   +  EE+K  KE +  + + VE+YL+ +  EY
Sbjct: 121 FHAKGYHEVNAEEMKGAKEMAEKLLRAVESYLLAHTAEY 159

Carpinus betulus (taxid: 12990)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
356556072	160	PREDICTED: major allergen Pru ar 1-like	0.893	1.0	0.618	2e-52
224110238	160	predicted protein [Populus trichocarpa]	0.888	0.993	0.654	1e-48
224106956	160	predicted protein [Populus trichocarpa]	0.893	1.0	0.637	5e-48
224130342	160	predicted protein [Populus trichocarpa]	0.893	1.0	0.568	4e-47
190613889	160	putative allergen Pru p 1.05 [Prunus dul	0.888	0.993	0.553	1e-46
190613887	160	putative allergen Pru du 1.05 [Prunus du	0.888	0.993	0.553	5e-46
359477159	159	PREDICTED: pathogenesis-related protein	0.888	1.0	0.55	6e-46
313184281	146	putative Mal d 1.12 isoallergen [Malus x	0.810	0.993	0.590	1e-45
357478849	160	Pathogenesis-related protein [Medicago t	0.893	1.0	0.562	1e-45
388501186	160	unknown [Lotus japonicus]	0.893	1.0	0.556	1e-45

>gi|356556072|ref|XP_003546351.1| PREDICTED: major allergen Pru ar 1-like [Glycine max]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/160 (61%), Positives = 126/160 (78%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV++ TDEY SPISP+RLFKAL+VD+HNLIPKL+P +VKSIEI +GDGGAGSI+Q N V
Sbjct: 1   MGVYSDTDEYPSPISPSRLFKALVVDAHNLIPKLLPNSVKSIEIIQGDGGAGSIKQFNFV 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EGNQVK  KNR+D +D E  +Y Y+LIEG+ L DK   I++++KFE   DGGS + +TS 
Sbjct: 61  EGNQVKNIKNRIDEIDEETLTYNYTLIEGEALKDKFASIAHEIKFEAAPDGGSISKVTSK 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           YY KG++ + EE+IK  KE  L +YKVVE YL+QNP+ YA
Sbjct: 121 YYLKGDVEINEEDIKASKEIVLGIYKVVEAYLLQNPDVYA 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110238|ref|XP_002315457.1| predicted protein [Populus trichocarpa] gi|222864497|gb|EEF01628.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 129/159 (81%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVF  +DE+TSP+ PARLFKALI+DS NL+PKL+PQ +KS+E  +G+G AGSIRQI+  
Sbjct: 1   MGVFAFSDEFTSPVPPARLFKALILDSGNLLPKLLPQLIKSVEFTQGNGEAGSIRQISFQ 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           +G  +   KNRV+A+D ENFSY YSLIEG+ L+DK+E I Y+V+F P  DGGS N M ST
Sbjct: 61  DGIGLTSVKNRVEAVDPENFSYSYSLIEGEGLLDKMETIVYEVQFVPGPDGGSINKMKST 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG+IVLTEEE+KEGKEK+L MYK VE YL+QNPE Y
Sbjct: 121 YHTKGDIVLTEEEVKEGKEKALGMYKAVEAYLLQNPEAY 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106956|ref|XP_002314323.1| predicted protein [Populus trichocarpa] gi|222863363|gb|EEF00494.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 129/160 (80%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVF  +DE+TSP+ PARLFKALI+D  NL+PKL+PQ +KS+E  +G+G AGSIRQI+  
Sbjct: 1   MGVFAFSDEFTSPVPPARLFKALILDFGNLLPKLLPQLIKSVEFTQGNGEAGSIRQISFQ 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           +G  ++   NRV+A+D ENFSY YSLIEG+ L+DK+E + Y+V+F P  DGGS N M ST
Sbjct: 61  DGIGLRSVTNRVEAVDPENFSYSYSLIEGEGLLDKMETVVYEVQFVPGPDGGSINKMKST 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y+TKG+IVLTEEE+KEGKEK+L MYK VE YL+QNPE YA
Sbjct: 121 YHTKGDIVLTEEEVKEGKEKALGMYKAVEAYLLQNPEAYA 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130342|ref|XP_002328585.1| predicted protein [Populus trichocarpa] gi|222838567|gb|EEE76932.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 119/160 (74%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV + T E+T PISPAR+FKALI+DS+NLIPKL+PQ VKS+++  GDGGAGSI Q+N  
Sbjct: 1   MGVASYTQEFTCPISPARMFKALILDSNNLIPKLLPQIVKSVDLIHGDGGAGSIEQVNFT 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG  +K  K+R+D LD  N   KY++IEGD L +KLE I+Y+V+FE  +DGG    MTS+
Sbjct: 61  EGTDIKYVKHRIDELDRVNLVCKYTMIEGDSLGEKLESIAYEVRFEVGSDGGCDCKMTSS 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y   G+  L EEEIK G++K+  +YKVVE YL++NP  YA
Sbjct: 121 YLMLGDFTLKEEEIKAGQDKARGIYKVVEAYLLENPHVYA 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190613889|gb|ACE80948.1| putative allergen Pru p 1.05 [Prunus dulcis x Prunus persica]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 122/159 (76%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVFT   E+TS + PARLFKAL++D+ NL+PK+ PQA+KS EI EGDGG G+I++ +  
Sbjct: 1   MGVFTYATEFTSVVPPARLFKALVLDADNLVPKIAPQAIKSAEIVEGDGGVGTIKKTSFG 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG++    K++VDALD +NF Y YSLIEGD L DK+EKISY++K   +ADGGS    TS+
Sbjct: 61  EGSEYSYVKHQVDALDKDNFVYNYSLIEGDALSDKIEKISYEIKLVASADGGSVIKNTSS 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG++ + EE +K GKEK+ A++K++E YL+ NP+ Y
Sbjct: 121 YHTKGDVEIKEEHVKAGKEKAHALFKIIETYLVANPDAY 159

Source: Prunus dulcis x Prunus persica

Species: Prunus dulcis x Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190613887|gb|ACE80947.1| putative allergen Pru du 1.05 [Prunus dulcis x Prunus persica]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 122/159 (76%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVFT   E+TS + PARLFKAL++D+ NL+PK+ PQA+KS EI EGDGG G+I++ +  
Sbjct: 1   MGVFTYETEFTSVVPPARLFKALVLDADNLVPKIAPQAIKSAEIVEGDGGVGTIKKTSFG 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG++    K++VDALD +NF Y YSLIEGD L DK+EKISY++K   +ADGGS    TS+
Sbjct: 61  EGSEYGYVKHQVDALDKDNFVYNYSLIEGDALSDKIEKISYEIKLVASADGGSVIKNTSS 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG++ + EE +K GKEK+ A++K++E YL+ NP+ Y
Sbjct: 121 YHTKGDVEIKEENVKAGKEKAHALFKIIETYLVANPDAY 159

Source: Prunus dulcis x Prunus persica

Species: Prunus dulcis x Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477159|ref|XP_002273815.2| PREDICTED: pathogenesis-related protein STH-2 [Vitis vinifera] gi|147853968|emb|CAN79554.1| hypothetical protein VITISV_025728 [Vitis vinifera] gi|296083307|emb|CBI22943.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/160 (55%), Positives = 123/160 (76%), Gaps = 1/160 (0%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV + T E+T PI+P+R+FKALI+DS+NLIPKL+PQ ++SI++ +GDGGAG+I Q+N  
Sbjct: 1   MGVTSFTQEFTCPIAPSRIFKALILDSNNLIPKLLPQTIRSIDVVQGDGGAGTIEQVNFT 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           E + +K  K++++ LD ENF  KY +IEGDVL ++LE I+++VKFE  ADGGS   M S 
Sbjct: 61  EASNLKYVKHQIEELDKENFVCKYRMIEGDVLGEELESIAHEVKFE-AADGGSICKMASE 119

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y+TKG   + EEEIK GK +++ +YKVVE YL++NP  YA
Sbjct: 120 YHTKGKFEIKEEEIKAGKARAMGIYKVVEAYLLENPHVYA 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313184281|emb|CBL94145.1| putative Mal d 1.12 isoallergen [Malus x domestica]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 119/161 (73%), Gaps = 16/161 (9%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVFT TDEYTSPI P RLFKAL++D+H LIP+LMP+AVKSI               + +
Sbjct: 1   MGVFTRTDEYTSPIPPDRLFKALVLDAHILIPELMPEAVKSI---------------DTL 45

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLM-DKLEKISYDVKFEPTADGGSKNTMTS 119
           EG+Q+K   NRVD +D ENF Y Y+L+EG+ L+ +KLE I+Y  KFE  +DGGSKN + S
Sbjct: 46  EGSQLKSVINRVDEVDEENFVYAYTLVEGEPLVVEKLEYITYKAKFEAASDGGSKNRLVS 105

Query: 120 TYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
            YYTKG+IVL EEEIK G+EK+L MY+VVE YL+QNP+ YA
Sbjct: 106 NYYTKGDIVLKEEEIKAGREKALGMYRVVETYLLQNPDAYA 146

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478849|ref|XP_003609710.1| Pathogenesis-related protein [Medicago truncatula] gi|355510765|gb|AES91907.1| Pathogenesis-related protein [Medicago truncatula]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 119/160 (74%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV T T EY+S ++P+R+F ALI+DS NLIPKL+PQ VK + I EGDGGAGSI Q+N  
Sbjct: 1   MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EGN  K  K ++D LD EN   KY++IEGD L DKLE I+Y+VKFE T DGG    M S+
Sbjct: 61  EGNPFKYLKQKIDVLDKENLICKYTMIEGDPLGDKLESIAYEVKFEATNDGGCLCKMASS 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y T G+  + EE++KEG+E ++ +Y+VVE+YL++NP+ YA
Sbjct: 121 YKTIGDFDVKEEDVKEGRESTIGIYEVVESYLLENPQVYA 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501186|gb|AFK38659.1| unknown [Lotus japonicus]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 121/160 (75%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV T T E++S I+P+R+FKALI+DS NLIPKL+PQ VK +++ +G+G AGSI Q+N  
Sbjct: 1   MGVTTFTHEFSSSIAPSRMFKALIIDSKNLIPKLLPQFVKDVQVIQGEGEAGSIEQVNFN 60

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           E +  K  K R+D +D ENF  KY++IEGD L DKLE I+Y+VKFE T+DGG    MTS 
Sbjct: 61  EASPFKYLKQRIDEVDKENFICKYTMIEGDPLGDKLESIAYEVKFEATSDGGCLCKMTSH 120

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y T G+  + EE++KEGKE ++ +YKVVE+YL++NP+ YA
Sbjct: 121 YKTNGDFEVQEEQVKEGKESTIGIYKVVESYLLENPQVYA 160

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2199932	155	MLP423 "MLP-like protein 423"	0.832	0.961	0.333	2.1e-13
TAIR|locus:2152420	161	PYL11 "AT5G45860" [Arabidopsis	0.329	0.366	0.406	1.7e-06
TAIR|locus:2013920	159	AT1G70880 "AT1G70880" [Arabido	0.648	0.729	0.260	5.7e-06
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.541	0.584	0.29	1.1e-05
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.536	0.607	0.262	0.00014
TAIR|locus:2013930	316	MLP34 "AT1G70850" [Arabidopsis	0.530	0.300	0.306	0.00057
TAIR|locus:2152430	159	PYL12 "PYR1-like 12" [Arabidop	0.329	0.371	0.389	0.00027
TAIR|locus:2143804	164	AT5G28000 "AT5G28000" [Arabido	0.435	0.475	0.316	0.00091

TAIR|locus:2199932 MLP423 "MLP-like protein 423" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 52/156 (33%), Positives = 78/156 (50%)

Query:     1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINV 59
             MG+  V        SPA  F   + D  NL PK  P   K+I++  GDG A GSIR I  
Sbjct:     1 MGLSGVLHVEVEVKSPAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITY 60

Query:    60 VEGNQ-VKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMT 118
              EG+  VK S  R++A+DLEN S  YS+I G++L +  +     +   P  DGGS    +
Sbjct:    61 GEGSPLVKISAERIEAVDLENKSMSYSIIGGEML-EYYKTFKGTITVIPK-DGGSLLKWS 118

Query:   119 STYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ 154
               +    + +     IK+   K+   +K ++ YL++
Sbjct:   119 GEFEKTAHEIDDPHVIKDFAVKN---FKEIDEYLLK 151

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2152420 PYL11 "AT5G45860" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query:    32 PKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGD 90
             P+   Q VK+  +  GDGG GS+R++ VV G   + S+ R+D LD E+     S+I GD
Sbjct:    35 PQAYKQFVKTCNLSSGDGGEGSVREVTVVSGLPAEFSRERLDELDDESHVMMISIIGGD 93

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2013920 AT1G70880 "AT1G70880" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 32/123 (26%), Positives = 58/123 (47%)

Query:     1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINV 59
             +G+   T E  S +     F  L+V   + +    P  ++S E+ EG+ G  G++   N 
Sbjct:     9 VGIVETTVELKSSVEK---FHDLLVGRPHHMSNATPSNIQSAELQEGEMGQVGAVILWNY 65

Query:    60 VEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTS 119
             V   + K +K R+++LD E     Y ++EGD+L    E  S+   F+ T   G   ++  
Sbjct:    66 VHDGEAKSAKQRIESLDPEKNRITYRVVEGDLLK---EYTSFVTTFQVTPKEGEPGSVAH 122

Query:   120 TYY 122
              ++
Sbjct:   123 WHF 125

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query:    15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVD 73
             +PA +F  +     + + K  P+ V+S ++ +G+ G  GSI   N V   Q K +K R++
Sbjct:    27 APAAIFYHIYAGRPHHVAKATPRNVQSCDLHDGEWGTVGSIVYWNYVHEGQAKVAKERIE 86

Query:    74 ALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGS 113
              ++ E    K+ +IEGDV M + +     ++  P  +GG+
Sbjct:    87 LVEPEKKLIKFRVIEGDV-MAEYKSFLITIQVTPK-EGGT 124

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00014, P = 0.00014
 Identities = 26/99 (26%), Positives = 50/99 (50%)

Query:    17 ARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGG-AGSIRQINVVEGNQVKCSKNRVDAL 75
             A+ F  +  +  + + K  P  +   E+ EGD G  GSI     V   ++   KN+++A+
Sbjct:    21 AKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKYVHDGKLTVGKNKIEAV 80

Query:    76 DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPT-ADGGS 113
             D E     + ++EGD LM++ +  ++ ++  P   + GS
Sbjct:    81 DPEKNLITFKVLEGD-LMNEYKSFAFTLQVTPKQGESGS 118

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00057, P = 0.00057
 Identities = 30/98 (30%), Positives = 48/98 (48%)

Query:    17 ARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVDAL 75
             A  F  +     + + K  P  ++S ++ EGD G  GSI   N V   + K +K R++A+
Sbjct:   179 AEKFHHMFAGKPHHVSKATPGNIQSCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAV 238

Query:    76 DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGS 113
             D E     + +IEGD LM + +     ++  P   GGS
Sbjct:   239 DPEKNLITFRVIEGD-LMKEYKSFVITIQVTPK-HGGS 274

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2152430 PYL12 "PYR1-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query:    32 PKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGD 90
             PK     VK+ ++  GDGG GS+R++ VV       S  R+D LD E+     S+I GD
Sbjct:    35 PKTFKHFVKTCKLRSGDGGEGSVREVTVVSDLPASFSLERLDELDDESHVMVISIIGGD 93

GO:0009507 "chloroplast" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2143804 AT5G28000 "AT5G28000" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00091, P = 0.00091
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query:    15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVD 73
             SPA  F  + V   + + K     V++ ++ EG+ G   SI   N V   + K +K R++
Sbjct:    25 SPAEKFYQVYVGRPDHVAKATSSKVQACDLLEGEWGTISSIVNWNYVYAGKAKVAKERIE 84

Query:    74 ALDLENFSYKYSLIEGDVL 92
              ++ E    K+ +IEGDVL
Sbjct:    85 LVEPEKKLIKFRVIEGDVL 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.132   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       179   0.00089  109 3  11 23  0.49    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.28u 0.08s 20.36t   Elapsed:  00:00:01
  Total cpu time:  20.28u 0.08s 20.36t   Elapsed:  00:00:01
  Start:  Fri May 10 06:36:13 2013   End:  Fri May 10 06:36:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O50001	PRU1_PRUAR	No assigned EC number	0.5220	0.8882	0.9937	N/A	no
O24248	PRU1_PRUAV	No assigned EC number	0.5157	0.8882	0.9937	N/A	no
P17641	PRS1_SOLTU	No assigned EC number	0.525	0.8659	1.0	N/A	no
P17642	PRS2_SOLTU	No assigned EC number	0.5375	0.8659	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_X000006 hypothetical protein (160 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	5e-57
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	5e-28
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	1e-11
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	1e-09

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score =  175 bits (447), Expect = 5e-57
 Identities = 71/149 (47%), Positives = 93/149 (62%), Gaps = 1/149 (0%)

Query: 4   FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN 63
            T+  E    +   +L+KA ++DSH L PKL P  +KS+E+ EGDGG GSI+ I    G 
Sbjct: 1   GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPV-IKSVELLEGDGGPGSIKLITFGPGG 59

Query: 64  QVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123
           +VK  K R+DA+D EN +YKY++IEGDVL D  +    ++KF P  DGG     T  Y  
Sbjct: 60  KVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEK 119

Query: 124 KGNIVLTEEEIKEGKEKSLAMYKVVENYL 152
           KG+    EEEIK GKEK+L M+K VE YL
Sbjct: 120 KGDAEPPEEEIKAGKEKALKMFKAVEAYL 148

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  101 bits (254), Expect = 5e-28
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINVV 60
            V  +  E    +S  + +KA      +LIPK +P  ++ +E+ EG+ G  GSI++    
Sbjct: 1   LVGKLETEVEIKVSADKFYKAF-KLEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYT 59

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           E  + K  K R++A D +N +  YS++EGDVL D    I+      P ++GGS    T  
Sbjct: 60  EDGKPKVVKERIEADDEKNKTITYSVLEGDVLEDYKSFITTLQVI-PKSNGGSIVKWTIE 118

Query: 121 YYTKG-NIVLTEEEIKEGKEKSLAMYKVVENYLMQN 155
           Y   G ++   E+ +K   +    + K +E +L+ N
Sbjct: 119 YEKIGDDVPEPEKYLKFVVK----LTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 15/124 (12%)

Query: 15  SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDA 74
              +++   ++     + K  P AV S E+  G  G G++R + + +G  V   + R+ A
Sbjct: 12  PADKVWA--LLSDFGGLHKWHP-AVASCELEGGGPGVGAVRTVTLKDGGTV---RERLLA 65

Query: 75  LDLENFSYKYSLIEGDVLMDKLEKISY--DVKFEPTADGGSKNTMTSTYYTKGNIVLTEE 132
           LD     Y Y ++EG + +      +Y   ++  P  DGG++ T T+ +       LT+E
Sbjct: 66  LDDAERRYSYRIVEGPLPVK-----NYVATIRVTPEGDGGTRVTWTAEFDPPE--GLTDE 118

Query: 133 EIKE 136
             + 
Sbjct: 119 LARA 122

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 15  SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVD 73
             A  F    V  ++  PK     ++ +++ EGD G+ GSI+  N     + +  K R++
Sbjct: 14  GSAEKFFKRFVSRNHHFPKATGHHIQGVDLHEGDWGSHGSIKIWNYTVDGKEEVFKERIE 73

Query: 74  ALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGS 113
           A+D E  +  + ++EGDV M++ +     ++  P + GGS
Sbjct: 74  AVDDEKKTITFRVLEGDV-MEEYKSFKGTIQVTPKSGGGS 112

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.8
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.7
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.68
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.6
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.56
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.54
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.54
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.46
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.44
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.42
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.41
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.35
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.34
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.33
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.32
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.32
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.31
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.24
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.23
PRK10724	158	hypothetical protein; Provisional	99.22
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.16
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.91
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.81
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.74
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.68
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.54
COG5637	217	Predicted integral membrane protein [Function unkn	98.51
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.51
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.4
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.38
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.36
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.36
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	98.25
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.23
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.2
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.18
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.08
COG3832	149	Uncharacterized conserved protein [Function unknow	97.98
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	97.75
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.6
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	97.42
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.39
cd08874	205	START_STARD9-like C-terminal START domain of mamma	97.2
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	96.95
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	96.7
cd08913	240	START_STARD14-like Lipid-binding START domain of m	96.65
cd08905	209	START_STARD1-like Cholesterol-binding START domain	96.51
cd00177	193	START Lipid-binding START domain of mammalian STAR	96.36
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	96.22
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	96.2
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	96.19
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	96.07
cd08914	236	START_STARD15-like Lipid-binding START domain of m	96.05
cd08906	209	START_STARD3-like Cholesterol-binding START domain	95.82
COG4276	153	Uncharacterized conserved protein [Function unknow	95.8
cd08871	222	START_STARD10-like Lipid-binding START domain of m	95.38
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	95.11
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	94.37
smart00234	206	START in StAR and phosphatidylcholine transfer pro	94.21
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	94.17
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	93.54
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	93.22
cd08872	235	START_STARD11-like Ceramide-binding START domain o	92.44
cd08908	204	START_STARD12-like C-terminal lipid-binding START	88.12
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	87.44

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=6.3e-42  Score=264.56  Aligned_cols=150  Identities=37%  Similarity=0.588  Sum_probs=137.3

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCc-eEEEEEeecCceeeeeeEEEeeeecCc
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAG-SIRQINVVEGNQVKCSKNRVDALDLEN   79 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~G-svR~~~~~~g~~~~~~kErl~~~D~~~   79 (179)
                      |++++++.|+++++||+++|++++ +.++++|+++|+.|++|+++||||++| |||.|+|.+|++..++|||++.+|++|
T Consensus         1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~   79 (151)
T PF00407_consen    1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN   79 (151)
T ss_dssp             SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred             CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence            999999999999999999999997 788889999999999999999998877 999999999999899999999999999


Q ss_pred             ceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703           80 FSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        80 ~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n  155 (179)
                      ++++|+++|||++. .|++|.+++++.|.++|+|+++|+++|+++++..++|+   ...+++.+|+|+||+||++|
T Consensus        80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~---~~~~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   80 KTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPE---KYLDFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             TEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcH---HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999987 49999999999999999999999999999988764444   23457999999999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=1.5e-35  Score=227.66  Aligned_cols=146  Identities=39%  Similarity=0.585  Sum_probs=127.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCccc-ccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLI-PKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~ll-p~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ++++.+++|+||||+||++++ ||...+ +.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|++
T Consensus         1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~   78 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY   78 (148)
T ss_pred             CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence            478999999999999999997 998424 45666 899999999999999999999998877779999999999999999


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      +|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|+   ..++.+..+++++++|++.
T Consensus        79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~  147 (148)
T cd07816          79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEE---EIKAGKEKALKMFKAVEAY  147 (148)
T ss_pred             EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHH---HHHhHHHHHHHHHHHHHhc
Confidence            99999999875469999999999999888999999999999987644444   2345888889999998875

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.80  E-value=7.8e-18  Score=124.41  Aligned_cols=138  Identities=23%  Similarity=0.331  Sum_probs=113.4

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      .++.+++|++|+++||+++. |+.+ +++|+|. ++++++++++.++|+++.+.+..|.   .+++++..+|+.++++.|
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~   75 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLS-DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSY   75 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHh-CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEE
Confidence            46788999999999999997 9999 8999996 8888887765468999999987663   688999999998789999


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yl  152 (179)
                      ++.+|+.   ++.++.++++++|.++|+|.++|+..|++.+. .+.+.......+.....++.|++++
T Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~  139 (140)
T cd07821          76 RIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL  139 (140)
T ss_pred             EecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence            9998743   37788999999999887899999999999865 2333333445566777788887775

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.70  E-value=6.8e-15  Score=108.64  Aligned_cols=108  Identities=25%  Similarity=0.451  Sum_probs=88.5

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      +.+++.++.|++||++||+++. |+.+ +++|+|+ +.++++++++ ++|..+.++....   ..+++++..+|++++.+
T Consensus         1 M~~~~~~~~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~   73 (139)
T PF10604_consen    1 MFKVEVSIEVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRI   73 (139)
T ss_dssp             -EEEEEEEEESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEE
T ss_pred             CEEEEEEEEECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEE
Confidence            4678899999999999999997 9999 9999995 8899987633 4465566664331   37999999999889999


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT  123 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~  123 (179)
                      .|++. .    .++.++..+++++|.++| |.|+|+.+|++
T Consensus        74 ~~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~  108 (139)
T PF10604_consen   74 TWRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP  108 (139)
T ss_dssp             EEEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred             EEEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence            99996 1    247788999999999865 99999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.68  E-value=5.2e-15  Score=111.05  Aligned_cols=137  Identities=15%  Similarity=0.173  Sum_probs=98.1

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc----eeeeeeEEEeeeecCcce
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN----QVKCSKNRVDALDLENFS   81 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~----~~~~~kErl~~~D~~~~~   81 (179)
                      ++.++.|++|+++||+++. |+.+ +|+|+|+ +++++++++.+ .+....+....+.    -...+..++.+.++.++.
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~-D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   76 (144)
T cd08866           1 VVARVRVPAPPETVWAVLT-DYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE   76 (144)
T ss_pred             CeEEEEECCCHHHHHHHHh-Chhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence            3578999999999999997 9999 9999996 88999887643 1221111100000    012345566667766889


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCC-CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTAD-GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~-g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      +.|++++|+     +..|.++++++|.++ |+|.++|..+|++...  .|...+ ...++.+..++++|.+.+.
T Consensus        77 i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~ae  143 (144)
T cd08866          77 LDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEAE  143 (144)
T ss_pred             EEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998874     678999999999988 6899999999998753  333343 3344567788888877653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.60  E-value=7e-14  Score=104.66  Aligned_cols=138  Identities=20%  Similarity=0.246  Sum_probs=96.4

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      ++.+++|++|+++||+++. |+.+ +|+|+|.  .+++.+++++....++.+... .|... .. +....+|++.+++.|
T Consensus         1 ~~~s~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~i~~   74 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVH-TW-TSRRVLDPEGRRIVF   74 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEE-EE-EEEEEEcCCCCEEEE
Confidence            4688999999999999997 9999 9999996  455555543222245556665 33322 22 344567887889999


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      ..+++..   .+..+.++++++|.++++|.|+|..+|++....+.+...+ +...+.+..++++|-+++
T Consensus        75 ~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  140 (142)
T cd08861          75 RQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA  140 (142)
T ss_pred             EEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence            9887533   2788899999999987889999999999986544333332 333334556666665554

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.56  E-value=7.8e-13  Score=98.00  Aligned_cols=112  Identities=23%  Similarity=0.291  Sum_probs=83.0

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      .+++.++.|+||+++||+++. |+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+.+
T Consensus         2 ~~v~~s~~i~ap~e~V~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i   76 (140)
T cd07819           2 IKVSREFEIEAPPAAVMDVLA-DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV   76 (140)
T ss_pred             ceEEEEEEEeCCHHHHHHHHh-Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence            578999999999999999997 9999 9999996 8899986653 3333344455544321111122222 223 6789


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG  125 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~  125 (179)
                      +|+..+|.    +..++.++++++|.++ +|.|+|+.++++..
T Consensus        77 ~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~  114 (140)
T cd07819          77 SWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV  114 (140)
T ss_pred             EEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence            99998875    3778889999999977 79999999999865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.54  E-value=7.7e-13  Score=97.35  Aligned_cols=136  Identities=15%  Similarity=0.144  Sum_probs=95.4

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      ++.++.|++|+++||+++. |+.+ +++|.|. +.+++.+.++ .++|+...+....++....++++++.+| .++.+.|
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~-p~~~~~~   76 (140)
T cd08865           1 VEESIVIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYE-PGRRVVF   76 (140)
T ss_pred             CceEEEEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEec-CCcEEEE
Confidence            3678899999999999997 9999 9999996 6778876543 4678888887664433335788999887 4578899


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      ...+|+     + .+..++++.|.++ +|.++|+.+|+...-.......+ ..++..+..+++++.+++
T Consensus        77 ~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  138 (140)
T cd08865          77 RGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL  138 (140)
T ss_pred             EecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            886552     2 3688999999865 79999999999732111111122 223334455555555554

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.54  E-value=2.5e-13  Score=101.70  Aligned_cols=134  Identities=18%  Similarity=0.237  Sum_probs=99.2

Q ss_pred             EEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEE
Q 044703            7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSL   86 (179)
Q Consensus         7 ~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~i   86 (179)
                      +.++.|++|++.||+++. |+.+ +|+|+|+ +++++++++++ .+....+...-++....+..++. +++ +++++++.
T Consensus         2 ~~s~~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~   75 (138)
T cd07813           2 SKSRLVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL   75 (138)
T ss_pred             eEEEEcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence            678999999999999997 9999 9999996 88999988764 34445565554432234445544 666 66889998


Q ss_pred             EecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           87 IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        87 ieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      ++|.     ++.+.+++++.|.++|+|.|+|...|++.+..  +...+ ..+.+....+++++++.+.
T Consensus        76 ~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l--~~~l~~~~~~~~~~~~l~~f~~~~~  136 (138)
T cd07813          76 VDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL--LEALAGLVFDEVAKKMVDAFEKRAK  136 (138)
T ss_pred             cCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8883     67789999999999889999999999997532  22222 2334466677777776654

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.46  E-value=9.5e-12  Score=92.04  Aligned_cols=106  Identities=19%  Similarity=0.205  Sum_probs=81.2

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      +++.++.|+||+++||+++. |+.+ +|+|+|+ ++++++..+..++|+...++...+.   .+..++.++++.+ .+++
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p~~-~~~~   74 (138)
T cd08862           2 KFEATIVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRPGH-SFTW   74 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecCCC-EEEE
Confidence            57889999999999999997 9999 9999996 8889876543267876666654332   4677888888654 6777


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT  123 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~  123 (179)
                      +... +     ...+..+++++|.++++|.++|+.+|..
T Consensus        75 ~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~  107 (138)
T cd08862          75 TGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSG  107 (138)
T ss_pred             EecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence            7533 2     2345679999998767899999988874

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.44  E-value=1.7e-11  Score=90.43  Aligned_cols=110  Identities=18%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC-ceeeeeeEEEeeeecCcceEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-NQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      ++.++.|++|+++||+++. |+.+ +|+|+|. +..++...  .++|+...+.+..+ +....+.+++.++|+. +++.|
T Consensus         2 v~~~~~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~   75 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW   75 (141)
T ss_pred             eEEEEEecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence            6789999999999999997 9999 8999985 55555321  45777787877543 2334678888888875 58899


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK  124 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~  124 (179)
                      +...++..   ......+++++|.++++|.++|...|...
T Consensus        76 ~~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g~  112 (141)
T cd07822          76 RGGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSGL  112 (141)
T ss_pred             EecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence            98766532   33466899999987778999999888653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.42  E-value=2e-11  Score=87.56  Aligned_cols=135  Identities=19%  Similarity=0.292  Sum_probs=97.2

Q ss_pred             EEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703            7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS   85 (179)
Q Consensus         7 ~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~   85 (179)
                      +.++.|++|+++||+++. |+.+ +++|.|+ +.++++.++. ...|....+.+..+ .......++..+++ +..++|+
T Consensus         2 ~~~~~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~   76 (141)
T cd07812           2 EASIEIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR   76 (141)
T ss_pred             cEEEEeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence            568899999999999997 9999 9999996 7888877643 45666666666422 22357788887777 6688999


Q ss_pred             EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC--CCHHHHHHHHHHHHHHHHHHHH
Q 044703           86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV--LTEEEIKEGKEKSLAMYKVVEN  150 (179)
Q Consensus        86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~--~~~~~~~~~~e~~~~~~k~ie~  150 (179)
                      ...++..    ..+..++++.+.++++|.++|+.++.+.....  ..+...+.+++.+..+++.+++
T Consensus        77 ~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T cd07812          77 VTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA  139 (141)
T ss_pred             EecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence            8876642    56889999999976689999999999876532  2222223344445555555544

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.41  E-value=3e-11  Score=92.67  Aligned_cols=116  Identities=12%  Similarity=0.172  Sum_probs=83.7

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEe-ecCceeeeeeEEEeeeecCcceE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINV-VEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ..+++++|++||+.||+++. |+.+ +|.|+|. ++++++++.+ .+.|+.-++.. ..|....+..|+  .+|+..+++
T Consensus         2 ~~~~si~i~a~~~~v~~lva-Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i   76 (146)
T cd08860           2 RTDNSIVIDAPLDLVWDMTN-DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTV   76 (146)
T ss_pred             cceeEEEEcCCHHHHHHHHH-hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEE
Confidence            46789999999999999997 9999 9999996 8889988754 34453222233 233333333443  378888888


Q ss_pred             EEE-EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCH
Q 044703           83 KYS-LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTE  131 (179)
Q Consensus        83 ~Y~-iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~  131 (179)
                      .++ ..+|     ++....++++|+|.++ ||.|++..+|+..++.+...
T Consensus        77 ~~~~~~~~-----p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~~~~  120 (146)
T cd08860          77 RARRVETG-----PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGAPVDD  120 (146)
T ss_pred             EEEEecCC-----CcceeeeeEEEEECCC-CEEEEEEEEEEECCCCccch
Confidence            874 2222     3888999999999966 59999999999876554433

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.35  E-value=8.5e-11  Score=86.70  Aligned_cols=126  Identities=21%  Similarity=0.337  Sum_probs=87.6

Q ss_pred             EcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecCc
Q 044703           12 SPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDV   91 (179)
Q Consensus        12 i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~~   91 (179)
                      |+||+++||+++. |+.+ +|.|+|. ++++++++.++. +..-.+....++....+..++.. +.... +.+..++|+ 
T Consensus         1 V~ap~~~V~~~i~-D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~-   73 (130)
T PF03364_consen    1 VNAPPEEVWSVIT-DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISGP-   73 (130)
T ss_dssp             ESS-HHHHHHHHT-TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSETT-
T ss_pred             CCCCHHHHHHHHH-HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCCC-
Confidence            6899999999997 9999 9999996 889999887643 33335566554433455666553 44444 888887775 


Q ss_pred             cccceeeEEEEEEeeecCC--CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703           92 LMDKLEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV  148 (179)
Q Consensus        92 ~~~~~~~y~~ti~v~p~~~--g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i  148 (179)
                          ++.+.++++++|.++  |+|.++++.+|+..+..+.+.... ....+....+++++
T Consensus        74 ----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (130)
T PF03364_consen   74 ----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF  129 (130)
T ss_dssp             ----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence                899999999999975  368888888888876665555443 22233344444444

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.34  E-value=1.3e-10  Score=86.45  Aligned_cols=137  Identities=19%  Similarity=0.261  Sum_probs=86.8

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc--eeeeeeEEEeeeecCcceE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN--QVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~   82 (179)
                      +++.++.+++|+++||+++. |+.+ +++|+|+ +++++.++++ ....  .++...+.  ..-..+-++..+|+. +++
T Consensus         2 ~~~~~~~i~a~~e~v~~~l~-D~~~-~~~w~p~-~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   74 (144)
T cd05018           2 KISGEFRIPAPPEEVWAALN-DPEV-LARCIPG-CESLEKIGPN-EYEA--TVKLKVGPVKGTFKGKVELSDLDPP-ESY   74 (144)
T ss_pred             eeeeEEEecCCHHHHHHHhc-CHHH-HHhhccc-hhhccccCCC-eEEE--EEEEEEccEEEEEEEEEEEEecCCC-cEE
Confidence            46889999999999999997 9999 9999996 7777766532 1111  12222121  111224455555544 567


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-CCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-VLTEEEI-KEGKEKSLAMYKVVENY  151 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-~~~~~~~-~~~~e~~~~~~k~ie~y  151 (179)
                      .++....+..  ....+..+++++|. +++|.++|+.+|++.+.. ..+...+ +.+++.+..+++.|.++
T Consensus        75 ~~~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~  142 (144)
T cd05018          75 TITGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK  142 (144)
T ss_pred             EEEEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            7776543322  25689999999998 668999999999986532 2233333 33333444555555443

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.33  E-value=8.1e-11  Score=86.97  Aligned_cols=137  Identities=15%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS   85 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~   85 (179)
                      ++.+++|+||++.||+++. |+.+ +|+|+|+ +..++.....|  |+.+.+....++....+..++.++|+. +.+.|+
T Consensus         2 i~~s~~I~a~~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~   75 (139)
T cd07814           2 ITIEREFDAPPELVWRALT-DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT   75 (139)
T ss_pred             eEEEEEecCCHHHHHHHcC-CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence            6788999999999999997 9999 9999995 22232211222  666655544332234678888988855 689999


Q ss_pred             EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      ...++..  +.-....++++.|.+ ++|.++|+.++.+....  ........+.....++..|.+|+.
T Consensus        76 ~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~E  138 (139)
T cd07814          76 WAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALLE  138 (139)
T ss_pred             ecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHhh
Confidence            8876531  134568889999997 57999999999875321  122223344455566666666653

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.32  E-value=5.6e-11  Score=89.03  Aligned_cols=139  Identities=14%  Similarity=0.091  Sum_probs=92.0

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC--CCCceEEEEEeec-CceeeeeeEEEeeeecCcceE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD--GGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd--g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ++.++.|+||+++||+++. |+.+ +|+|.|.... .....++  -++|+...+.... |++ ..+..++.++++.. .+
T Consensus         2 i~~~~~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l   76 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLA-DPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LI   76 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHh-Cccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EE
Confidence            6788999999999999997 9999 9999985222 2222333  3788888877664 333 34566778777655 68


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yl  152 (179)
                      .|+..-.+.   +......+++++|.++|+|.++++..|...+...................+..|++|+
T Consensus        77 ~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  143 (144)
T cd07825          77 AWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA  143 (144)
T ss_pred             EEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence            888541121   1233567889999887889999999988764311101111122345667777777775

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.32  E-value=1.8e-10  Score=86.93  Aligned_cols=112  Identities=18%  Similarity=0.135  Sum_probs=81.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeE---EEE--EcCCCCCceEEEEEeecCceeeeeeEEEeeeecC
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKS---IEI--FEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~s---ve~--~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~   78 (179)
                      .+++.++.|++|+++||+++. |+.+ +|+|+|. ...   ++.  .+++.++|+...++...+.  .....++..+++ 
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i~-D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-   75 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYVN-DLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-   75 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHHh-Cccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-
Confidence            368899999999999999997 9999 9999995 332   221  1233468888777765421  133456676764 


Q ss_pred             cceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703           79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG  125 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~  125 (179)
                      ++++.|++..++.+   -.++..+++++|. ++||.++|+.+|+...
T Consensus        76 ~~~i~~~~~~~~~~---~~~~~~~~~~~~~-~~gT~v~~~~~~~~~~  118 (150)
T cd07818          76 NERIEYELRFIKPF---EATNDVEFTLEPV-GGGTKVTWGMSGELPF  118 (150)
T ss_pred             CcEEEEEEEecCCc---cccceEEEEEEEc-CCceEEEEEEEecCCc
Confidence            56799998765432   1367899999999 4579999999998654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.31  E-value=1.2e-10  Score=86.12  Aligned_cols=108  Identities=21%  Similarity=0.283  Sum_probs=79.0

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      +++.++.|++|+++||+++. |+.+ +|+|.|+ +++++++.+.   +....+....|.. ..+..++...++ ++.+.|
T Consensus         1 ~v~~~i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~   72 (139)
T cd07817           1 TVEKSITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAW   72 (139)
T ss_pred             CeeEEEEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEE
Confidence            36889999999999999997 9999 9999996 8888876441   2222233322332 345666665544 556999


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN  126 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~  126 (179)
                      ....|.     + .+.+++.+.|.++++|.+++++.|++...
T Consensus        73 ~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~  108 (139)
T cd07817          73 RSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG  108 (139)
T ss_pred             EECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence            876653     3 46789999998777899999999998753

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.24  E-value=2.6e-10  Score=85.55  Aligned_cols=108  Identities=11%  Similarity=0.112  Sum_probs=84.4

