Citrus Sinensis ID: 044788

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
NKNLRQIIPHKAMGQEQETISQVPFLEDQQQQQSTITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEKLDNEDVN
cccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHcEEEEcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccc
cccHHHHccccccccccccccccccHccccccccccccHccEcccHcEEEEEEEHHcccccEEcccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
nknlrqiiphkamgqeqetisqvpfledqqqqQSTITVTSKKLSLLPLIFLIYFEvaggpygeepavgaagpLFAILGFLIFPFIWSIPEALVTAElattfpgnggYVIWAHhafgpfwgslmGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTViaipkidsirwislgqngvpknWRLFFNTLFWNLNFWDNASTlageveqpqrtfpkaLFSAGLLTCVAYLLPLlaatgaipldqqnwvDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGmtnlgllpkvfgsrsswfhtpwVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRkklpatkrpfrvpMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRsnkwlefknfeekldnedvn
nknlrqiiphkamgqeqETISQVPFLEDQQQQQSTITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEfknfeekldnedvn
NKNLRQIIPHKAMGQEQETISQVPFLEDqqqqqSTITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKnwrlffntlfwnlnfwDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEKLDNEDVN
***********************************ITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEFKNF**********
*********************************************LPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLC*********************
NKNLRQIIPHKAMGQEQETISQVPFLE**********VTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEKLDNEDVN
**************************************TSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCR********************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NKNLRQIIPHKAMGQEQETISQVPFLEDQQQQQSTITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEKLDNEDVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
Q9LHN7478 Probable polyamine transp yes no 0.964 0.974 0.622 1e-167
Q9FFL1490 Polyamine transporter RMV no no 0.892 0.879 0.483 1e-117
Q9C6S5495 Probable polyamine transp no no 0.960 0.937 0.434 1e-115
Q6Z8D0531 Polyamine transporter PUT yes no 0.950 0.864 0.442 1e-114
A2X8M8531 Polyamine transporter PUT N/A no 0.950 0.864 0.442 1e-114
Q9LH39479 Probable polyamine transp no no 0.935 0.943 0.467 1e-113
Q9C6S4482 Probable polyamine transp no no 0.906 0.908 0.457 1e-108
O34739438 Serine/threonine exchange yes no 0.753 0.831 0.23 1e-12
P60066445 Arginine/agmatine antipor yes no 0.641 0.696 0.250 2e-10
P60065445 Arginine/agmatine antipor N/A no 0.641 0.696 0.250 2e-10
>sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1 Back     alignment and function desciption
 Score =  588 bits (1516), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/472 (62%), Positives = 361/472 (76%), Gaps = 6/472 (1%)

Query: 12  AMGQEQETISQVPFLEDQQQQQSTITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAG 71
           A+ +  ++  ++P       + S    T+KKL+L+PL+FLIYFEVAGGP+GEEPAV AAG
Sbjct: 2   AISEASKSSHELPV---TTAESSGKKATAKKLTLIPLVFLIYFEVAGGPFGEEPAVQAAG 58

Query: 72  PLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSG 131
           PL AILGFLIFPFIWSIPEAL+TAEL+T FPGNGG+VIWAH AFG F GS+MGS KFLSG
Sbjct: 59  PLLAILGFLIFPFIWSIPEALITAELSTAFPGNGGFVIWAHRAFGSFVGSMMGSLKFLSG 118

Query: 132 VINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVV 191
           VIN+AS+P+LC+ YL  +FP+  SG+   + IF  T+VLSFLNYTGLAIVGY AV LG+V
Sbjct: 119 VINVASFPVLCVTYLDKLFPVLESGWPRNVCIFASTVVLSFLNYTGLAIVGYAAVVLGLV 178

Query: 192 SLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQP 251
           SL PFL ++ +AIPKI   RW SLG     K+W L+FNTLFWNLNFWDN STLAGEV++P
Sbjct: 179 SLSPFLVMSAMAIPKIKPHRWGSLGTK--KKDWNLYFNTLFWNLNFWDNVSTLAGEVDEP 236

Query: 252 QRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEI 311
           Q+TFP AL  A + TCVAYL+PL A TGA+ +DQ  W +G+ AE AE+IAGKWLKI IEI
Sbjct: 237 QKTFPLALLIAVIFTCVAYLIPLFAVTGAVSVDQSRWENGFHAEAAEMIAGKWLKIWIEI 296

Query: 312 GACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSY 371
           GA LS IGL+EAQLS+ AYQ+ GM  LG LPK FG RS WF+TPWVGI IS L++L +SY
Sbjct: 297 GAVLSSIGLFEAQLSSSAYQLEGMAELGFLPKFFGVRSKWFNTPWVGILISALMSLGLSY 356

Query: 372 MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLV 431
           M+FT+IIS  NFLY+LGM LEFASF+WLR+KLP  KRP+RVP+++ GL+ MC+IPS FLV
Sbjct: 357 MNFTDIISSANFLYTLGMFLEFASFIWLRRKLPQLKRPYRVPLKIPGLVVMCLIPSAFLV 416