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC---CCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD---GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd---g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ++.++.|++|+++||+.+. |..+ +|+|+|+ +.++++++.+   ..+|+.-.+.+..++..-.++-++..+++ ++.+
T Consensus         1 ~~~s~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f   76 (137)
T cd07820           1 LERSTVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRF   76 (137)
T ss_pred             CeEEEEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeE
Confidence            4678999999999999997 9999 9999997 7788887433   24678888887765422245666666654 5578


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT  123 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~  123 (179)
                      +...+.|.     +..+..++.+.|.++ ||.++++++|+.
T Consensus        77 ~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~  111 (137)
T cd07820          77 VDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL  111 (137)
T ss_pred             EEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence            88887764     666788899999876 799999999997

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.23  E-value=1.1e-09  Score=82.88  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=77.5

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEc--CCCCCceEEEEEeecC-ceeeeeeEEEeeeecCcceE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFE--GDGGAGSIRQINVVEG-NQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~e--Gdg~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~   82 (179)
                      ++.+..|++|+++||+++. |+.. +|+|+|+ ++++++++  ++.++|+.-++..... +....+.-++.+.| ..+.+
T Consensus         3 ~~~~~~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~   78 (146)
T cd07824           3 FHTVWRIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLL   78 (146)
T ss_pred             ceEEEEecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEE
Confidence            4667899999999999997 9999 9999996 88998886  3346777655543322 21123445555544 55678


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG  125 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~  125 (179)
                      .++. +|+.     . ...+++|.|.++ ||.|+++.+++...
T Consensus        79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~~  113 (146)
T cd07824          79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTTK  113 (146)
T ss_pred             EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence            8885 5642     2 268899999755 79999999999743

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=99.22  E-value=8.2e-10  Score=85.91  Aligned_cols=135  Identities=17%  Similarity=0.256  Sum_probs=96.3

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      -.+..++.|++|++++|+++. |..+ +|+|+|. .+++++++.++. +.+..++.+-++-...+..|.. +++.+ ++.
T Consensus        15 ~~i~~~~~v~~s~~~v~~lv~-Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~   88 (158)
T PRK10724         15 PQISRTALVPYSAEQMYQLVN-DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL   88 (158)
T ss_pred             CeEEEEEEecCCHHHHHHHHH-HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence            367888999999999999997 9999 9999996 778888765432 3344455544433345666655 45444 799


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENY  151 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~y  151 (179)
                      +.+++|+     ++.+.+.|++.|.++++|.|++..+|+....  .....+ ....+.+..|.+++++.
T Consensus        89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~--l~~~~~~~~~~~~~~~mv~AF~~R  150 (158)
T PRK10724         89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK--LIELAFGRVFKELASNMVQAFTVR  150 (158)
T ss_pred             EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999884     7889999999999877899999999996532  222122 23344556666666654

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.16  E-value=3.5e-09  Score=80.20  Aligned_cols=139  Identities=18%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             EEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeee--eEEEeeeecCcceEEE
Q 044703            7 TDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCS--KNRVDALDLENFSYKY   84 (179)
Q Consensus         7 ~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~--kErl~~~D~~~~~~~Y   84 (179)
                      +.+++|++||++||+++. |... ++.|.|+ +++++.. |++.  ..-.+++..|+-...+  +=++..++++.+++.+
T Consensus         2 ~~~~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   75 (146)
T cd07823           2 ENEFTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVE-GDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL   75 (146)
T ss_pred             CceEEecCCHHHHHHHhc-CHHH-HHhcCCC-ceecccc-CCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence            568899999999999997 9999 8999997 7777654 2222  2223344333211122  2245556657778887


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-CCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-VLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      +.-..+....+--....++++.| .+++|.++|.++++..+.. ......+ +.+++.+..+++.|.+.+
T Consensus        76 ~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~  144 (146)
T cd07823          76 EATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL  144 (146)
T ss_pred             EEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence            76432111111224677888888 4568999999999876532 2222223 333445556666666554

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.91  E-value=6.4e-08  Score=74.19  Aligned_cols=139  Identities=17%  Similarity=0.247  Sum_probs=97.5

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc--eeeeeeEEEeeeecCcceEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN--QVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~~   83 (179)
                      ++-+..|++|+++||+.+. |... +..-+|+ ++|++. +||.   ..-.+.+.-|.  ..-..+=++..+|+..++++
T Consensus         3 ~~G~f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e~-~g~e---~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~   75 (146)
T COG3427           3 YEGTFRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVET-NGDE---YTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSIT   75 (146)
T ss_pred             ccceEEecCCHHHHHHHhc-CHHH-HHhhcCC-cceeee-cCCe---EEEEEEEeecceeEEEEEEEEEccccCCCcEEE
Confidence            5678899999999999996 9999 7789997 999984 4552   22223333331  11123556677789999998


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHHhc
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yll~  154 (179)
                      .+.-+|..-  .+-+.++.+++.|.+++ |.+.|.+.-+-.+. ...-.+.+ ..+++.+..+++.|.++|-+
T Consensus        76 i~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~  145 (146)
T COG3427          76 INGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA  145 (146)
T ss_pred             EEeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888664433  47888999999999876 99999988776553 22223333 34555677888888887754

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.81  E-value=3.8e-07  Score=69.06  Aligned_cols=134  Identities=19%  Similarity=0.258  Sum_probs=82.5

Q ss_pred             EEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc-e-eeeeeEEEeeeecCcceEEEEE
Q 044703            9 EYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN-Q-VKCSKNRVDALDLENFSYKYSL   86 (179)
Q Consensus         9 ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~-~-~~~~kErl~~~D~~~~~~~Y~i   86 (179)
                      +.+|++|+++||+++. |... +-..+|+ +++++.+. +.--+.   ++..-|. + .-..+=++..+|+.++.. .++
T Consensus         2 s~~v~a~~~~vw~~l~-D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~   73 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLS-DPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF   73 (140)
T ss_dssp             EEEECS-HHHHHHHHT--HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred             cEEecCCHHHHHHHhc-CHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence            5789999999999997 9999 7799997 88888765 411111   2222221 1 112344566677777653 444


Q ss_pred             EecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           87 IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        87 ieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      -..+...  -.+..+.+++...++++|.+.|+++++-.+- .......+ ..+++.+..+++.+++.|
T Consensus        74 ~g~g~~~--~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l  139 (140)
T PF06240_consen   74 EGRGRGG--GSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL  139 (140)
T ss_dssp             EEEECTC--CEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCcc--ceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333322  4456677777776666799999999998764 33334444 344456667777777654

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.74  E-value=3.9e-07  Score=70.13  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=93.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.++.|++|+++||+++. |+.. ++.|.|..       ..+-.+|...++.+...+. .....++.++|+. +.+.
T Consensus        11 ~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~-~~l~   79 (157)
T cd08899          11 ATLRFERLLPAPIEDVWAALT-DPER-LARWFAPG-------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPP-RLLA   79 (157)
T ss_pred             eEEEEEEecCCCHHHHHHHHc-CHHH-HHhhcCCC-------CCCcccCceEEEEecCCCC-CccceEEEEEcCC-cEEE
Confidence            568899999999999999997 9999 99999842       1233456555565543211 2456677777666 4778


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccccce
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLE  163 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~~~~  163 (179)
                      |+...++      .....+++|++.+ ++|.++.+.++.+...      ......+.-..++..|.+|+.+.+=..+-.-
T Consensus        80 ~~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~~~------~~~~~~~GW~~~L~~Lk~~~e~~~~~~~~~~  146 (157)
T cd08899          80 FTWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDERF------GAGAVGAGWHLCLDVLEAALEGGPPAPFWDA  146 (157)
T ss_pred             EEecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCchh------hhhhhcccHHHHHHHHHHHHcCCCCCCcccc
Confidence            8875443      1235678888865 5799888877765331      1122345677888999999998775555554


Q ss_pred             ecc
Q 044703          164 FSS  166 (179)
Q Consensus       164 ~~~  166 (179)
                      |-+
T Consensus       147 ~~~  149 (157)
T cd08899         147 FAQ  149 (157)
T ss_pred             chh
Confidence            444

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.68  E-value=6.1e-07  Score=66.84  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=80.4

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      +++.++.|+||+++||+++. |... +++|+|...  .....|.+..|   .+.+.++. .....-++..+++.. .+.|
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p~~-~l~~   72 (145)
T cd08898           2 RIERTILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDPPR-RFSF   72 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCccee---EEecCCCC-ccceEEEEEEeCCCc-EEEE
Confidence            57889999999999999997 9999 899998632  11111222222   23333221 013445666665544 6777


Q ss_pred             EEEecCc---cc-cceeeEEEEEEeeecCCCCceEEEEEE-EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           85 SLIEGDV---LM-DKLEKISYDVKFEPTADGGSKNTMTST-YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        85 ~iieG~~---~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~-ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      +......   .. ..-.....+++++|.+ ++|.|+++.. |...++.. .........+.-..++..|++||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~-~~~~~~~~~~gw~~~l~~L~~~le  144 (145)
T cd08898          73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAER-RAEAYRMNEGGWDEQLENLVAYVE  144 (145)
T ss_pred             EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHH-HHHHHHhhhhhHHHHHHHHHHHhc
Confidence            7643320   00 0122356889999986 4699999876 43221110 011222344566778888888875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.54  E-value=1.9e-05  Score=62.39  Aligned_cols=144  Identities=12%  Similarity=0.077  Sum_probs=89.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCce---eeeeeEEEeeeecCcc
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLENF   80 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~   80 (179)
                      ..+..+..|++||+++|+++. |.+. .|+|.|. +.++++++..+.--.+-.+.+....+   -..+-.+-...+.++.
T Consensus        41 ~~~k~~~~i~~s~e~v~~vi~-d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~  117 (195)
T cd08876          41 KEFKAVAEVDASIEAFLALLR-DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG  117 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHHHh-hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence            567788889999999999997 9998 9999995 88999887653212233333332211   1122211112222234


Q ss_pred             eEEEEEEecCc--cc-cc---eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044703           81 SYKYSLIEGDV--LM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVENYL  152 (179)
Q Consensus        81 ~~~Y~iieG~~--~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie~yl  152 (179)
                      .+...+..++.  +. ..   ...+.+.+.++|.++++|.+++...+++.+.  .|.-.++ .++.....+++++++.+
T Consensus       118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444443322  11 01   4667788999999888999999998888753  3343443 34445667888877654

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.51  E-value=1.4e-06  Score=68.80  Aligned_cols=109  Identities=14%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec-CceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ..++.+++|+.|++.||...+ |+.+ +|.||. ++.||++.+...     -+|+... ++..-++.-+|. -|.++..|
T Consensus        70 i~v~~~V~I~kPae~vy~~W~-dLe~-lP~~Mk-hl~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~I  140 (217)
T COG5637          70 IEVEVQVTIDKPAEQVYAYWR-DLEN-LPLWMK-HLDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGERI  140 (217)
T ss_pred             eEEEEEEEeCChHHHHHHHHH-hhhh-hhHHHH-hhceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcEE
Confidence            568899999999999999997 9999 999998 599999886542     4566543 433234555655 57899999


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN  126 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~  126 (179)
                      .+.=++|.-++.     .+.++|.+..++.|.|+.+.+|.+-++
T Consensus       141 ~W~Sl~Ga~v~N-----sG~VrF~~~pg~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         141 QWESLPGARVEN-----SGAVRFYDAPGDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             eeecCCCCcCCC-----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence            999999964432     467899998877889999999997554

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.51  E-value=5.5e-06  Score=60.87  Aligned_cols=134  Identities=14%  Similarity=0.038  Sum_probs=80.4

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      +++.++.|+|||++||+++. |... ++.|.++..     .+++-.+|..-.+.....+. ..+.=++.+++ .++.+.|
T Consensus         1 ~~~~~~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~   71 (136)
T cd08893           1 KFVYVTYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVH   71 (136)
T ss_pred             CeEEEEEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEE
Confidence            46789999999999999997 9999 899998621     12333444433344333111 13444666676 5556777


Q ss_pred             EEEecCccc-cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           85 SLIEGDVLM-DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        85 ~iieG~~~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      +...++... ..-.....++.++|.++ +|.++.+.+-.+.+     +...+...+....+++.|.++|.
T Consensus        72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e  135 (136)
T cd08893          72 TWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE  135 (136)
T ss_pred             EEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence            764333210 01234677888888754 67666665543221     12223445567778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.40  E-value=1.4e-05  Score=59.97  Aligned_cols=134  Identities=13%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccC-cceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMP-QAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P-~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      ++.+..|+||+++||+++. |... +.+|++ +.+. +...+.|..+|..-.+.+. +++..-...=++.++++.. ++.
T Consensus         2 l~~~r~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~   77 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWT-DPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV   77 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhC-CHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence            4667899999999999996 9888 778764 3232 2112333344444344342 2232112234677776655 677


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHH-HHHHHHHHHHHHHHHHHHHh
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEE-IKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~-~~~~~e~~~~~~k~ie~yll  153 (179)
                      |+...++.    .  ...+++++|.+ ++|.++.+..|......   ... .....+....++..|++||.
T Consensus        78 ~t~~~~~~----~--~~v~~~~~~~~-~gT~ltl~~~~~~~~~~---~~~~~~~~~~Gw~~~l~~L~~~l~  138 (139)
T cd08894          78 YDHGSGPP----R--FRLTVTFEEQG-GKTRLTWRQVFPTAAER---CEKIKFGAVEGNEQTLDRLAAYLA  138 (139)
T ss_pred             EEeccCCC----c--EEEEEEEEECC-CCEEEEEEEEcCCHHHH---HHHHHhCHHHHHHHHHHHHHHHHh
Confidence            87643311    2  45788999975 67998888764311000   000 11233456677788888763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.38  E-value=5.8e-05  Score=57.00  Aligned_cols=136  Identities=14%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCc-ceeEEEEEcCCCCCceEEEEEe--ec------CceeeeeeEEEeee
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQ-AVKSIEIFEGDGGAGSIRQINV--VE------GNQVKCSKNRVDAL   75 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~-~v~sve~~eGdg~~GsvR~~~~--~~------g~~~~~~kErl~~~   75 (179)
                      +++.+..|+||+++||+++. |... +.+|.+. .+ .+.+.+.|-.+|..-.+.+  .+      .+......=++.++
T Consensus         1 ~~~~~r~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v   77 (146)
T cd08895           1 TDRLHRVIAAPPERVYRAFL-DPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL   77 (146)
T ss_pred             CEEEEEEECCCHHHHHHHHc-CHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence            35677889999999999997 9998 7888763 22 2222233333443333332  22      11112334467777


Q ss_pred             ecCcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           76 DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        76 D~~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      ++.+ ++.|+..-.+... + .....++.+++.+ ++|.++++...-+..   ..   .....+.-..++..|++||.
T Consensus        78 ~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~---~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          78 VPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG---IP---PEDCELGWQESLANLAALVE  145 (146)
T ss_pred             cCCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch---hh---hhHHHHHHHHHHHHHHHHhc
Confidence            7665 6667643222111 1 2346889998885 578888887642211   11   11344567778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.36  E-value=7.3e-05  Score=56.18  Aligned_cols=137  Identities=20%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCc-ceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQ-AVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~-~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      +..+..++||+++||+++. |... +.+|+.+ .--.++..+.|-.+|..-.+.+. .++......=++.++|+.+ ++.
T Consensus         2 ~~i~r~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~   78 (143)
T cd08900           2 FTLERTYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIV   78 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEE
Confidence            4566789999999999997 9888 7788753 11122333344344544444443 2332223344666676555 566


Q ss_pred             EEE--EecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           84 YSL--IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        84 Y~i--ieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      |+-  -.++..   ......++.+.|.+ |+|.++.+..+-..++..    ......+.-..++..|++||.
T Consensus        79 ~t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~----~~~~~~~GW~~~l~~L~~~l~  142 (143)
T cd08900          79 YTYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQGAFLDGDD----DPAGREQGTAALLDNLAAELE  142 (143)
T ss_pred             EEEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEEecccccc----hhhhHHHHHHHHHHHHHHHHh
Confidence            664  222221   12245788888985 579998887763222211    112234466677788888774

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.36  E-value=3.1e-05  Score=58.41  Aligned_cols=138  Identities=14%  Similarity=0.031  Sum_probs=81.0

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      ++.+..++||+++||+++- |... +.+|+...--.+...+.|-.+|..-.+.+. +++....+.=++.++|+.. ++.|
T Consensus         2 l~i~r~~~ap~e~Vw~a~T-dpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~   78 (142)
T cd07826           2 IVITREFDAPRELVFRAHT-DPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQ   78 (142)
T ss_pred             EEEEEEECCCHHHHHHHhC-CHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence            5667899999999999996 9888 777776432223333445445555455543 2322223344666676654 4555


Q ss_pred             EEE-ecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           85 SLI-EGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        85 ~ii-eG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      +-- ++..    -.....++++.|.+ |+|.++.+..|.....  ..........+.-...+..|++||.
T Consensus        79 t~~~~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          79 TEEFEGLP----DGVALETVTFTELG-GRTRLTATSRYPSKEA--RDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             EeEecCCC----CCceEEEEEEEECC-CCEEEEEEEEeCCHHH--HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            532 2221    12246788999975 6799988766532110  0001112345567788888988885

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=98.25  E-value=2.2e-05  Score=60.08  Aligned_cols=112  Identities=18%  Similarity=0.260  Sum_probs=84.0

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      -+++.+.-++.+|+++|+++. |... .|+.+|- -.+..+.+.++ ..-+-.++.+-++--++..=|+. +++..+++.
T Consensus         2 ~~~~~s~lv~y~a~~mF~LV~-dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~   76 (146)
T COG2867           2 PQIERTALVPYSASQMFDLVN-DVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSID   76 (146)
T ss_pred             CeeEeeeeccCCHHHHHHHHH-HHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence            357788899999999999997 9999 9999996 55666676653 22444455543332234455544 556666777


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKG  125 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~  125 (179)
                      -++++|+     ++...++|+++|-++++|.|+..++|+...
T Consensus        77 ~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s  113 (146)
T COG2867          77 MKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS  113 (146)
T ss_pred             hhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence            7778774     888899999999878899999999999865

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.23  E-value=6e-05  Score=56.04  Aligned_cols=128  Identities=16%  Similarity=0.160  Sum_probs=76.1

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeE--EEEEcCCCCCceEEEEEee--cCceeeeeeEEEeeeecCcc
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKS--IEIFEGDGGAGSIRQINVV--EGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~s--ve~~eGdg~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~   80 (179)
                      |++.++.++||+++||+++. |... +.+|+++ ...  +...+.|-.+|..-.+.+.  +|.....+.=++.++++. +
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~t-d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~   76 (133)
T cd08897           1 KITVETTVDAPIEKVWEAWT-TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-K   76 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHhC-CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-C
Confidence            46788999999999999996 9888 8899643 111  1112234345544444432  222111233455666554 4


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      ++.|+..++         ...+++++|.+ ++|.++.+  +.+.+..  ..+   ...+.-..++..|++||.
T Consensus        77 ~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~--~~~---~~~~GW~~~l~~L~~~le  132 (133)
T cd08897          77 LIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENEN--PVE---MQRQGWQAILDNFKKYVE  132 (133)
T ss_pred             EEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCC--cHH---HHHHHHHHHHHHHHHHhh
Confidence            788886322         25689999975 57888765  4433211  111   234566778888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.20  E-value=9.1e-05  Score=55.93  Aligned_cols=139  Identities=10%  Similarity=0.019  Sum_probs=76.0

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEe-ecCceeeeeeEEEeeeecCcceEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINV-VEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      +..++.|+||+++||+++. |... +.+|++..=-++...+.|-.+|..-++.+ .+++..-...=++.++|+.+ ++.|
T Consensus         2 l~i~r~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~~   78 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWT-EPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLVF   78 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcC-CHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEEE
Confidence            4567899999999999996 9888 77776531001111223323333334444 23332122345677787665 5666


Q ss_pred             E--EEec-CccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           85 S--LIEG-DVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        85 ~--iieG-~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      +  ..++ ++...+  ....+++++|.+ ++|.++.+..+....   ..+... ....+.-..++..|++||.
T Consensus        79 t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~~~~---~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          79 TDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARHWTEA---DRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEeCCHH---HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            5  3222 111111  135689999975 578888775542110   000011 0123567788888888875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.18  E-value=0.00013  Score=55.34  Aligned_cols=137  Identities=13%  Similarity=0.126  Sum_probs=74.7

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcce-------eEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecC
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAV-------KSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE   78 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v-------~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~   78 (179)
                      ++.++.|+||+++||+++. |  . +.+|++..-       ..|++   |-.+|..-.+...+|.  ....=++.++|+.
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~---d~~~GG~~~~~~~~g~--~~~~g~v~~v~p~   72 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVF---EPRAGGRWYEIGEDGT--ECEWGTVLAWEPP   72 (149)
T ss_pred             eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEE---cccCCcEEEEecCCCc--EeceEEEEEEcCC
Confidence            6788999999999999997 7  4 556654321       22332   1123322222222232  1233467777766


Q ss_pred             cceEEEEEE-ecCccc-cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           79 NFSYKYSLI-EGDVLM-DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV-LTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        79 ~~~~~Y~ii-eG~~~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~-~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      + ++.|+-. ..+... ... .-..+++++|.++++|.++.+...-...... ..........+.-..++..|++||-
T Consensus        73 ~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~  148 (149)
T cd08891          73 S-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE  148 (149)
T ss_pred             C-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence            5 5666643 211110 011 2367899999864679998887765432110 1111111223455677888888874

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.08  E-value=0.00025  Score=51.16  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecCcc
Q 044703           13 PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVL   92 (179)
Q Consensus        13 ~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~~~   92 (179)
                      +||+++||+++. |... +.+|.+.....     .+-.+|..-++ ...++......=++.++++.. .+.|+.--++..
T Consensus         1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~-----~~~~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~   71 (124)
T PF08327_consen    1 DAPPERVWEALT-DPEG-LAQWFTTSEAE-----MDFRPGGSFRF-MDPDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP   71 (124)
T ss_dssp             SSSHHHHHHHHH-SHHH-HHHHSEEEEEE-----EECSTTEEEEE-EETTSEEEEEEEEEEEEETTT-EEEEEEEEETSS
T ss_pred             CcCHHHHHHHHC-CHhH-HhhccCCCcce-----eeeecCCEEEE-EecCCCCceeeEEEEEEeCCE-EEEEEEEccCCC
Confidence            699999999997 9988 78993311222     22234443333 224333223343577787666 477775433322


Q ss_pred             ccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHH-HHHHHHHHHHHHHHHH
Q 044703           93 MDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKE-GKEKSLAMYKVVENYL  152 (179)
Q Consensus        93 ~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~-~~e~~~~~~k~ie~yl  152 (179)
                      .  -.....++.+.+ .+++|.++.+.+=.      +.....+. .......++..|.+||
T Consensus        72 ~--~~~~~v~~~~~~-~~~~T~l~~~~~~~------~~~~~~~~~~~~gw~~~l~~L~~~l  123 (124)
T PF08327_consen   72 D--GPESRVTFEFEE-EGGGTRLTLTHSGF------PDDDEEEEGMEQGWEQMLDRLKAYL  123 (124)
T ss_dssp             S--CEEEEEEEEEEE-ETTEEEEEEEEEEE------HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             C--CCceEEEEEEEE-cCCcEEEEEEEEcC------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence            1  234578899999 45678888776222      12222222 5567777888888887

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=0.0006  Score=52.22  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=75.5

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ..+++.+..|++|+++||+++. |... +.+|+.+-=.+.++.-|   .|....+...+|. .....-++.++++.. ++
T Consensus         7 ~~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g~-~~~~~~~~~~v~p~~-rI   79 (149)
T COG3832           7 DRTLEIERLIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTG---GGERVRFRGPDGP-VHSFEGEYLEVVPPE-RI   79 (149)
T ss_pred             CceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecC---CceEEeeecCCCC-eeecceEEEEEcCCc-EE
Confidence            3678889999999999999997 9887 88888621101111111   1223334433332 223455666665554 45


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHH--HHHHHHHHHHHHHHHh
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEG--KEKSLAMYKVVENYLM  153 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~--~e~~~~~~k~ie~yll  153 (179)
                      .|+-...+.-. +...-..+++++|..+|+   +++..........+.....+..  .+.-..++..++++|.
T Consensus        80 v~tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          80 VFTWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             EEEeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            55543332211 123346788888876664   3333333333322222211111  4566777777777764

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.75  E-value=0.00071  Score=50.52  Aligned_cols=129  Identities=15%  Similarity=0.100  Sum_probs=76.3

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS   85 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~   85 (179)
                      ++.++.|+||+++||+++. |... +.+|.+. -.+.++     .+|..-.+.+...++  .+.=++.++++. +.+.|+
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~-----~~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~   70 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRL-----EEGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIE   70 (136)
T ss_pred             eeEEEEecCCHHHHHHHhc-CHHH-hcccccc-CCCccc-----cCCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEE
Confidence            4678899999999999996 9888 7776543 223332     233333455543322  222356667544 577787


Q ss_pred             EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH---HHHHHHHHHHHHHHHHHhcC
Q 044703           86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK---EGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~---~~~e~~~~~~k~ie~yll~n  155 (179)
                      -..++    +.  -..++++.+.++|+|.++.+-..-+..    .++..+   ...+.-..++..|++||...
T Consensus        71 w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g  133 (136)
T cd08901          71 WGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG  133 (136)
T ss_pred             ecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            64322    12  347889999865678888775533211    111111   11234567788888888654

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.60  E-value=0.0047  Score=45.54  Aligned_cols=122  Identities=14%  Similarity=0.124  Sum_probs=69.1

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS   85 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~   85 (179)
                      ++.+..|+||+++||+++- |... +.+|+.. ..+.+...|    |..+   +.+|.    +.=++.++++. +.+.|+
T Consensus         2 i~~~r~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~-~~l~~~   66 (126)
T cd08892           2 ISLTETFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPG-KKIVQK   66 (126)
T ss_pred             eEEEEEECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCC-CEEEEE
Confidence            5678899999999999996 9888 7788753 223332222    3333   33332    23356667644 456665


Q ss_pred             EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHH-HHHHHHHHHH
Q 044703           86 LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSL-AMYKVVENYL  152 (179)
Q Consensus        86 iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~-~~~k~ie~yl  152 (179)
                      ---.+...  -..-..++.+++. +++|.++.+....+..      . .+...+.-. .++..|.++|
T Consensus        67 w~~~~~~~--~~~s~v~~~l~~~-~~gT~ltl~~~g~~~~------~-~~~~~~GW~~~~~~~l~~~~  124 (126)
T cd08892          67 WRFKSWPE--GHYSTVTLTFTEK-DDETELKLTQTGVPAG------E-EERTREGWERYYFESIKQTF  124 (126)
T ss_pred             EEcCCCCC--CCcEEEEEEEEEC-CCCEEEEEEEECCCCc------h-HHHHHhhHHHHHHHHHHHHh
Confidence            43222110  1224578888887 4578877776644321      1 112233333 4667777665

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=97.42  E-value=0.021  Score=47.32  Aligned_cols=146  Identities=12%  Similarity=0.092  Sum_probs=87.0

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCC-CCceEEEEEeec---CceeeeeeEEEee--eecC
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG-GAGSIRQINVVE---GNQVKCSKNRVDA--LDLE   78 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg-~~GsvR~~~~~~---g~~~~~~kErl~~--~D~~   78 (179)
                      .+..+..+++|++++|+++. |... -++|.+. ..++++++.-+ ..+ +-.+.+..   -.+-..+.-+-..  .+..
T Consensus        78 ~fk~e~~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~  153 (235)
T cd08873          78 SFCVELKVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDG  153 (235)
T ss_pred             EEEEEEEecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence            46777889999999999997 9999 8999984 88999887322 223 22333221   1111111111111  1222


Q ss_pred             c-ceEEEEEEe-cCc-cc---cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703           79 N-FSYKYSLIE-GDV-LM---DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        79 ~-~~~~Y~iie-G~~-~~---~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yl  152 (179)
                      + ..+..+-+. .-. ..   .....+.+-+.+.|.++|+|.|+.....+|.--.=.. ..+..+-..+...|++-++||
T Consensus       154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~-~~~~~~~~~~~~~~~~~~~~~  232 (235)
T cd08873         154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVT-CNLAGLSALYCRTFHCCEQFL  232 (235)
T ss_pred             CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceee-ecchhhhHHHHHHHHHHHHHh
Confidence            2 222333233 111 10   1256778999999998889999999888874311011 122234456778889999998


Q ss_pred             hcC
Q 044703          153 MQN  155 (179)
Q Consensus       153 l~n  155 (179)
                      ..|
T Consensus       233 ~~~  235 (235)
T cd08873         233 VTN  235 (235)
T ss_pred             ccC
Confidence            765

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.39  E-value=0.0026  Score=47.60  Aligned_cols=123  Identities=12%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             EcCCHHHHHHHhhhccCcccccc-cCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEecC
Q 044703           12 SPISPARLFKALIVDSHNLIPKL-MPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGD   90 (179)
Q Consensus        12 i~apa~kvW~~~~~d~~~llp~~-~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iieG~   90 (179)
                      ++||+++||+++- |... +.+| .+. ...++.     .+|..-.  +-.+.    +.=++.++|+.. ++.|+---.+
T Consensus         1 f~ap~e~Vw~A~T-dp~~-l~~w~~~~-~~~~d~-----~~GG~f~--~~~~~----~~G~~~ev~pp~-rlv~tw~~~~   65 (132)
T PTZ00220          1 FYVPPEVLYNAFL-DAYT-LTRLSLGS-PAEMDA-----KVGGKFS--LFNGS----VEGEFTELEKPK-KIVQKWRFRD   65 (132)
T ss_pred             CCCCHHHHHHHHc-CHHH-HHHHhcCC-CccccC-----CcCCEEE--EecCc----eEEEEEEEcCCC-EEEEEEecCC
Confidence            4799999999996 9887 7777 431 212221     2333222  22221    223566676665 4444432121


Q ss_pred             ccccceeeEEEEEEeeecCCCCceEEEEEE-EEEcCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q 044703           91 VLMDKLEKISYDVKFEPTADGGSKNTMTST-YYTKGNIVLTEEEIKEGKEKSLA-MYKVVENYL  152 (179)
Q Consensus        91 ~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~-ye~~~~~~~~~~~~~~~~e~~~~-~~k~ie~yl  152 (179)
                      ..+...  -..|++++|.++|+|.++.+.. +........ ....+...+.-.. ++..|++||
T Consensus        66 ~~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~-~~~~~~~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         66 WEEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGN-GGCLERCRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCC-CchhhHHHhChHHHHHHHHHHHh
Confidence            111112  2588999997667888888877 432221110 0001122344455 688888876

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=97.20  E-value=0.038  Score=44.74  Aligned_cols=121  Identities=12%  Similarity=-0.054  Sum_probs=72.8

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-c--C--ceeeeeeEEEeeeecCcc
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-E--G--NQVKCSKNRVDALDLENF   80 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~--g--~~~~~~kErl~~~D~~~~   80 (179)
                      +..+.++++|++++|+++. |... .++|.+ .++++++++.-+.--.+-.+.+. +  .  .+-..+.-+-...++.+.
T Consensus        47 ~~ge~~v~as~~~v~~ll~-D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~  123 (205)
T cd08874          47 FLGAGVIKAPLATVWKAVK-DPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS  123 (205)
T ss_pred             EEEEEEEcCCHHHHHHHHh-Ccch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence            4467789999999999997 9999 899998 69999998753211133333322 1  1  111122222111222332


Q ss_pred             eEEEEEEec-Cccc-----cceeeEEEEEEeeec---CCCCceEEEEEEEEEcCCCCC
Q 044703           81 SYKYSLIEG-DVLM-----DKLEKISYDVKFEPT---ADGGSKNTMTSTYYTKGNIVL  129 (179)
Q Consensus        81 ~~~Y~iieG-~~~~-----~~~~~y~~ti~v~p~---~~g~s~v~W~~~ye~~~~~~~  129 (179)
                      .+.-+-+.- ..+.     .....+.+-+.++|.   ++|.|.++..+..+|.+++-|
T Consensus       124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP  181 (205)
T cd08874         124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP  181 (205)
T ss_pred             EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence            232222222 1111     124567788999998   777899999999999855444

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=96.95  E-value=0.089  Score=42.32  Aligned_cols=145  Identities=14%  Similarity=0.063  Sum_probs=83.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec----Cceeeeee-EEEeeeecC
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE----GNQVKCSK-NRVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~----g~~~~~~k-Erl~~~D~~   78 (179)
                      ..+..+..|++|++.+.+++. |.+. .|+|.|. ..+.+.++..+..-.+-.+.+..    ....-.+. -.++.+| +
T Consensus        46 ~~~k~e~~i~~~~~~~~~vl~-d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-~  121 (215)
T cd08877          46 LSLRMEGEIDGPLFNLLALLN-EVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-E  121 (215)
T ss_pred             EEEEEEEEecCChhHeEEEEe-hhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-c
Confidence            456778899999999999997 9977 9999996 44555554332111222222210    11100111 1122232 3


Q ss_pred             cceEEEEE--EecC----------ccccc-----eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHH
Q 044703           79 NFSYKYSL--IEGD----------VLMDK-----LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEK  140 (179)
Q Consensus        79 ~~~~~Y~i--ieG~----------~~~~~-----~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~  140 (179)
                      +..+....  +..+          ++..+     ...+.+-+.++|.++++|.+++.+..+|.+..-| .-.+ ..+++.
T Consensus       122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP-~~liN~~~k~~  200 (215)
T cd08877         122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVP-KSLLNFVARKF  200 (215)
T ss_pred             CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCC-HHHHHHHHHHH
Confidence            33332221  1110          11111     3667788899999888999999988887766233 3333 345566


Q ss_pred             HHHHHHHHHHHHh
Q 044703          141 SLAMYKVVENYLM  153 (179)
Q Consensus       141 ~~~~~k~ie~yll  153 (179)
                      +-.++++|.+-+.
T Consensus       201 ~~~~~~~l~k~~~  213 (215)
T cd08877         201 AGLLFEKIQKAAK  213 (215)
T ss_pred             HHHHHHHHHHHHh
Confidence            7788888776553

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=96.70  E-value=0.24  Score=39.89  Aligned_cols=143  Identities=10%  Similarity=-0.012  Sum_probs=78.8

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCc-ccccccCcceeEEEEEcCC-CCCceEEEEEee-c-Cc---eeeee-eEEEeeeec
Q 044703            6 VTDEYTSPISPARLFKALIVDSHN-LIPKLMPQAVKSIEIFEGD-GGAGSIRQINVV-E-GN---QVKCS-KNRVDALDL   77 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~-llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~-~-g~---~~~~~-kErl~~~D~   77 (179)
                      +..+..++++++++++.+. |..+ .-++|.+. +.++++++.- +.. .|-.+... + ++   +-..+ .......++
T Consensus        48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d  124 (208)
T cd08903          48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDV-SVCRTVTPSAAMKIISPRDFVDVVLVKRYED  124 (208)
T ss_pred             EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCE-EEEEEecchhcCCCcCCCceEEEEEEEecCC
Confidence            5677889999999999996 7754 12799984 8888887643 221 22222222 1 11   00111 112122333


Q ss_pred             CcceEEEEEEecCccc---cceee----EEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHH
Q 044703           78 ENFSYKYSLIEGDVLM---DKLEK----ISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVE  149 (179)
Q Consensus        78 ~~~~~~Y~iieG~~~~---~~~~~----y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie  149 (179)
                      ....+.+..++-+-.+   ..+.-    ....++..|.++++|.++|.+..+|++..|  .-.+ ..+.+....+++.+.
T Consensus       125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP--~~lvn~~~~~~~~~~~~~Lr  202 (208)
T cd08903         125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLP--QTVVDSFFPASMAEFYNNLT  202 (208)
T ss_pred             ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcC--HHHHHHHhhHHHHHHHHHHH
Confidence            3333344333332211   11111    234555556566789999999999876543  3333 334456677888887


Q ss_pred             HHHh
Q 044703          150 NYLM  153 (179)
Q Consensus       150 ~yll  153 (179)
                      .+|.
T Consensus       203 ~~~~  206 (208)
T cd08903         203 KAVK  206 (208)
T ss_pred             HHHh
Confidence            7774

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=96.65  E-value=0.17  Score=42.04  Aligned_cols=144  Identities=13%  Similarity=0.059  Sum_probs=80.4

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecC-cee---eeeeEEEeeeecCc
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEG-NQV---KCSKNRVDALDLEN   79 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g-~~~---~~~kErl~~~D~~~   79 (179)
                      .+..+..+++|++++++++. |... .++|.+. +.++++++-- ..- .+..+...+- ++.   ..+.-+-..-+.++
T Consensus        82 ~fK~e~~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~  157 (240)
T cd08913          82 SFKVEMVVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN  157 (240)
T ss_pred             EEEEEEEEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence            35567789999999999996 9999 9999985 8899987643 222 2554443321 110   11111111111122


Q ss_pred             c---eEEEEEEe-cCccc-c---ceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHH-HHHHHHHHHH
Q 044703           80 F---SYKYSLIE-GDVLM-D---KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKE-KSLAMYKVVE  149 (179)
Q Consensus        80 ~---~~~Y~iie-G~~~~-~---~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e-~~~~~~k~ie  149 (179)
                      .   .+..+.+. .+.++ .   ...++.+-+.+.|.+++.|.+++...-+|  | ..|.-.. ..+.+ .+...+.+-.
T Consensus       158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G-~LP~~~~N~~~~~~p~~~~~~~~~  234 (240)
T cd08913         158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--G-VLPYISTDIAGLSSEFYSTFSACS  234 (240)
T ss_pred             CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--c-cccHHHhhhhhhccchhHHHHHHH
Confidence            2   12222222 22211 0   14556788999999888899988665554  3 2333222 22222 3456667777


Q ss_pred             HHHhcC
Q 044703          150 NYLMQN  155 (179)
Q Consensus       150 ~yll~n  155 (179)
                      ++|++|
T Consensus       235 ~~~~~~  240 (240)
T cd08913         235 QFLLDN  240 (240)
T ss_pred             HHhhcC
Confidence            777654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=96.51  E-value=0.2  Score=40.32  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=81.0

Q ss_pred             EEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEeec-Cce---eeeeeEEEeeeecCc
Q 044703            6 VTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVE-GNQ---VKCSKNRVDALDLEN   79 (179)
Q Consensus         6 v~~ei~i~apa~kvW-~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~~-g~~---~~~~kErl~~~D~~~   79 (179)
                      +..+..+++|+++++ .++ .|... .++|.+. +.++++++--+.-=. ++.+.... ++.   -..+.-|...-++.+
T Consensus        51 ~k~e~~i~~~~~~l~~~l~-~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~  127 (209)
T cd08905          51 FRLEVVVDQPLDNLYSELV-DRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST  127 (209)
T ss_pred             EEEEEEecCCHHHHHHHHH-hchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence            456788999999999 666 48888 8999984 778887754321001 22222211 111   011211212222333


Q ss_pred             ceEEEEEEecCccc--c---ceeeEEEEEEeeecCC--CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703           80 FSYKYSLIEGDVLM--D---KLEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENY  151 (179)
Q Consensus        80 ~~~~Y~iieG~~~~--~---~~~~y~~ti~v~p~~~--g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~y  151 (179)
                      ..+.....+-+.++  .   ....+.+-+.++|.++  ++|.++|.+-.+|++..  |.-.+ ..+.+.....++.|.++
T Consensus       128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P~~lvN~~~~~~~~~~~~~Lr~~  205 (209)
T cd08905         128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRQR  205 (209)
T ss_pred             EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--CHHHHHHHhHHhHHHHHHHHHHH
Confidence            22211112222211  0   1445567788999865  78999999999988763  33333 34456667778887777


Q ss_pred             Hh
Q 044703          152 LM  153 (179)
Q Consensus       152 ll  153 (179)
                      +.
T Consensus       206 ~~  207 (209)
T cd08905         206 MA  207 (209)
T ss_pred             Hh
Confidence            65

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=96.36  E-value=0.31  Score=37.27  Aligned_cols=142  Identities=17%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCcee---eeeeEEEeeeecCcc
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQV---KCSKNRVDALDLENF   80 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~---~~~kErl~~~D~~~~   80 (179)
                      ..+..+..+++|++.+|+++. |... .++|-|. +.++++++..+..-.+....+....+.   ..+--+-...++++.
T Consensus        39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~  115 (193)
T cd00177          39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT  115 (193)
T ss_pred             eeEEEEEEECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence            345677889999999999997 8777 8899984 888888875432234444444432210   111111111222222


Q ss_pred             -eEEEEEEecCccc---ccee--eEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHH
Q 044703           81 -SYKYSLIEGDVLM---DKLE--KISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVEN  150 (179)
Q Consensus        81 -~~~Y~iieG~~~~---~~~~--~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~  150 (179)
                       .+...=++.+..+   ..+.  .+.+-+.++|.++++|.+++.+..++.+..|  .-.+ ..+.+....+.+.+..
T Consensus       116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP--~~~~~~~~~~~~~~~~~~~~~  190 (193)
T cd00177         116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP--KSLVNSAAKKQLASFLKDLRK  190 (193)
T ss_pred             EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc--HHHHHhhhhhccHHHHHHHHH
Confidence             2222222221111   1122  2345677889988899999999999887542  3232 3333444555555443

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=96.22  E-value=0.48  Score=38.01  Aligned_cols=144  Identities=15%  Similarity=0.019  Sum_probs=81.8

Q ss_pred             EEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEee-c--CceeeeeeEEEeeee-cC
Q 044703            5 TVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVV-E--GNQVKCSKNRVDALD-LE   78 (179)
Q Consensus         5 ~v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~-~--g~~~~~~kErl~~~D-~~   78 (179)
                      .+..+.++ ++|++.+++++. |... .++|.+. +.+.++++-++..|+ |-.+.+. +  -.+-..+--|-.-.| +.
T Consensus        51 ~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~  127 (209)
T cd08870          51 EYLVRGVFEDCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR  127 (209)
T ss_pred             EEEEEEEEcCCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence            45566677 679999999997 9887 8999985 667777665432121 2222221 1  111012222222223 33


Q ss_pred             cceEEEEEEecCccc----cceeeEEEEEEeeec--CCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703           79 NFSYKYSLIEGDVLM----DKLEKISYDVKFEPT--ADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENY  151 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~----~~~~~y~~ti~v~p~--~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~y  151 (179)
                      ...+....+.-+..+    ..+..|.+.+.++|.  ++++|.+.++..-.|.+.  .|.-.+ ..++..+.++++.|...
T Consensus       128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~a  205 (209)
T cd08870         128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLENA  205 (209)
T ss_pred             EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHHH
Confidence            333322222221111    137789999999998  666788888866665433  444443 34455667888888776


Q ss_pred             Hh
Q 044703          152 LM  153 (179)
Q Consensus       152 ll  153 (179)
                      +.
T Consensus       206 ~~  207 (209)
T cd08870         206 LR  207 (209)
T ss_pred             Hh
Confidence            64

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=96.20  E-value=0.48  Score=37.83  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=79.5

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecC-cee---eeeeEEEeeeecCcc
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEG-NQV---KCSKNRVDALDLENF   80 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g-~~~---~~~kErl~~~D~~~~   80 (179)
                      +..+..+++|+++++..+-.|.+. .++|.+. +..+++++.- +.---+........ .+.   ..+--|-...++...
T Consensus        50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~  127 (208)
T cd08868          50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY  127 (208)
T ss_pred             EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence            556778999999998644348888 8999995 7777776543 21111121221111 110   111112111222222


Q ss_pred             eEEEEEEecCccc--c---ceeeEEEEEEeeecCC--CCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           81 SYKYSLIEGDVLM--D---KLEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        81 ~~~Y~iieG~~~~--~---~~~~y~~ti~v~p~~~--g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      .+...-++-+-.+  .   ....+.+.+.++|.++  ++|.++|.+..+|.+..|.  -.+ ..+......+++++..++
T Consensus       128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~--~lvN~~~~~~~~~~~~~Lr~~~  205 (208)
T cd08868         128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQ--YLVDQALASVLLDFMKHLRKRI  205 (208)
T ss_pred             EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcc--eeeehhhHHHHHHHHHHHHHHH
Confidence            2222223311111  1   1344557788888754  5799999999998875432  122 234566778888888877


Q ss_pred             hc
Q 044703          153 MQ  154 (179)
Q Consensus       153 l~  154 (179)
                      .+
T Consensus       206 ~~  207 (208)
T cd08868         206 AT  207 (208)
T ss_pred             hh
Confidence            53

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=96.19  E-value=0.4  Score=36.73  Aligned_cols=91  Identities=16%  Similarity=0.259  Sum_probs=57.8

Q ss_pred             CHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEEEEe-cCccc
Q 044703           15 SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIE-GDVLM   93 (179)
Q Consensus        15 pa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~iie-G~~~~   93 (179)
                      ..+++|.-+...... -....| .+.+|++++.++. --.|.++|+.+    .++|++. +++ ..++.|.+-. |+.  
T Consensus        18 Tr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~-~~~v~f~~~~~g~~--   86 (141)
T cd08863          18 TRAQLWRGLVLRARE-PQLFVP-GLDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEP-PSRVHFLQADAGGT--   86 (141)
T ss_pred             CHHHHHhHHHhhhCC-chhccc-ccceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecC-CcEEEEEecCCCCe--
Confidence            356999988744443 224556 5899999977643 46799999875    7999977 444 4477888766 321  


Q ss_pred             cceeeEEEEEEeeecCCCCceEEEEEEEEEcC
Q 044703           94 DKLEKISYDVKFEPTADGGSKNTMTSTYYTKG  125 (179)
Q Consensus        94 ~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~  125 (179)
                             .++.+....+|  -.-.++.|+...
T Consensus        87 -------l~~~iee~~~g--~L~lrf~ye~~~  109 (141)
T cd08863          87 -------LTNTIEEPEDG--ALYLRFVYETTL  109 (141)
T ss_pred             -------EEEEeccCCCC--cEEEEEEEEecC
Confidence                   23333333233  366677777743

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=96.07  E-value=0.3  Score=37.63  Aligned_cols=99  Identities=14%  Similarity=0.214  Sum_probs=52.7

Q ss_pred             EEEEEEEcCCH--------HHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeec
Q 044703            6 VTDEYTSPISP--------ARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDL   77 (179)
Q Consensus         6 v~~ei~i~apa--------~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~   77 (179)
                      +++.+.||-|.        ++||+-+..-..+ -..+.| .+.+|++++.. ..+-.|.++|  |+  ..++|++.. .+
T Consensus         2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~f--g~--~~v~E~v~~-~~   73 (149)
T PF08982_consen    2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTF--GG--ATVRERVTL-YP   73 (149)
T ss_dssp             EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEE--TT--EEEEEEEEE-ET
T ss_pred             ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEE--CC--cEEEEEEEE-eC
Confidence            45566665554        5799998733333 225667 58999998765 3467899999  33  389999774 44


Q ss_pred             CcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc
Q 044703           78 ENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK  124 (179)
Q Consensus        78 ~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~  124 (179)
                      . .++.|....|       ++  -++.+...++  .-+-.++.|+-.
T Consensus        74 ~-~~V~f~~~~G-------s~--lt~~I~e~~~--g~L~ltf~ye~~  108 (149)
T PF08982_consen   74 P-ERVDFAQHDG-------SS--LTNIISEPEP--GDLFLTFTYEWR  108 (149)
T ss_dssp             T-TEEEESSSBE-------EE--EEEEEEEEET--TEEEEEEEEEEE
T ss_pred             C-cEEEEEcCCC-------CE--EEEEEecCCC--CcEEEEEEEEec
Confidence            4 4677722111       22  3333333223  266666677764

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=96.05  E-value=0.4  Score=39.75  Aligned_cols=116  Identities=15%  Similarity=0.054  Sum_probs=66.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--Ccee-eeee--EEEeeeecC
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GNQV-KCSK--NRVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~~~-~~~k--Erl~~~D~~   78 (179)
                      ..+..+..+++|++++++++. |... .++|.++ +.++++++.-+.---|..+.-.+  ..+. ..+.  -+....++.
T Consensus        78 l~fk~e~~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg  154 (236)
T cd08914          78 LSVWVEKHVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG  154 (236)
T ss_pred             EEEEEEEEEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence            356778899999999999997 9999 9999985 88888876432111255554222  1110 1111  111111122


Q ss_pred             c-ceEE-EEEEecCccc-c---ceee-EEEEEEeeecCCCCceEEEEEEEEE
Q 044703           79 N-FSYK-YSLIEGDVLM-D---KLEK-ISYDVKFEPTADGGSKNTMTSTYYT  123 (179)
Q Consensus        79 ~-~~~~-Y~iieG~~~~-~---~~~~-y~~ti~v~p~~~g~s~v~W~~~ye~  123 (179)
                      + ..+. .++..--+++ .   .... ..+- .+.|.++++|.|+....-+|
T Consensus       155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP  205 (236)
T cd08914         155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA  205 (236)
T ss_pred             CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence            1 2222 2232201111 1   1334 3344 78899888999999998888

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=95.82  E-value=0.78  Score=37.04  Aligned_cols=142  Identities=9%  Similarity=-0.012  Sum_probs=77.6

Q ss_pred             EEEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEeec-Ccee---eeeeEEEeeeecC
Q 044703            5 TVTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVE-GNQV---KCSKNRVDALDLE   78 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW-~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~~-g~~~---~~~kErl~~~D~~   78 (179)
                      .+..+..+++|++++| .++. |... .++|.+. +.++++++.-+.--. ++.++... +++.   ..+.-|--.-+..
T Consensus        50 ~fk~~~~v~~~~~~l~~~ll~-D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~  126 (209)
T cd08906          50 TFILKAFMQCPAELVYQEVIL-QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD  126 (209)
T ss_pred             EEEEEEEEcCCHHHHHHHHHh-Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence            3567788999999998 5786 9999 8999985 888888764321011 12222221 1211   1222222222222


Q ss_pred             c-ceEEEEEEecCccccceeeE-------EEEEEeee-cCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703           79 N-FSYKYSLIEGDVLMDKLEKI-------SYDVKFEP-TADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV  148 (179)
Q Consensus        79 ~-~~~~Y~iieG~~~~~~~~~y-------~~ti~v~p-~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i  148 (179)
                      + -.+..++. -+..+ +.+.|       .+-+-..| .++++|.++|.+..+|.+..|  .-.+ ..+.+.....++.+
T Consensus       127 ~~i~~~~sv~-~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP--~~lvN~~~~~~~~~~~~~L  202 (209)
T cd08906         127 RYVSAGISTT-HSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLP--RYLIHQSLAATMFEFASHL  202 (209)
T ss_pred             cEEEEEEEEe-cCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence            2 12233332 22211 12222       22333333 456789999999999988533  3232 44555667777777


Q ss_pred             HHHHh
Q 044703          149 ENYLM  153 (179)
Q Consensus       149 e~yll  153 (179)
                      .+++.
T Consensus       203 R~~~~  207 (209)
T cd08906         203 RQRIR  207 (209)
T ss_pred             HHHHh
Confidence            77764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.6  Score=35.61  Aligned_cols=139  Identities=13%  Similarity=0.053  Sum_probs=83.6

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeec-Cce-eeeeeEEEee--eecC
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVE-GNQ-VKCSKNRVDA--LDLE   78 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~-g~~-~~~~kErl~~--~D~~   78 (179)
                      ++......|+||.|.||+..+ ..++ +..+-|..+  |-.-+|+ -+.|+-....+.+ |.+ -..++-|.++  .|+-
T Consensus         2 ~tF~~~~~i~aP~E~VWafhs-rpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~   77 (153)
T COG4276           2 GTFVYRTTITAPHEMVWAFHS-RPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG   77 (153)
T ss_pred             cceEEeeEecCCHHHHhhhhc-CccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence            456677799999999999997 7777 556676522  2222443 2344433333322 222 1356777776  6655


Q ss_pred             cceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703           79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-VLTEEEIKEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-~~~~~~~~~~~e~~~~~~k~ie~yl  152 (179)
                      . +++-..+.|+...  + +...+-++.+.+ |+|++.=++.|+...+. ..--.+ ....-....||+.-+.-+
T Consensus        78 ~-~FtDv~i~gPfp~--~-~WrHtH~F~~eg-g~TvliD~Vsye~p~g~~~~~~g~-~l~q~~l~~mFr~Rhs~l  146 (153)
T COG4276          78 S-RFTDVCITGPFPA--L-NWRHTHNFVDEG-GGTVLIDSVSYELPAGTLTGMFGY-RLTQLILDLMFRSRHSTL  146 (153)
T ss_pred             c-eeeeeeecCCccc--e-eeEEEeeeecCC-CcEEEEeeEEeeccCcceechhhh-hhHHHHHHHHHHHHHHHH
Confidence            4 5666677776542  2 578888998875 47999999999986541 111111 112224567777655444

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=95.38  E-value=1.2  Score=36.00  Aligned_cols=147  Identities=10%  Similarity=-0.014  Sum_probs=81.6

Q ss_pred             EEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCce---eeeeeEEEeeeecCcce
Q 044703            6 VTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLENFS   81 (179)
Q Consensus         6 v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~~   81 (179)
                      +..+..+ ++|++.+++++. |... .++|.|. +..+++++.-+.--.|..+.+..--+   -..+--|...-++....
T Consensus        49 ~k~~~~~~~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v  125 (222)
T cd08871          49 IKVSAIFPDVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI  125 (222)
T ss_pred             EEEEEEeCCCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence            4455666 799999999996 9877 7899995 66667665432112333333321111   01222222212221112


Q ss_pred             EEEEEEecC-ccc-cc---eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 044703           82 YKYSLIEGD-VLM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        82 ~~Y~iieG~-~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll~n  155 (179)
                      +...-++-+ .+. .+   ...+.+-+.++|.++++|.++|.+..++.+..  |.-.+ ..+......++++|...+.+-
T Consensus       126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I--P~~lvN~~~~~~~~~~l~~l~k~~~~y  203 (222)
T cd08871         126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL--PKWVVNKATTKLAPKVMKKLHKAALKY  203 (222)
T ss_pred             EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc--CHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            211111111 110 11   23456677889988888999999888887753  33333 333445668888888877776


Q ss_pred             cc
Q 044703          156 PE  157 (179)
Q Consensus       156 ~d  157 (179)
                      ++
T Consensus       204 ~~  205 (222)
T cd08871         204 PE  205 (222)
T ss_pred             HH
Confidence            63

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=95.11  E-value=1.4  Score=35.38  Aligned_cols=144  Identities=11%  Similarity=0.019  Sum_probs=80.3

Q ss_pred             EEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCce-EEEEEeecCcee---eeeeEEEeeeecCc
Q 044703            5 TVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGS-IRQINVVEGNQV---KCSKNRVDALDLEN   79 (179)
Q Consensus         5 ~v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~Gs-vR~~~~~~g~~~---~~~kErl~~~D~~~   79 (179)
                      .+..+..+ ++|++.+.+++. |... .++|.+. +.++++++.+...|+ +-.+.+.---+.   ..+--|-...|+++
T Consensus        46 ~~k~~~~~~d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~  122 (207)
T cd08911          46 EYKVYGSFDDVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN  122 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence            35555556 999999999997 9987 8999985 777888875422222 222222110010   13333333455555


Q ss_pred             ceE--EEEEEec-Cccc----cceeeEEEEEEeeecC---CCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703           80 FSY--KYSLIEG-DVLM----DKLEKISYDVKFEPTA---DGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV  148 (179)
Q Consensus        80 ~~~--~Y~iieG-~~~~----~~~~~y~~ti~v~p~~---~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i  148 (179)
                      ..+  ...-++- ..+.    -.+.+|.+.+.++|.+   +++|.+.++.-  -.++...|.-.+ ..+.....++++.|
T Consensus       123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~--~dPgG~IP~~lvN~~~~~~~~~~l~~l  200 (207)
T cd08911         123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYF--DNPGVNIPSYITSWVAMSGMPDFLERL  200 (207)
T ss_pred             CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEE--eCCCCccCHHHHHHHHHhhccHHHHHH
Confidence            432  1111221 1110    1267889999999874   45777765543  344333444343 33445666777777


Q ss_pred             HHHHh
Q 044703          149 ENYLM  153 (179)
Q Consensus       149 e~yll  153 (179)
                      ...++
T Consensus       201 ~~a~~  205 (207)
T cd08911         201 RNAAL  205 (207)
T ss_pred             HHHHh
Confidence            76654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=94.37  E-value=2.1  Score=34.05  Aligned_cols=118  Identities=12%  Similarity=0.055  Sum_probs=68.1

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--Cc-eeeeeeEEEeeeecCc--c
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GN-QVKCSKNRVDALDLEN--F   80 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~-~~~~~kErl~~~D~~~--~   80 (179)
                      +..+..+++++++|++.+. |..   ++|.+. +.++++++--+.-=.|-...+..  .. +-..+--|.-..+.++  .
T Consensus        46 ~K~~~~v~a~~~~v~~~l~-d~r---~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~  120 (197)
T cd08869          46 WRASTEVEAPPEEVLQRIL-RER---HLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC  120 (197)
T ss_pred             EEEEEEeCCCHHHHHHHHH-HHH---hccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence            4778899999999999886 643   699985 77788776432101122222211  11 1112222222223333  2


Q ss_pred             eEEEEEEec--Cccccc--eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC
Q 044703           81 SYKYSLIEG--DVLMDK--LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV  128 (179)
Q Consensus        81 ~~~Y~iieG--~~~~~~--~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~  128 (179)
                      .+..+-++-  .+++..  ...+.+-+.++|.++++|.+++.+..+|.+..|
T Consensus       121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP  172 (197)
T cd08869         121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP  172 (197)
T ss_pred             EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence            223332321  111111  345667888999988899999999999987654

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=94.21  E-value=2.1  Score=33.53  Aligned_cols=145  Identities=17%  Similarity=0.017  Sum_probs=82.6

Q ss_pred             EEEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC-cee---eeeeE-EEeeeecC
Q 044703            5 TVTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-NQV---KCSKN-RVDALDLE   78 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW-~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g-~~~---~~~kE-rl~~~D~~   78 (179)
                      .+..+..++++++++. .++. |... .++|.+. +.++++++-...-..|..+....- ++.   ..+-- +....++.
T Consensus        46 ~~k~~~~v~~~~~~~~~~~~~-d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~  122 (206)
T smart00234       46 ASRAVGVVPMVCADLVEELMD-DLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG  122 (206)
T ss_pred             EEEEEEEEecChHHHHHHHHh-cccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence            4566778899999744 5664 8887 8999985 777887754321134555443321 121   11111 11212223


Q ss_pred             cceEEEEEEecCccc---c--ceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           79 NFSYKYSLIEGDVLM---D--KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~---~--~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      ...+..+-++.+-.+   .  -...+.+-+.++|.+++.|.++|....++.+..|  .-++ ..+......+++.+-++|
T Consensus       123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP--~~lvn~~~~~~~~~~~~~~~~~~  200 (206)
T smart00234      123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLP--HWLVRSLIKSGLAEFAKTWVATL  200 (206)
T ss_pred             cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCcc--ceeehhhhhhhHHHHHHHHHHHH
Confidence            333333222222111   0  1346778899999988889999999988887542  2222 334445667777776666


Q ss_pred             hc
Q 044703          153 MQ  154 (179)
Q Consensus       153 l~  154 (179)
                      ..
T Consensus       201 ~~  202 (206)
T smart00234      201 QK  202 (206)
T ss_pred             HH
Confidence            54

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=94.17  E-value=2  Score=33.00  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             EEEEEEcCCHHHHHHHhhhccCccccc---ccCc---ceeEEEEEcCCCCCceEEEE-Eeec-Cce---------eeeee
Q 044703            7 TDEYTSPISPARLFKALIVDSHNLIPK---LMPQ---AVKSIEIFEGDGGAGSIRQI-NVVE-GNQ---------VKCSK   69 (179)
Q Consensus         7 ~~ei~i~apa~kvW~~~~~d~~~llp~---~~P~---~v~sve~~eGdg~~GsvR~~-~~~~-g~~---------~~~~k   69 (179)
                      +.++++++|+++||+++. |-.- +..   -+..   .+.+++ .+|+|  -+++.- .+.. ..|         .-.++
T Consensus         2 ~~~~~~~~~~~~v~~~~~-d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~   76 (159)
T PF10698_consen    2 EHSVEYPAPVERVWAAFT-DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT   76 (159)
T ss_pred             eEEEEcCCCHHHHHHHHc-CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence            567899999999999997 5432 222   2211   233333 22332  111111 1111 111         01222


Q ss_pred             EEEeee---ecCcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc
Q 044703           70 NRVDAL---DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK  124 (179)
Q Consensus        70 Erl~~~---D~~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~  124 (179)
                       +.+.+   ++..++.+|++--.+.    --+..+++.+.|. +++|.+.+..+....
T Consensus        77 -~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~-~~gt~~~~~g~v~v~  128 (159)
T PF10698_consen   77 -RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPD-GGGTRLTVEGEVKVK  128 (159)
T ss_pred             -EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence             22434   6677777777643332    2347899999995 457999999999985

The function is not known.

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=93.54  E-value=3.1  Score=33.40  Aligned_cols=141  Identities=16%  Similarity=0.019  Sum_probs=76.9

Q ss_pred             EEEEEEEEc-CCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC-----ceeeeeeEEEeeeecC
Q 044703            5 TVTDEYTSP-ISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-----NQVKCSKNRVDALDLE   78 (179)
Q Consensus         5 ~v~~ei~i~-apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g-----~~~~~~kErl~~~D~~   78 (179)
                      .+..+..++ ++++.+++++. |... .++|.+... ++.-.+.++.  .|-.+.+..-     ...-..+.+ ...|..
T Consensus        50 ~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~~~-~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~-~~~~~~  123 (207)
T cd08910          50 EYKVFGVLEDCSPSLLADVYM-DLEY-RKQWDQYVK-ELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQR-RDLDVE  123 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHHHHH-hheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEe-ccccCC
Confidence            455667787 79999999996 9888 889998644 4321122221  2333333211     001112222 234444


Q ss_pred             cceEEE---EEEecCccc-----cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHH
Q 044703           79 NFSYKY---SLIEGDVLM-----DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVE  149 (179)
Q Consensus        79 ~~~~~Y---~iieG~~~~-----~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie  149 (179)
                      +..+..   ..++-+-.+     -....|.+.+.++|.++++|.+++...-+|.+.  .|.-.+ ..++.....++++|.
T Consensus       124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wlvN~~~~~~~~~~l~~l~  201 (207)
T cd08910         124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWLINWAAKNGVPNFLKDMQ  201 (207)
T ss_pred             CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHHHHHHHHHhhHHHHHHHH
Confidence            432211   111111100     126788999999998777888888766666443  333333 344556667777776


Q ss_pred             HHHh
Q 044703          150 NYLM  153 (179)
Q Consensus       150 ~yll  153 (179)
                      ..++
T Consensus       202 ka~~  205 (207)
T cd08910         202 KACQ  205 (207)
T ss_pred             HHHh
Confidence            6553

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=93.22  E-value=3.5  Score=32.77  Aligned_cols=141  Identities=10%  Similarity=-0.021  Sum_probs=76.9

Q ss_pred             EEEEEEEcCCHHHHHHHhhhc--cCcccccccCcceeEEEEEcCCCCCceEEEEEeec-Cce----eeee-eEEEeeeec
Q 044703            6 VTDEYTSPISPARLFKALIVD--SHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-GNQ----VKCS-KNRVDALDL   77 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d--~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~-g~~----~~~~-kErl~~~D~   77 (179)
                      +..+..++++++++.+.+. |  ... .++|.+. +.++++++.-+..=.+-...+.. +.+    -..+ .+....+++
T Consensus        48 ~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~  124 (206)
T cd08867          48 YRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED  124 (206)
T ss_pred             EEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence            6677899999999999996 7  555 6899985 88888887642111222222111 111    0111 111122233


Q ss_pred             CcceEEEEEEecCcccccee------eEEEEEEeeecC--CCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703           78 ENFSYKYSLIEGDVLMDKLE------KISYDVKFEPTA--DGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV  148 (179)
Q Consensus        78 ~~~~~~Y~iieG~~~~~~~~------~y~~ti~v~p~~--~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i  148 (179)
                      ....+...-++-+..+ +.+      .+.+-+-+.|.+  +++|.++|.+..+|.+..|  .-.+ ..+.+.....+++|
T Consensus       125 ~~~~i~~~Sv~hp~~p-~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP--~~lvn~~~~~~~~~~~~~l  201 (206)
T cd08867         125 NQWSSSGKSVDIPERP-PTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIP--QSLVESAMPSNLVNFYTDL  201 (206)
T ss_pred             CeEEEEEEeccCCCCC-CCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCc--HHHHHhhhhhhHHHHHHHH
Confidence            2222222223222111 122      233444566654  3579999999999987643  3333 34455667777887


Q ss_pred             HHHH
Q 044703          149 ENYL  152 (179)
Q Consensus       149 e~yl  152 (179)
                      ..||
T Consensus       202 r~~~  205 (206)
T cd08867         202 VKGV  205 (206)
T ss_pred             HHhc
Confidence            7765

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=92.44  E-value=5.3  Score=32.86  Aligned_cols=144  Identities=8%  Similarity=-0.006  Sum_probs=79.3

Q ss_pred             EEEEEEEEc-CCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC---c-eeeeeeEEEeeeecCc
Q 044703            5 TVTDEYTSP-ISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG---N-QVKCSKNRVDALDLEN   79 (179)
Q Consensus         5 ~v~~ei~i~-apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g---~-~~~~~kErl~~~D~~~   79 (179)
                      .+..+..++ ++++.+.+++. |... .++|.. .+.+.++++-.+.--.|-...+..=   . ..-...-++...|+..
T Consensus        53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~-r~~Wd~-~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~  129 (235)
T cd08872          53 PLKATHAVKGVTGHEVCHYFF-DPDV-RMDWET-TLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALE  129 (235)
T ss_pred             eEEEEEEECCCCHHHHHHHHh-Chhh-HHHHHh-hhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence            356667777 99999999997 9988 889998 4888887754311011122211110   0 0001111222233321


Q ss_pred             --------ceEEEEEEecCccccceeeE-EEE-----------------EEeeecCCCCceEEEEEEEEEcCCCCCCHHH
Q 044703           80 --------FSYKYSLIEGDVLMDKLEKI-SYD-----------------VKFEPTADGGSKNTMTSTYYTKGNIVLTEEE  133 (179)
Q Consensus        80 --------~~~~Y~iieG~~~~~~~~~y-~~t-----------------i~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~  133 (179)
                              -.+..++.-...++  -++| ++.                 +.++| ++++|.+++.+..+|.+..|  .-.
T Consensus       130 ~~~~~~~~vii~~Sv~h~~~P~--~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP--~wv  204 (235)
T cd08872         130 EPNAHDTWIVCNFSVDHDSAPL--NNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAP--ASV  204 (235)
T ss_pred             cccCCCeEEEEEecccCccCCC--CCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCcc--HHH
Confidence                    22333332222111  1111 122                 23445 35679999888888776543  333


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhcCc
Q 044703          134 -IKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus       134 -~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                       ...++..+-++++.+.+|+.++-
T Consensus       205 vn~~~k~~~P~~l~~~~~~~~~~~  228 (235)
T cd08872         205 LRAVYKREYPKFLKRFTSYVQEKT  228 (235)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHhc
Confidence             35566678999999999998753

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=88.12  E-value=12  Score=30.15  Aligned_cols=118  Identities=14%  Similarity=0.062  Sum_probs=67.3

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-----cCceeeeeeEEEeeeecC
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-----EGNQVKCSKNRVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-----~g~~~~~~kErl~~~D~~   78 (179)
                      ..+..+++++++++++...+- |-   .++|.+. +.+.++++.-+.  ....+.+.     +...-..+.-|.-..|..
T Consensus        52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~--~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~  124 (204)
T cd08908          52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDS--QTEIYQYVQNSMAPHPARDYVVLRTWRTNLP  124 (204)
T ss_pred             EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCC--CceEEEEEccCCCCCCCcEEEEEEEEEEeCC
Confidence            346788899999999999996 65   3689985 555666553210  11111111     111111233323323333


Q ss_pred             cceEEEEEE--ecCccc---cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCC
Q 044703           79 NFSYKYSLI--EGDVLM---DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIV  128 (179)
Q Consensus        79 ~~~~~Y~ii--eG~~~~---~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~  128 (179)
                      +..+.....  +-+-.+   .....+.+.+.++|.++|+|.++..+..+|.+..|
T Consensus       125 ~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP  179 (204)
T cd08908         125 KGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHMP  179 (204)
T ss_pred             CCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCCc
Confidence            333322222  111111   11455677889999988999999999999887653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=87.44  E-value=3.3  Score=33.80  Aligned_cols=103  Identities=11%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             EEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEe--ecCceeeeeeEEEeeeecCcceEEEEEE
Q 044703           11 TSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINV--VEGNQVKCSKNRVDALDLENFSYKYSLI   87 (179)
Q Consensus        11 ~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~--~~g~~~~~~kErl~~~D~~~~~~~Y~ii   87 (179)
                      .+..+++.+|++++ |... ..+..| ..++.++...+ ++ +.+-.+..  ++=  .+...-+++ .++..++.+- .-
T Consensus        75 ligysp~~my~vVS-~V~~-Y~~FVP-wC~kS~V~~~~P~~-~~kA~LeVGFk~l--~E~y~S~Vt-~~~p~l~kt~-~~  146 (227)
T KOG3177|consen   75 LIGYSPSEMYSVVS-NVSE-YHEFVP-WCKKSDVTSRRPSG-PLKADLEVGFKPL--DERYTSNVT-CVKPHLTKTV-CA  146 (227)
T ss_pred             hhCCCHHHHHHHHH-hHHH-hhcccc-ceeccceeecCCCC-CceeeEEecCccc--chhheeeeE-EecccceEEe-ec
Confidence            47899999999997 7777 777777 46666665543 22 23333433  221  122333433 5556555433 33


Q ss_pred             ecCccccceeeEEEEEEeeecC--CCCceEEEEEEEEEcC
Q 044703           88 EGDVLMDKLEKISYDVKFEPTA--DGGSKNTMTSTYYTKG  125 (179)
Q Consensus        88 eG~~~~~~~~~y~~ti~v~p~~--~g~s~v~W~~~ye~~~  125 (179)
                      +|.+    +......|++.|+.  .+.|.+...+.|+-+.
T Consensus       147 d~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S  182 (227)
T KOG3177|consen  147 DGRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS  182 (227)
T ss_pred             cccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence            5543    66677899999998  5789999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
1e09_A	159	Solution Structure Of The Major Cherry Allergen Pru		1e-43
1h2o_A	159	Solution Structure Of The Major Cherry Allergen Pru		5e-43
2lpx_A	170	Solution Structure Of Strawberry Allergen Fra A 1e		3e-39
3ie5_A	165	Crystal Structure Of Hyp-1 Protein From Hypericum P		2e-35
4a84_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		1e-33
4a80_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		2e-33
1fsk_A	159	Complex Formation Between A Fab Fragment Of A Monoc		3e-33
1fm4_A	159	Crystal Structure Of The Birch Pollen Allergen Bet		3e-33
1b6f_A	159	Birch Pollen Allergen Bet V 1 Length = 159		3e-33
1llt_A	159	Birch Pollen Allergen Bet V 1 Mutant E45s Length =		9e-33
4a8u_A	159	Crystal Structure Of Native Birch Pollen Allergen B		1e-32
1qmr_A	159	Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E4		7e-32
1xdf_A	157	Crystal Structure Of Pathogenesis-Related Protein L		2e-31
2k7h_A	157	Nmr Solution Structure Of Soybean Allergen Gly M 4		3e-31
2qim_A	158	Crystal Structure Of Pathogenesis-Related Protein L		3e-31
2bk0_A	154	Crystal Structure Of The Major Celery Allergen Api		4e-28
1icx_A	155	Crystal Structure Of Pathogenesis-Related Protein L		6e-28
1ifv_A	155	Crystal Structure Of Pathogenesis-Related Protein L		9e-28
2wql_A	154	Crystal Structure Of The Major Carrot Allergen Dau		8e-27
1tw0_A	157	Native Crystal Structure Of Spe16 Length = 157		2e-26
3rws_A	168	Crystal Structure Of Medicago Truncatula Nodulin 13		1e-23
2flh_A	155	Crystal Structure Of Cytokinin-Specific Binding Pro		2e-04

>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Length = 159

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 112/158 (70%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVFT   E+TS I P RLFKA ++D+ NL+PK+ PQA+K  EI EGDGG G+I++I   E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G+Q    K+++D++D EN+SY Y+LIEGD L D LEKISY+ K   +  GGS    TS Y
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKGN+ + EE +K GKEK+  ++K++E YL  +P+ Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Mutant E45w Length = 159

Iteration: 1
 Score =  169 bits (429), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 111/158 (70%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVFT   E+TS I P RLFKA ++D+ NL+PK+ PQA+K  EI  GDGG G+I++I   E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G+Q    K+++D++D EN+SY Y+LIEGD L D LEKISY+ K   +  GGS    TS Y
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKGN+ + EE +K GKEK+  ++K++E YL  +P+ Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e Length = 170

Iteration: 1
 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 107/159 (67%)
Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV+T  +E+TS I   +LFKA ++D+ NLIPK+ PQAVK  EI EGDGG G+I++I   
Sbjct: 1   MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+     K+++ ++D  N +Y YSLIEGD L + +EKI Y+ K      GG+    TS 
Sbjct: 61  EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           Y+TKG++ + EE +K GKEK+  ++K++E YL  +P EY
Sbjct: 121 YHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEY 159

>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum Perforatum (St John's Wort) Involved In Hypericin Biosynthesis Length = 165

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           M  +T+  E  SPI+P RLFKAL+++ H ++ K  P   KS EI EGDGG G++ +I  V
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           +G+ +    ++ D +D  NF  KY+L EGDVL D +EK+ Y+VK E    GGSK  +T T
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVT 125
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y+ K    + EEE+K G++K+   YK VE YL  NPE +A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165

>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A F30v Mutant In Complex With Deoxycholate Length = 159

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 102/158 (64%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D  NL+PK+ PQA+ S+E  EG+GG G+I++I+  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGGS   +++ Y
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans) Length = 159

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 101/158 (63%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D  NL PK+ PQA+ S+E  EG+GG G+I++I+  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGGS   +++ Y
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal Igg Antibody And The Major Allergen From Birch Pollen Bet V 1 Length = 159

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 101/158 (63%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D  NL PK+ PQA+ S+E  EG+GG G+I++I+  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGGS   +++ Y
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l Length = 159

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 100/158 (63%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  AR+FKA I+D   L+PK+ PQA+ S+E  EG+GG G+I++IN  E
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGG    +++ Y
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKGN  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1 Length = 159

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 101/158 (63%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D  NL PK+ PQA+ S+E  EG+GG G+I++I+  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGGS   +++ Y
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDAY 158

>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s Length = 159

Iteration: 1
 Score =  135 bits (341), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 100/158 (63%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D  NL PK+ PQA+ S+E   G+GG G+I++I+  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGGS   +++ Y
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1 Isoform J Length = 159

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 100/158 (63%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D  NL PK+ PQA+ S+E  EG+GG G+I++I+  E
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T +GGS   + + Y
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E+IK  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s, P108g Length = 159

Iteration: 1
 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 99/158 (62%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D   L P++ PQA+ S+E   G+GG G+I++I+  E
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGGS   +++ Y
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2a From Yellow Lupine Length = 157

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVFT  DE TS I+PARL+KAL+ D+  +IPK + +A++SIE  EG+GG G+I+++ ++E
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G + K   ++++A+D  N  Y YS++ G  L D +EKIS++ K    A+GGS   +T   
Sbjct: 60  GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
            TKG+    EEE K  K +  A +K +ENYL  +PE
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155

>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4 Length = 157

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVFT  DE  SP++PA L+KAL+ D+ N+IPK +  + KS+E  EG+GG G+I++I  +E
Sbjct: 1   GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
             + K   ++++++D  N  Y YS++ G  L D  EKI++D K     +GGS   +T  Y
Sbjct: 60  DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
            TKG+    ++E+K GK K+ A++K +E YL+ +P+
Sbjct: 120 ETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155

>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2b From Yellow Lupine In Complex With Cytokinin Length = 158

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVFT  DEYTS I+PA+L+KAL+ D+  +IPK + + ++S+EI EG+GG G+I+++  +
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG + K   ++++A+D  N  Y YS++ G  L D +EKIS++ K    A+GGS   +T  
Sbjct: 60  EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
             TKG+    EEE K  K +  A +K +E+YL  +P+
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156

>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1 Length = 154

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGV T   E TS +S  ++F+  ++D   ++PK  P A KS+EI +GDGG G+++ I + 
Sbjct: 1   MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           +G  +     R+D ++ E  ++ YS+I+GD+L+  +E I   V   PTADGGS    T+ 
Sbjct: 60  DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN 155
           ++TKG+ V+ EE IK   E++ A++K +E YL+ N
Sbjct: 120 FHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154

>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1a From Yellow Lupine Length = 155

Iteration: 1
 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           G+F   +E +S ++PA+L+KAL  DS  ++PK++ + ++S+EI EG+GG G+I++I  + 
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
                   +++DA+D  N +Y YS+I G+ L + LEKISY+ K  P  DGGS   +   +
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
           +TKG+ VL+E    + K K L ++K +E Y++ +P+
Sbjct: 120 HTKGD-VLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1b From Yellow Lupine Length = 155

Iteration: 1
 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF   DE+ S ++ A+LFKAL  DS ++IPK++ Q ++S+EI EG+GG G++++I    
Sbjct: 1   GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G       +++DA+D  +F Y YS++ G  L + LEKI+++ K     DGGS   +   +
Sbjct: 60  GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156
           +TKG+ VL++   +E K +   ++K VE Y++ NP
Sbjct: 120 HTKGD-VLSDAVREEAKARGTGLFKAVEGYVLANP 153

>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1 Length = 154

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MG  + + E TS +S  ++F  +++D   +IPK    A KS+E+ +GDGGAG++R I + 
Sbjct: 1   MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG+ +     R DA++ E  SY  ++I+GD+L+  +E I   +   PTADGGS    T+ 
Sbjct: 60  EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN 155
           ++TKG+ V+ EE IK    ++ A++K +E YL+ N
Sbjct: 120 FHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154

>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16 Length = 157

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF   DE +S ++PA+L+KAL  DS  +  K+    ++SIE+ EG+GG G+I++I   E
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANE 59
Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G++      +VDA+D  N  Y YS++ G  L + LEK+S++ K    + GGS + +T  +
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119
Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  L++    +   K    +K +E Y++ NP EY
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157

>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein From Mung Bean In Complex With Cytokinin Length = 155

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 19 LFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE 78
          L+  L  D   ++PK++P  VK +++ EGDGG G+I   N +   +V  S  R +  + +
Sbjct: 18 LWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLP--EVSPSYQREEITEFD 75
Query: 79 NFSYKYSL--IEGDVLMDKL 96
            S++  L  IEG  L   L
Sbjct: 76 ESSHEIGLQVIEGGYLSQGL 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	1e-61
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	2e-61
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	3e-61
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	3e-59
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	4e-59
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	4e-57
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	5e-56
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	1e-55
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	2e-53
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	8e-51
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	2e-37
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	7e-19
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	1e-16
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	4e-12
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	1e-09
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	1e-09
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	8e-09
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	1e-07
1vjh_A	122	BET V I allergen family; structural genomics, cent	5e-05

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score =  187 bits (475), Expect = 1e-61
 Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF   DE +S ++PA+L+KAL  DS  +  K+    ++SIE+ EG+GG G+I++I   E
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANE 59