Query: 432 YVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEKLDNEDVN 483
            ++V ATK+V  +  ++T   I  YF I   R  K  EF    + LDN +VN
Sbjct: 417 LILVFATKIVYLICGVMTIGAIGWYFLINYFRKTKIFEFNEVIDDLDN-NVN 467
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFL1|RMV1_ARATH Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C6S5|PHSB_ARATH Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z8D0|PUT1_ORYSJ Polyamine transporter PUT1 OS=Oryza sativa subsp. japonica GN=PUT1 PE=1 SV=1 Back     alignment and function description
>sp|A2X8M8|PUT1_ORYSI Polyamine transporter PUT1 OS=Oryza sativa subsp. indica GN=PUT1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LH39|PHSD_ARATH Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1 Back     alignment and function description
>sp|Q9C6S4|PHSA_ARATH Probable polyamine transporter At1g31820 OS=Arabidopsis thaliana GN=At1g31820 PE=3 SV=1 Back     alignment and function description
>sp|O34739|STET_BACSU Serine/threonine exchanger SteT OS=Bacillus subtilis (strain 168) GN=steT PE=1 SV=1 Back     alignment and function description
>sp|P60066|ADIC_SALTY Arginine/agmatine antiporter OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=adiC PE=1 SV=1 Back     alignment and function description
>sp|P60065|ADIC_SALTI Arginine/agmatine antiporter OS=Salmonella typhi GN=adiC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
224057042469 neutral amino acid transport protein [Po 0.966 0.995 0.725 0.0
225435718475 PREDICTED: uncharacterized transporter l 0.975 0.991 0.701 0.0
356525247483 PREDICTED: uncharacterized transporter l 0.966 0.966 0.680 0.0
356510946482 PREDICTED: uncharacterized transporter l 0.966 0.968 0.672 0.0
357518835484 Neutral amino acid transport protein [Me 0.954 0.952 0.670 0.0
356551723481 PREDICTED: cystine/glutamate transporter 0.927 0.931 0.660 1e-176
356500723470 PREDICTED: arginine/agmatine antiporter- 0.904 0.929 0.683 1e-174
255572268465 amino acid transporter, putative [Ricinu 0.946 0.982 0.645 1e-173
224057048471 neutral amino acid transport protein [Po 0.946 0.970 0.648 1e-172
357489775467 Neutral amino acid transport protein [Me 0.913 0.944 0.671 1e-170
>gi|224057042|ref|XP_002299116.1| neutral amino acid transport protein [Populus trichocarpa] gi|222846374|gb|EEE83921.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/473 (72%), Positives = 394/473 (83%), Gaps = 6/473 (1%)

Query: 9   PHKAMGQEQETISQVPFLEDQQQQQSTITVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVG 68
           PH +    Q        LE Q    +T T +  KL+L+PL+FLI+FEV+GGPYGEE AVG
Sbjct: 3   PHLSSSNTQH------LLEQQPPTTTTTTTSHGKLALIPLVFLIFFEVSGGPYGEESAVG 56

Query: 69  AAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAFGPFWGSLMGSWKF 128
           AAGPL+AILGFLIFPFIWSIPEALVTAELAT FPGNGG+VIWAH AFGPFWGSLMGSWKF
Sbjct: 57  AAGPLWAILGFLIFPFIWSIPEALVTAELATAFPGNGGFVIWAHQAFGPFWGSLMGSWKF 116

Query: 129 LSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTL 188
           L+GV+NLASYP+LCIDYLKLVFP+F+SG   Y+AI V TLVLSFLNYTGLAIVGYTAVTL
Sbjct: 117 LTGVLNLASYPVLCIDYLKLVFPVFSSGVPRYIAILVSTLVLSFLNYTGLAIVGYTAVTL 176

Query: 189 GVVSLIPFLFLTVIAIPKIDSIRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEV 248
           G+VSL PF+ LT+++IPKID  RWISLGQ GV K+W LFFNTLFWNLNFWD+ASTLAGEV
Sbjct: 177 GIVSLSPFVVLTLVSIPKIDPSRWISLGQKGVQKDWTLFFNTLFWNLNFWDSASTLAGEV 236

Query: 249 EQPQRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKIC 308
           EQPQRTFP AL SAG+LTC+ YL+PLLAATGAIPL Q++W DGYFA VAE++AGKWLK  
Sbjct: 237 EQPQRTFPIALLSAGVLTCLGYLVPLLAATGAIPLSQEDWTDGYFAYVAEMVAGKWLKFW 296

Query: 309 IEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALT 368
           +EIGACLS+IGLYEAQLS+CAYQ+LGM +LG LP+ FG RS WF+TPWV I +ST+IAL 
Sbjct: 297 MEIGACLSVIGLYEAQLSSCAYQVLGMADLGFLPQFFGVRSKWFNTPWVAILVSTVIALA 356

Query: 369 VSYMDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSG 428
             YMDF +IIS VNFLYSLGMLLEFASFLWLR+K+P+  RPFRVPM + GLI MC+IPS 
Sbjct: 357 GCYMDFADIISSVNFLYSLGMLLEFASFLWLRRKMPSIDRPFRVPMGLPGLIIMCLIPSV 416