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G++      +VDA+D  N  Y YS++ G  L + LEK+S++ K    + GGS + +T  +
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  L++    +   K    +K +E Y++ NP EY
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score =  186 bits (474), Expect = 2e-61
 Identities = 72/158 (45%), Positives = 100/158 (63%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  ARLFKA I+D  NL PK+ PQA+ S+E  EG+GG G+I++I+  E
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T +GGS   + + Y
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKG+  +  E+IK  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score =  186 bits (473), Expect = 3e-61
 Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 1/160 (0%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           M  +T+  E  SPI+P RLFKAL+++ H ++ K  P   KS EI EGDGG G++ +I  V
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           +G+ +    ++ D +D  NF  KY+L EGDVL D +EK+ Y+VK E    GGSK  +T T
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAV-GGGSKGKITVT 125

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA 160
           Y+ K    + EEE+K G++K+   YK VE YL  NPE +A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score =  181 bits (460), Expect = 3e-59
 Identities = 81/158 (51%), Positives = 112/158 (70%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVFT   E+TS I P RLFKA ++D+ NL+PK+ PQA+K  EI EGDGG G+I++I   E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G+Q    K+++D++D EN+SY Y+LIEGD L D LEKISY+ K   +  GGS    TS Y
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKGN+ + EE +K GKEK+  ++K++E YL  +P+ Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score =  175 bits (445), Expect = 4e-57
 Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 1   MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV 60
           MGVFT  DEYTS I+PA+L+KAL+ D+  +IPK   + ++S+EI EG+GG G+I+++  +
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKA-VETIQSVEIVEGNGGPGTIKKLTFI 59

Query: 61  EGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST 120
           EG + K   ++++A+D  N  Y YS++ G  L D +EKIS++ K    A+GGS   +T  
Sbjct: 60  EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119

Query: 121 YYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
             TKG+    EEE K  K +  A +K +E+YL  +P+
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score =  172 bits (438), Expect = 5e-56
 Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           G+F   +E +S ++PA+L+KAL  DS  ++PK++   ++S+EI EG+GG G+I++I  + 
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIH 59

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
                   +++DA+D  N +Y YS+I G+ L + LEKISY+ K  P  DGGS   +   +
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
           +TKG+ VL+E    + K K L ++K +E Y++ +P+
Sbjct: 120 HTKGD-VLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score =  172 bits (436), Expect = 1e-55
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 1/154 (0%)

Query: 3   VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG 62
           V     +    +    L+  L  D   ++PK++P  VK +++ EGDGG G+I   N +  
Sbjct: 2   VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPE 61

Query: 63  NQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYY 122
                 +  +   D  +      +IEG  L   L       K     +  +   +  +Y 
Sbjct: 62  VSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYD 121

Query: 123 TKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP 156
              +I       K   + +L   + +E YL    
Sbjct: 122 HDSDIEEKVTPTKT-SQSTLMYLRRLERYLSNGS 154

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score =  161 bits (408), Expect = 8e-51
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 5/170 (2%)

Query: 5   TVTDEYTSPISPARLFKAL-IVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN 63
            +  E     S   ++           +P L+P A + +EI  GDGG G+I  +  V G 
Sbjct: 30  VIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEI-IGDGGVGTILDMTFVPGE 88

Query: 64  QVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT 123
                K +   +D E+   K  +IEG  L   +      +   PT         ++ Y+ 
Sbjct: 89  FPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHV 148

Query: 124 KG-NIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASLEFSSLIKNKY 172
           K   + + E  I  G     AM   +   ++++  +  S E  + I   +
Sbjct: 149 KPEFVKIVEPLITTGPLA--AMADAISKLVLEHKSKSNSDEIEAAIITVH 196

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score =  125 bits (316), Expect = 2e-37
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 15  SPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVD 73
           + A  F  +     + + K  P  ++  ++ EGD G  GSI   N V   + K +K R++
Sbjct: 27  ASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIE 86

Query: 74  ALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADG-GSKNTMTSTYYTKGNIVLTEE 132
           A++ +     + +IEGD+ M + +     ++  P   G GS       Y      V   E
Sbjct: 87  AVEPDKNLITFRVIEGDL-MKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPE 145

Query: 133 EIKEGKEKSLAMYKVVENYLMQN 155
            + +   +   + K ++ +L+  
Sbjct: 146 TLLQFCVE---VSKEIDEHLLAE 165

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 78.6 bits (193), Expect = 7e-19
 Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 16  PARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDAL 75
           PA +   LI    N  P+     VK   +  GDG  GS+R++ V+ G     S  R++ +
Sbjct: 46  PASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFV 103

Query: 76  DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY-------YTKGNIV 128
           D ++    + ++ G+  +   + ++   +F     G     +  +Y        T+ +  
Sbjct: 104 DDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTK 163

Query: 129 LTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
           +  + + +   + L       +  M + E
Sbjct: 164 MFVDTVVKLNLQKLG--VAATSAPMHDDE 190

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 32  PKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGD 90
           P++    +KS  + E      G  R +NV+ G     S+ R+D LD +     +S+  G+
Sbjct: 79  PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGE 138

Query: 91  VLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT----KGNIVLTEEE 133
             +   + ++   +FE   +     T+    Y     +GN   +EE+
Sbjct: 139 HRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGN---SEED 182

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 11/109 (10%)

Query: 32  PKLMPQAVKSIEIFEGDGGA-GSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGD 90
           P+     +KS  + +      G  R + V+ G     S  R+D LD E     +S+I G+
Sbjct: 75  PQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGE 134

Query: 91  VLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT----KGNIVLTEEEIK 135
               +L                   T+    Y     +GN   +E++ +
Sbjct: 135 H---RLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGN---SEDDTR 177

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 10/108 (9%)

Query: 32  PKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDV 91
           P+     +    +       GS+R++++  G     S   ++ LD         ++ GD 
Sbjct: 52  PQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDH 111

Query: 92  LMDKLEKISYDVKFEPTADGGSKNTMTSTYYT----KGNIVLTEEEIK 135
            +      S  +        G   T+    +     +GN   T+EE  
Sbjct: 112 RLKNY---SSTISLHSETIDGKTGTLAIESFVVDVPEGN---TKEETC 153

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 38  AVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLE 97
            V    +  GD   GS+R++NV  G     S  R++ LD E       +I GD    +L+
Sbjct: 83  FVSRCTV-IGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDH---RLK 138

Query: 98  KISYDVKFEPTADGGSKNTMT-STYYTKGNIVLTEEEIKEGKE-------KSLAMYKVVE 149
             S  +   P    G   TM   ++        T++E     E       KSLA   V E
Sbjct: 139 NYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLA--DVSE 196

Query: 150 NYLMQNPEE 158
               Q+  +
Sbjct: 197 RLASQDITQ 205

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 14/113 (12%)

Query: 32  PKLMPQAVKSIEIFEGDGGA-----GSIRQINVVEGNQVKCSKNRVDALDLENFSYKYSL 86
           P      +KS  I     G      G+IR+++VV G     S   ++ LD E     + +
Sbjct: 55  PNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRV 114

Query: 87  IEGD--VLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT----KGNIVLTEEE 133
           + G+  +   +      +             ++    Y     +GN   TEE+
Sbjct: 115 LGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGN---TEED 164

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 57  INVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADG-GSKN 115
           +        K  K  ++A+DL   +    +   ++     + +   +   P   G GS  
Sbjct: 25  VEDTNRPFEKNGKTEIEAVDLVKKTMTIQMSGSEI-QKYFKTLKGSIAVTPIGVGDGSHV 83

Query: 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
             T  +      +     I +   K    +K ++  ++   E
Sbjct: 84  VWTFHFEKVHKDIDDPHSIIDESVK---YFKKLDEAILNFKE 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.97
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.97
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.97
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.96
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.96
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.96
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.96
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.95
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.95
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.94
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.93
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.74
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.73
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.71
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.69
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.62
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.48
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.48
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.45
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.41
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.33
2leq_A	146	Uncharacterized protein; start domains, structural	99.07
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.05
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	99.02
2il5_A	171	Hypothetical protein; structural genomics, APC2365	99.01
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	99.0
2lcg_A	142	Uncharacterized protein; start domain, structural	98.92
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.86
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.8
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.8
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.79
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.77
3put_A	166	Hypothetical conserved protein; structural genomic	98.76
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.73
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.73
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.69
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.69
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.67
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.67
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.67
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.64
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.61
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.58
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.5
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.48
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.44
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.41
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.35
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.24
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.23
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	98.2
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.13
2luz_A	192	CALU16; structural genomics, northeast structural	98.07
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.01
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.75
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.51
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	96.59
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	96.45
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	96.34
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	95.95
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	95.87
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	95.46
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	95.38
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	93.91

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=3.8e-49  Score=307.74  Aligned_cols=158  Identities=46%  Similarity=0.780  Sum_probs=149.5

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHh-hhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCc
Q 044703            1 MGVFTVTDEYTSPISPARLFKAL-IVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLEN   79 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~-~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~   79 (179)
                      ||+++++.|++|+|||++||+++ + ||++|+|+|+|++|++|++++|||++||||.|+|.+|++..++||||+++|+++
T Consensus         7 Mg~~~~~~ev~i~a~a~kvw~~~v~-d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~iD~~~   85 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVL-ERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDEIDAAN   85 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTT-THHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEEEEEEEEEEGGG
T ss_pred             eeeEEEEEEEEecCCHHHHHHHhcC-CccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceEEEEEEEEchhc
Confidence            99999999999999999999995 6 999966999999999999999999999999999999988789999999999999


Q ss_pred             ceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703           80 FSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY  159 (179)
Q Consensus        80 ~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~  159 (179)
                      |+++|+++||++++.+|++|+++++|+ .++|+|+++|+++|+++++..++|+.++.+++++.+|+|+||+||++|||+|
T Consensus        86 ~~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~~~~~~K~ie~yllanp~~~  164 (165)
T 3ie5_A           86 FYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVF  164 (165)
T ss_dssp             TEEEEEEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred             CEEEEEEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            999999999998866799999999999 5677999999999999999888888787889999999999999999999999


Q ss_pred             c
Q 044703          160 A  160 (179)
Q Consensus       160 ~  160 (179)
                      |
T Consensus       165 ~  165 (165)
T 3ie5_A          165 A  165 (165)
T ss_dssp             C
T ss_pred             C
Confidence            7

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=9.5e-49  Score=303.73  Aligned_cols=158  Identities=45%  Similarity=0.725  Sum_probs=148.9

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHh-hhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            2 GVFTVTDEYTSPISPARLFKAL-IVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~-~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      |+.+++.|++|++||++||+++ + ||++|+|+|+|++|++|++++|||++||||.|+|.+|++..++||||+++|+++|
T Consensus         1 ~~~~~~~ei~i~a~a~kvw~~~~~-d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~   79 (159)
T 4a8u_A            1 GVFNYETEATSVIPAARLFKAFIL-DGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNF   79 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTT-THHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSEEEEEEEEEETTTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhc-CccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccEEEEEEEEEccccC
Confidence            6889999999999999999999 6 9999889999999999999999999999999999999888899999999999999


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA  160 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~  160 (179)
                      +++|+++||++++.+|++|+++++|+|.++|+|+++|+++|++.++..++|+.++.+++++.+|+|+||+||++|||+||
T Consensus        80 ~~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~np~~~~  159 (159)
T 4a8u_A           80 KYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN  159 (159)
T ss_dssp             EEEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred             EEEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhChhhhC
Confidence            99999999999876799999999999998889999999999999987777776777899999999999999999999997

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=6.9e-47  Score=291.99  Aligned_cols=154  Identities=38%  Similarity=0.646  Sum_probs=144.9

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      ||+++++.|+++++||+|+|+++.+|+++|+|+|+|+++++++ ++|||++||||.|+|..|++..+++|||+++|+++|
T Consensus         1 mgv~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGdg~~Gsir~~t~~~g~~~~~~kErle~iD~~~~   79 (154)
T 2wql_A            1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEAL   79 (154)
T ss_dssp             --CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESSSSTTCEEEEECCTTCSCCEEEEEEEEEETTTT
T ss_pred             CCCeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECCCCCCeEEEEEEcCCCCceEEEEEEEEEehhhC
Confidence            9999999999999999999998756999988999999999999 589999999999999999888899999999999999


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n  155 (179)
                      +|+|+++|||++..+|++|+++++|+|.++|+|+++|+++|++++++.++|+.++.+++.+.+|||+||+||++|
T Consensus        80 ~~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           80 SYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             EEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            999999999988778999999999999999999999999999999998999888888899999999999999998

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=6.6e-46  Score=287.19  Aligned_cols=159  Identities=51%  Similarity=0.874  Sum_probs=148.7

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+++++.+++|++||++||+++++||++++|+|+|+.|++|++++|||++||||.|+|.+|.+..+++|||+.+|+++|+
T Consensus         1 ~~~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~   80 (159)
T 1e09_A            1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEEEEEEEEEcCCCCE
Confidence            68999999999999999999995599976899999989999999999999999999999876667999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA  160 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~  160 (179)
                      ++|+++||+++..+|++|.++++|.|.++|||+++|+++|++.++..++|+.++.+++.+.+|+|+||+||++|||+||
T Consensus        81 ~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~~~~~  159 (159)
T 1e09_A           81 YSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN  159 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred             EEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhhcC
Confidence            9999999998876799999999999998889999999999999887777877777899999999999999999999997

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=1.4e-45  Score=285.01  Aligned_cols=158  Identities=42%  Similarity=0.746  Sum_probs=147.2

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      ||+++++.+++|++||++||+++++||++++|+|+ +.|++|++++|||++||||.|+|.+|.+..+++|||+++|+++|
T Consensus         1 M~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   79 (158)
T 2qim_A            1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANL   79 (158)
T ss_dssp             -CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHC-TTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGT
T ss_pred             CCCEEEEEEEEecCCHHHHHHHHhcCccchhhhHH-hhCcEEEEEecCCCCCeEEEEEEcCCCcceeEEEEEEEEecCCC
Confidence            99999999999999999999999559998789999 57999999999999999999999998877899999999999999


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA  160 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~  160 (179)
                      +++|+++||++++..|++|.++++|+|.++|||+++|+++|++.++..++|+.++.+++.+.+|+|+||+||++||| ||
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~-~~  158 (158)
T 2qim_A           80 GYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD-YN  158 (158)
T ss_dssp             EEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSS-CC
T ss_pred             EEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcC-cC
Confidence            99999999998765699999999999998888999999999999988888877777889999999999999999999 87

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=1.4e-44  Score=279.36  Aligned_cols=157  Identities=37%  Similarity=0.674  Sum_probs=146.9

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+++++.+++|++||++||+++++||++++|+|+ +.|++|++++|+|++||||.|+|.+|.+..+++|||+++|+++|+
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (157)
T 1tw0_A            1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKID-GPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHTGGGGGGGSC-SSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhhhhHH-hhccEEEEEeCCCCCCeEEEEEeeCCCccceEEEEEEEEeccCCE
Confidence            6899999999999999999999569998789999 579999999999999999999999988778999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY  159 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~  159 (179)
                      ++|+++||++++..|++|.++++|+|.++|||+++|+++|++.++..++|+.++.+++.+.+|+|+||+||++|||+|
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~~~  157 (157)
T 1tw0_A           80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY  157 (157)
T ss_dssp             EEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            999999999876569999999999999888899999999999998888887777788999999999999999999998

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=2e-43  Score=272.20  Aligned_cols=155  Identities=37%  Similarity=0.734  Sum_probs=143.7

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+++++.+++|++||++||+++++||++++|+|+ +.|++|++++|+|++||||.|+|.+|.+..+++|||+++|+++|+
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (155)
T 1icx_A            1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHS-TTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhcchhh-hhccEEEEEecCCCCCeEEEEEEecCCcceeEEEEEEEEeccCCE
Confidence            6899999999999999999999559998789999 579999999999999999999999887778999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEE  158 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~  158 (179)
                      ++|+++||++++..|++|.++++|+|.++|||+++|+++|++.++. ++|+.++.+++.+.+|+|+||+||++|||+
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~~~~~~~~~~~~~~~k~ie~yll~~p~~  155 (155)
T 1icx_A           80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999998765699999999999998778999999999999888 777666677899999999999999999985

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=1.1e-43  Score=273.96  Aligned_cols=150  Identities=20%  Similarity=0.335  Sum_probs=131.1

Q ss_pred             CccEEEEEEEEEcCCHHHHHHH-hhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC-ceeeeeeEEEeeeecC
Q 044703            1 MGVFTVTDEYTSPISPARLFKA-LIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG-NQVKCSKNRVDALDLE   78 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~-~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g-~~~~~~kErl~~~D~~   78 (179)
                      || ++++.+++|+|||++||++ ++ ||++|+|+|+|+++++|++++|||++||||.|+|.+| .+ .++||||+++|++
T Consensus         1 M~-~~~~~e~~i~a~a~kvw~~~v~-d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~   77 (155)
T 2flh_A            1 MV-KEFNTQTELSVRLEALWAVLSK-DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDES   77 (155)
T ss_dssp             CC-EEEEEEEEESSCHHHHHHHHHT-SCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETT
T ss_pred             CC-cEEEEEEEecCCHHHHHHHHhc-ccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCC
Confidence            99 9999999999999999999 66 9999669999999999999999999999999999988 66 7999999999999


Q ss_pred             cceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHH--HHHHHHHHHHHHHHhcCc
Q 044703           79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGK--EKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~--e~~~~~~k~ie~yll~n~  156 (179)
                      +|+++|+++||+++..+|++|.++++|.|.++|+|+++|+++|++.++..+.+   +.++  +.+.+|+|+||+||++||
T Consensus        78 ~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~~~---~~~~~~~~~~~~~k~ie~yll~~~  154 (155)
T 2flh_A           78 SHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKV---TPTKTSQSTLMYLRRLERYLSNGS  154 (155)
T ss_dssp             TTEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC-------C---CHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCccCh---hHhhhHHHHHHHHHHHHHHHhhCC
Confidence            99999999999987667999999999999988899999999999998765522   2456  899999999999999987

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=1.1e-43  Score=284.47  Aligned_cols=164  Identities=21%  Similarity=0.259  Sum_probs=138.7

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhh-ccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            3 VFTVTDEYTSPISPARLFKALIV-DSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~-d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      .++++.+++|+|||++||+++.. ||++++|+|+|+++++|+++ |||++||||.|+|.+|++..++||||+++|+++|+
T Consensus        28 ~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~~G~~~~~vkErle~iDde~~~  106 (201)
T 2vq5_A           28 TKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGEFPHEYKEKFILVDNEHRL  106 (201)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECCTTCSSCEEEEEEEEEETTTTE
T ss_pred             ceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEecCCCcccEEEEEEEEEchhhCE
Confidence            37899999999999999999766 89997799999999999999 99999999999999987778999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-VLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA  160 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~  160 (179)
                      |+|+++||+++..+|++|+++++|+|.++|||+++|+++|++.++. +++++.  .+++.+.+|+|+||+||++||    
T Consensus       107 ~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~--~~~~~~~~~~KaiE~yLlanp----  180 (201)
T 2vq5_A          107 KKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL--ITTGPLAAMADAISKLVLEHK----  180 (201)
T ss_dssp             EEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTT--CCSHHHHHHHHHHHHHHHSCC----
T ss_pred             EEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhH--HHHHHHHHHHHHHHHHHHhCc----
Confidence            9999999998766799999999999998889999999999998876 333222  456799999999999999999    


Q ss_pred             cceecccccchhh
Q 044703          161 SLEFSSLIKNKYV  173 (179)
Q Consensus       161 ~~~~~~~~~~~~~  173 (179)
                      ...|+++||+.++
T Consensus       181 ~~~~~~~~~~~~~  193 (201)
T 2vq5_A          181 SKSNSDEIEAAII  193 (201)
T ss_dssp             CC-----------
T ss_pred             cccccceeeeeeE
Confidence            6789999999775

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-40  Score=256.38  Aligned_cols=148  Identities=20%  Similarity=0.337  Sum_probs=134.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ++++.+++|+|||++||++++.|++. +|+|+|+.|++|++++|| |++||||.|+|..|++..++||||+++|++++++
T Consensus        17 ~k~~~ev~i~apa~kvw~~~~~d~~~-lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~iD~~~~~~   95 (166)
T 2i9y_A           17 GKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLI   95 (166)
T ss_dssp             EEEEEEEEESSCHHHHHGGGSSCSSC-CCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEEETTTTEE
T ss_pred             cEEEEEEEecCCHHHHHHHHhccccc-ccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEEeccCcEE
Confidence            89999999999999999996558887 899999889999999999 9999999999999988889999999999999999


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCC-CceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADG-GSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g-~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                      +|+++||+++ .+|++|.++++|+|.++| ||+|+|+++|++.++..+++.   .+++++.+|+|+||+||++||
T Consensus        96 ~y~iieGd~~-~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~---~~~~~~~~~~k~ie~~l~~~~  166 (166)
T 2i9y_A           96 TFRVIEGDLM-KEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPE---TLLQFCVEVSKEIDEHLLAEE  166 (166)
T ss_dssp             EEEECCTTGG-GTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEEeCCCC-CCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHH---HHHHHHHHHHHHHHHHHhhCC
Confidence            9999999985 479999999999998654 899999999999887555454   345799999999999999985

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=3.6e-30  Score=206.94  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=98.9

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      +.....+|+|||++||++++ ||++ +|+|+| .|++|++++|+ |++|+||.|+|.+|++..+++|||+++|+++|+|+
T Consensus        55 ~~~v~~~I~ApadkVW~lv~-Df~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDde~~~~s  131 (208)
T 3jrs_A           55 SSLLAQRIHAPPETVWSVVR-RFDR-PQIYKH-FIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTG  131 (208)
T ss_dssp             EEEEEEEESSCHHHHHHHHT-CTTC-GGGTCT-TEEEEECCTTCCCSTTCEEEEEECTTSSCCEEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEEeCCHHHHHHHHh-CcCC-hhHccc-cceEEEEecCCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEE
Confidence            34455689999999999997 9999 799999 69999999997 69999999999999777799999999999999999


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCC-CCceEEEEEEEEE
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTAD-GGSKNTMTSTYYT  123 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~-g~s~v~W~~~ye~  123 (179)
                      |+|++|++   ++++|+++++|.|.++ ++|.|+|+++|++
T Consensus       132 YsIieG~l---pv~~Y~sti~V~p~~~g~~t~V~Wt~~fes  169 (208)
T 3jrs_A          132 FSITGGEH---RLRNYKSVTTVHRFEKEEEEERIWTVVLES  169 (208)
T ss_dssp             EEEEESSS---SCTTCEEEEEEEEEEC-----CEEEEEEEE
T ss_pred             EEEeeCCc---ceeeEEEEEEEEEccCCCccEEEEEEEEEE
Confidence            99999985   4899999999999754 5899999999995

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.97  E-value=1.6e-29  Score=187.67  Aligned_cols=120  Identities=13%  Similarity=0.229  Sum_probs=101.8

Q ss_pred             Ccc-EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCc
Q 044703            1 MGV-FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLEN   79 (179)
Q Consensus         1 M~~-~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~   79 (179)
                      |++ ++++.+++|++||++||++++ +++. +| |.+                 +       |.   .   |++++|++|
T Consensus         1 m~~~g~~~~e~~i~~~a~k~w~~~~-~~~~-~p-~g~-----------------~-------G~---~---~ie~iD~~~   47 (122)
T 1vjh_A            1 STLKGALSVKFDVKCPADKFFSAFV-EDTN-RP-FEK-----------------N-------GK---T---EIEAVDLVK   47 (122)
T ss_dssp             CCSEEEEEEEEEESSCHHHHHHHHH-HHTT-SC-SST-----------------T-------CE---E---EEEEEETTT
T ss_pred             CCCCcEEEEEEEecCCHHHHHHHHh-hccc-CC-ccC-----------------C-------Cc---c---EEEEEeccc
Confidence            787 999999999999999999997 8754 77 533                 1       21   1   999999999


Q ss_pred             ceEEEEEEecCccccceeeEEEEEEeeecC-CCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044703           80 FSYKYSLIEGDVLMDKLEKISYDVKFEPTA-DGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE  157 (179)
Q Consensus        80 ~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~-~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d  157 (179)
                      ++|+|+++||+++. +|++|+++++|+|.+ +|||+|+|+++|++.++..++|+.   .++++.+|+|+||+||++|||
T Consensus        48 ~~~~y~iieGd~~~-~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~---~~~~~~~~~k~ie~yll~~p~  122 (122)
T 1vjh_A           48 KTMTIQMSGSEIQK-YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHS---IIDESVKYFKKLDEAILNFKE  122 (122)
T ss_dssp             TEEEEEEECTTGGG-TEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHH---HHHHHHHHHHHHHHHHHHC--
T ss_pred             CEEEEEEEEccccc-cEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999875 799999999999985 568999999999999876555543   357999999999999999996

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.97  E-value=1e-29  Score=200.84  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcC-CCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEG-DGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eG-dg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      +...+.+|+|||++||++++ ||++ +|+|+| .|++| .++| +|++|+||.|+|.+|.+..+++|||+++|+++|+|+
T Consensus        28 ~~~v~~~I~Apa~~VW~~v~-df~~-l~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~~G~p~~~vkErL~~~D~~~~~~s  103 (183)
T 3rt2_A           28 SSTLVKHIKAPLHLVWSIVR-RFDE-PQKYKP-FISRC-VVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILG  103 (183)
T ss_dssp             EEEEEEEESSCHHHHHHHHT-CTTC-GGGTCT-TEEEE-EESSSCCCTTCEEEEEECCSSTTCEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHh-CcCc-hhhcCc-cceEE-EeeCCCCCCCcEEEEEeCCCCccceEEEEEEEEECCCCEEE
Confidence            44556699999999999997 9999 799999 59999 6789 789999999999988666699999999999999999


Q ss_pred             EEEEecCccccceeeEEEEEEeeecC-CC--CceEEEEEEEEEcCCCC
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTA-DG--GSKNTMTSTYYTKGNIV  128 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~-~g--~s~v~W~~~ye~~~~~~  128 (179)
                      |++++|++   ++++|.++++|.|.+ +|  +|.|+|+++|++.+++.
T Consensus       104 Y~Iieg~l---p~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~  148 (183)
T 3rt2_A          104 IRIVGGDH---RLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNT  148 (183)
T ss_dssp             EEEEEESC---SCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCC
T ss_pred             EEEecCCc---ceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCC
Confidence            99999975   499999999999987 65  69999999999766543

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.96  E-value=2.2e-28  Score=194.27  Aligned_cols=115  Identities=15%  Similarity=0.179  Sum_probs=98.0

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEEE
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKYS   85 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y~   85 (179)
                      .....+|+|||++||++++ ||++ .+.|.| .|++|++++|||++|+||.|+|.+|++..+++|||+++|+++|+|+|+
T Consensus        37 ~~~~~~I~Apa~~vW~lv~-df~~-~~~w~p-~I~s~e~~eGdg~vGsVR~~t~~~G~p~~~vkErL~~iD~~~~~~sY~  113 (190)
T 3kl1_A           37 SLITQRIHAPASVVWPLIR-RFDN-PERYKH-FVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFR  113 (190)
T ss_dssp             EEEEEEESSCHHHHHHHHH-CTTC-GGGTCS-SEEEEEEEESSSSTTCEEEEEECSSSSCEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHh-CCCC-hhHccc-ccCEEEEEcCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEEE
Confidence            3445589999999999997 9999 545555 799999999999999999999999987789999999999999999999


Q ss_pred             EEecCccccceeeEEEEEEeee-----cCCCCceEEEEEEEEEcCC
Q 044703           86 LIEGDVLMDKLEKISYDVKFEP-----TADGGSKNTMTSTYYTKGN  126 (179)
Q Consensus        86 iieG~~~~~~~~~y~~ti~v~p-----~~~g~s~v~W~~~ye~~~~  126 (179)
                      +++|+++   +++|++++++.|     .++++|.|+|+++|++..+
T Consensus       114 iieG~~~---~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g  156 (190)
T 3kl1_A          114 VVGGEHR---LKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEG  156 (190)
T ss_dssp             EEEESSS---CCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTT
T ss_pred             EEecCCc---cccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCC
Confidence            9999974   566677776666     3556899999999996444

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.96  E-value=3.8e-28  Score=184.82  Aligned_cols=135  Identities=16%  Similarity=0.228  Sum_probs=109.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.+++|+|||++||++++ ||++ +|+|+| .+++|++++|    |++|.+++.+|+   +++|||+++|+++++++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~l~-d~~~-~~~w~p-~v~~~~~~~G----G~vR~~~~~~G~---~~~Erl~~~D~~~~~~~   71 (146)
T 3f08_A            2 AHTTTSMEIFGSTEQVWQLIG-GFNS-LPDWLP-YIPSSKLTEG----GRVRHLANPDGE---TIIERLEVFNDKERYYT   71 (146)
T ss_dssp             CEEEEEEEESSCHHHHHHHHC-STTC-HHHHCT-TCCEEEEEGG----GTEEEEECTTSC---EEEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEEeCCHHHHHHHHh-cccc-HHHhCC-CeEEEEEeCC----CeEEEEEeCCCC---EEEEEEEEEeCCCCEEE
Confidence            368899999999999999997 9999 899999 5899998865    899999998775   89999999999999999


Q ss_pred             EEEEecCccccceeeEEEEEEeee-cCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEP-TADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p-~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      |++++|++   ++++|.++++|.| .++|||.|+|+++|+|.+.  ..+...+.....+...+++|.+.+.
T Consensus        72 y~iv~g~~---~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g~--~~~~~~~~~~~~~~~~L~~Lk~~~e  137 (146)
T 3f08_A           72 YSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAV--SDEEAINLVHGIYSDGLKALQHAFL  137 (146)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEESSS--CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEecCCC---ceeEEEEEEEEEEecCCCcEEEEEEEEEEeCCC--CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999964   3999999999999 5677999999999998322  1222223333344555555555443

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.96  E-value=4e-29  Score=201.22  Aligned_cols=111  Identities=16%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      ......+|+|||++||++++ ||++ +++|+| .|++|++++|+ +++|+||.|++.+|.+..+++|||+++|+++|+|+
T Consensus        51 ~~~v~~~I~ApadkVW~lv~-dF~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDd~~~~~s  127 (211)
T 3k3k_A           51 SSLHAQRIHAPPELVWSIVR-RFDK-PQTYKH-FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTG  127 (211)
T ss_dssp             EEEEEEEESSCHHHHHHHHT-CTTC-GGGTCS-SEEEEECCTTCCCCTTCEEEEEESSSSSCEEEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEEcCCHHHHHHHHh-CcCC-hhHcCc-cceEEEEecCCCCCCCcEEEEEecCCCccceEEEEEEEEeccCCEEE
Confidence            34455689999999999997 9999 899999 69999999997 58999999999999777799999999999999999


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT  123 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~  123 (179)
                      |+|++|++   ++++|+++|+|.|.++|+  |+|+++|+.
T Consensus       128 YsIieg~l---pv~~Y~sti~V~p~~~gg--V~Wt~~fes  162 (211)
T 3k3k_A          128 FSIIGGEH---RLTNYKSVTTVHRFEKEN--RIWTVVLES  162 (211)
T ss_dssp             EEEEEETT---GGGTCEEEEEEEEEEETT--EEEEEEEEE
T ss_pred             EEEeecCc---ceeEEEEEEEEEECCCCC--EEEEEEEEE
Confidence            99999985   499999999999998765  999999995

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.96  E-value=3.4e-28  Score=194.99  Aligned_cols=118  Identities=21%  Similarity=0.220  Sum_probs=105.5

Q ss_pred             cEEEEEEE--EEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            3 VFTVTDEY--TSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         3 ~~~v~~ei--~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      .++++.++  +|+|||++||++++ ||++ +++|+| .|++|++ +|+|++|+||.|+|.+|.+..+++|||+++|+++|
T Consensus        49 ~~k~~~~V~~~I~ApadkVW~lV~-Df~~-l~kW~P-~V~s~ev-eGdg~vGsVR~vt~~~G~p~~~vkErL~~lDde~~  124 (205)
T 3oqu_A           49 ENQCTSALVKHIKAPLHLVWSLVR-RFDQ-PQKYKP-FVSRCTV-IGDPEIGSLREVNVKSGLPATTSTERLELLDDEEH  124 (205)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHT-CTTC-GGGTCT-TEEEEEC-CSSCCTTCEEEEEECTTSSCSEEEEEEEEEETTTT
T ss_pred             CcEEEEEEeeEEcCCHHHHHHHHh-CcCC-hhHcCc-cceEEEe-eCCCCCCcEEEEEEcCCCccceEEEEEEEEECCCC
Confidence            35788888  99999999999997 9999 789999 6999984 89999999999999988766799999999999999


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCC-C--CceEEEEEEEEEcCCC
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTAD-G--GSKNTMTSTYYTKGNI  127 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~-g--~s~v~W~~~ye~~~~~  127 (179)
                      +|+|++++|++   ++++|.++++|.|.++ |  +|.+.|+..+++.+++
T Consensus       125 ~~sYsIieG~l---pv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~  171 (205)
T 3oqu_A          125 ILGIKIIGGDH---RLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGN  171 (205)
T ss_dssp             EEEEEEEEESS---SCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTC
T ss_pred             EEEEEEEecCc---ceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCC
Confidence            99999999975   4999999999999984 4  6899999998765554

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.95  E-value=3.7e-27  Score=182.32  Aligned_cols=136  Identities=13%  Similarity=0.160  Sum_probs=110.6

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCC--CCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG--GAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg--~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      .+++.+++|+|||++||++++ ||++ + +|+|.++++|++++|+|  ++|+||.+    |+   +++|||+++|+++++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~v~-Df~~-~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----gg---~v~Erl~~~D~~~~~   71 (160)
T 3p51_A            2 PKVYNSIVVDAPVERVWSRIR-NFHD-F-SWAPSLIKSCKKVGGGGGYSVGARRLL----NG---EFLDTLIAYSEIERR   71 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHC-CTTC-C-TTCTTTCCCEEEESSCCTTCTTCEEEE----TT---TEEEEEEEEETTTTE
T ss_pred             CEEEEEEEECCCHHHHHHHHh-CcCC-C-eEccCceEEEEEEecCCCCCCCCEEEE----CC---EEEEEEEEEcCCCcE
Confidence            468899999999999999997 9999 7 99998777779998874  89999998    33   789999999999999


Q ss_pred             EEEEEEecCccc--cceeeEEEEEEeeecC-CCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           82 YKYSLIEGDVLM--DKLEKISYDVKFEPTA-DGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        82 ~~Y~iieG~~~~--~~~~~y~~ti~v~p~~-~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      ++|++++|+++.  +.+++|.++++|.|.+ +|+|.|+|+++|++.++     ...+.....+...+++|.+.+.+
T Consensus        72 ~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~-----~~~~~~~~~~~~~L~~Lk~~~e~  142 (160)
T 3p51_A           72 IMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAST-----EAVEYMNTVYRSLLADLAAEFTS  142 (160)
T ss_dssp             EEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESCS-----HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             EEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999997531  1299999999999997 67899999999999742     22233344556666666666544

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.95  E-value=1.9e-26  Score=182.50  Aligned_cols=138  Identities=19%  Similarity=0.140  Sum_probs=106.1

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEc-CCCC----CceEEEEEeecCceeeeeeEEEeeeecCc
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFE-GDGG----AGSIRQINVVEGNQVKCSKNRVDALDLEN   79 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~e-Gdg~----~GsvR~~~~~~g~~~~~~kErl~~~D~~~   79 (179)
                      +....++|+|||++||++++ ||++ ++.|+| +|++|++.+ |||+    +|+||.|+|.+|.+..+++|||+.+|+++
T Consensus        31 ~s~~~~~I~Ap~d~VWalVr-dF~~-p~~w~p-~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P~~~i~ErL~~lDde~  107 (189)
T 3oji_A           31 TSLIAHRVDAPAHAIWRFVR-DFAN-PNKYKH-FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEK  107 (189)
T ss_dssp             EEEEEEEESSCHHHHHHHHS-CTTC-GGGTCT-TEEEEEECCC----CCCSTTCEEEEEECSSSSBSEEEEEEEEEETTT
T ss_pred             ceeEEEEEcCCHHHHHHHHh-CCCC-hhhCcc-ccceEEEEecCCCCccCCCCcEEEEEecCCCcCceEEEEEEEEeccC
Confidence            34566789999999999997 9999 789998 699999988 8875    99999999999877779999999999999


Q ss_pred             ceEEEEEEecCccccceeeEEEEEEeeecC---CC-----CceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044703           80 FSYKYSLIEGDVLMDKLEKISYDVKFEPTA---DG-----GSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENY  151 (179)
Q Consensus        80 ~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~---~g-----~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~y  151 (179)
                      |+|+|+|++|++   ++++|+++++|.|.+   +|     +|.+.|+..+++-+++.  ++   .+..++.++++.==+-
T Consensus       108 ~~~sY~Iieg~~---pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t--~e---~~~~~v~~v~~~gL~~  179 (189)
T 3oji_A          108 RILSFRVLGGEH---RLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNT--EE---DTRMFVDTVVKSNLQN  179 (189)
T ss_dssp             TEEEEEEEECSB---SSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSC--HH---HHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCC---ccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCC--HH---HHHHHHHHHHHHHHHH
Confidence            999999999986   389999999999864   23     57888887776544332  22   2344555555544433


Q ss_pred             Hh
Q 044703          152 LM  153 (179)
Q Consensus       152 ll  153 (179)
                      |.
T Consensus       180 L~  181 (189)
T 3oji_A          180 LA  181 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.93  E-value=2.3e-25  Score=168.35  Aligned_cols=139  Identities=13%  Similarity=0.075  Sum_probs=111.5

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      +++.+++|+|||++||+++. |+++ +|+|+|. +++|++++|+ +++|++|.+++.+|+   +++|+|+.+|+++++++
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~-d~~~-~~~w~p~-v~~~~~~~g~~~~~G~~r~~~~~~G~---~~~e~i~~~d~~~~~~~   76 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVG-DFSA-IHRWHPQ-VSAPTLRGASPHTPGAERVFGAGTEE---ELVERLVERDESARRLV   76 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHT-TSGG-GGGTCTT-CCCEEEESSCTTSTTCEEEESSSSSS---CEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEecCCHHHHHHHHh-CcCc-HHHhcCC-ceEEEEECCCCCCCCeEEEEEeCCCC---EEEEEEEEEeCCCCEEE
Confidence            78999999999999999997 9999 8999996 8999998876 689999999997664   79999999999999999


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK-GNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~-~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      |++++|+.   ++++|.++++|+|.++++|.++|+.+|++. .+  .+...+......+...++.|.+++.+
T Consensus        77 ~~~~~g~~---~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p~~--~~~~~~~~~~~~~~~~L~~Lk~~~e~  143 (151)
T 2le1_A           77 YTMPDPPF---PITNHRAVLEVVPRDDRHCTVVWTAMFDCSPET--ARELESVIGDGVFAVGLNALAERYGR  143 (151)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEESSSSCEEEEEEEEEEECHHH--HHHHHHHTTTTHHHHHHHHHHHHTTT
T ss_pred             EEEecCCC---CceeEEEEEEEEECCCCcEEEEEEEEEEecCCC--CCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999864   499999999999976778999999999973 11  11111111123455566666665544

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.74  E-value=2.5e-16  Score=122.37  Aligned_cols=140  Identities=10%  Similarity=0.134  Sum_probs=101.1

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEE-EEE--eecCce-eeeeeEEEeeeec
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIR-QIN--VVEGNQ-VKCSKNRVDALDL   77 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR-~~~--~~~g~~-~~~~kErl~~~D~   77 (179)
                      =+..++.++.|++||++||+++. |+.+ +|.|+|. +.+++++++++.  .+| .+.  ...+|. ..+..++  .+|+
T Consensus         1 Ma~~v~~si~I~a~~~~v~~lv~-Dv~~-~p~w~p~-~~~~~~~~~~~~--~~~~~l~~~~~~~G~~~~~ts~~--~~d~   73 (169)
T 3tvq_A            1 MAARTDNSIVVNAPFELVWDVTN-DIEA-WPELFSE-YAEAEILRQDGD--GFDFRLKTRPDANGRVWEWVSHR--VPDK   73 (169)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHT-CGGG-HHHHCTT-EEEEEEEEEETT--EEEEEEEECCCTTSCCCEEEEEE--EEEG
T ss_pred             CCCeEEEEEEecCCHHHHHHHHH-hhhH-HHHHHhh-eeEEEEEecCCC--EEEEEEEEEecCCCeEEEEEEEE--EEcC
Confidence            04678999999999999999997 9999 9999996 888998877542  333 233  223332 2333443  4899


Q ss_pred             CcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           78 ENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        78 ~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      ..+++.|+.++++    |++.|.++++|+|.++| |.|+|..+|+..++.+.+...+ +.....+...+.+|-+.+.
T Consensus        74 ~~~~I~~~~l~~g----Pf~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE  145 (169)
T 3tvq_A           74 GSRTVRAHRVETG----PFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIE  145 (169)
T ss_dssp             GGTEEEEEESSCT----TEEEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCC----ChhheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999986554    38999999999999887 9999999999987766555444 3333344555555555443

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.73  E-value=4.4e-16  Score=119.80  Aligned_cols=140  Identities=13%  Similarity=0.141  Sum_probs=101.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEE--eecCceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQIN--VVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~--~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      +.++.++.|++||++||+++. |+.+ +|.|+|. +.++++++++|..-.+| ++  ..-+|....+..+ ..+|+++++
T Consensus         3 ~~v~~si~I~a~~~~V~~lV~-Dve~-yP~~~p~-~~~~~vl~~~~~~~~~r-l~~~~~~~G~~~~~ts~-~~~d~~~~~   77 (159)
T 3tl1_A            3 GHTDNEITIAAPMELVWNMTN-DIEK-WPGLFSE-YASVEVLGRDDDKVTFR-LTMHPDADGKVWSWVSE-RVADPVTRT   77 (159)
T ss_dssp             SEEEEEEEESSCHHHHHHHHT-CGGG-HHHHCSS-EEEEEEEEECSSEEEEE-EEECCCTTSCCCEEEEE-EEEETTTTE
T ss_pred             CeeEEEEEecCCHHHHHHHHH-hHHH-hhhhhhC-ceEEEEEecCCCEEEEE-EEEEeccCceEEEEEEE-EEEcCCCCE
Confidence            368999999999999999997 9999 9999996 88899888764322333 43  3333332333334 258999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      +.|++++.+    |++++.++++|+|.++ ||.|+|..+|+..++.+.+...+ +.....+...+.+|-+.+.
T Consensus        78 I~~~~~~~g----Pf~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E  145 (159)
T 3tl1_A           78 VRAQRVETG----PFQYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIE  145 (159)
T ss_dssp             EEEEESSCT----TEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccCC----ChhhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            999987443    3899999999999977 69999999999987755554433 3333344555555554443

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.71  E-value=1.2e-15  Score=117.83  Aligned_cols=144  Identities=16%  Similarity=0.165  Sum_probs=103.6

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      +.+++.++.|++||++||+++. |+.+ +|.|+|. +.++++++++++ +..-.++...+|....+..++ .+|+..+++
T Consensus         4 M~~v~~si~I~ap~~~V~~~v~-D~~~-~p~~~P~-~~~~~v~~~~~~-~~~~~~~~~~~G~~~~~~s~~-~~~~~~~~i   78 (172)
T 3tfz_A            4 MRHVEHTVTVAAPADLVWEVLA-DVLG-YADIFPP-TEKVEILEEGQG-YQVVRLHVDVAGEINTWTSRR-DLDPARRVI   78 (172)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHH-CGGG-HHHHCSS-EEEEEEEEEETT-EEEEEEEEEETTEEEEEEEEE-EEETTTTEE
T ss_pred             CcEEEEEEEeCCCHHHHHHHHH-hHHH-HHhhCcc-cceEEEEecCCC-EEEEEEEEecCCEEEEEEEEE-EEeCCCCEE
Confidence            5789999999999999999997 9999 9999996 889998876532 222234455444333445553 378889999


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC-----CC--C-H---HHH-HHHHHHHHHHHHHHHH
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI-----VL--T-E---EEI-KEGKEKSLAMYKVVEN  150 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~-----~~--~-~---~~~-~~~~e~~~~~~k~ie~  150 (179)
                      .|++++++.   +++.+.+++++.|.++++|.|+|+.+|+..+..     .+  . +   ..+ +.+...+...+..|-+
T Consensus        79 ~~~~~~~~g---pf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~  155 (172)
T 3tfz_A           79 AYRQLETAP---IVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLG  155 (172)
T ss_dssp             EEEEEECCT---TEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCC---ChhhcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHH
Confidence            999997542   489999999999998789999999999986532     00  0 1   112 2333445566666666


Q ss_pred             HHhc
Q 044703          151 YLMQ  154 (179)
Q Consensus       151 yll~  154 (179)
                      ++.+
T Consensus       156 ~aE~  159 (172)
T 3tfz_A          156 EAER  159 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.69  E-value=6.4e-15  Score=107.35  Aligned_cols=140  Identities=21%  Similarity=0.257  Sum_probs=100.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.+++|+||+++||+++. |+.+ +|+|+|. +.+++++++++ .|....+++..++....+..++. .+++++++.
T Consensus         2 ~~~~~~~~i~ap~~~V~~~l~-d~~~-~~~w~p~-~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~   76 (147)
T 2d4r_A            2 PEVRAERYIPAPPERVYRLAK-DLEG-LKPYLKE-VESLEVVAREG-ARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNR   76 (147)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH-CHHH-HGGGCTT-EEEEEEEEEET-TEEEEEEEEEETTEEEEEEEEEE-EETTTTEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHh-Chhh-hhhhccc-ccEEEEEEeCC-CccEEEEEEEeCCceEEEEEEEE-EcCCCcEEE
Confidence            468889999999999999997 9999 9999996 78888776542 25666676654443233555554 457788999


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCC--CHHHH-HHHHHHHHHHHHHHHHHHhc
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVL--TEEEI-KEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~--~~~~~-~~~~e~~~~~~k~ie~yll~  154 (179)
                      |++.+|+     +..+.++++++|.++| |.++|+.+|++.+....  -...+ ...++.+..+++++.+++.+
T Consensus        77 ~~~~~g~-----~~~~~~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  144 (147)
T 2d4r_A           77 FFSPEGD-----FDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  144 (147)
T ss_dssp             EEEEEES-----CSEEEEEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCC-----hhheEEEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998875     4667899999999775 99999999998653211  11111 23335667777777776654

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.62  E-value=2.9e-14  Score=109.13  Aligned_cols=105  Identities=7%  Similarity=0.043  Sum_probs=86.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.+++|+|||++||+++. |+.+ +|.|.|. +.++++ +|.-.+|+.+.++...+.   .+.++|+++|+..+ ++
T Consensus        18 ~~i~~si~I~Appe~VW~~lt-D~~~-~~~W~p~-v~~~~~-~G~~~~G~~~~~~~~~~~---~~~~~v~~~~p~~~-~~   89 (155)
T 3ijt_A           18 MKFSFELAVNTKKEDAWTYYS-QVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDMP---ELAFTLVEVRENQC-FS   89 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTSC---CEEEEECCCBTTTE-EE
T ss_pred             EEEEEEEEEcCCHHHHHHHHh-Cccc-ccccchh-hEeeec-cCCCCCCCEEEEEeCCCC---cEEEEEEEEeCCcE-EE
Confidence            689999999999999999997 9999 9999996 888874 566578999888876554   57889999987765 77


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEE
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYY  122 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye  122 (179)
                      ++..-      +...|..+.+++|.++|+|.|+|+.+|.
T Consensus        90 ~~~~~------p~~~~~~~h~l~p~~~ggTrvt~~~~~~  122 (155)
T 3ijt_A           90 DLTAT------PFGNVLFEHEILENPDGTISLRHSVSLT  122 (155)
T ss_dssp             EEEEE------TTEEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred             EEEec------CCeEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence            76432      2446778889999878899999999993

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.48  E-value=4.1e-13  Score=100.44  Aligned_cols=138  Identities=17%  Similarity=0.229  Sum_probs=98.6

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC--C-CCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD--G-GAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd--g-~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      .+++.++.|++|+++||+++. |+.+ +|+|+|. ++++++++.+  | +.+....++..-++-...+..|+. +|+.++
T Consensus         2 ~~~~~s~~i~ap~~~v~~~v~-D~~~-~p~~~p~-~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~   77 (148)
T 1t17_A            2 HRHVVTKVLPYTPDQLFELVG-DVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDAR   77 (148)
T ss_dssp             CEEEEEEEESSCTHHHHHHHT-TTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTC
T ss_pred             CEEEEEEEecCCHHHHHHHHH-HHhh-HHhhCCC-cCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCc
Confidence            378889999999999999997 9999 9999996 7777777532  2 134455566654443344566766 677777


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      ++.++.++|+     ++.+.+++++.|.++| |.|++.++|+..+.  .....+ ....+.+..|.+++++.+.
T Consensus        78 ~i~~~~~~G~-----f~~~~g~w~f~~~~~g-t~v~~~~~~~~~~~--l~~~l~~~~~~~~~~~~~~~f~~r~~  143 (148)
T 1t17_A           78 SIDVSLLYGP-----FKRLNNGWRFMPEGDA-TRVEFVIEFAFKSA--LLDAMLAANVDRAAGKLIACFEARAQ  143 (148)
T ss_dssp             EEEEEESSTT-----SSCEEEEEEEEEETTE-EEEEEEEEECCSCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCC-----hhccEEEEEEEECCCC-eEEEEEEEEEECcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999874     6778999999999876 99999999997532  111122 2223345566666666553

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.48  E-value=4.5e-12  Score=95.71  Aligned_cols=147  Identities=12%  Similarity=0.114  Sum_probs=96.4

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeee--eEEEeeeecC
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCS--KNRVDALDLE   78 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~--kErl~~~D~~   78 (179)
                      |++ +++.++.|++|+++||+++. |+.. +|+|+|+ +.++++..|+   +....++...|+....+  +-++.++|+.
T Consensus         1 M~m-~i~~~~~i~ap~e~Vw~~l~-D~e~-~~~w~p~-~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   73 (162)
T 2pcs_A            1 MSL-NGNGSIELKGTVEEVWSKLM-DPSI-LSKCIMG-CKSLELIGED---KYKADLQIGIAAVKGKYDAIIEVTDIKPP   73 (162)
T ss_dssp             --C-EEEEEEEEESCHHHHHHHHT-CHHH-HHHHSTT-EEEEEEEETT---EEEEEEEECCGGGCEEEEEEEEEEEEETT
T ss_pred             CeE-EEeeEEEecCCHHHHHHHhc-CHHH-HHhhCCC-ceEeEEeCCC---eEEEEEEEEeeeEEEEEEEEEEEEecCCC
Confidence            554 48889999999999999997 9999 9999996 7788876442   12233444333211123  3355666665


Q ss_pred             cceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHHhcCc
Q 044703           79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yll~n~  156 (179)
                       +++.++....+..  +...+..+++++|.++++|.++|+++|+..+. .......+ ..++..+..+++.+.++|.++.
T Consensus        74 -~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~  150 (162)
T 2pcs_A           74 -YHYKLLVNGEGGP--GFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSK  150 (162)
T ss_dssp             -TEEEEEEEEEETT--EEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -cEEEEEEEecCCC--ccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence             4666665422111  25567899999996567899999999998653 22333344 3445567888888888887754


Q ss_pred             c
Q 044703          157 E  157 (179)
Q Consensus       157 d  157 (179)
                      .
T Consensus       151 ~  151 (162)
T 2pcs_A          151 Q  151 (162)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.45  E-value=5.1e-12  Score=95.64  Aligned_cols=140  Identities=17%  Similarity=0.170  Sum_probs=90.1

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--CceeeeeeEEEeeeecC
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GNQVKCSKNRVDALDLE   78 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~~~~~~kErl~~~D~~   78 (179)
                      ||..+++.++.|++|+++||+++. |+.+ +|+|+|. +.+++++++.   +  -.|....  |.....+.-++... +.
T Consensus         1 ~~~~~v~~s~~I~ap~e~V~~~~~-D~e~-~p~w~p~-~~~v~~~~~~---~--~~~~~~~~~G~~~~~~~~~v~e~-~p   71 (155)
T 3ggn_A            1 MGETVVRDAVTIGKPAEQLYAVWR-DLPG-LPLLMTH-LRSVEVLDDK---R--SRWTVEAPAPLGTVSWEAELTAD-EP   71 (155)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHHH-CGGG-HHHHSTT-CCEEEECSSS---E--EEEEEECCTTTCEEEEEEEEEEE-ET
T ss_pred             CCccEEEEEEEEcCCHHHHHHHHh-CHHH-hHHHhhh-ceEEEEecCC---e--eEEEEEecCCcceEEEEEEEEEe-cC
Confidence            899999999999999999999997 9999 9999996 8888876442   2  2344332  31223456666654 45


Q ss_pred             cceEEEEEEecCccccceeeEEEEEEeeec-CCCCceEEEEEEEEEcCCC-C-CCHHHHH-HHHHHHHHHHHHHHHHHhc
Q 044703           79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPT-ADGGSKNTMTSTYYTKGNI-V-LTEEEIK-EGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~-~~g~s~v~W~~~ye~~~~~-~-~~~~~~~-~~~e~~~~~~k~ie~yll~  154 (179)
                      ++++.++.++|+     ...+.+++++.|. ++++|.|+++++|++.++. . .-...+. .....+...++.+.+++..
T Consensus        72 ~~~i~~~~~~g~-----~~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~  146 (155)
T 3ggn_A           72 GKRIAWRSLPGA-----RIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQEL  146 (155)
T ss_dssp             TTEEEEEECTTC-----SSCEEEEEEEEECSSSSCEEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCC-----CcceEEEEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            668999998885     2346789999998 4668999999999985431 1 1001111 1233455555555555544

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.41  E-value=4.1e-11  Score=89.39  Aligned_cols=137  Identities=15%  Similarity=0.178  Sum_probs=87.1

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeee--EEEeeeecCcceE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSK--NRVDALDLENFSY   82 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~k--Erl~~~D~~~~~~   82 (179)
                      +++.++.|++|+++||+++. |+.. +|+|+|+ +.+++ ..|+   +....++...|.......  .++.++|+. +++
T Consensus        14 ~i~~~~~i~ap~e~Vw~~l~-D~~~-~~~w~p~-~~~~~-~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~i   85 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFLT-DPKR-FSRAFPG-FKSVE-VEDG---SFTIELRLSLGPLRGDARVRASFEDLEKP-SKA   85 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHT-CHHH-HGGGSTT-EEEEE-EETT---EEEEEEEEESSSSEEEEEEEEEEEEEETT-TEE
T ss_pred             EEeeEEEEcCCHHHHHHHHc-CHHH-HHhhCCC-ceEEE-ECCC---EEEEEEEEEEcceeEEEEEEEEEEecCCC-cEE
Confidence            79999999999999999997 9999 8999997 67777 4432   222233443332112233  344466654 567


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEIK-EGKEKSLAMYKVVENYL  152 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~~-~~~e~~~~~~k~ie~yl  152 (179)
                      .|+....+... +++ +..+++++|.+ ++|.++|+.+|+..+. .......++ .++..+..+++.+.+++
T Consensus        86 ~~~~~~~~~~~-~~~-~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~  154 (157)
T 2ns9_A           86 TVKGSGRGAGS-TLD-FTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKREL  154 (157)
T ss_dssp             EEEEEEECSSE-EEE-EEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCc-cEE-EEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77643222111 243 78899999987 6899999999997653 223333332 22334556666666555

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.33  E-value=1.3e-10  Score=88.66  Aligned_cols=137  Identities=14%  Similarity=0.081  Sum_probs=91.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEe---ecCce--eeeeeEEEeeeecC
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINV---VEGNQ--VKCSKNRVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~---~~g~~--~~~~kErl~~~D~~   78 (179)
                      .+++.++.|++||++||+++. |+.+ +|.+.|+++. .+- .++|   . ..|..   ..|+.  ......|.+ +|++
T Consensus         7 i~v~~s~~I~ap~e~v~~lv~-Dve~-w~~~yp~~~p-~~~-~~~~---~-~~~~~a~l~vg~~~~~~~~~s~~~-~~~~   77 (161)
T 3p9v_A            7 IELNRDLEIPASYDEVFDLLA-DVPK-SASHFPKVDK-LVD-LGNN---A-YRWEMEKVGVDKHAIQSVYACTYH-ADKE   77 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHT-CHHH-HHTTSTTEEE-EEE-EETT---E-EEEEECCBSSGGGCBCCEEEEEEE-EETT
T ss_pred             EEEEEEEEEcCCHHHHHHHHh-Chhh-hHhhCCCeEE-EEE-cCCC---c-eEEEEEEEeeeeEEEEEEEEEEEE-EcCC
Confidence            678899999999999999997 9999 8999997443 321 2332   2 23433   33332  123444433 7777


Q ss_pred             cceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           79 NFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      ++++.++.++|+.    .++..++++++|.++|+|.|+|.++|+.... +..-...+ ....+.+..|.+++++.+.
T Consensus        78 ~~~I~~~~~~g~~----~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~  150 (161)
T 3p9v_A           78 AGKITWSPIKGEG----NGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLK  150 (161)
T ss_dssp             TTEEEEEECTTST----TEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecCcc----ceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998763    3788899999999888899999999999732 22212122 1222344555566555443

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.07  E-value=2.3e-08  Score=72.96  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=91.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.++.|+||+++||+++. |... +++|.++..  +   +++-.+|..-.+....++..-.+..++.++++ ++++.
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~lt-d~~~-~~~W~~~~~--~---~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~   76 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEALV-NPEI-IKEYMFGTT--V---VSDWKEGSQIVWKGEWKGKAYEDKGTILQFNE-RSILQ   76 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHHHS-CTTH-HHHHSSSCE--E---ECCCSTTCEEEEEEEETTEEEEEEEEEEEEET-TTEEE
T ss_pred             ceEEEEEEECCCHHHHHHHHc-CHHH-hceeEcCCc--c---eeccCCCCEEEEEecCCCceecccEEEEEEcC-CCEEE
Confidence            578999999999999999997 9998 899963212  2   34445566666666655533356778888887 45777


Q ss_pred             EEEEec--CccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703           84 YSLIEG--DVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        84 Y~iieG--~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n  155 (179)
                      |+....  +....+-.....+++++|.++ +|.++|+.+..+.      ....+...+....++..|.++|...
T Consensus        77 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~------~~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           77 YSHFSPLTGKPDLPENYHVVTITLTALKK-GVEVELTQDNNET------EKEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             EECBCGGGCCCSCGGGSCEEEEEEEECSS-CEEEEEEEEEESS------HHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEEccCccCCCCCCCCceEEEEEEEEcCC-CeEEEEEEecCCc------hhhHhhHHhhHHHHHHHHHHHHhcc
Confidence            876432  100001234678899999854 7999998764421      1233344556778888888888653

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.05  E-value=1.6e-08  Score=74.18  Aligned_cols=139  Identities=13%  Similarity=0.140  Sum_probs=92.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee--cCceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV--EGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~~   81 (179)
                      .+++.++.|+||+++||+++. |... +++|+++.--.+...+++-.+|..-.+.+.  .++......-++.++++ +++
T Consensus         3 ~~~~~~~~i~ap~e~Vw~alt-d~~~-~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~~~~~~~v~~~~p-~~~   79 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAFL-DPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVP-GER   79 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHTT-CHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEET-TTE
T ss_pred             cEEEEEEEeCCCHHHHHHHhC-CHHH-HhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCEEEEEEEEEEEcC-CCE
Confidence            467788899999999999997 9998 899997531122334456566766666654  23322356778888876 457


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      +.|+...++...  -.....+++++|.++ +|.++++.++.+..   .   ..+...+....++..|.++|..
T Consensus        80 l~~~~~~~~~~~--~~~~~~~~~l~~~~~-gT~l~~~~~~~~~~---~---~~~~~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           80 IRYTDRFDDAGL--PGDMITTITLAPLSC-GADLSIVQEGIPDA---I---PPENCYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEEEEESCCC-----CEEEEEEEEEETT-EEEEEEEEECCCTT---S---CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEEeCCCC--CCcEEEEEEEEecCC-CEEEEEEEEcCCch---h---hHHHHHHHHHHHHHHHHHHHHh
Confidence            888876543211  113578899999864 79999998875321   1   1223345667778888888754

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=99.02  E-value=2.4e-09  Score=79.20  Aligned_cols=128  Identities=9%  Similarity=-0.000  Sum_probs=87.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.++.|+||+++||+++. |... +++|+|.    +   +++-.+|....+.+ +++   .+.-++.++++. +++.
T Consensus         8 ~~i~~~~~i~ap~e~Vw~~lt-d~~~-~~~W~~~----~---~~~~~~G~~~~~~~-~~g---~~~~~v~e~~p~-~~l~   73 (143)
T 1xn6_A            8 NDIKQTIVFNASIQKVWSVVS-TAEG-IASWFMP----N---DFVLEVGHEFHVQS-PFG---PSPCKVLEIDEP-NHLS   73 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTS-CSHH-HHTTSCC----B---CCCCCTTCEECBCC-TTC---CCCEEEEEEETT-TEEE
T ss_pred             CEEEEEEEEcCCHHHHHHHHh-CHhH-HHHhcCC----C---CcCcCCCCEEEEEE-cCC---CceEEEEEEeCC-CEEE
Confidence            468899999999999999997 9998 8999986    2   34445666655555 333   256788889874 5788


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc-CCCCCC-----HHHHHHHHHHHHHHH-HHHHHHHh
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK-GNIVLT-----EEEIKEGKEKSLAMY-KVVENYLM  153 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~-~~~~~~-----~~~~~~~~e~~~~~~-k~ie~yll  153 (179)
                      |+...+        ....+++++|.++|+|.++++.+..+. ++..+.     ....+...+.-..++ ..|.+||.
T Consensus        74 ~~~~~~--------~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le  142 (143)
T 1xn6_A           74 FSWDTD--------GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             EEETTT--------TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             EEEeCC--------CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence            887433        356789999987768999988775442 222111     223334445556666 77777663

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=99.01  E-value=5.1e-08  Score=74.00  Aligned_cols=146  Identities=12%  Similarity=0.081  Sum_probs=93.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      .+++.++.|+||+++||+++. |... +++|.+..--.+...++|-.+|..-.+.+. .+|..-...-++.++++ ++++
T Consensus        14 ~~i~~~~~i~ap~e~Vw~alt-dp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p-~~rl   90 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEAWT-KKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVM-DEYV   90 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHHTT-CHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEET-TTEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHC-CHHH-HHhccCCCCccceEEEecccCCCEEEEEEECCCCCEEEEEEEEEEEcC-CCEE
Confidence            578899999999999999997 9988 888885421123334466556665555554 23322245667888875 4578


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC--CCCC------HHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN--IVLT------EEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~--~~~~------~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      .|+...++..   -.....+++++|.++|+|.++++.+..+..+  ....      ....+...+....++..|.+||.+
T Consensus        91 ~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~  167 (171)
T 2il5_A           91 KMTIGMPGLS---ETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIET  167 (171)
T ss_dssp             EEEESCC--C---CCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCC---CCcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8887544321   1236788999998776899999987544311  1110      122233444566778888888765


Q ss_pred             C
Q 044703          155 N  155 (179)
Q Consensus       155 n  155 (179)
                      .
T Consensus       168 ~  168 (171)
T 2il5_A          168 S  168 (171)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=99.00  E-value=8e-08  Score=73.82  Aligned_cols=140  Identities=13%  Similarity=0.000  Sum_probs=89.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      .+++.++.|+||+++||+++. |... +++|++..--.+...+++-.+|..-.+.+. ++|......-++.++++.. ++
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~alt-dpe~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-rl   98 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAFT-DPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPE-RI   98 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHHH-CHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-EE
T ss_pred             cEEEEEEEECCCHHHHHHHhC-CHHH-HHhCCCCCCccceEEEEecccCCEEEEEEECCCCCEEEEEEEEEEEeCCC-EE
Confidence            468888999999999999997 9998 889975321123334456556665555544 2333234667888887654 67


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHhc
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEG-----KEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~-----~e~~~~~~k~ie~yll~  154 (179)
                      .|+...++... .-.....+++++|.++|+|.++++..|..       ++..+..     .+....++..|.++|..
T Consensus        99 ~~~~~~~~~~~-~~~~~~v~~~l~~~~~ggT~lt~~~~~~~-------~~~~~~~~~~~~~~Gw~~~L~~Lk~~le~  167 (178)
T 1xuv_A           99 ISTFEFEGLPE-KGHVILDTARFEALPGDRTKLTSHSVFQT-------IEDRDGMLQSGMEEGINDSYERLDELLEK  167 (178)
T ss_dssp             EEEEEETTSSS-SCCCEEEEEEEEEETTTEEEEEEEEECSS-------HHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCC-CCCcEEEEEEEEEcCCCCEEEEEEEEeCC-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            77765333110 01246788999998767899999988621       1111111     24566677788877754

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.92  E-value=9.3e-08  Score=70.60  Aligned_cols=132  Identities=11%  Similarity=0.039  Sum_probs=88.5

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccc-cCcceeEEEEEcCCCCCceEEEEEeec--CceeeeeeEEEeeeecCcce
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKL-MPQAVKSIEIFEGDGGAGSIRQINVVE--GNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~-~P~~v~sve~~eGdg~~GsvR~~~~~~--g~~~~~~kErl~~~D~~~~~   81 (179)
                      +++.++.|+||+++||+++. |... +++| .+..--.+...+++-.+|..-.+.+..  |+....+.-++.++++. ++
T Consensus         2 ~i~~~~~i~ap~e~Vw~alt-d~~~-~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p~-~~   78 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYT-TPED-IKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVEN-KR   78 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTT-CHHH-HHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETT-TE
T ss_pred             eEEEEEEeCCCHHHHHHHhC-CHHH-HhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcCC-CE
Confidence            57888999999999999997 9998 8999 653211233344665677666666543  32123467788888874 47


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE  157 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d  157 (179)
                      +.|+. .      +   ...+++++|.++ +|.++++.++.    .....   +...+....++..|+++|....+
T Consensus        79 l~~~~-~------g---~~~~~~l~~~~~-gT~l~~~~~~~----~~~~~---~~~~~Gw~~~L~~L~~~le~~~~  136 (142)
T 2lcg_A           79 IEYAF-G------D---RTAKVEFLEAPQ-GVTVRVSFVAE----TEYPV---EQQQQGWQAILNNFKRHVESHLE  136 (142)
T ss_dssp             EEEEE-T------T---EEEEEEEEEETT-EEEEEEEEECC----SSSCH---HHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEc-C------C---CEEEEEEEEcCC-CEEEEEEEecC----CHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence            88886 1      1   567899999864 79999886652    11112   23345667778888888876553

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.86  E-value=3.2e-08  Score=74.57  Aligned_cols=135  Identities=14%  Similarity=0.127  Sum_probs=89.2

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ..+++.++.|+||+++||+++. |... ++.|+|. ..+     ++-.+|..-.+.+. |+.  .+..++.++++ ++++
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~-~~~-----~~~~~Gg~~~~~~~-g~~--~~~~~v~e~~p-~~~l   75 (160)
T 2lak_A            8 SFVVRREAHLAAPPAAVFALMT-DPEK-ILRWMGT-EAE-----VEPEPGGLYLVNVT-GAR--FARGSFREVVP-VHRL   75 (160)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHH-CHHH-HHHTSCS-SEE-----ESCSTTCCEEECSS-TTC--CSSCCEEEEET-TTEE
T ss_pred             CceEEEEEEeCCCHHHHHHHhc-ChHH-HhhhCCC-cce-----eeccCCCEEEEEEe-CCc--eEEEEEEEEcC-CCEE
Confidence            3578999999999999999997 9998 8999986 322     33334444445554 332  45667888876 4567


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                      .|+...++....+-.....+++++|.++ +|.++|+.+-.      +.....+...+....++..|.++|...+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~------~~~~~~~~~~~gw~~~L~~Lk~~le~~~  142 (160)
T 2lak_A           76 AYSFGWDGSEVVPPGSSLVEIDLIEQGG-GTLLRLTHSGL------PSAEQCAGHEEGWAHYLGRLTEVAAGRD  142 (160)
T ss_dssp             EECCCCCSSSCCCTTSCEEEEEEEECSS-SEEEEEEEECC------CSHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEEEEecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEeCC------CCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7776433210001224678899999864 79999987621      1122333445567788899999987654

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.80  E-value=1.3e-06  Score=66.27  Aligned_cols=141  Identities=12%  Similarity=0.098  Sum_probs=90.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcc-eeEEEEEcCCCCCceEEEEEeec-CceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQA-VKSIEIFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~-v~sve~~eGdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~   81 (179)
                      .+++.++.|+||+++||+++. |... +++|++.. + .+...++|-.+|..-.+.+.. +|......-++.++++.. +
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~v~e~~p~~-r   87 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIWE-DPRQ-LERWWGPPTW-PATFETHEFTVGGKAAYYMTGPDGTKARGWWQFTTIEAPD-H   87 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-CHHH-HHTTSSCTTS-CEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEECSSS-E
T ss_pred             ceEEEEEEeCCCHHHHHHHhC-CHHH-HHhccCCCCc-ccceEEEeecCCCEEEEEEECCCCCEEeeEEEEEEEcCCC-E
Confidence            468889999999999999997 9988 78886532 2 123334565566655555442 333234667888887654 6


Q ss_pred             EEEEEEecCc--cc-cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH-----HHHHHHHHHHHHHHHHHh
Q 044703           82 YKYSLIEGDV--LM-DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK-----EGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        82 ~~Y~iieG~~--~~-~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~-----~~~e~~~~~~k~ie~yll  153 (179)
                      +.|+....+.  .+ ........+++++|.+ ++|.++++..|.+       ++..+     ...+....++..|.++|.
T Consensus        88 l~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~lt~~~~~~~-------~~~~~~~~~~~~~~Gw~~~L~~L~~~le  159 (172)
T 2ldk_A           88 LEFDDGFADEHGAPVDELGVTHATVKLEPLE-NRTRMTIISTFES-------EEQMQKMAEMGMEEGMREAIEQIDAVLS  159 (172)
T ss_dssp             EEEEEEEBCSSCCBCTTTCEEEEEEEEEEET-TEEEEEEEEEESC-------HHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEeecCCCCCccCCCccEEEEEEEEEcC-CCEEEEEEEEcCC-------HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            7777643221  10 0013467889999986 4799999987631       11111     124566778888988887


Q ss_pred             cCc
Q 044703          154 QNP  156 (179)
Q Consensus       154 ~n~  156 (179)
                      ...
T Consensus       160 ~~~  162 (172)
T 2ldk_A          160 EPA  162 (172)
T ss_dssp             CCS
T ss_pred             HhH
Confidence            654

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.80  E-value=2.6e-07  Score=67.54  Aligned_cols=126  Identities=13%  Similarity=0.171  Sum_probs=85.2

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      +++.++.|+||+++||+++. |... +++|.+.   .+   +++-.+|..-.+.+....  ....-++.++++. +++.|
T Consensus         2 ~i~~~~~i~ap~e~Vw~alt-d~~~-~~~W~~~---~~---~~~~~~Gg~~~~~~~~~~--~~~~~~v~~~~p~-~~l~~   70 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAFV-DPEK-IGGFWFS---SS---SERWEQGKTITLRYEEYD--AELNINIERVEDN-QLIAF   70 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHHH-CTTT-GGGTSSS---EE---SSCCCTTCEEEEECGGGT--C-CEEEEEEEETT-TEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHc-CHHH-hcccCCC---CC---cccccCCCEEEEEEcCcC--ceEEEEEEEEcCC-CEEEE
Confidence            47889999999999999997 9999 8999764   22   456566766666654321  1234467777765 46778


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                      +..+|          ..+++++|.+ ++|.++++....+..    +.+......+.-..++..|.+||....
T Consensus        71 ~~~~g----------~~~~~l~~~~-~gT~l~~~~~~~~~~----~~~~~~~~~~GW~~~l~~L~~~le~g~  127 (135)
T 3q6a_A           71 TWGAH----------PITIQFEESE-AGTVVTTTEKDFDTQ----DVKQLLGQKEGWVYMLSCLKVYLEHGV  127 (135)
T ss_dssp             EETTE----------EEEEEEEEET-TEEEEEEEECCCCSS----CHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEcCC----------eEEEEEEECC-CCEEEEEEEcCCCcc----hHHHHhhchhCHHHHHHHHHHHHhcCc
Confidence            76421          6789999975 578888875432211    122223345667788899999998776

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.79  E-value=5.6e-07  Score=67.14  Aligned_cols=140  Identities=13%  Similarity=-0.005  Sum_probs=84.3

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEE--EEcCCCCCceEEEEEeec-CceeeeeeEEEeeeecCcc
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIE--IFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve--~~eGdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~   80 (179)
                      .+++.++.|+||+++||+++. |... +++|.+..--.+.  ..+.+-.+|..-.+.+.. +|..-...-++.++++.. 
T Consensus         2 ~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-   78 (152)
T 3eli_A            2 ADLRLEREFAVAPEALFAWVS-DGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQ-   78 (152)
T ss_dssp             CEEEEEEEESSCHHHHHHHTT-CHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTT-
T ss_pred             ceEEEEEEECCCHHHHHHHHc-CHHH-HhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCEEEEEEEEEEEcCCC-
Confidence            367778899999999999997 9998 8888763211111  123454566555555542 332234667788887654 


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      ++.|+....+....+-.....+++++|.++ +|.++++-.  ..    ++.+..+...+.-..++..|++||.
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~l~~~--~~----~~~~~~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           79 SVGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHR--EL----GDDEMSLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEE--SC----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEc--cC----CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677775432211111234567889999865 588877533  11    1222333445566778888888774

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.77  E-value=3.3e-07  Score=68.06  Aligned_cols=132  Identities=12%  Similarity=0.058  Sum_probs=85.8

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccc-cCcceeEEEEEcCCCCCceEEEEEee-cCce-eeeeeEEEeeeecCcce
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKL-MPQAVKSIEIFEGDGGAGSIRQINVV-EGNQ-VKCSKNRVDALDLENFS   81 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~-~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~-~~~~kErl~~~D~~~~~   81 (179)
                      +++.++.|+||+++||+++. |... +++| .+..--.+...++|-.+|..-.+.+. ++|. ...+.-++.++++.. +
T Consensus         3 ~i~~~~~i~Ap~e~Vw~alt-dpe~-~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~-~   79 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWN-EPAH-IMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTND-L   79 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHH-CHHH-HHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEETTT-E
T ss_pred             EEEEEEEECCCHHHHHHHHC-CHHH-HhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeCCC-E
Confidence            46788899999999999997 9998 8899 65311123334566555655445544 2332 123566788887755 6


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                      +.|+. .|        ....+++++|.+ ++|.++++.++   .. ...   .+...+....++..|+++|....
T Consensus        80 l~~~~-~g--------~~~v~~~l~~~~-~gT~l~~~~~~---~~-~~~---~~~~~~Gw~~~L~~L~~~le~~~  137 (144)
T 2l8o_A           80 IEYTI-GD--------GRKVRIVFTHTG-DTTNIVESFDP---EE-TNP---RELQQSGWQAILNSFKSYTENNL  137 (144)
T ss_dssp             EEEEE-TT--------CCEEEEEEEECS-SSEEEEEEECC---CS-SSC---HHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             EEEEe-CC--------CeEEEEEEEEcC-CCEEEEEEEeC---CC-HHH---HHHHHHHHHHHHHHHHHHHHhHh
Confidence            88885 22        146789999975 57888887654   11 111   22334566778888888887654

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.76  E-value=6.5e-07  Score=68.23  Aligned_cols=142  Identities=12%  Similarity=0.062  Sum_probs=89.8

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcc--eeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCc
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQA--VKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLEN   79 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~--v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~   79 (179)
                      ..++..++.|+||+++||+++. |... +.+|.+..  .. +...++|-.+|..-.+.+. ++|..-.+.-++.++++..
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~a~T-dpe~-l~~W~~~~~~~~-~~~~~~d~~~GG~~~~~~~~~~G~~~~~~g~v~ev~p~~   84 (166)
T 3put_A            8 HTTFVIERRLTAPVARVFRAWS-TPES-KRQWFACHGEWV-PLEYALDFRPGGTERNYTADTDGLLHAYDARYIDIVPDT   84 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-CHHH-HHHHHTCC---C-CSEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT
T ss_pred             cceEEEEEEECCCHHHHHHHhC-CHHH-HHhcCCCCCCce-eeEEEeCcccCCEEEEEEECCCCCEEEEEEEEEEEcCCc
Confidence            3678889999999999999997 9988 88887431  11 1112345445544444443 3333224667888887654


Q ss_pred             ceEEEEEEe--cCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703           80 FSYKYSLIE--GDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        80 ~~~~Y~iie--G~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                       ++.|+..-  ++.   +......+++++|.+ ++|.++++....+.++....+    ...+.-..++..|++||....
T Consensus        85 -rlv~t~~~~~~~~---~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~~~~----~~~~GW~~~L~~L~~~le~~~  154 (166)
T 3put_A           85 -RIIYAYEMKLGQT---RISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYGDNG----ARLQGTEIGLDNLELFLVRET  154 (166)
T ss_dssp             -EEEEEEEEEETTE---EEEEEEEEEEEEECS-SSEEEEEEEEEEEETTCCCTT----HHHHHHHHHHHHHHHHHHHHC
T ss_pred             -EEEEEEEecCCCC---CCCceEEEEEEEECC-CCEEEEEEEEecCccchhhHH----HHHHHHHHHHHHHHHHHhcCC
Confidence             56666431  121   233456789999986 579999998876543221222    233566778888888887654

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.73  E-value=9.6e-07  Score=67.53  Aligned_cols=140  Identities=13%  Similarity=0.031  Sum_probs=88.0

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcc-eeEEEEEcCCCCCceEEEEEeec-CceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQA-VKSIEIFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~-v~sve~~eGdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~   81 (179)
                      .++..++.|+||+++||+++. |... +++|++.. + .+...++|-.+|..-.+.+.. +|......-++.++++.. +
T Consensus        10 ~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-r   85 (178)
T 1xfs_A           10 LDLMLKRELAVPVNLVWRGLT-EPEL-LKKWFVPKPW-SISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEK-R   85 (178)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-CHHH-HTTTSSCTTC-EEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTT-E
T ss_pred             ceEEEEEEecCCHHHHHHHhC-CHHH-HhhCCCCCCe-eeeEEEEeeECCcEEEEEEECCCCCEEEEEEEEEEEeCCC-E
Confidence            467888999999999999997 9998 88997532 2 223345665677666666543 332234566788887654 6


Q ss_pred             EEEEEEecC--ccccce-----e----eEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHH-----HHHHHHHHH
Q 044703           82 YKYSLIEGD--VLMDKL-----E----KISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKE-----GKEKSLAMY  145 (179)
Q Consensus        82 ~~Y~iieG~--~~~~~~-----~----~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~-----~~e~~~~~~  145 (179)
                      +.|+..-++  .....+     .    ....+++++|.++ +|.++++.+|.       +++..+.     ..+....++
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~-------~~~~~~~~~~~~~~~Gw~~~l  157 (178)
T 1xfs_A           86 LIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHN-------TPGQRKLHEEMGFHEGWGTTI  157 (178)
T ss_dssp             EEEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECS-------SHHHHHHHHTTTHHHHHHHHH
T ss_pred             EEEEEEEcCCCCccccccccccccccccEEEEEEEEECCC-CEEEEEEEEcC-------CHHHHHHHHhhhHHHHHHHHH
Confidence            777753211  110000     0    3578899999864 79999988752       1111211     134566777


Q ss_pred             HHHHHHHhcC
Q 044703          146 KVVENYLMQN  155 (179)
Q Consensus       146 k~ie~yll~n  155 (179)
                      ..|.++|...
T Consensus       158 ~~L~~~le~~  167 (178)
T 1xfs_A          158 TQLEELLKQE  167 (178)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            8888887553

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.73  E-value=8.1e-07  Score=67.14  Aligned_cols=141  Identities=18%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcc--eeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecC
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQA--VKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLE   78 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~--v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~   78 (179)
                      .-.++..++.|+||+++||+++. |... +++|.+..  +. +...++|-.+|..-.+.+. ++|..-.+.-++.++++.
T Consensus         6 ~~~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~   82 (161)
T 3rd6_A            6 IHSTFTIERTYPQSPDRVFHAFA-DKAT-VRRWRVDGDGFT-VAEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPD   82 (161)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHH-CHHH-HHHHTCCCCC----CEEEECCSTTCEEEEEECSTTSCCEEEEEEEEEEETT
T ss_pred             cCceEEEEEEECCCHHHHHHHhc-CHHH-HhhccCCCCCce-eeEEEEccCcCCEEEEEEECCCCCEEEEEEEEEEEcCC
Confidence            34688889999999999999997 9998 88998532  21 2223455456655555553 233222466678888765


Q ss_pred             cceEEEEEEe--cCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           79 NFSYKYSLIE--GDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        79 ~~~~~Y~iie--G~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      . ++.|+..-  .+.   +......+++++|.++ +|.++++.+.-..++... .+   ...+.-..++..|++||..
T Consensus        83 ~-rl~~~~~~~~~~~---~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~-~~---~~~~GW~~~L~~L~~~le~  151 (161)
T 3rd6_A           83 Q-RIVFSYRMAIGPQ---PMSASLTTVELTPSGD-GTRLTYTEQGAFFDGVDS-AK---GREEGTRGLLEALAAELQK  151 (161)
T ss_dssp             T-EEEEEEEEEETTE---EEEEEEEEEEEEEETT-EEEEEEEEEEEEETTCCC-HH---HHHHHHHHHHHHHHHHC--
T ss_pred             C-EEEEEEEecCCCC---CCCceEEEEEEEECCC-CEEEEEEEEecCcchhhh-HH---HHHHHHHHHHHHHHHHHhh
Confidence            4 56676531  221   1344568899999865 699999988754332111 11   2345666777777777654

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.69  E-value=2.4e-07  Score=68.81  Aligned_cols=95  Identities=11%  Similarity=0.115  Sum_probs=69.5

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ..+++.++.|+||+++||+++. |... +++|+|+ .      +++-.+|..-.+.+ +++   .+.-++.++++. +++
T Consensus         4 ~~~i~~~~~i~Ap~e~Vw~alt-d~~~-~~~W~~~-~------~~~~~~Gg~~~~~~-~~g---~~~~~v~e~~p~-~~l   69 (146)
T 1xn5_A            4 LPDIKKEVRFNAPIEKVWEAVS-TSEG-LAFWFME-N------DLKAETGHHFHLQS-PFG---PSPCQVTDVERP-IKL   69 (146)
T ss_dssp             CCCEEEEEEESSCHHHHHHHTT-SHHH-HHTTSCC-B------CCCSCTTCEEEEEC-SSC---EEEEEEEEEETT-TEE
T ss_pred             CcEEEEEEEEcCCHHHHHHHHh-ChhH-HHHhcCC-C------CCCccCCCEEEEEe-cCC---ceEEEEEEEeCC-cEE
Confidence            3578899999999999999997 9998 8999985 1      34445666655665 333   367788888875 467


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEE
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST  120 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~  120 (179)
                      .|+... .       ....+++++|.++ +|.++++.+
T Consensus        70 ~~~~~~-~-------~~~~~~~l~~~~~-gT~l~~~~~   98 (146)
T 1xn5_A           70 SFTWDT-D-------GWSVTFHLKEEEN-GTIFTIVHS   98 (146)
T ss_dssp             EEEETT-T-------TEEEEEEEEECSS-SEEEEEEEE
T ss_pred             EEEEeC-C-------CEEEEEEEEEcCC-CEEEEEEEE
Confidence            787742 1       1457888999854 688888765

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.69  E-value=1e-06  Score=65.99  Aligned_cols=135  Identities=16%  Similarity=0.158  Sum_probs=84.2

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      |...+++.++.|+||+++||+++. |... +++|.|.    +   +++-.+|..-.+....|+   .+.-++.++++.. 
T Consensus         6 ~~~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~----~---~~~~~~Gg~~~~~~~~g~---~~~g~v~e~~p~~-   72 (151)
T 3q63_A            6 TENRTVVVERQISHPPEKLWRALT-QPHL-IEEWLMK----N---DFKPAVGHRFNISADWGG---VLDCEVLAVEPNK-   72 (151)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHHH-CHHH-HHHHSCE----E---CCCSSTTCEEEEECTTSC---EEEEEEEEEETTT-
T ss_pred             CCCCeEEEEEEeCCCHHHHHHHHc-CHHH-HHhhcCc----C---CCccCCCCEEEEECCCCC---EEEEEEEEEeCCC-
Confidence            345678899999999999999997 9998 8999984    2   345456655445422232   4666778887655 


Q ss_pred             eEEEEEEecC--ccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703           81 SYKYSLIEGD--VLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        81 ~~~Y~iieG~--~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n  155 (179)
                      ++.|+...++  ...  -..-..+++++|.++ +|.++++....+..    .........+.-..++..|++||...
T Consensus        73 ~l~~~~~~~~~~~~~--~~~s~v~~~l~~~~~-gT~l~l~~~g~~~~----~~~~~~~~~~GW~~~L~~L~~~le~~  142 (151)
T 3q63_A           73 TLSYTWNLAHQDPAF--DLRSVVTFTLTPTPT-GTHLRMEQSGFRPD----QRRAYGGAKMGWPQFFEKLEQLLDRT  142 (151)
T ss_dssp             EEEEECBBCCSSTTT--CBCCEEEEEEEECSS-SEEEEEEEECCCTT----CHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEEecCCCCCCC--CCCeEEEEEEEEcCC-CEEEEEEEeCCCcc----hHHHHHhhhhCHHHHHHHHHHHHhcc
Confidence            6777764332  111  123457788999865 68888886532211    11222233455667788888887553

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.67  E-value=2.1e-06  Score=63.68  Aligned_cols=131  Identities=11%  Similarity=0.008  Sum_probs=84.1

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccc-cCc-ceeEEEEEcCCCCCceEEEEEee-cCce-eeeeeEEEeeeecCcc
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKL-MPQ-AVKSIEIFEGDGGAGSIRQINVV-EGNQ-VKCSKNRVDALDLENF   80 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~-~P~-~v~sve~~eGdg~~GsvR~~~~~-~g~~-~~~~kErl~~~D~~~~   80 (179)
                      +++.++.|+||+++||+++. |... +++| ++. -+ .+...++|-.+|..-.+.+. ++|. .-.+.-++.++++. +
T Consensus         2 ~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~-~   77 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAWN-DPDC-IARWNAASSDW-HTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTFTRVEAP-T   77 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHHH-CHHH-HTTSSSCSTTE-EEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETT-T
T ss_pred             EEEEEEEeCCCHHHHHHHhC-CHHH-HhccCCCCCCc-ccceEEECCCCCCEEEEEEECCCCCceEEeEEEEEEEeCC-C
Confidence            57888999999999999997 9998 8899 653 22 22223455445554444443 2332 12356678888765 4


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                      ++.|+. .|        ....+++++|.+ ++|.++.+.++.  +  ...   .+...+....++..|+++|....
T Consensus        78 ~l~~~~-~~--------~~~~~~~l~~~~-~gT~l~~~~~~~--~--~~~---~~~~~~Gw~~~L~~L~~~le~~~  136 (144)
T 2lgh_A           78 RLSFVM-DD--------GREVDVQFASEP-GGTWVQETFDAE--T--SHT---PAQQQAGWQGILDNFKRYVEAAG  136 (144)
T ss_dssp             EEEEEE-TT--------CCEEEEEEEEET-TEEEEEEEEECC--T--TSC---HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEe-cC--------CcEEEEEEEEcC-CCEEEEEEEECC--C--HHH---HHHHHHHHHHHHHHHHHHHhhCc
Confidence            788885 22        146788999985 478888776652  1  111   22334566777888888886543

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.67  E-value=2.3e-06  Score=64.95  Aligned_cols=142  Identities=12%  Similarity=0.073  Sum_probs=87.6

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcce
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (179)
                      ..+++.++.|+||+++||+++. |... +++|.+..--.+...+++-.+|..-.+.+. ++|..-.+.-++.++++.. +
T Consensus        12 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-r   88 (164)
T 3pu2_A           12 ATRLEFRRHFAATPEQLWAALT-SPAL-LPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRTRGLTGRVILAEPPH-R   88 (164)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHH-CTTT-GGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTT-E
T ss_pred             CceEEEEEEECCCHHHHHHHhc-CHHH-HhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCEEEEEEEEEEEcCCC-E
Confidence            3578889999999999999997 9998 889987421123334456556655445543 2332224566778887654 6


Q ss_pred             EEEEEEe-cCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhc
Q 044703           82 YKYSLIE-GDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        82 ~~Y~iie-G~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll~  154 (179)
                      +.|+..- ++-.+   .....+++++|.++ +|.++++.+|... +  ..+..+ ....+.-..++..|++||.+
T Consensus        89 l~~t~~~~~~~~~---~~s~vt~~l~~~~~-gT~l~l~~~~~~~-~--~~~~~~~~~~~~GW~~~L~~L~~~l~~  156 (164)
T 3pu2_A           89 LIHSELYDEDWTG---GETLVTLQLLPVEG-GTELAMAVDYATP-E--ARDAVAASAMATEMEEAYRHLDVMLAA  156 (164)
T ss_dssp             EEEEEBCC---CC---SCEEEEEEEEEETT-EEEEEEEEECSST-T--HHHHHHTSTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCCCC---CCEEEEEEEEEcCC-CEEEEEEEEeCCH-H--HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            7777531 21111   12577899999865 6999998885311 0  001101 12345667788888888865

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.67  E-value=1.2e-06  Score=66.24  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=86.3

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcc--eeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcc
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQA--VKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~--v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~   80 (179)
                      .++..++.|+||+++||+++. |... +++|.+..  +. +...+.|-.+|..-.+.+. ++|....+.-++.++++.. 
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~g~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-   84 (162)
T 3q64_A            9 STFIIERLYPAPPSKVFFALG-NADA-KRRWFTDPDNPM-PGRFEMDFRVGGKEVNAGGPKDGPIHVYTATYQDIVPDQ-   84 (162)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HHHHSSCTTSCC-GGGCEECCSTTCEEEEEECCTTSCCEEEEEEEEEEETTT-
T ss_pred             ceEEEEEEeCCCHHHHHHHHC-CHHH-HhhcCCCCCCcc-ceEEEECCccCCEEEEEEECCCCCEEEEEEEEEEEcCCC-
Confidence            578888999999999999997 9998 88998542  11 1111244345555555553 2332234667788887654 


Q ss_pred             eEEEEEEe--cCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           81 SYKYSLIE--GDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        81 ~~~Y~iie--G~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      ++.|+..-  .+.   +......+++++|.++ +|.++++.+.-+.++....+    ...+.-..++..|++||..
T Consensus        85 rl~~~~~~~~~~~---~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~~~----~~~~GW~~~L~~L~~~le~  152 (162)
T 3q64_A           85 RIVYSYDMLFGET---RISVSLATIQLFAEGE-GTRLVLTEQGAFLDGHDTPS----TREHGTGVLLDLLDAFLDK  152 (162)
T ss_dssp             EEEEEEEEEETTE---EEEEEEEEEEEEEETT-EEEEEEEEEEEEETTSSCHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCC---CCCceEEEEEEEEcCC-CEEEEEEEEecCccchhHHH----HHHHHHHHHHHHHHHHHhh
Confidence            56666532  221   1344568899999865 69999998865433211112    2334566667777777654

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.64  E-value=3.8e-06  Score=64.23  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=86.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcc-eeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQA-VKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~-v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (179)
                      .+++.++.|+||+++||+++. |... +++|++.. + .+...++|-.+|..-.+.+. ++|......-++.++++.. +
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~t-dpe~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-r   91 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAFT-RAEI-LDQWWAPKPW-KAKTKSMDFKEGGTWLYAMVGPNGEEHWSICEYAIIKPIE-R   91 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHHT-CHHH-HHHSSSSSSS-EEEEEEECCSTTCEEEEEEECSSSCEEEEEEEECCCCSSS-E
T ss_pred             ceEEEEEEEcCCHHHHHHHhC-CHHH-HhhCcCCCCc-cceEEEEeccCCCEEEEEEECCCCCEEEeEEEEEEEcCCC-E
Confidence            468889999999999999997 9998 88886532 2 23334456456655445443 2333234667888887655 5


Q ss_pred             EEEEEEecC---ccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHH-----HHHHHHHHHHHHHHHHh
Q 044703           82 YKYSLIEGD---VLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKE-----GKEKSLAMYKVVENYLM  153 (179)
Q Consensus        82 ~~Y~iieG~---~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~-----~~e~~~~~~k~ie~yll  153 (179)
                      +.|+..-++   ...........+++++|.+ ++|.++.+..|.       +++..+.     ..+....++..|++||.
T Consensus        92 l~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~-------~~~~~~~~~~~~~~~Gw~~~L~~L~~~le  163 (175)
T 2lf2_A           92 FTGKDGFTDASGKLNTEMPRSNWDMRFIDKG-EITEVQYHISYD-------DVAQLEATIQMGFKEGITMAMENLDELLV  163 (175)
T ss_dssp             EEEEEEEESSTTCCCTTSCCEEEEEEEEEET-TEEEEEEEEECS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEecC-------CHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            667653221   1100122467889999985 478888887641       2222211     23456677788888875


Q ss_pred             c
Q 044703          154 Q  154 (179)
Q Consensus       154 ~  154 (179)
                      .
T Consensus       164 ~  164 (175)
T 2lf2_A          164 S  164 (175)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.61  E-value=6e-08  Score=72.70  Aligned_cols=128  Identities=9%  Similarity=0.001  Sum_probs=82.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.++.|+||+++||+++. |... +++|+|. +      +++-.+|....+.+. ++   .+.-++.++++. +++.
T Consensus        10 ~~i~~~~~i~Ap~e~Vw~alt-d~~~-~~~W~~~-~------~~~~~~Gg~~~~~~~-~g---~~~~~v~e~~p~-~~l~   75 (152)
T 2kew_A           10 PDITKSITLEAPIQKVWETVS-TSEG-IAKWFMP-N------DFQLKEGQEFHLQSP-FG---PSPCKVLAVQAP-TELS   75 (152)
T ss_dssp             CCEEEEEEECSCHHHHHHHSS-SSHH-HHHHHCS-C------CCCSCSSCCBCSSSS-CC---SCCBEEEEEETT-TEEE
T ss_pred             cEEEEEEEECCCHHHHHHHHh-CHHH-HHHhcCC-C------CCCCCCCCEEEEEec-CC---ceEEEEEEEeCC-cEEE
Confidence            468999999999999999997 9998 8999986 1      344345554444443 33   256678888876 4677


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEE-EEEcC-CCCC----CHHHHHHHHHHHHHHH-HHHHHHHhc
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST-YYTKG-NIVL----TEEEIKEGKEKSLAMY-KVVENYLMQ  154 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~-ye~~~-~~~~----~~~~~~~~~e~~~~~~-k~ie~yll~  154 (179)
                      |+...+        ....+++++|.++ +|.++++.+ |...+ +.+.    .....+...+.-..++ ..|.+||..
T Consensus        76 ~~~~~~--------~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~  144 (152)
T 2kew_A           76 FEWDTE--------GWVVTFQLEDLGE-KTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEE  144 (152)
T ss_dssp             EECTTS--------CCEEEEEEECCSS-CEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred             EEEccC--------CEEEEEEEEECCC-CEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            775332        2457888989865 688887654 32110 1110    1222333445666777 788777754

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.58  E-value=3.1e-06  Score=63.89  Aligned_cols=145  Identities=14%  Similarity=0.085  Sum_probs=88.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      .+++.++.|+||+++||+++. |... +++|++..=-.+...++|-.+|..-.+.+. ++|..- +.-++.++++.. ++
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~t-dpe~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~-~~g~v~e~~p~~-rl   83 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYT-KREL-FEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMISY-TIAEYLQVDAPY-YI   83 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHH-CHHH-HTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEEE-EEEEESCCBTTT-EE
T ss_pred             ceEEEEEEeCCCHHHHHHHhC-CHHH-HHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCEE-EEEEEEEEcCCC-EE
Confidence            478889999999999999997 9998 888865311123334566566655555443 333322 677888887755 67


Q ss_pred             EEEEEecCc--ccc-ceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHHHHHhcCc
Q 044703           83 KYSLIEGDV--LMD-KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        83 ~Y~iieG~~--~~~-~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie~yll~n~  156 (179)
                      .|+...++.  .+. .......+++++|.+ ++|.++.+..|..   ....+..+. ...+....++..|+++|.+..
T Consensus        84 ~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~---~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  157 (164)
T 2l9p_A           84 EYLDYFATSKGEKDTSMPGMHITLNFEEVK-GKTTVTSTSTFPT---ESAAQQAIDMGVETGMNSTLNQLEKLLNQKL  157 (164)
T ss_dssp             EEEEEEEBTTBSCCSSSCCEEEEEEECCCS-SSEEEEEEEECSS---TTHHHHHHHHTHHHHHHHHHHHHHHHHHSSC
T ss_pred             EEEEEecCCCCCccCCCCceEEEEEEEECC-CCEEEEEEEEcCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            777543211  110 122367889999875 4798888876431   101111111 134566778888888886643

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.50  E-value=1.1e-05  Score=61.63  Aligned_cols=139  Identities=14%  Similarity=0.145  Sum_probs=86.0

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCc-ceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQ-AVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~-~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (179)
                      .++..+..|+||+++||+++. |... +.+|++. -. .+...+.|-.+|..-.+.+. ++|..-...-++.++++.. +
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~T-dpe~-l~~W~~p~~~-~~~~~~~d~r~GG~~~~~~~~~~G~~~~~~g~~~ev~p~~-r   88 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIYA-DPRQ-LEKVWGPPSH-PATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPH-S   88 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-SHHH-HHHHHCCTTS-CCEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-E
T ss_pred             CEEEEEEEEcCCHHHHHHHhC-CHHH-HhhEeCCCCe-eeeEEEEcccCCcEEEEEEECCCCCEEeeEEEEEEEeCCc-E
Confidence            457888999999999999997 9888 7777543 22 22333455455544444443 3332224667888887754 5


Q ss_pred             EEEEEEe----cCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH-----HHHHHHHHHHHHHHHHH
Q 044703           82 YKYSLIE----GDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK-----EGKEKSLAMYKVVENYL  152 (179)
Q Consensus        82 ~~Y~iie----G~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~-----~~~e~~~~~~k~ie~yl  152 (179)
                      +.|+-.-    |.+.. .......+++++|.+ ++|.++++..|.       +.+..+     ...+.-...+..|++||
T Consensus        89 lv~t~~~~~~~g~p~~-~~~~s~vt~~l~~~~-~gT~lt~~~~~~-------~~~~~~~~~~~g~~~GW~~~L~~L~~~l  159 (168)
T 3uid_A           89 FSFLDGFADEDFNPNT-DLPVSTNVYTFTEHD-GGTRATYVGTYA-------SAEALQQVLDMGVIEGASSAINQIDALL  159 (168)
T ss_dssp             EEEEEEEECTTSCBCS-SCCCEEEEEEEEEET-TEEEEEEEEECS-------CHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred             EEEEEeeccCCCCcCC-CCCcEEEEEEEEECC-CCEEEEEEEecC-------CHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence            6666532    32211 012357889999985 579999886442       111121     13456778889999988


Q ss_pred             hcC
Q 044703          153 MQN  155 (179)
Q Consensus       153 l~n  155 (179)
                      .+.
T Consensus       160 ~~~  162 (168)
T 3uid_A          160 TAT  162 (168)
T ss_dssp             CSC
T ss_pred             Hhh
Confidence            763

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.48  E-value=3.4e-06  Score=65.60  Aligned_cols=133  Identities=8%  Similarity=0.060  Sum_probs=85.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.++.|+||+++||+++. |... +++|+|. ....+     -.+|..-.+.+.. .   ...-++.++++.. ++.
T Consensus        36 ~~i~~~~~i~Ap~e~VW~alt-dp~~-l~~W~~~-~~~~d-----~~~Gg~~~~~~~~-~---~~~~~v~e~~p~~-rl~  102 (184)
T 2nn5_A           36 IYFGTERAISASPQTIWRYLT-ETDK-LKQWFPE-LEIGE-----LGVNGFWRFILPD-F---EETMPFTDYAEEK-YLG  102 (184)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HHHHCTT-EEEEE-----CSTTCEEEEEETT-E---EEEEEEEEEETTT-EEE
T ss_pred             cEEEEEEEeCCCHHHHHHHHc-CHHH-HHHhCCC-ccccc-----cCCCCEEEEEEeC-C---CceEEEEEecCCC-EEE
Confidence            368889999999999999997 9998 8999985 22222     2334333444432 1   3455788887765 666


Q ss_pred             EEEEecCccccceeeEEEEEEeee-cCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEP-TADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYASL  162 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p-~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~~~  162 (179)
                      |+.- +         ...+++++| . +++|.++++-.|..  +.+....   ...+....++..|.++|...+-.....
T Consensus       103 ~~~~-~---------~~v~~~l~~~~-~~gT~l~~~~~~~~--g~~~~~~---~~~~GW~~~L~~Lk~~le~g~~~p~~~  166 (184)
T 2nn5_A          103 VTWD-T---------GIIYFDLKEQA-PHQTLLVFSESLPE--NFTTPRH---KDIAGWSIVLNRLKQVVETPDAAPEKI  166 (184)
T ss_dssp             EEET-T---------EEEEEEEEEEE-TTEEEEEEEEEECT--TCSSCHH---HHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred             EEEc-C---------eEEEEEEEECC-CCCEEEEEEEeccC--Cccchhh---HHHHHHHHHHHHHHHHHhcCCCCcccC
Confidence            7652 1         467888999 5 45799998844322  1111122   234567778899999998755443333


Q ss_pred             eec
Q 044703          163 EFS  165 (179)
Q Consensus       163 ~~~  165 (179)
                      .|+
T Consensus       167 ~~~  169 (184)
T 2nn5_A          167 DFP  169 (184)
T ss_dssp             CHH
T ss_pred             CcH
Confidence            455

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.44  E-value=2.3e-06  Score=66.73  Aligned_cols=134  Identities=10%  Similarity=0.068  Sum_probs=88.3

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC--------------ceee
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG--------------NQVK   66 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g--------------~~~~   66 (179)
                      |...+++.++.|+||+++||+++. |... +++|.+..       +.+-.+|..-.+.+...              +...
T Consensus        16 ~~~~~i~~~~~i~Ap~e~Vw~alt-dpe~-~~~W~~~~-------~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~   86 (191)
T 2k5g_A           16 LDAQSIRFERLLPGPIERVWAWLA-DADK-RARWLAGG-------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPI   86 (191)
T ss_dssp             SCCSSEEEEEEESSSSHHHHHHHH-CHHH-HTTTSCCC-------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCE
T ss_pred             cCCCeEEEEEEeCCCHHHHHHHHc-CHHH-HhhcCCCC-------CCCccCCCEEEEEEcCCccccccCcccccccCCCc
Confidence            445678899999999999999997 9998 89999851       34545676666666431              1112


Q ss_pred             eeeEEEeeeecCcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEE-EEEcCCCCCCHHHHHHHHHHHHHHH
Q 044703           67 CSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST-YYTKGNIVLTEEEIKEGKEKSLAMY  145 (179)
Q Consensus        67 ~~kErl~~~D~~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~-ye~~~~~~~~~~~~~~~~e~~~~~~  145 (179)
                      .+.-++.++++.. ++.|+...++.   . .....+++++|.++ +|.++++.+ |.   +    .+......+.-..++
T Consensus        87 ~~~g~v~e~~pp~-rl~~~~~~~~~---~-~~~~v~~~l~~~~~-gT~l~~~~~~~~---~----~~~~~~~~~GW~~~L  153 (191)
T 2k5g_A           87 VARHTLLRCEPPR-VLALTWGGGAG---E-APSEVLFELSEAGE-QVRLVLTHTRLA---D----RAAMLDVAGGWHAHL  153 (191)
T ss_dssp             EEEEEEEEEETTT-EEEEECCCCSS---S-SCCEEEEEEEECSS-SEEEEEEEECCC---S----HHHHHHHTTTTTTHH
T ss_pred             eeEEEEEEecCCC-EEEEEeecCCC---C-CCEEEEEEEEEcCC-CEEEEEEEecCC---C----HHHHHHHHHhHHHHH
Confidence            3566788887655 67777644331   1 13467888899854 688887765 32   1    222222334456778


Q ss_pred             HHHHHHHhcCc
Q 044703          146 KVVENYLMQNP  156 (179)
Q Consensus       146 k~ie~yll~n~  156 (179)
                      ..|.++|...+
T Consensus       154 ~~L~~~le~~~  164 (191)
T 2k5g_A          154 AVLAGKLAGQA  164 (191)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHCCCC
Confidence            88888887665

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.41  E-value=5.3e-05  Score=58.23  Aligned_cols=143  Identities=11%  Similarity=0.065  Sum_probs=89.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecC--c-eeeeeeEEEeeeecCcc
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEG--N-QVKCSKNRVDALDLENF   80 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g--~-~~~~~kErl~~~D~~~~   80 (179)
                      ..+..+..|++||+++|+++. |... .|+|.|. +.++++++.+++ -.+-.+.+...  . +-..+-.+-..-|.++ 
T Consensus        27 ~~~k~~~~v~~s~~~v~~~l~-D~~~-~~~W~~~-~~~~~vle~~~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g-  101 (189)
T 3qsz_A           27 REFRGEVRLKAAADDVVKVLR-DANA-FRQWMPD-VAASELLKATDT-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGDG-  101 (189)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH-CGGG-GGGTSTT-EEEEEEEEECSS-EEEEEEEECCSSSCCCEEEEEEEEEEECTTS-
T ss_pred             EEEEEEEEEECCHHHHHHHHH-hHHH-hhhHHHh-cCEEEEEeecCC-ceEEEEEeecCCCcCCcceEEEEEEEECCCC-
Confidence            456778899999999999996 9998 9999995 888898876432 23333443322  1 1112222212123332 


Q ss_pred             eEEEEEEecCc--cc-cc---eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHh
Q 044703           81 SYKYSLIEGDV--LM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        81 ~~~Y~iieG~~--~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll  153 (179)
                      ++.........  ++ .+   ...+.+.+.++| ++++|.+++....++.+.  .|.-.+ ..+++.+..++++|.+++.
T Consensus       102 ~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~--iP~~lvn~~~~~~~~~~l~~L~k~~~  178 (189)
T 3qsz_A          102 AITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS--IPSWLANQTVVETPFGTLKALRSHLR  178 (189)
T ss_dssp             CEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS--SCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44333332211  10 11   567889999999 888999999999988753  334343 3445567788888888775


Q ss_pred             c
Q 044703          154 Q  154 (179)
Q Consensus       154 ~  154 (179)
                      +
T Consensus       179 ~  179 (189)
T 3qsz_A          179 Q  179 (189)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.35  E-value=5.6e-06  Score=63.03  Aligned_cols=97  Identities=7%  Similarity=-0.018  Sum_probs=57.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc-eE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF-SY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~-~~   82 (179)
                      ...+.+++|++|+++||+.+. |+.+ +|.|+|+ ++++ +.+.+    +-+..+..+.|   .++=|.+. |.+-. ..
T Consensus        27 ~~~~~si~I~ap~eeVy~~~~-D~e~-lP~W~~~-l~~~-~~~~~----~~w~a~~~p~G---~v~v~~~~-~~~~gv~d   94 (156)
T 2qpv_A           27 QSRIIHLSVEKPWAEVYDFAA-NPGN-MPRWAAG-LAGG-LEADG----EDWIAKGGPLG---EVRVNFAP-HNEFGVID   94 (156)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH-CGGG-GGGTCGG-GTTC-CEEET----TEEEEECSSSC---EEEEEECC-CCSSCBCC
T ss_pred             cceEEEEEEcCCHHHHHHHHH-Chhh-HHHHHHh-hhhh-cccCC----CcEEEeccCCC---cEEEEEec-CCCceEEE
Confidence            467899999999999999997 9999 9999997 6664 22221    11222212222   22222221 22112 22


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEE
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTS  119 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~  119 (179)
                      .+..+.++..      -...++|.|.++ ||.|+|+.
T Consensus        95 ~~~~l~~g~~------~~~~~rv~p~g~-GTeV~~tl  124 (156)
T 2qpv_A           95 HVVTLPDGLK------VYNALRVTPNGS-GTEVSFTL  124 (156)
T ss_dssp             EEEECTTSCE------EEEEEEEEEETT-EEEEEEEE
T ss_pred             EEEecCCCcE------EEEEEEEEeCCC-CEEEEEEE
Confidence            3444443321      223578889865 59999998

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.24  E-value=1.6e-05  Score=58.65  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=81.7

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      |...+++.++.|+||+++||+++. |... +++|.+..   +   +.|-.+|..  +.+..|.    +.=++.++++. +
T Consensus         8 m~~~~i~~~~~i~ap~e~Vw~alt-dp~~-~~~W~~~~---~---~~d~~~Gg~--~~~~~G~----~~g~v~e~~p~-~   72 (145)
T 1x53_A            8 IPTCKITLKETFLTSPEELYRVFT-TQEL-VQAFTHAP---A---TLEADRGGK--FHMVDGN----VSGEFTDLVPE-K   72 (145)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHTT-CHHH-HHHHSCSC---C---BCCCSTTCC--CBBTTTT----EECCEEEEETT-T
T ss_pred             ccccEEEEEEEECCCHHHHHHHhC-CHHH-HHHhcCCC---c---eEECCCCCE--EEEECCe----eEEEEEEEeCC-C
Confidence            455788999999999999999997 9988 88998642   1   233233322  2333332    33356667654 4


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHH-HHHHHHHHHhcCc
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLA-MYKVVENYLMQNP  156 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~-~~k~ie~yll~n~  156 (179)
                      ++.|+-...+...  -.....+++++|.+ ++|.++++....+..      + .....+.... ++..|.++|-...
T Consensus        73 ~l~~~~~~~~~~~--~~~~~v~~~l~~~~-~gT~l~~~~~~~~~~------~-~~~~~~Gw~~~~l~~L~~~le~g~  139 (145)
T 1x53_A           73 HIVMKWRFKSWPE--GHFATITLTFIDKN-GETELCMEGRGIPAP------E-EERTRQGWQRYYFEGIKQTFGYGA  139 (145)
T ss_dssp             EEEEEEEETTSCT--TCCEEEEEECCBCS-SCEEEEEEEEEEEHH------H-HHHHHHTTHHHHHHHHHHHTCCCC
T ss_pred             EEEEEEecCCCCC--CCcEEEEEEEEECC-CCEEEEEEEECCCHH------H-HHHHHhchhHHHHHHHHHHHhcCc
Confidence            6777754433211  11246788888864 579999885544421      1 2233445565 7888888886654

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.23  E-value=1.1e-05  Score=62.73  Aligned_cols=123  Identities=8%  Similarity=0.046  Sum_probs=80.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .++..++.|++|+++||+++. |... +++|++..       ++|-.+|..-.+.+..+       =++.++++. +++.
T Consensus        21 ~~i~~~r~i~Appe~Vw~alT-dpe~-l~~W~~p~-------~~d~~~Gg~~~~~~~~~-------g~v~e~~pp-~rl~   83 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSACT-DPNR-INRWFIEP-------KGDLREGGNFALQGNAS-------GDILRCEPP-RRLT   83 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HHHHSCCE-------ESCCSTTCEEEESSSCE-------EECCEEETT-TEEE
T ss_pred             ceEEEEEEECCCHHHHHHHHc-ChHH-HhhccCCC-------ccCCCCCCEEEEEecCC-------EEEEEEcCC-cEEE
Confidence            578889999999999999997 9988 88998641       35545555444433222       255667654 5777


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNP  156 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~  156 (179)
                      |+...++.     .....+++++|.+ ++|.++++.+..+       ++......+.-..++..|++||...+
T Consensus        84 ~tw~~~~~-----~~s~vt~~l~~~~-~gT~Ltl~~~~~~-------~e~~~~~~~GW~~~L~~L~~~L~G~~  143 (181)
T 4fpw_A           84 ISWVYEGK-----PDSEVELRLSEEG-DGTLLELEHATTS-------EQMLVEVGVGWEMALDFLGMFIRGDL  143 (181)
T ss_dssp             EEEBCTTS-----CCEEEEEEEEEET-TEEEEEEEEEESC-------HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             EEEEcCCC-----CcEEEEEEEEECC-CcEEEEEEEEcCC-------HHHHHHHHHhHHHHHHHHHHHhCCCC
Confidence            88754432     1346789999974 5788888766532       12233445566788899999985443

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=98.20  E-value=0.00017  Score=56.29  Aligned_cols=146  Identities=15%  Similarity=0.019  Sum_probs=93.6

Q ss_pred             EEEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCcee---eeeeE-EEeeeecC
Q 044703            4 FTVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQV---KCSKN-RVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~---~~~kE-rl~~~D~~   78 (179)
                      ..+..+..| ++|++++++++. |... .++|.|. +.++++++-+|  ..+..+.+....+.   ..+-. ....+|+.
T Consensus        52 ~~~k~~~~i~~~~~~~v~~~l~-d~~~-r~~Wd~~-~~~~~vle~~~--~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~  126 (214)
T 1ln1_A           52 YEYKVFGVLEDCSPTLLADIYM-DSDY-RKQWDQY-VKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDME  126 (214)
T ss_dssp             EEEEEEEEETTSCHHHHHHHHH-CHHH-HHHHCTT-EEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECST
T ss_pred             EEEEEEEEECCCCHHHHHHHHc-CHHH-HHHHHHH-HhhEEEeccCC--CEEEEEEEEcCCCCCCceEEEEEEEEecccC
Confidence            456778899 599999999996 9887 8999995 88888887654  45655655532111   12222 22234434


Q ss_pred             cceEE---EEEEecC-cc--ccc--eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHH
Q 044703           79 NFSYK---YSLIEGD-VL--MDK--LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVE  149 (179)
Q Consensus        79 ~~~~~---Y~iieG~-~~--~~~--~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie  149 (179)
                      ..++.   ..-++.+ .+  ...  ...+.+.+.++|.++++|.+++....++.+.  .|.-.+ ..++..+..+++.|.
T Consensus       127 g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~--iP~~l~n~~~~~~~~~~l~~l~  204 (214)
T 1ln1_A          127 GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMA  204 (214)
T ss_dssp             TCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc--ccHHHHHHHHHHHhHHHHHHHH
Confidence            32221   1112211 11  111  4557888999998888899999999988853  334343 345557788999999


Q ss_pred             HHHhcCc
Q 044703          150 NYLMQNP  156 (179)
Q Consensus       150 ~yll~n~  156 (179)
                      +++.+.+
T Consensus       205 k~~~~y~  211 (214)
T 1ln1_A          205 RACQNYL  211 (214)
T ss_dssp             HHHHTC-
T ss_pred             HHHHhcc
Confidence            9998665

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.13  E-value=3e-05  Score=58.74  Aligned_cols=134  Identities=14%  Similarity=0.096  Sum_probs=76.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .++..+..|+||+++||+++. |... +.+|+++..  ++   .|-.+|..  +.+..|    .+.=++.++++.. ++.
T Consensus        19 ~~i~~~r~~~ap~e~Vw~A~T-dpe~-l~~W~~g~~--~~---~d~~~GG~--~~~~~G----~~~g~v~ev~p~~-rlv   84 (158)
T 3ni8_A           19 MSFEITEEYYVPPEVLFNAFT-DAYT-LTRLSRGSL--AE---VDLKVGGK--FSLFSG----SILGEFTEITKPH-KIV   84 (158)
T ss_dssp             CCEEEEEEESSCHHHHHHHHH-CHHH-HHHHTTTSC--CE---ECCSTTCE--EEETTT----TEEEEEEEEETTT-EEE
T ss_pred             ceEEEEEEECCCHHHHHHHhc-CHHH-HHhhcCCCc--cE---EEccCCCE--EEEecC----CEEEEEEEEeCCc-EEE
Confidence            467788899999999999996 9888 889987312  22   22233332  233334    2344666777654 566


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHH-HHHHHHHHHh
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLA-MYKVVENYLM  153 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~-~~k~ie~yll  153 (179)
                      |+---.+....  ..-..+++++|.++++|.++.+-+-.+..+........+...+.-.. ++..|.+||-
T Consensus        85 ~tw~~~~~~~~--~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~Le  153 (158)
T 3ni8_A           85 EKWKFRDWNEC--DYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILG  153 (158)
T ss_dssp             EEEEETTSCSS--CCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             EEEEecCCCCC--CcEEEEEEEEecCCCCEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHhC
Confidence            65432222111  12467889999655678888876533322211111112223345555 5788877764

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=98.07  E-value=0.00015  Score=56.88  Aligned_cols=122  Identities=9%  Similarity=0.067  Sum_probs=78.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .++..+..+++|+++||+++- |... +.+|++.    +   ++|-.+|..-.+.+...       -++.++|+.. ++.
T Consensus        32 ~~l~i~R~f~Ap~e~VW~AlT-dpe~-l~~W~~~----~---~~d~r~GG~~~~~~~~~-------g~v~ev~pp~-rL~   94 (192)
T 2luz_A           32 RSIIIRQRYDAPVDEVWSACT-DPNR-INRWFIE----P---KGDLREGGNFALQGNAS-------GDILRCEPPR-RLT   94 (192)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HTTTSCC----E---EECCSTTSEEEETTSEE-------EEEEEEETTT-EEE
T ss_pred             eEEEEEEEeCCCHHHHHHHHc-CHHH-HheeeCC----C---cccCccCcEEEeecccc-------ceEEEEecCe-eEE
Confidence            367778889999999999996 9998 8899874    2   24544554333322211       2566677654 677


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n  155 (179)
                      |+--..+.     ..-..+++++|.++ +|.++.+-+..       +++........=...+..|++||-..
T Consensus        95 ~tw~~~~~-----~~~~vt~~L~~~g~-gT~Ltl~h~~~-------~~~~~~~~~~GW~~~Ld~L~~~L~g~  153 (192)
T 2luz_A           95 ISWVYEGK-----PDSEVELRLSEEGD-GTLLELEHATT-------SEQMLVEVGVGWEMALDFLGMFIRGD  153 (192)
T ss_dssp             EEEEESSS-----CEEEEEEEEEEETT-EEEEEEEEEES-------CHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeecCC-----CCceEEEEEEEcCC-cEEEEEEEECC-------CHHHHHHHhccHHHHHHHHHHHhCCC
Confidence            77543332     12356889999865 68887765432       23333333445567889999999754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.01  E-value=1.8e-05  Score=69.98  Aligned_cols=107  Identities=11%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCC--CCceEEEEEeecCceeeeeeEEE--eeeecCcc
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG--GAGSIRQINVVEGNQVKCSKNRV--DALDLENF   80 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg--~~GsvR~~~~~~g~~~~~~kErl--~~~D~~~~   80 (179)
                      +++.++.|++|++.||+.+. |..+ +++|.|. ...++++.+.|  .+|++- +.+..+  . .+.-++  .++|+.. 
T Consensus         2 ~~~~~~~i~~p~~~v~~~~~-~~~~-~~~~~p~-~~~~~~~~~~~~~~~G~~~-~~~~~~--~-~w~~~~~~t~~~~~~-   73 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWHT-RKGA-VARLTPP-FIPLNPITQAERLADGTTI-FSLPAG--L-KWVARHDLSGFLNGS-   73 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHHH-STTH-HHHHSCT-TSSCEECSCCSCSSSCEEE-EECSTT--C-EEEEEECGGGCBTTT-
T ss_pred             eEEEEEEccCCHHHHHHHhc-Ccch-HHHhCCC-CCceEEecCCCCCcCCeEE-EecCCC--c-EEEEEEccccccCCC-
Confidence            46788999999999999997 9999 8999997 66788775443  578777 776644  2 455556  6666555 


Q ss_pred             eEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEE
Q 044703           81 SYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYY  122 (179)
Q Consensus        81 ~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye  122 (179)
                      .+...+..|++..  +.++..+..|++.++ ||.++..++|.
T Consensus        74 ~F~d~~~~gp~~~--~~~w~h~h~f~~~~~-gt~~~d~~~~~  112 (516)
T 3oh8_A           74 RFTDVCLTAPVKA--LANWRHVHNFVDQDG-GTLITDSVSTR  112 (516)
T ss_dssp             EEEEECCSCSSGG--GSSCEEEEEEEEETT-EEEEEEEEECS
T ss_pred             eEEEEeccCcccc--eeeeEEEEEEEEcCC-CcEEEEEEEee
Confidence            7788888776432  888999999999865 69999999987

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.75  E-value=5.8e-05  Score=56.59  Aligned_cols=137  Identities=11%  Similarity=0.172  Sum_probs=73.7

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcce------eEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecC
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAV------KSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLE   78 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v------~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~   78 (179)
                      .+..++.|+||+++||+++. |  . +.+|++..+      ..+++. ..|  |+. .+...+|...  ..=++.++|+.
T Consensus         5 ~i~~~r~~~Ap~e~Vw~A~T-d--~-l~~W~~p~~~~~~~~~~~~~d-r~G--G~~-~~~~~~G~~~--~~g~v~ev~pp   74 (155)
T 1zxf_A            5 FVRHSVTVKADRKTAFKTFL-E--G-FPEWWPNNFRTTKVGAPLGVD-KKG--GRW-YEIDEQGEEH--TFGLIRKVDEP   74 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHHT-T--C-SSSSSSGGGSTTTTCSSCEEE-TTT--TEE-ECCCTTTSCC--CCEEEEEEETT
T ss_pred             eEEEEEEEeCCHHHHHHHHH-h--h-HHhhcCCCccccCCCceEEEE-CCC--CEE-EEECCCCCeE--eEEEEEEECCC
Confidence            57788899999999999997 7  4 567764323      234433 222  333 2222233211  12256677765


Q ss_pred             cceEEEEE-EecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCC-CHHHH-HHHHHHHHHHHHHHHHHHhc
Q 044703           79 NFSYKYSL-IEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVL-TEEEI-KEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        79 ~~~~~Y~i-ieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~-~~~~~-~~~~e~~~~~~k~ie~yll~  154 (179)
                      . ++.|+- .+++....+-.....+++++|.++|+|.++.+-....  ...+ .+..+ ....+.-..++..|+++|.+
T Consensus        75 ~-rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~--~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~  150 (155)
T 1zxf_A           75 D-TLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFD--RMGTKHAKRVRNGMDKGWPTILQSFQDKIDE  150 (155)
T ss_dssp             T-EEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSST--TSCHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             C-EEEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEeccc--ccccchhHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            5 677773 2332100011124578999998775588777655321  1101 11111 11222456788888888754

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.51  E-value=0.0039  Score=46.26  Aligned_cols=101  Identities=11%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             CccEEEEEEEEEcCCH-HHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCc
Q 044703            1 MGVFTVTDEYTSPISP-ARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLEN   79 (179)
Q Consensus         1 M~~~~v~~ei~i~apa-~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~   79 (179)
                      |.-.+++.++.|+||+ ++||++++ +..+ |..|+.+.+.    ..|.     .-.+.....+   ...=+|.++|+.+
T Consensus         1 m~k~~i~~e~~i~A~~~~~VW~~IS-tPeg-L~~Wfad~v~----~~g~-----~~~F~w~~~~---~~~~~v~~~~~~~   66 (136)
T 2lio_A            1 MKKEKIHLEYLLNATSKNILWSAIS-TPTG-LEDWFADKVV----SDDK-----TVTFCWGKTE---QRQAGIVAIRAYS   66 (136)
T ss_dssp             CCCEEEEEEEEECTTSCTHHHHGGG-SHHH-HTTTSSSEEE----EETT-----EEEEESSSSS---EEEEEEEEEETTT
T ss_pred             CCCCcEEEEEEecCChHHHHHHHhC-Chhh-hhcccCCCCc----ccCc-----eEEEEeCCCC---cEeEEEEEEcCCC
Confidence            7678999999999999 99999997 9988 7889986432    2232     2233333312   3455677776655


Q ss_pred             ceEEEEEEecCccccceeeEEEEEEeeecCC-CCceEEEEEEEE
Q 044703           80 FSYKYSLIEGDVLMDKLEKISYDVKFEPTAD-GGSKNTMTSTYY  122 (179)
Q Consensus        80 ~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~-g~s~v~W~~~ye  122 (179)
                       .++|+=...+     ..++..++++.+.+. +++.++.+ .|-
T Consensus        67 -~i~FrW~~~~-----~~~~~~e~~l~~~~~t~~~~L~vt-dFa  103 (136)
T 2lio_A           67 -FIRFHWLDDE-----NERDYFEIKMSYNELTGDYVLEIT-DFS  103 (136)
T ss_dssp             -EEEEEESSSS-----SSSCEEEEEEEECTTTSCEEEEEE-EEE
T ss_pred             -EEEEEccCCC-----CCceEEEEEEEecCCCCcEEEEEe-cCC
Confidence             7888875432     233556777776643 35666666 444

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=96.59  E-value=0.18  Score=39.40  Aligned_cols=146  Identities=8%  Similarity=-0.058  Sum_probs=81.7

Q ss_pred             EEEEEEEcCCHHHHH-HHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--Cce---eeeeeEEEeeeecCc
Q 044703            6 VTDEYTSPISPARLF-KALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GNQ---VKCSKNRVDALDLEN   79 (179)
Q Consensus         6 v~~ei~i~apa~kvW-~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~~---~~~~kErl~~~D~~~   79 (179)
                      +..+..+++|+++|| .++. |... .++|-+. +.++++++--+.--.|-.....+  ..+   -..+--|-...++..
T Consensus        68 ~k~~~~v~~~~~~v~~~~~~-d~~~-r~~Wd~~-~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~  144 (229)
T 1em2_A           68 FILKTFLPCPAELVYQEVIL-QPER-MVLWNKT-VTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDR  144 (229)
T ss_dssp             EEEEEEESSCHHHHHHHTTT-CHHH-HTTTCTT-EEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSE
T ss_pred             EEEEEEecCCHHHHHHHHHh-Cccc-hhhcccc-cceEEEEEecCCCeEEEEEEecCcCCCCcCCCeeEEEEEEEEcCCE
Confidence            345567899999999 7775 8887 8999995 88888876421111232222222  121   112222222223333


Q ss_pred             ceEEEEEEecCccc---c--ceeeEEEEEEeeecC--CCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 044703           80 FSYKYSLIEGDVLM---D--KLEKISYDVKFEPTA--DGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENY  151 (179)
Q Consensus        80 ~~~~Y~iieG~~~~---~--~~~~y~~ti~v~p~~--~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~y  151 (179)
                      ..+...=++.+..+   .  -...+.+-+.+.|.+  +++|.++|....++.+..  |.-.. ..+...+..+++.|.++
T Consensus       145 ~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~l~n~~~~~~~~~~~~~Lr~~  222 (229)
T 1em2_A          145 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRL--PRYLIHQSLAATMFEFAFHLRQR  222 (229)
T ss_dssp             EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222322211   0  123345667888854  357999999888887643  33333 34455677888888888


Q ss_pred             HhcCc
Q 044703          152 LMQNP  156 (179)
Q Consensus       152 ll~n~  156 (179)
                      +.+..
T Consensus       223 ~~~~~  227 (229)
T 1em2_A          223 ISELG  227 (229)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            76643

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=96.45  E-value=0.023  Score=46.37  Aligned_cols=151  Identities=13%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcC-CCCCceEEEEEeecC-ce---eeeeeEEEee--eec
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEG-DGGAGSIRQINVVEG-NQ---VKCSKNRVDA--LDL   77 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eG-dg~~GsvR~~~~~~g-~~---~~~~kErl~~--~D~   77 (179)
                      .+..+..+++|++.||+++. |... .+.|.+. ++++++++- ++. -.|-.+....- ++   -..+--|-..  .++
T Consensus        89 ~~k~~~~v~~~~~~v~~~L~-D~~~-R~~WD~~-~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~  164 (258)
T 3fo5_A           89 SFHMEMVVHVDAAQAFLLLS-DLRQ-RPEWDKH-YRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCDN  164 (258)
T ss_dssp             EEEEEEEESSCHHHHHHHHH-CGGG-GGGTCTT-CCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSST
T ss_pred             EEEEEEEEeCCHHHHHHHHh-Cchh-HhHhhhh-ccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccCC
Confidence            45677789999999999997 9998 8999995 888888753 221 12333333321 11   1122222221  112


Q ss_pred             Cc-ceEEEEEEecC-ccc-cc---eeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH--HHHHHHHHHHHHHH
Q 044703           78 EN-FSYKYSLIEGD-VLM-DK---LEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK--EGKEKSLAMYKVVE  149 (179)
Q Consensus        78 ~~-~~~~Y~iieG~-~~~-~~---~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~--~~~e~~~~~~k~ie  149 (179)
                      .+ ..+...=++-+ .++ .+   ...+.+-+-+.|.++++|.|.+...-+|.  . .|--..+  .+-..+...++++.
T Consensus       165 G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG--~-lP~~~~n~~g~s~~~~~t~~~~~  241 (258)
T 3fo5_A          165 GDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPG--V-LNYVTTNVAGLSSEFYTTFKACE  241 (258)
T ss_dssp             TCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGG--G-HHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             CCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCC--C-CCceEEeccccchHHHHHHHHHH
Confidence            22 33333323322 221 11   24566889999998888998887666652  1 1111111  11124466788999


Q ss_pred             HHHhcCccccccc
Q 044703          150 NYLMQNPEEYASL  162 (179)
Q Consensus       150 ~yll~n~d~~~~~  162 (179)
                      +||..+.|..+..
T Consensus       242 ~fl~~~~~~~~~~  254 (258)
T 3fo5_A          242 QFLLDNRNDLAPS  254 (258)
T ss_dssp             HHHHHTC------
T ss_pred             HHHHhcccccccc
Confidence            9999998764443

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=96.34  E-value=0.24  Score=38.53  Aligned_cols=147  Identities=17%  Similarity=0.097  Sum_probs=82.3

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--Cce---eeeeeEEEeeeecCcc
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GNQ---VKCSKNRVDALDLENF   80 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~~---~~~~kErl~~~D~~~~   80 (179)
                      +..+..+++|+++||+++..|... .++|.+. +.++++++--+.--.|-......  ..+   -..+--|-..-++...
T Consensus        57 ~k~~~~v~~~~~~v~~~l~~d~~~-r~~Wd~~-~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~  134 (221)
T 3p0l_A           57 FRLEVVVDQPMERLYEELVERMEA-MGEWNPN-VKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRRGSTC  134 (221)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTGGG-TTTSCTT-CSEEEEEEECSSSEEEEEEEECC---CCSCCEEEEEEEEEEECSSCE
T ss_pred             EEEEEEEcCCHHHHHHHHHhccch-hhhcCcc-hheEEEEEecCCCeEEEEEeeccccCCccCCceEEEEEEEEEcCCeE
Confidence            456677899999999987328777 7899985 88888887532111222222222  111   1112111111222222


Q ss_pred             eEEEEEEecCc-cc-cc---eeeEEEEEEeeecCCC--CceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044703           81 SYKYSLIEGDV-LM-DK---LEKISYDVKFEPTADG--GSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVENYL  152 (179)
Q Consensus        81 ~~~Y~iieG~~-~~-~~---~~~y~~ti~v~p~~~g--~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie~yl  152 (179)
                      .+...=++-+. ++ .+   ...+.+-+.+.|.++|  +|.++|....++.+-  .|.-.++ .+......+++.+.+++
T Consensus       135 vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~~~  212 (221)
T 3p0l_A          135 VLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRKRL  212 (221)
T ss_dssp             EECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111122221 11 11   2345567888998776  799999988888765  3444443 33467778888888888


Q ss_pred             hcCc
Q 044703          153 MQNP  156 (179)
Q Consensus       153 l~n~  156 (179)
                      ...+
T Consensus       213 ~~~~  216 (221)
T 3p0l_A          213 ESHP  216 (221)
T ss_dssp             C---
T ss_pred             hhch
Confidence            7443

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=95.95  E-value=0.36  Score=36.51  Aligned_cols=135  Identities=13%  Similarity=0.095  Sum_probs=78.7

Q ss_pred             EEEEEEEEcCC---------HHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeee
Q 044703            5 TVTDEYTSPIS---------PARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDAL   75 (179)
Q Consensus         5 ~v~~ei~i~ap---------a~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~   75 (179)
                      ++++.+.||-|         .+++|+-+.....+ -....| .+.+|++++..+ ..-.|.++|+.+    .++|++. +
T Consensus         2 ~f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vlse~~-~~~~R~l~fg~~----~i~e~vt-l   73 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVV-GLERFEILVDDG-DRLHRRLYLPGL----VVEDEVV-L   73 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCT-TCCEEEEEEECS-SEEEEEEEETTE----EEEEEEE-E
T ss_pred             ceeEEEecCCCCCCCCCccCHHHHHHHHHHHhcC-hhhccc-ccCeEEEEecCC-CeEEEEEEECCC----ccceEEE-E
Confidence            35677788765         36899998733333 224666 599999986543 267899999766    6889977 5


Q ss_pred             ecCcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc-CCC-CC----CHHHHHHHHHHHHHHHHHHH
Q 044703           76 DLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK-GNI-VL----TEEEIKEGKEKSLAMYKVVE  149 (179)
Q Consensus        76 D~~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~-~~~-~~----~~~~~~~~~e~~~~~~k~ie  149 (179)
                      .+.. ++.|.+-..+-..  =++  -++.+....+|  ..-.++.|+-. ++. +.    .+....+++++.....+.|=
T Consensus        74 ~~~~-~v~f~~~~t~~~~--gs~--ltn~Iee~~~g--~L~lrF~ye~~~p~~s~e~~~~~~~~~~ay~~ad~~Tv~~iR  146 (157)
T 2ffs_A           74 KAPD-SAHYSIKPSAEVA--GGS--LDMTIEEPEPG--SLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIR  146 (157)
T ss_dssp             ETTT-EEEEEECCCSSSB--EEE--EEEEEEEEETT--EEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCc-EEEEEcccccCCC--Cce--EEEEEeeCCCC--cEEEEEEEEccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 6888886622111  122  33444333232  56666667764 332 11    11122445556667777776


Q ss_pred             HHHhc
Q 044703          150 NYLMQ  154 (179)
Q Consensus       150 ~yll~  154 (179)
                      +++..
T Consensus       147 el~~~  151 (157)
T 2ffs_A          147 DRFGA  151 (157)
T ss_dssp             HHHCC
T ss_pred             HHHHc
Confidence            65543

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=95.87  E-value=0.17  Score=40.30  Aligned_cols=140  Identities=7%  Similarity=0.046  Sum_probs=75.5

Q ss_pred             EEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcC-CCCCceEEEEEeecCcee---eeeeEE-Eeee---ecC-
Q 044703            9 EYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEG-DGGAGSIRQINVVEGNQV---KCSKNR-VDAL---DLE-   78 (179)
Q Consensus         9 ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eG-dg~~GsvR~~~~~~g~~~---~~~kEr-l~~~---D~~-   78 (179)
                      ...+ +++++.+++++. |... .++|-|. ++++++++- ++ -+.|..+.+....+.   ..+--| ....   ++. 
T Consensus        78 ~~~~~~~~~~~v~~~l~-d~~~-r~~Wd~~-~~~~~vle~i~~-~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g  153 (255)
T 2e3n_A           78 THAVKGVTGHEVCNYFW-NVDV-RNDWETT-IENFHVVETLAD-NAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTEND  153 (255)
T ss_dssp             EEEEETCCHHHHHHHHH-CGGG-HHHHCCS-EEEEEEEEEEET-TEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTS
T ss_pred             EEEEcCCCHHHHHHHHh-Ccch-Hhhhhhh-cceeEEEEEcCC-CCEEEEEEeecCCCcCCceeEEEEEEEeccccccCC
Confidence            4455 599999999997 9988 8999995 888888875 32 235666655432221   122222 1222   111 


Q ss_pred             -cc--eEEEEEEecCccc-cc-ee-----eEEEEEEeeec--------CCCCceEEEEEEEEEcCCCCCCHHHHH-HHHH
Q 044703           79 -NF--SYKYSLIEGDVLM-DK-LE-----KISYDVKFEPT--------ADGGSKNTMTSTYYTKGNIVLTEEEIK-EGKE  139 (179)
Q Consensus        79 -~~--~~~Y~iieG~~~~-~~-~~-----~y~~ti~v~p~--------~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~e  139 (179)
                       +.  .+.+++.-...+. .+ +.     ++.+..-+.|.        ++++|.+++....++.+.  .|.-.++ .++.
T Consensus       154 ~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~  231 (255)
T 2e3n_A          154 PETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGW--APASVLRAVAKR  231 (255)
T ss_dssp             CCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSSC--CCHHHHHHHHHH
T ss_pred             CCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCCc--cCHHHHHHHHhc
Confidence             11  2233332111111 11 11     11222223332        224788888888888753  3443443 3455


Q ss_pred             HHHHHHHHHHHHHhc
Q 044703          140 KSLAMYKVVENYLMQ  154 (179)
Q Consensus       140 ~~~~~~k~ie~yll~  154 (179)
                      .+..+++.|.+|+.+
T Consensus       232 ~~~~~l~~L~k~v~~  246 (255)
T 2e3n_A          232 EYPKFLKRFTSYVQE  246 (255)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHH
Confidence            677888999888874

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=95.46  E-value=0.67  Score=36.07  Aligned_cols=146  Identities=8%  Similarity=-0.077  Sum_probs=80.4

Q ss_pred             EEEEEEEcCCHHHHHHHh--hhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--Cce---eeeeeEEEeeeecC
Q 044703            6 VTDEYTSPISPARLFKAL--IVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--GNQ---VKCSKNRVDALDLE   78 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~--~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g~~---~~~~kErl~~~D~~   78 (179)
                      +..+..+++|+++|++++  . |... .++|-+. +.++++++--++...|-.....+  +.+   -..+--|-...++.
T Consensus        69 ~k~~~~v~~~~~~v~~~l~~~-d~~~-r~~Wd~~-~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~  145 (231)
T 2r55_A           69 YRGEGIVYGTLEEVWDCVKPA-VGGL-RVKWDEN-VTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYED  145 (231)
T ss_dssp             EEEEEEESSCHHHHHHHHCC---CCS-HHHHCTT-CSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTT
T ss_pred             EEEEEEECCCHHHHHHHHHhh-Ccch-hhhhccc-cceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCC
Confidence            456677899999999999  7 7887 8899985 78888876532222332211111  111   11222222222222


Q ss_pred             c-ceEEEEEEecCccc--cc---eeeEEEEEEeeecC--CCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHH
Q 044703           79 N-FSYKYSLIEGDVLM--DK---LEKISYDVKFEPTA--DGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVE  149 (179)
Q Consensus        79 ~-~~~~Y~iieG~~~~--~~---~~~y~~ti~v~p~~--~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie  149 (179)
                      + ..+...=++-+-.+  .+   ...+.+-+.+.|.+  +++|.++|....++.+..  |...+ ..+...+...++.|.
T Consensus       146 g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lr  223 (231)
T 2r55_A          146 GTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYL--PQNVVDSFFPRSMTRFYANLQ  223 (231)
T ss_dssp             SCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCc--cHHHHHHHHhHhHHHHHHHHH
Confidence            2 22222222322111  01   22334556778864  468999999988887643  34343 334456678888888


Q ss_pred             HHHhcCc
Q 044703          150 NYLMQNP  156 (179)
Q Consensus       150 ~yll~n~  156 (179)
                      .++.+.+
T Consensus       224 ~~~~~~~  230 (231)
T 2r55_A          224 KAVKQFH  230 (231)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHhc
Confidence            8887654

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=95.38  E-value=0.72  Score=35.91  Aligned_cols=143  Identities=8%  Similarity=-0.107  Sum_probs=79.4

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec--C--c-eeeeeeEEEeeeecCcc
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE--G--N-QVKCSKNRVDALDLENF   80 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~--g--~-~~~~~kErl~~~D~~~~   80 (179)
                      +..+..|++|+++||+.+. |... -++|-+. +..+++++.-+.--.|-...+..  +  . +-..+--|-..-++.+.
T Consensus        69 ~k~~~~v~~~~~~v~~~l~-d~~~-r~~Wd~~-~~~~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~  145 (224)
T 1jss_A           69 YKAQGVMDDVVNNVIDHIR-PGPW-RLDWDRL-MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGL  145 (224)
T ss_dssp             EEEEEEESSCHHHHHHHHS-SSTT-HHHHCSS-EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEeCCHHHHHHHHh-Cccc-ccccccc-eeeEEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeE
Confidence            4567788999999999996 8776 6899985 88889887421111233333322  1  1 11122222111223332


Q ss_pred             eEEEEEEecCc-ccc--ceeeEEEEEEeeecCCC--CceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHHHHHh
Q 044703           81 SYKYSLIEGDV-LMD--KLEKISYDVKFEPTADG--GSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        81 ~~~Y~iieG~~-~~~--~~~~y~~ti~v~p~~~g--~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie~yll  153 (179)
                      .+...-++-+. .+.  -...+.+.+.+.|.+++  +|.++|.+.-++.+..  |.-.++ .+......+++.+.+++.
T Consensus       146 vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lr~~~~  222 (224)
T 1jss_A          146 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMI--PQSAVDTAMASTLANFYSDLRKGLR  222 (224)
T ss_dssp             EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCC--CHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCc--cHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            22111122111 111  12345567888897654  7999999988887643  343443 334456677777776654

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=93.91  E-value=1.9  Score=34.07  Aligned_cols=143  Identities=13%  Similarity=-0.031  Sum_probs=82.6

Q ss_pred             EEEEEEEEcCCHHHHHH-HhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCce---eeeeeEEEe--eeecC
Q 044703            5 TVTDEYTSPISPARLFK-ALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVD--ALDLE   78 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~-~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~--~~D~~   78 (179)
                      .+..+..|++++++++. ++. |    .++|-|. +.++++++--+.--.|-.+.+..-.+   -..+--|-.  .+++.
T Consensus        76 ~~K~~~~v~~~~~~v~~~ll~-d----r~~Wd~~-~~~~~vle~id~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g  149 (237)
T 2pso_A           76 LWKASVEVEAPPSVVLNRVLR-E----RHLWDED-FVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKG  149 (237)
T ss_dssp             EEEEEEEESSCHHHHHHHHHH-C----GGGTCTT-BCCCEEEEEEETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGG
T ss_pred             EEEEEEEEcCChHHHHHHHHh-h----hhhHHhh-hceEEEEEEcCCCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCC
Confidence            35677889999988875 553 6    4799985 77778776421111243444432111   112222222  23444


Q ss_pred             cceEEEEEEecC-cccc---ceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           79 NFSYKYSLIEGD-VLMD---KLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        79 ~~~~~Y~iieG~-~~~~---~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      ...+..+-++.+ .++.   -...+.+.+.+.|.++++|.++|....++.+..|.-  +...+...+...++.|-.++.+
T Consensus       150 ~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G~iP~~--ln~~~~~~~~~~l~~LR~~~~~  227 (237)
T 2pso_A          150 MCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHSPEW--YSKGFGHLCAAEVARIRNSFQP  227 (237)
T ss_dssp             CEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSCTTT--TTTHHHHHHHHHHHHHHHTTSC
T ss_pred             EEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444432 1111   134567788899998889999999999998644321  2233445666777777777665


Q ss_pred             C
Q 044703          155 N  155 (179)
Q Consensus       155 n  155 (179)
                      .
T Consensus       228 ~  228 (237)
T 2pso_A          228 L  228 (237)
T ss_dssp             C
T ss_pred             h
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	2e-61
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	1e-59
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	1e-59
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	4e-59
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	6e-56
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	7e-54
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	7e-17

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score =  185 bits (471), Expect = 2e-61
 Identities = 71/158 (44%), Positives = 100/158 (63%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF    E TS I  AR+FKA I+D   L+PK+ PQA+ S+E  EG+GG G+I++IN  E
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G   K  K+RVD +D  NF Y YS+IEG  + D LEKIS ++K   T DGG    +++ Y
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKGN  +  E++K  KE    + + VE+YL+ + + Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  181 bits (460), Expect = 1e-59
 Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVFT  DE TS I+PARL+KAL+ D+  +IPK   +A++SIE  EG+GG G+I+++ ++E
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKDADAIIPK-AVEAIQSIETVEGNGGPGTIKKLTLIE 59

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G + K   ++++A+D  N  Y YS++ G  L D +EKIS++ K    A+GGS   +T   
Sbjct: 60  GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
            TKG+    EEE K  K +  A +K +ENYL  +PE
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score =  181 bits (460), Expect = 1e-59
 Identities = 81/158 (51%), Positives = 112/158 (70%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVFT   E+TS I P RLFKA ++D+ NL+PK+ PQA+K  EI EGDGG G+I++I   E
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G+Q    K+++D++D EN+SY Y+LIEGD L D LEKISY+ K   +  GGS    TS Y
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEY 159
           +TKGN+ + EE +K GKEK+  ++K++E YL  +P+ Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score =  179 bits (456), Expect = 4e-59
 Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GV T   E TS +S  ++F+  ++D   ++PK  P A KS+EI +GDGG G+++ I + +
Sbjct: 1   GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPD 59

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G  +     R+D ++ E  ++ YS+I+GD+L+  +E I   V   PTADGGS    T+ +
Sbjct: 60  GGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIF 119

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN 155
           +TKG+ V+ EE IK   E++ A++K +E YL+ N
Sbjct: 120 HTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 153

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  171 bits (435), Expect = 6e-56
 Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           G+F   +E +S ++PA+L+KAL  DS  ++PK++   ++S+EI EG+GG G+I++I  + 
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIH 59

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
                   +++DA+D  N +Y YS+I G+ L + LEKISY+ K  P  DGGS   +   +
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE 157
           +TKG+ VL+E    + K K L ++K +E Y++ +P+
Sbjct: 120 HTKGD-VLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score =  165 bits (420), Expect = 7e-54
 Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 2   GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE 61
           GVF   DE +S ++PA+L+KAL  DS  +  + +   ++SIE+ EG+GG G+I++I   E
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTI-AQKIDGPIQSIELVEGNGGVGTIKKITANE 59

Query: 62  GNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTY 121
           G++      +VDA+D  N  Y YS++ G  L + LEK+S++ K    + GGS + +T  +
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119

Query: 122 YTKGNIVLTEEEIKEGKEKSLAMYKVVE 149
           +TKG+  L++    +   K    +K +E
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIE 147

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.6 bits (173), Expect = 7e-17
 Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 57  INVVEGNQVKCSKNRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADG-GSKN 115
           +        K  K  ++A+DL   +    +   ++     + +   +   P   G GS  
Sbjct: 25  VEDTNRPFEKNGKTEIEAVDLVKKTMTIQMSGSEI-QKYFKTLKGSIAVTPIGVGDGSHV 83

Query: 116 TMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ 154
             T  +      +     I    ++S+  +K ++  ++ 
Sbjct: 84  VWTFHFEKVHKDIDDPHSI---IDESVKYFKKLDEAILN 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.95
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.94
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.69
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.65
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.63
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.43
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.21
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.13
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.06
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.95
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.77
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.67
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.46
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.4
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.11
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.08
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.04
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.98
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.69
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.59
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	97.39
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	96.8
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	96.33
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	96.32
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	82.92

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=3.2e-48  Score=299.04  Aligned_cols=159  Identities=45%  Similarity=0.735  Sum_probs=150.9

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+.+++.|+++++||+|+|+++.+|++.|+|+|+|+++++|++++|||++||||.|+|..|++..++||||+++|+++|+
T Consensus         1 Gv~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   80 (159)
T d1fm4a_           1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTE
T ss_pred             CceEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceEEEEEEEEEcccccE
Confidence            68899999999999999999976699998899999999999999999999999999999998888999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA  160 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~  160 (179)
                      ++|+++|||.+..+|++|+++++|+|.++|+|+++|+++|+++++..++++.++.+++.+.+|+|+||+||++|||+||
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~~~~~~K~iE~YLlanp~~y~  159 (159)
T d1fm4a_          81 YNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN  159 (159)
T ss_dssp             EEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred             EEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhcC
Confidence            9999999998777899999999999999999999999999999988777777778899999999999999999999997

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=1.1e-47  Score=295.96  Aligned_cols=159  Identities=51%  Similarity=0.874  Sum_probs=151.3

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+.+++.|+++++||+|+|+++.+|+++|+|+++|+.+++|++++|||++||||.|+|..|++..++||||+++|+++|+
T Consensus         1 gv~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~   80 (159)
T d1e09a_           1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEEEEEEEEcccccE
Confidence            68899999999999999999975699998899999999999999999999999999999999889999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA  160 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~  160 (179)
                      ++|+++|||++...|++|+.++++.|.+++||+++|+++|+++++..++++..+..++++.+|+|+||+||++|||+||
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLlanp~~y~  159 (159)
T d1e09a_          81 YSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN  159 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred             EEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhcC
Confidence            9999999998876799999999999999999999999999999998888887778889999999999999999999997

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=4.2e-47  Score=291.97  Aligned_cols=157  Identities=44%  Similarity=0.726  Sum_probs=148.9

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+.+++.|+++++||+|+|+++.+|++.|+|++ |+.|++|+++||||++||||.|+|..|++..++|||++++|++|++
T Consensus         1 gv~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~   79 (157)
T d1xdfa1           1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLR   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCCCCCCcEEEEEEcCCCccEEEEEEEEEEechhcE
Confidence            688999999999999999998867999977897 5689999999999999999999999999989999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEEYA  160 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~~~  160 (179)
                      ++|+++|||++...|++|+.+++++|.++|||+++|+++|+++++..++++.++.+++.+.+|+|++|+||++||| ||
T Consensus        80 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~~~~~~K~iEaYLlanpd-y~  157 (157)
T d1xdfa1          80 YNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE-YN  157 (157)
T ss_dssp             EEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHHHHHHHHHHTTTHHHHHHHHTSGG-GC
T ss_pred             EEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC
Confidence            9999999998877799999999999999999999999999999998888888888899999999999999999998 87

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=7.4e-45  Score=278.46  Aligned_cols=153  Identities=39%  Similarity=0.690  Sum_probs=145.2

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+.+++.|+++++||+|+|+++..|+++|+|+++|++|++|++ +|||++||||.|+|..|++...+|||++++|++|++
T Consensus         1 gv~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   79 (153)
T d2bk0a1           1 GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALT   79 (153)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECCCCCCeEEEEEEecCccceeeEEEEEEEecCccE
Confidence            6889999999999999999998669999889999999999995 899999999999999998889999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n  155 (179)
                      ++|+++|||++...|++|+.+++++|.++|+|+++|+++|++.++..++|+.++.+++.+.+|+|+||+||++|
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999987667999999999999999999999999999999988888888888999999999999999998

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=1.9e-44  Score=276.59  Aligned_cols=155  Identities=37%  Similarity=0.728  Sum_probs=145.0

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+.+++.|+++++||+|+|+++.+|+++|+|+++|. |+++++++|||++||||.|+|..|++..++|||++++|++||+
T Consensus         1 Gv~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~-i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~   79 (155)
T d1icxa_           1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTT-EEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEeEEecCCHHHHhhhheeccchhchhhhhh-eeeeeEecCCCccceEEEEEeccCCceEEEEEEEEEEcccccE
Confidence            688999999999999999999877999988999985 9999999999999999999999999989999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPEE  158 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d~  158 (179)
                      ++|+++|||++...|++|+.++++.|.++|||+++|+++|++.++. .+++..+.+++.+.+|||+||+||++|||.
T Consensus        80 ~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~~-~~e~~~~~~ke~~~~~fK~iE~YLlanPd~  155 (155)
T d1icxa_          80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCC-CChhhHHHHHHHHHHHHHHHHHHHhhCcCC
Confidence            9999999998877799999999999999999999999999999875 455566678899999999999999999984

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=3.2e-41  Score=256.64  Aligned_cols=147  Identities=36%  Similarity=0.641  Sum_probs=139.3

Q ss_pred             ccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcce
Q 044703            2 GVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         2 ~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~   81 (179)
                      |+.+++.|+++++||+|+|+++..|+++ +|+|+|+.|++|++++|||++||||.|+|.+|++..++||||+++|+++|+
T Consensus         1 gv~~~~~E~~~~v~a~k~~ka~~~d~~~-l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~   79 (147)
T d1txca1           1 GVFVFRDETSSSVAPAKLYKALTKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (147)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHTTHHH-HHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHhhhccccc-CccccccccccceeecCCCCcceEEEEEEcCCCcceEEEEEEEEEccCCcE
Confidence            6889999999999999999877679999 788899999999999999999999999999999888999999999999999


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVE  149 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie  149 (179)
                      ++|+++|||++..+|++|.+++++.|.++|+|+++|+++|++.++.+++++.++.+++.+.+|||++|
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            99999999987778999999999999999999999999999999888888888889999999999997

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=6.7e-27  Score=171.29  Aligned_cols=115  Identities=14%  Similarity=0.255  Sum_probs=98.9

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      +|+++.+++|++||+++|++++ +.+. .| |              +                ...|||++++|++|+++
T Consensus         4 ~gkl~~eveik~~a~kf~~~~~-~~~~-~~-~--------------~----------------~~~KerVe~vD~en~si   50 (120)
T d1vjha_           4 KGALSVKFDVKCPADKFFSAFV-EDTN-RP-F--------------E----------------KNGKTEIEAVDLVKKTM   50 (120)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-HHTT-SC-S--------------S----------------TTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEEEecCCHHHHHHHhh-hccC-CC-C--------------C----------------cccEEEEEEEcCCCCEE
Confidence            4899999999999999999997 6544 11 1              1                13489999999999999


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCC-CceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADG-GSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g-~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      +|+++|||++. .|++|+++++|+|.++| ||+++|+++|++.+++.|+|+   ..++++.+|+|+||+|||+
T Consensus        51 ty~vieGdvl~-~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~---~~~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          51 TIQMSGSEIQK-YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPH---SIIDESVKYFKKLDEAILN  119 (120)
T ss_dssp             EEEEECTTGGG-TEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSH---HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecccc-ceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHH---HHHHHHHHHHHHHHHHHhc
Confidence            99999999875 69999999999999887 899999999999987666565   3457999999999999986

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.94  E-value=1.2e-25  Score=166.64  Aligned_cols=135  Identities=16%  Similarity=0.240  Sum_probs=111.5

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+.+.+++|+|||++||++++ ||++ +|+|+|. +.+|+..++    |++|.+++.+|+   .+.|||+.+|+.+|+++
T Consensus         2 ~~~~~si~I~A~pe~VW~~v~-df~~-~~~W~p~-v~~~~~~~~----G~~R~~~~~~g~---~~~E~l~~~d~~~~~~~   71 (138)
T d3cnwa1           2 AHTTTSMEIFGSPEQVWQLIG-GFNS-LPDWLPY-IPSSKLTEG----GRVRHLANPDGD---TIIERLEVFNDKERYYT   71 (138)
T ss_dssp             EEEEEEEEESSCHHHHHHHHC-CTTC-GGGTCTT-CSEEEEEGG----GTEEEEECTTCC---EEEEEEEEEETTTTEEE
T ss_pred             CcEEEEEEEeCCHHHHHHHHh-Cccc-hHHHhcc-cceeEeecC----ceeEEEEecCCc---eeEEEEEEEeCCCcEEE
Confidence            457889999999999999997 9999 8999995 889986533    899999998775   78999999999999999


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCC-CceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADG-GSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g-~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll  153 (179)
                      |++++|++   ++++|.++++|.|.++| +|.|+|+++|+|.+.  .++...+.....+.+.+++|+++++
T Consensus        72 y~~~~~~~---p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~~--~~~~~~~~~~~~~~~~l~~L~~~f~  137 (138)
T d3cnwa1          72 YSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEV--SDEEAINLFHGIYSDGLKALQQAFL  137 (138)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEESSS--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCC---cceeeEEEEEEEECCCCCeEEEEEEEEEecCCC--CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999875   48999999999998775 699999999998643  2233333344456677788877654

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=2.4e-15  Score=109.77  Aligned_cols=139  Identities=21%  Similarity=0.260  Sum_probs=103.9

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      .++.++.|+||+++||+++. |+.+ +|+|+|. +++++++++++ .+....+++...+....+..++. .++.++.+.|
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~-D~~~-~~~w~p~-~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~   76 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAK-DLEG-LKPYLKE-VESLEVVAREG-ARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNRF   76 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHH-CHHH-HGGGCTT-EEEEEEEEEET-TEEEEEEEEEETTEEEEEEEEEE-EETTTTEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHH-Chhh-HHhhccc-cEEEEEEEecC-CcceEEEEEEeeeeeEEEEEEEE-EcCCCCEEEE
Confidence            47899999999999999997 9999 9999996 89999886653 23444455554443334556644 6889999999


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC--CCCCHHHH-HHHHHHHHHHHHHHHHHHhc
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN--IVLTEEEI-KEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~--~~~~~~~~-~~~~e~~~~~~k~ie~yll~  154 (179)
                      ++..|+     +..+.++++++|.++ ||.++|+++|+....  .......+ +.+++.+..+++++++.+.+
T Consensus        77 ~~~~g~-----~~~~~g~w~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  143 (146)
T d2d4ra1          77 FSPEGD-----FDRYEGTWVFLPEGE-GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  143 (146)
T ss_dssp             EEEEES-----CSEEEEEEEEEECSS-SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEccCC-----cceEEEEEEEEecCC-ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999886     567899999999865 699999999997532  22223232 44556677888888877665

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.65  E-value=1e-14  Score=106.98  Aligned_cols=143  Identities=10%  Similarity=0.101  Sum_probs=102.4

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCC-CCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDG-GAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg-~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ++++.+++|+|||++||+++. |+.+ +|+|+|+ +.++++++.++ +.|....+....++.......+ ...++..+.+
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   78 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDVTN-DIEA-WPELFSE-YAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSH-RVPDKGSRTV   78 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHT-CGGG-HHHHCSS-EEEEEEEECCSSCEEEEEEECCCTTSCCCEEEEE-EEEEGGGTEE
T ss_pred             CEEEEEEEECCCHHHHHHHHH-Chhh-Hhhhhhh-ceEEEEeecCCCceEEEEEEEEeeeeeeEEEEEE-EEEcCCccEE
Confidence            567999999999999999997 9999 9999996 88888876543 3333333333333332233333 4477888888


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll~n  155 (179)
                      .+....++    +...+.++++++|.++ ||.|+|+.+|+..+..+.+...+ +.+...+...++.|.+++.+.
T Consensus        79 ~~~~~~~~----~~~~~~~~w~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~  147 (155)
T d2rera1          79 RAHRVETG----PFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDR  147 (155)
T ss_dssp             EEEESSCT----TEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCc----cceeeEEEEEEeecCC-ccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            88875544    3788999999999865 79999999999887665554433 444455666677777666543

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.63  E-value=1.6e-14  Score=104.16  Aligned_cols=133  Identities=8%  Similarity=0.008  Sum_probs=95.4

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      +++.++.|+||+|+||+++. |+.+ +|.|+|. +++++. +++.++|+...+++..+.   .+..++.++++ ++++++
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~~-d~~~-~~~W~~~-~~~~~~-~~~~~~G~~~~~~~~~~~---~~~~~v~~~~p-~~~~~~   73 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYYS-QVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDMP---ELAFTLVEVRE-NQCFSD   73 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHHH-CGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTSC---CEEEEECCCBT-TTEEEE
T ss_pred             ceEEEEEEcCCHHHHHHHHh-hhhh-CccccCc-ccceee-cccccceEEEEEEEcCCc---ceeeeeecccC-CcEEEE
Confidence            57899999999999999997 9999 9999995 888885 455578999888887664   46678887765 457888


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      +...+      ...+...+.+.+.++|+|.++|+.+|...... +....+ +...+.+...++.|.+.+
T Consensus        74 ~~~~~------~~~~~~~~~~~~~~~g~t~vt~~~~~~g~~~~-~~~~~~~~~v~~~~~~~l~~LK~~~  135 (137)
T d2b79a1          74 LTATP------FGNVLFEHEILENPDGTISLRHSVSLTDSDTT-EEALAFLKQIFADVPESVGKLKQIL  135 (137)
T ss_dssp             EEEET------TEEEEEEEEEEECTTSCEEEEEEEEECSCSCC-TTHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             Eeccc------ceeeeeEEEEccCCCCcEEEEEEEecccccch-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            76332      44567788899998889999999999743222 222222 223334555555555444

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.43  E-value=1.1e-11  Score=88.57  Aligned_cols=140  Identities=12%  Similarity=0.115  Sum_probs=85.8

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+++.+++|+|||++||+++. |+.+ +|.|+|+ +++++...+.  .+.......................++... ..
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~-D~~~-~~~w~p~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   76 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLT-DPKR-FSRAFPG-FKSVEVEDGS--FTIELRLSLGPLRGDARVRASFEDLEKPSK-AT   76 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHT-CHHH-HGGGSTT-EEEEEEETTE--EEEEEEEESSSSEEEEEEEEEEEEEETTTE-EE
T ss_pred             EEEEEEEEEcCCHHHHHHHHh-CHhh-hhhcccc-hhheeecccc--cceeEEEEEEEEeeEeeeeeeeeeecCCcc-ee
Confidence            589999999999999999997 9999 9999996 8888754332  222222222221111223334343444443 33


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      +........  ...++..++.+.|.++ ||.++|+.+++..+- .......+ ..++..+..+++.|.+.|
T Consensus        77 ~~~~~~~~~--~~~~~~~~~~l~~~~~-gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~  144 (147)
T d2ns9a1          77 VKGSGRGAG--STLDFTLRFAVEPSGG-GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKREL  144 (147)
T ss_dssp             EEEEEECSS--EEEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccc--cceeeEEEEEEEecCC-CcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333322  3677889999999855 699999999998653 32333333 223334455555555544

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.21  E-value=5.2e-10  Score=80.64  Aligned_cols=141  Identities=12%  Similarity=0.085  Sum_probs=86.6

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      ....+++|++|+++||+++. |... +|+++|+ +++++.++++...+.++ +.++.-...-..+.++...+...+. ..
T Consensus         2 n~s~~~~i~~~~e~v~~~l~-D~~~-~~~~~Pg-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~   76 (147)
T d2pcsa1           2 NGNGSIELKGTVEEVWSKLM-DPSI-LSKCIMG-CKSLELIGEDKYKADLQ-IGIAAVKGKYDAIIEVTDIKPPYHY-KL   76 (147)
T ss_dssp             EEEEEEEEESCHHHHHHHHT-CHHH-HHHHSTT-EEEEEEEETTEEEEEEE-ECCGGGCEEEEEEEEEEEEETTTEE-EE
T ss_pred             CCCceEEeCCCHHHHHHHHc-CHHH-HHhhCcc-hhhceecCCCEEEEEEE-EeecceeeeeEEEEEEeccCcccce-eE
Confidence            45788999999999999997 9999 9999997 78888775542112222 2222211112344555656665543 33


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCC-CCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGN-IVLTEEEI-KEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~-~~~~~~~~-~~~~e~~~~~~k~ie~yl  152 (179)
                      ........  +.....+.+.+.+.++++|.|+|+++|+..+. .......+ ..+.+.+..+.+.+++.|
T Consensus        77 ~~~~~~~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l  144 (147)
T d2pcsa1          77 LVNGEGGP--GFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEI  144 (147)
T ss_dssp             EEEEEETT--EEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccc--chhcceeEEeeecccCCcEEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32222221  36667778888888888999999999998543 22233333 223334455555555554

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.13  E-value=8.5e-10  Score=80.09  Aligned_cols=101  Identities=12%  Similarity=0.034  Sum_probs=70.1

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      .+.+.+++|++|+++||+.+. |+.+ +|+|+|+ +.+++..+|+      +.+....+.  ..++-++.. |.+++.+.
T Consensus         5 ~~~~~~i~I~~p~~~v~~~~~-d~~~-~p~w~~~-l~~~~~~~~~------~~~~~~~~~--G~~~~~i~~-~~p~~~i~   72 (133)
T d2qpva1           5 QSRIIHLSVEKPWAEVYDFAA-NPGN-MPRWAAG-LAGGLEADGE------DWIAKGGPL--GEVRVNFAP-HNEFGVID   72 (133)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH-CGGG-GGGTCGG-GTTCCEEETT------EEEEECSSS--CEEEEEECC-CCSSCBCC
T ss_pred             eEEEEEEEECCCHHHHHHHHh-Chhh-cchhhhc-cceeEEecCC------cEEEEecCC--CcEEEEEEE-cCCCCEEE
Confidence            466778999999999999997 9999 9999996 7777655442      334443222  245566664 78899999


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEE
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT  123 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~  123 (179)
                      |+...|+..     .-..++++.|.++ +|.+.|+. |++
T Consensus        73 w~~~~~~~~-----~g~v~fr~~~~g~-gt~v~~~~-~~p  105 (133)
T d2qpva1          73 HVVTLPDGL-----KVYNALRVTPNGS-GTEVSFTL-LRL  105 (133)
T ss_dssp             EEEECTTSC-----EEEEEEEEEEETT-EEEEEEEE-ECC
T ss_pred             EEEecCCCC-----EEEEEEEEccCCC-eEEEEEEE-EeC
Confidence            999877531     2234667776644 57777665 443

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.06  E-value=1.3e-09  Score=79.70  Aligned_cols=110  Identities=20%  Similarity=0.286  Sum_probs=78.5

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCC-CCCceEEEEEeec--CceeeeeeEEEeeeecCcce
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGD-GGAGSIRQINVVE--GNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGd-g~~GsvR~~~~~~--g~~~~~~kErl~~~D~~~~~   81 (179)
                      ....+..|++||+++|+++. |+.+ +|+|+|. .+++++++.. .+-|......+..  ++.......+ ...+..++.
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~-Dve~-Yp~FlP~-c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   78 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVG-DVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATR-VRRDKDARS   78 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHT-TTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEE-EEEETTTCE
T ss_pred             cceEEEEeCCCHHHHHHHHH-HHHh-hhhhccc-cCccEEEecccccccceeeEEEEEEeeeeEEEEEEE-eeecCCceE
Confidence            45667799999999999997 9999 9999996 7777776542 2233333444433  3322333334 336677777


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTK  124 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~  124 (179)
                      +.....+|.     ++...+.+++.|.++ +|.|+|.++|+..
T Consensus        79 ~~~~~~~g~-----f~~l~~~W~f~~~~~-~T~V~~~l~fe~~  115 (148)
T d1t17a_          79 IDVSLLYGP-----FKRLNNGWRFMPEGD-ATRVEFVIEFAFK  115 (148)
T ss_dssp             EEEEESSTT-----SSCEEEEEEEEEETT-EEEEEEEEEECCS
T ss_pred             EEEeccCch-----hhhcccceeeccCCC-ceEEEEEEEEEEC
Confidence            777666553     677899999999876 6999999999855

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.95  E-value=1.4e-08  Score=75.02  Aligned_cols=145  Identities=12%  Similarity=0.003  Sum_probs=91.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec-CceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ..+..+.+|+||+++||+++. |... +++|++..--++...+.|..+|....+.+.. +|....+.-++.++++.+ ++
T Consensus        12 ~~i~i~r~i~Ap~e~Vw~a~t-dpe~-l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~-rl   88 (163)
T d1xuva_          12 QEIIITREFDAPRELVFKAFT-DPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPE-RI   88 (163)
T ss_dssp             SEEEEEEEESSCHHHHHHHHH-CHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-EE
T ss_pred             ceEEEEEEeCCCHHHHHHHHc-ChHH-hhhccCCCCccceeeeeeceeCceEEEEEEecCCCceEEEEEEEEecCCC-EE
Confidence            357778899999999999997 9998 8888753223444456665566555555442 333345777888898876 57


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~ie~yll~n  155 (179)
                      .|+.--++... .-.....++++++.++|+|.+++...|.....   .+..+ ....+.-..++..|++||.+.
T Consensus        89 ~~tw~~~~~~~-~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~~~---~~~~~~~g~~~GW~~~L~~L~~~le~~  158 (163)
T d1xuva_          89 ISTFEFEGLPE-KGHVILDTARFEALPGDRTKLTSHSVFQTIED---RDGMLQSGMEEGINDSYERLDELLEKM  158 (163)
T ss_dssp             EEEEEETTSSS-SCCCEEEEEEEEEETTTEEEEEEEEECSSHHH---HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCC-CCCcEEEEEEEEEeCCCcEEEEEEEcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77653222211 13345788999999887788887766532110   01111 112345667888888888753

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.77  E-value=9.1e-07  Score=64.96  Aligned_cols=146  Identities=13%  Similarity=0.101  Sum_probs=90.9

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeec-CceeeeeeEEEeeeecCcceE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ..++.+..|+||+++||+++. |... +++|.+..--.+...+.|-.+|..-++.+.. ++....+.-++.++++.. ++
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a~t-dpe~-l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~-~i   83 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEAWT-KKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDE-YV   83 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHHTT-CHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTT-EE
T ss_pred             EEEEEEEEECCCHHHHHHHHc-CHHH-HhCcccCCCccceEEEeecccCceEEEEEecCCcceEEEEEEEEEEcCCC-EE
Confidence            457778899999999999997 9998 7887653222233345665666555555443 232234566788887665 56


Q ss_pred             EEEEE-ecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCC-CHH-------HHHHHHHHHHHHHHHHHHHHh
Q 044703           83 KYSLI-EGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVL-TEE-------EIKEGKEKSLAMYKVVENYLM  153 (179)
Q Consensus        83 ~Y~ii-eG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~-~~~-------~~~~~~e~~~~~~k~ie~yll  153 (179)
                      .|+.- ++..    -.....++.+.+..+|+|.++++.+..+...... ...       ......+....++..|.+||-
T Consensus        84 ~~t~~~~~~~----~~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE  159 (164)
T d2il5a1          84 KMTIGMPGLS----ETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIE  159 (164)
T ss_dssp             EEEESCC--C----CCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCC----CCceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66642 2221    1123456667677778999999999887654222 111       122334566778888888886


Q ss_pred             cCc
Q 044703          154 QNP  156 (179)
Q Consensus       154 ~n~  156 (179)
                      .-.
T Consensus       160 ~g~  162 (164)
T d2il5a1         160 TST  162 (164)
T ss_dssp             TTS
T ss_pred             ccC
Confidence            543

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.67  E-value=1.5e-06  Score=62.22  Aligned_cols=139  Identities=13%  Similarity=0.138  Sum_probs=86.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee--cCceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV--EGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~~   81 (179)
                      .+++.+..|+||+++||+++. |... +.+|++..--.+...++|-.+|..-.+.+.  ++|....+.=++.++++..+ 
T Consensus         2 ~ti~~~r~i~ap~e~Vw~a~T-dp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p~~~-   78 (143)
T d1z94a1           2 NTIRLHRVLSAPPERVYRAFL-DPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGER-   78 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHHTT-CHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTE-
T ss_pred             cEEEEEEEECCCHHHHHHHhc-CHHH-HhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcEEEEEEEEEEecCCeE-
Confidence            367788899999999999997 9988 778865322334445566566655555443  33433345667788877764 


Q ss_pred             EEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 044703           82 YKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQ  154 (179)
Q Consensus        82 ~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~  154 (179)
                      +.|+-...+...  -.....++++.+.++ +|.++.+.  +..++... .   ....+.-..++..|++||-+
T Consensus        79 i~~t~~~~~~~~--~~~~~v~~~l~~~~~-gT~lt~~~--~~~~~~~~-~---~~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          79 IRYTDRFDDAGL--PGDMITTITLAPLSC-GADLSIVQ--EGIPDAIP-P---ENCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEEEEEESCCC-----CEEEEEEEEEETT-EEEEEEEE--ECCCTTSC-H---HHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEeccCCCC--CCcEEEEEEEEEcCC-CEEEEEEE--EcCCChhH-H---HHHHHHHHHHHHHHHHHHcC
Confidence            667754333211  133567899999876 57666543  32222211 1   13345667788888888865

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.46  E-value=5.6e-06  Score=58.94  Aligned_cols=136  Identities=13%  Similarity=0.032  Sum_probs=78.9

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEc--CCCCCceEEEEEeec-CceeeeeeEEEeeeecCcce
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFE--GDGGAGSIRQINVVE-GNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~e--Gdg~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~   81 (179)
                      .+..+..|+||+++||+++. |... +.+|++.---.+...+  .+-.+|.-..+.+.. .+....+.-++.++++.+ +
T Consensus         2 el~i~r~i~a~~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~-r   78 (143)
T d3elia1           2 DLRLEREFAVAPEALFAWVS-DGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQ-S   78 (143)
T ss_dssp             EEEEEEEESSCHHHHHHHTT-CHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTT-E
T ss_pred             eEEEEEEECCCHHHHHHHhc-CHHH-HhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcEEEEEEEEEEcCCCC-E
Confidence            45677899999999999996 9998 7777642111111111  222344333333332 232234566788888776 4


Q ss_pred             EEEE--EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044703           82 YKYS--LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYL  152 (179)
Q Consensus        82 ~~Y~--iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yl  152 (179)
                      +.|+  ..+.+...  -..-..+++++|.++ +|.++++-+  .   . ++.+......+.-..++..|++||
T Consensus        79 l~~t~~~~~~~~~~--~~~~~vt~~l~~~~~-gT~l~~~~~--~---~-~~~~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          79 VGFTWGWHDDDDRR--GAESHVMFIVEPCAK-GARLILDHR--E---L-GDDEMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEEEEEEECTTSCE--EEEEEEEEECCBC---CEEEEEEEE--S---C-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCCC--CCcEEEEEEEEEcCC-CEEEEEEEE--c---C-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            5554  44333221  233456788888765 687766532  1   1 233444455667788888888887

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.40  E-value=2.3e-06  Score=62.78  Aligned_cols=144  Identities=13%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCccccccc-CcceeEEEEEcCCCCCceEEEEEee-cCceeeeeeEEEeeeecCcce
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLM-PQAVKSIEIFEGDGGAGSIRQINVV-EGNQVKCSKNRVDALDLENFS   81 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~-P~~v~sve~~eGdg~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (179)
                      ..+..+.+|+||+++||+++. |... +.+|+ |.-. .+...++|-.+|..-.+.+. +++......-++.++++.. +
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~t-dpe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~-r   80 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLT-EPEL-LKKWFVPKPW-SISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEK-R   80 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-CHHH-HTTTSSCTTC-EEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTT-E
T ss_pred             cEEEEEEEEcCCHHHHHHHHc-CHHH-HhhcCCCCCc-cceeecccceeCceEEEEEECCCCceeeEEEEEEEecCCc-E
Confidence            356778899999999999996 9888 77875 4323 33334566555555555443 2333334566778887765 5


Q ss_pred             EEEEE--Eec----------CccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHH-HHHHHHHHHHHHHH
Q 044703           82 YKYSL--IEG----------DVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEI-KEGKEKSLAMYKVV  148 (179)
Q Consensus        82 ~~Y~i--ieG----------~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~-~~~~e~~~~~~k~i  148 (179)
                      +.|+-  .++          +... .-.....++++++.++ +|.++++..+....+   .+... ....+.-..++..|
T Consensus        81 l~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~~~---~~~~~~~g~~~GW~~~l~~L  155 (165)
T d1xfsa_          81 LIWTSALVKNYRPAVPATTSDKEC-AHIVMTAVIELQPTSS-GTRYTACAMHNTPGQ---RKLHEEMGFHEGWGTTITQL  155 (165)
T ss_dssp             EEEESSEEGGGEECCC------------CCEEEEEEEECSS-SEEEEEEEECSSHHH---HHHHHTTTHHHHHHHHHHHH
T ss_pred             EEEEEeecccccccccccccccCC-CCccEEEEEEEEEcCC-cEEEEEEEEcCCHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            66652  111          1100 1223457888888754 688888765432111   01111 11344667888999


Q ss_pred             HHHHhcCc
Q 044703          149 ENYLMQNP  156 (179)
Q Consensus       149 e~yll~n~  156 (179)
                      ++||.+++
T Consensus       156 ~~~le~~~  163 (165)
T d1xfsa_         156 EELLKQEK  163 (165)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhcC
Confidence            99998765

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.11  E-value=3e-05  Score=54.85  Aligned_cols=93  Identities=11%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEEE
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYKY   84 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~Y   84 (179)
                      .++.++.|+||+++||+++. |... +.+|++..       +.+.++|..-.+....+    .+.=++.++++.. ++.|
T Consensus         6 ~i~~~~~i~ap~e~Vw~alt-~p~~-~~~W~~~~-------~~~~~~g~~~~~~~~~~----~~~g~v~~~~~~~-~l~~   71 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAVS-TSEG-LAFWFMEN-------DLKAETGHHFHLQSPFG----PSPCQVTDVERPI-KLSF   71 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHTT-SHHH-HHTTSCCB-------CCCSCTTCEEEEECSSC----EEEEEEEEEETTT-EEEE
T ss_pred             eEEEEEEECCCHHHHHHHHc-CHHH-hceEccCC-------cccccceeeEEecCCcc----ceeEEEEEEeCCc-EEEE
Confidence            47889999999999999997 9998 88999752       12223444333332222    3444677787665 7888


Q ss_pred             EEEecCccccceeeEEEEEEeeecCCCCceEEEEEE
Q 044703           85 SLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST  120 (179)
Q Consensus        85 ~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~  120 (179)
                      +.-.+        +...+++++|.+ ++|.++++-+
T Consensus        72 ~~~~~--------~~~v~~~l~~~~-~gT~lt~~~~   98 (138)
T d1xn5a_          72 TWDTD--------GWSVTFHLKEEE-NGTIFTIVHS   98 (138)
T ss_dssp             EETTT--------TEEEEEEEEECS-SSEEEEEEEE
T ss_pred             EecCC--------CeEEEEEEEEcC-CcEEEEEEEe
Confidence            86222        235688899975 4788887654

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.08  E-value=2.8e-05  Score=57.46  Aligned_cols=127  Identities=8%  Similarity=0.074  Sum_probs=79.0

Q ss_pred             cEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceE
Q 044703            3 VFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSY   82 (179)
Q Consensus         3 ~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (179)
                      ...+..+..|++|+++||+++. |... +++|+|. ...     ++-.+|.--.+.+.++    ...-++.+++ .++++
T Consensus        11 ~~~f~~er~i~ap~e~Vw~AlT-dpe~-l~~W~~~-~~~-----~d~~~GG~~~~~~~~~----~~~~~v~~~e-pp~rL   77 (160)
T d2nn5a1          11 TIYFGTERAISASPQTIWRYLT-ETDK-LKQWFPE-LEI-----GELGVNGFWRFILPDF----EETMPFTDYA-EEKYL   77 (160)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-CHHH-HHHHCTT-EEE-----EECSTTCEEEEEETTE----EEEEEEEEEE-TTTEE
T ss_pred             cEEEEEEEEecCCHHHHHHHHc-CHHH-HHhhCCC-CCc-----ccccCCCeeEEEcCCC----CcceEEEEEe-cCCEE
Confidence            3567788899999999999996 9998 8999985 221     2323343334555433    2344677787 55578


Q ss_pred             EEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 044703           83 KYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVENYLMQNPE  157 (179)
Q Consensus        83 ~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie~yll~n~d  157 (179)
                      .|+-  |.        =..+++++|.++|+|.+..+-....  +....-..   ....=..++..|.+||-..+-
T Consensus        78 ~~tW--~~--------~~v~~eL~~~~~~~t~l~l~~~~~~--~~~~~~~~---~~~GW~~~Ld~L~~~leg~~~  137 (160)
T d2nn5a1          78 GVTW--DT--------GIIYFDLKEQAPHQTLLVFSESLPE--NFTTPRHK---DIAGWSIVLNRLKQVVETPDA  137 (160)
T ss_dssp             EEEE--TT--------EEEEEEEEEEETTEEEEEEEEEECT--TCSSCHHH---HHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEe--cC--------ceEEEEEecCCCCeEEEEEEEecCc--cccchhhh---hHHHHHHHHHHHHHHHcCCCC
Confidence            8875  21        1357888888777788776654321  11111111   112446677778888866553

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.04  E-value=1.4e-06  Score=63.40  Aligned_cols=138  Identities=11%  Similarity=0.108  Sum_probs=74.7

Q ss_pred             EEEEEEEcCCHHHHHHHhhhccCcccccccCcc-----eeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            6 VTDEYTSPISPARLFKALIVDSHNLIPKLMPQA-----VKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         6 v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~-----v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      +..++.|+||+++||+++. |  . +++|.|..     +.++....+.|  |..+ +...+|..  .+.=++.++++.. 
T Consensus         6 v~~~~~i~Ap~e~Vf~a~t-e--~-~~~Ww~~~~~~~~~~~~~~~~~~g--G~~~-~~~~dG~~--~~~g~v~ei~p~~-   75 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFL-E--G-FPEWWPNNFRTTKVGAPLGVDKKG--GRWY-EIDEQGEE--HTFGLIRKVDEPD-   75 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHT-T--C-SSSSSSGGGSTTTTCSSCEEETTT--TEEE-CCCTTTSC--CCCEEEEEEETTT-
T ss_pred             EEEEEEEeCCHHHHHHHHH-h--h-hHhhcCCCCCCceEEEEEEeeCCC--ceEE-EEccccce--eeeEEEEEEecCc-
Confidence            6789999999999999996 6  4 56776532     22222222222  3332 22333321  3334678887776 


Q ss_pred             eEEEEEE-ecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCC--HHHHHHHHHHHHHHHHHHHHHHhcC
Q 044703           81 SYKYSLI-EGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLT--EEEIKEGKEKSLAMYKVVENYLMQN  155 (179)
Q Consensus        81 ~~~Y~ii-eG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~--~~~~~~~~e~~~~~~k~ie~yll~n  155 (179)
                      ++.|+-- .++.....-.....++.+++.++|+|.++.+  ....+.....  +.......+.-..++..|.+||-++
T Consensus        76 rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~--h~g~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~  151 (155)
T d1zxfa1          76 TLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVE--HTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEE  151 (155)
T ss_dssp             EEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEE--ECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCccccccccceEEEEEEEecCCCCEEEEEE--EeccCcccchhHHHHHhhhhhhHHHHHHHHHHHhhhh
Confidence            6777632 2221111122345778888887777777665  2222211111  1111112234567888888888654

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.98  E-value=2.9e-05  Score=55.81  Aligned_cols=95  Identities=11%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcceEE
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENFSYK   83 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (179)
                      ..+..++.|+||+++||+++. |... +.+|+++.  .     .+-.+|..-.+...+|    ...=++.++++. +++.
T Consensus         8 ~~i~~~~~i~ap~e~Vw~alT-dp~~-l~~W~~~~--~-----~~~~~G~~~~~~~~~g----~~~g~v~~~~p~-~~l~   73 (143)
T d1xn6a_           8 NDIKQTIVFNASIQKVWSVVS-TAEG-IASWFMPN--D-----FVLEVGHEFHVQSPFG----PSPCKVLEIDEP-NHLS   73 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTS-CSHH-HHTTSCCB--C-----CCCCTTCEECBCCTTC----CCCEEEEEEETT-TEEE
T ss_pred             CeEEEEEEECCCHHHHHHHhc-ChHH-hceEeecc--C-----cccccCceEEEecccc----ceeEEEEEEeCC-cEEE
Confidence            357889999999999999997 9998 88998741  1     2223343322222222    233466778665 5688


Q ss_pred             EEEEecCccccceeeEEEEEEeeecCCCCceEEEEEE
Q 044703           84 YSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTST  120 (179)
Q Consensus        84 Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~  120 (179)
                      |+--.+        ....++.++|.++|+|.++.+-.
T Consensus        74 ~tw~~~--------~~~v~~~l~~~~~G~T~l~l~h~  102 (143)
T d1xn6a_          74 FSWDTD--------GWVVSFDLKDLGDNKTEFTLIHG  102 (143)
T ss_dssp             EEETTT--------TEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEcCC--------CcEEEEEEEEcCCCcEEEEEEEe
Confidence            886211        13578889998887888887644

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.69  E-value=0.00028  Score=52.32  Aligned_cols=132  Identities=10%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCc--------------eeeeee
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGN--------------QVKCSK   69 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~--------------~~~~~k   69 (179)
                      .++..+..++||+++||+++. |... +.+|++..       +.+-.+|..-.+.+..++              ....+.
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlT-dpe~-l~~W~~p~-------~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLA-DADK-RARWLAGG-------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVAR   89 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHH-CHHH-HTTTSCCC-------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHh-ChHH-HhhhcCCC-------CccccCCCEEEEEecCCCCcccccccccccCCCceeEE
Confidence            457888899999999999997 9998 78887531       233344444444443211              112355


Q ss_pred             EEEeeeecCcceEEEEEEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 044703           70 NRVDALDLENFSYKYSLIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKSLAMYKVVE  149 (179)
Q Consensus        70 Erl~~~D~~~~~~~Y~iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~~~~~k~ie  149 (179)
                      =++.++++.+ .+.|+...++...  .  -..++++.|.++ +|.++.+-+  ..    ++.+......+.-...+..|.
T Consensus        90 g~v~~~~p~~-rl~~tw~~~~~~~--~--s~v~~~l~~~g~-gT~ltl~~~--~~----~~~~~~~~~~~GW~~~L~~L~  157 (183)
T d2k5ga1          90 HTLLRCEPPR-VLALTWGGGAGEA--P--SEVLFELSEAGE-QVRLVLTHT--RL----ADRAAMLDVAGGWHAHLAVLA  157 (183)
T ss_dssp             EEEEEEETTT-EEEEECCCCSSSS--C--CEEEEEEEECSS-SEEEEEEEE--CC----CSHHHHHHHTTTTTTHHHHHH
T ss_pred             EEEEEEeCCe-EEEEEeccCCCCC--c--EEEEEEEEEcCC-cEEEEEEEe--cC----CChhhHHHHhhhHHHHHHHHH
Confidence            6788888654 6788865544321  2  246788888764 677765533  11    222222223334567788888


Q ss_pred             HHHhcCc
Q 044703          150 NYLMQNP  156 (179)
Q Consensus       150 ~yll~n~  156 (179)
                      +||-..+
T Consensus       158 ~~leg~~  164 (183)
T d2k5ga1         158 GKLAGQA  164 (183)
T ss_dssp             HHHHTSC
T ss_pred             HHHCCCC
Confidence            9987654

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00051  Score=48.53  Aligned_cols=125  Identities=12%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             CccEEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeeecCcc
Q 044703            1 MGVFTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALDLENF   80 (179)
Q Consensus         1 M~~~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~   80 (179)
                      |=..++..+.+++||+++||+++- |... +.+|+....      +.|-.+|..  +.+..|.    +.=++.++++.. 
T Consensus         1 ~~T~~i~~~r~~~ap~e~Vw~a~t-dpe~-l~~W~~~~~------~~d~~~Gg~--f~~~~g~----~~G~~~ev~p~~-   65 (132)
T d1x53a1           1 IPTCKITLKETFLTSPEELYRVFT-TQEL-VQAFTHAPA------TLEADRGGK--FHMVDGN----VSGEFTDLVPEK-   65 (132)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHTT-CHHH-HHHHSCSCC------BCCCSTTCC--CBBTTTT----EECCEEEEETTT-
T ss_pred             CCceEEEEEEEECCCHHHHHHHHc-CHHH-HHhhhCCcc------ccccccCCE--EEEEecc----eeEEEEEEeCCC-
Confidence            445678889999999999999996 9888 788884311      233233321  2232332    233566677666 


Q ss_pred             eEEEE--EEecCccccceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHHHHHHHH-HHHHHHHHHHH
Q 044703           81 SYKYS--LIEGDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIKEGKEKS-LAMYKVVENYL  152 (179)
Q Consensus        81 ~~~Y~--iieG~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~e~~-~~~~k~ie~yl  152 (179)
                      ++.|+  .-+.+.  ...  -..+++++|.+ ++|.++.+-+.-|.       +..+..++.= ..++..|.+|+
T Consensus        66 rlv~tw~~~~~~~--~~~--s~vt~~l~~~~-~~T~l~l~~~g~p~-------~~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          66 HIVMKWRFKSWPE--GHF--ATITLTFIDKN-GETELCMEGRGIPA-------PEEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EEEEEEEETTSCT--TCC--EEEEEECCBCS-SCEEEEEEEEEEEH-------HHHHHHHHTTHHHHHHHHHHHT
T ss_pred             EEEEEEecCCCCC--CCc--EEEEEEEEECC-CcEEEEEEEECCCc-------chHHHHHhhHHHHHHHHHHHHc
Confidence            44444  433221  112  24678888875 57999888775542       1122223332 23577777664

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.013  Score=43.06  Aligned_cols=144  Identities=8%  Similarity=-0.094  Sum_probs=85.0

Q ss_pred             EEEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee--cCc---eeeeeeEEEeeeecC
Q 044703            4 FTVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV--EGN---QVKCSKNRVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~--~g~---~~~~~kErl~~~D~~   78 (179)
                      ..+..+..+++|++++++++. |... .++|.|. +.++++++..+.-..+-...+.  ...   +-..+--+...-++.
T Consensus        44 ~~~r~~~~i~~~~~~v~~~l~-d~~~-~~~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~  120 (199)
T d1jssa_          44 YLYKAQGVMDDVVNNVIDHIR-PGPW-RLDWDRL-MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEE  120 (199)
T ss_dssp             EEEEEEEEESSCHHHHHHHHS-SSTT-HHHHCSS-EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETT
T ss_pred             EEEEEEEEeCCCHHHHHHHHh-Chhh-hhhcccc-hheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCC
Confidence            346778899999999999996 9988 8999995 8899988764322333333232  111   111121122222333


Q ss_pred             cceEEEEEEecCccccc---eeeEEEEEEeeecCCC--CceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHHHHH
Q 044703           79 NFSYKYSLIEGDVLMDK---LEKISYDVKFEPTADG--GSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVENYL  152 (179)
Q Consensus        79 ~~~~~Y~iieG~~~~~~---~~~y~~ti~v~p~~~g--~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie~yl  152 (179)
                      ...+........+...+   ...+.+.+.++|.++|  +|.++|.+..++.+.  .|.-.++ .+......+++.|.+.|
T Consensus       121 ~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         121 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM--IPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32222222222221111   2345577888898765  689999888888764  3444443 34556677777777765

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.048  Score=40.15  Aligned_cols=145  Identities=8%  Similarity=-0.060  Sum_probs=85.0

Q ss_pred             EEEEEEEcCCHHHHHH-HhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEee-cCc-e---eeeeeEEEeeeecCc
Q 044703            6 VTDEYTSPISPARLFK-ALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVV-EGN-Q---VKCSKNRVDALDLEN   79 (179)
Q Consensus         6 v~~ei~i~apa~kvW~-~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~-~g~-~---~~~~kErl~~~D~~~   79 (179)
                      +..+..+++|++++++ ++. |.+. .++|.|. +.++++++--+.-..+-...+. ... +   -..+--|-...++..
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~-d~e~-~~~Wd~~-~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~  130 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVIL-QPER-MVLWNKT-VTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDR  130 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTT-CHHH-HTTTCTT-EEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSE
T ss_pred             EEEEEEEeCCHHHHHHHHHh-ChHH-HHHHHHH-HhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCc
Confidence            5677899999999986 664 8888 8999994 8888887642111122222222 111 1   123333433445555


Q ss_pred             ceEEEEEEecCcc--ccc---eeeEEEEEEeeecCC--CCceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHHHH
Q 044703           80 FSYKYSLIEGDVL--MDK---LEKISYDVKFEPTAD--GGSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVENY  151 (179)
Q Consensus        80 ~~~~Y~iieG~~~--~~~---~~~y~~ti~v~p~~~--g~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie~y  151 (179)
                      ..+....+.-+..  ..+   ...+.+.+.++|.++  ++|.++|.+..+|.+-.  |.-.++ .+......+++.|..+
T Consensus       131 ~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lrk~  208 (214)
T d1em2a_         131 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRL--PRYLIHQSLAATMFEFAFHLRQR  208 (214)
T ss_dssp             EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCCC--CHHHHHHHHHHhHHHHHHHHHHH
Confidence            4444443332211  111   133446666777544  57999999888887753  444443 3445677888888888


Q ss_pred             HhcC
Q 044703          152 LMQN  155 (179)
Q Consensus       152 ll~n  155 (179)
                      +.+-
T Consensus       209 ~~k~  212 (214)
T d1em2a_         209 ISEL  212 (214)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8653

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.33  E-value=0.1  Score=37.47  Aligned_cols=131  Identities=15%  Similarity=0.157  Sum_probs=76.4

Q ss_pred             EEEEEEEcCC---------HHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCceeeeeeEEEeeee
Q 044703            6 VTDEYTSPIS---------PARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQVKCSKNRVDALD   76 (179)
Q Consensus         6 v~~ei~i~ap---------a~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~~~~kErl~~~D   76 (179)
                      +++-++||-|         .+++|+-+...... =....| .+.+|++++.++ -+-.|.++|+++    .++|++. +.
T Consensus         3 feHlv~IN~p~~p~~p~LTr~QlW~GL~lrar~-p~~Fv~-~l~~c~v~~~~~-~~~~Rel~fg~~----~v~e~Vt-l~   74 (151)
T d2ffsa1           3 FEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVV-GLERFEILVDDG-DRLHRRLYLPGL----VVEDEVV-LK   74 (151)
T ss_dssp             EEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCT-TCCEEEEEEECS-SEEEEEEEETTE----EEEEEEE-EE
T ss_pred             ceEEEecCCCCCCCCCccCHHHHHHHHHHhhcC-Hhhccc-ccceEEEEEecC-CeEEEEEEECCc----eeEEEEE-Ec
Confidence            5666677665         35899998733333 224556 599999997653 368999999654    7999977 44


Q ss_pred             cCcceEEEEEEe-cCccccceeeEEEEEEeeecCCCCceEEEEEEEEE-cCC-CC---CCHHHHHH-HHHHHHHHHHHHH
Q 044703           77 LENFSYKYSLIE-GDVLMDKLEKISYDVKFEPTADGGSKNTMTSTYYT-KGN-IV---LTEEEIKE-GKEKSLAMYKVVE  149 (179)
Q Consensus        77 ~~~~~~~Y~iie-G~~~~~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~-~~~-~~---~~~~~~~~-~~e~~~~~~k~ie  149 (179)
                      +.. ++.|++-. |+..   -.+  .++.+....+|  -.-.++.|+. .++ .+   .-.+.++. .+++..+..+.|=
T Consensus        75 ~~~-~v~f~~~a~~~~~---g~~--l~~~Ieep~~g--~L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~IR  146 (151)
T d2ffsa1          75 APD-SAHYSIKPSAEVA---GGS--LDMTIEEPEPG--SLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIR  146 (151)
T ss_dssp             TTT-EEEEEECCCSSSB---EEE--EEEEEEEEETT--EEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc-EEEEEcccccCCC---CcE--EEEEEccCCCC--eEEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHHH
Confidence            444 56787654 2221   223  33444332233  4556667774 332 11   12334433 4566677777777


Q ss_pred             HHH
Q 044703          150 NYL  152 (179)
Q Consensus       150 ~yl  152 (179)
                      +|+
T Consensus       147 e~~  149 (151)
T d2ffsa1         147 DRF  149 (151)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.11  Score=37.71  Aligned_cols=143  Identities=16%  Similarity=0.064  Sum_probs=81.0

Q ss_pred             EEEEEEEEE-cCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCcee---eee-eEEEeeeecC
Q 044703            4 FTVTDEYTS-PISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQV---KCS-KNRVDALDLE   78 (179)
Q Consensus         4 ~~v~~ei~i-~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~~---~~~-kErl~~~D~~   78 (179)
                      ..+..+..| ++|++.++.++. |.+. .++|.|. +.++.....++.  .+-.+.+..-.+.   ..+ .-+....+++
T Consensus        45 ~~~k~~~~i~~~~~~~~~~~l~-d~~~-~~~Wd~~-~~~~~~~~~~~~--~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~  119 (203)
T d1ln1a_          45 YEYKVFGVLEDCSPTLLADIYM-DSDY-RKQWDQY-VKELYEQECNGE--TVVYWEVKYPFPMSNRDYVYLRQRRDLDME  119 (203)
T ss_dssp             EEEEEEEEETTSCHHHHHHHHH-CHHH-HHHHCTT-EEEEEEEEETTE--EEEEEEECCCTTSCCEEEEEEEEEEEECST
T ss_pred             EEEEEEEEEcCCCHHHHHHHHc-CHhH-hhhhccc-ceEEEEEccCCc--EEEEEEcccccccCCceEEEEEEEEEccCC
Confidence            456677788 599999999997 9988 8999996 556543333221  2333333322111   112 1122223333


Q ss_pred             cceEEEEE---Ee-cCccc----cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCCCCCHHHHH-HHHHHHHHHHHHHH
Q 044703           79 NFSYKYSL---IE-GDVLM----DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNIVLTEEEIK-EGKEKSLAMYKVVE  149 (179)
Q Consensus        79 ~~~~~Y~i---ie-G~~~~----~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~e~~~~~~k~ie  149 (179)
                      ...+...+   .+ .+++.    .....+.+.+.++|.++++|.+++...-+|.+.  .|.-.++ .++.....+++.|.
T Consensus       120 ~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~l~  197 (203)
T d1ln1a_         120 GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMA  197 (203)
T ss_dssp             TCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCc--CHHHHHHHHHHHHHHHHHHHHH
Confidence            32222211   11 11110    113456778899999888999999988777653  3444443 34455667777777


Q ss_pred             HHHh
Q 044703          150 NYLM  153 (179)
Q Consensus       150 ~yll  153 (179)
                      ...+
T Consensus       198 k~~~  201 (203)
T d1ln1a_         198 RACQ  201 (203)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.92  E-value=6  Score=27.87  Aligned_cols=118  Identities=13%  Similarity=0.031  Sum_probs=64.3

Q ss_pred             EEEEEEEEcCCHHHHHHHhhhccCcccccccCcceeEEEEEcCCCCCceEEEEEeecCce---eeeeeEEEeeeecCc--
Q 044703            5 TVTDEYTSPISPARLFKALIVDSHNLIPKLMPQAVKSIEIFEGDGGAGSIRQINVVEGNQ---VKCSKNRVDALDLEN--   79 (179)
Q Consensus         5 ~v~~ei~i~apa~kvW~~~~~d~~~llp~~~P~~v~sve~~eGdg~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~--   79 (179)
                      .+..+.+++++++++...+-.|    -+.|.|. +..+++++--+.--.|-...+..-.+   -..+--+-...|.++  
T Consensus        45 ~~k~~~~i~a~~~~vl~~~l~~----r~~Wd~~-~~~~~~le~~~~~~~i~y~~~~~p~pvs~RD~v~~~~~~~~~~~~~  119 (197)
T d2psoa1          45 LWKASVEVEAPPSVVLNRVLRE----RHLWDED-FVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGM  119 (197)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHC----GGGTCTT-BCCCEEEEEEETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGC
T ss_pred             EEEEEEEEcCCHHHHHHHHHHh----HHHHhhh-hheEEEEEEcCCCCEEEEEEccCCCcccceeEEEEEEEEEeCCCCE
Confidence            4566778999999987655323    3589985 77777776321101222222221111   112222222233333  


Q ss_pred             ceEEEEEEecCccc----cceeeEEEEEEeeecCCCCceEEEEEEEEEcCCC
Q 044703           80 FSYKYSLIEGDVLM----DKLEKISYDVKFEPTADGGSKNTMTSTYYTKGNI  127 (179)
Q Consensus        80 ~~~~Y~iieG~~~~----~~~~~y~~ti~v~p~~~g~s~v~W~~~ye~~~~~  127 (179)
                      ..+...-++.+..+    --...+.+.+.++|.++++|.+++.+..+|.+..
T Consensus       120 ~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~Dp~G~i  171 (197)
T d2psoa1         120 CTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHS  171 (197)
T ss_dssp             EEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSC
T ss_pred             EEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEEEECCCCcC
Confidence            33333333332111    0134466778889999889999999999987653