Query: 429 FLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEKLDNED 481
           FLVYVM VAT+ V  VS +LT  GI  YFF+K C+S  WL+F N  EKL+ ED
Sbjct: 417 FLVYVMAVATRTVYMVSFILTVLGILWYFFMKFCKSKMWLQFNNTGEKLEYED 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435718|ref|XP_002283531.1| PREDICTED: uncharacterized transporter lpg1691-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356525247|ref|XP_003531238.1| PREDICTED: uncharacterized transporter lpg1691-like [Glycine max] Back     alignment and taxonomy information
>gi|356510946|ref|XP_003524194.1| PREDICTED: uncharacterized transporter lpg1691-like [Glycine max] Back     alignment and taxonomy information
>gi|357518835|ref|XP_003629706.1| Neutral amino acid transport protein [Medicago truncatula] gi|355523728|gb|AET04182.1| Neutral amino acid transport protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356551723|ref|XP_003544223.1| PREDICTED: cystine/glutamate transporter-like [Glycine max] Back     alignment and taxonomy information
>gi|356500723|ref|XP_003519181.1| PREDICTED: arginine/agmatine antiporter-like [Glycine max] Back     alignment and taxonomy information
>gi|255572268|ref|XP_002527073.1| amino acid transporter, putative [Ricinus communis] gi|223533578|gb|EEF35317.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224057048|ref|XP_002299117.1| neutral amino acid transport protein [Populus trichocarpa] gi|222846375|gb|EEE83922.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357489775|ref|XP_003615175.1| Neutral amino acid transport protein [Medicago truncatula] gi|355516510|gb|AES98133.1| Neutral amino acid transport protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
TAIR|locus:2086794478 PUT4 "POLYAMINE UPTAKE TRANSPO 0.915 0.924 0.624 3.5e-146
TAIR|locus:2101520479 PUT5 "POLYAMINE UPTAKE TRANSPO 0.886 0.893 0.478 2e-104
TAIR|locus:2166354490 RMV1 "resistant to methyl viol 0.888 0.875 0.458 3.7e-103
TAIR|locus:2034451495 PUT2 "POLYAMINE UPTAKE TRANSPO 0.958 0.935 0.410 9.1e-100
UNIPROTKB|Q6Z8D0531 PUT1 "Polyamine transporter PU 0.888 0.807 0.446 3.1e-99
TAIR|locus:2034461482 PUT1 "POLYAMINE UPTAKE TRANSPO 0.884 0.885 0.439 3.9e-99
DICTYBASE|DDB_G0267504488 DDB_G0267504 "putative amino a 0.817 0.809 0.274 2.5e-42
TIGR_CMR|BA_5261438 BA_5261 "amino acid permease f 0.792 0.874 0.23 6.1e-17
TIGR_CMR|BA_3141471 BA_3141 "amino acid permease f 0.790 0.811 0.240 3.1e-14
TIGR_CMR|BA_0593471 BA_0593 "amino acid permease f 0.815 0.836 0.254 6.8e-14
TAIR|locus:2086794 PUT4 "POLYAMINE UPTAKE TRANSPORTER 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 278/445 (62%), Positives = 336/445 (75%)

Query:    39 TSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELA 98
             T+KKL+L+PL+FLIYFEVAGGP+GEEPAV AAGPL AILGFLIFPFIWSIPEAL+TAEL+
Sbjct:    26 TAKKLTLIPLVFLIYFEVAGGPFGEEPAVQAAGPLLAILGFLIFPFIWSIPEALITAELS 85

Query:    99 TTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFS 158
             T FPGNGG+VIWAH AFG F GS+MGS KFLSGVIN+AS+P+LC+ YL  +FP+  SG+ 
Sbjct:    86 TAFPGNGGFVIWAHRAFGSFVGSMMGSLKFLSGVINVASFPVLCVTYLDKLFPVLESGWP 145

Query:   159 HYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQN 218
               + IF  T+VLSFLNYTGLAIVGY AV LG+VSL PFL ++ +AIPKI   RW SLG  
Sbjct:   146 RNVCIFASTVVLSFLNYTGLAIVGYAAVVLGLVSLSPFLVMSAMAIPKIKPHRWGSLGTK 205

Query:   219 GVPKXXXXXXXXXXXXXXXXDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLLAAT 278
                K                DN STLAGEV++PQ+TFP AL  A + TCVAYL+PL A T
Sbjct:   206 --KKDWNLYFNTLFWNLNFWDNVSTLAGEVDEPQKTFPLALLIAVIFTCVAYLIPLFAVT 263

Query:   279 GAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNL 338
             GA+ +DQ  W +G+ AE AE+IAGKWLKI IEIGA LS IGL+EAQLS+ AYQ+ GM  L
Sbjct:   264 GAVSVDQSRWENGFHAEAAEMIAGKWLKIWIEIGAVLSSIGLFEAQLSSSAYQLEGMAEL 323

Query:   339 GLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYMDFTNIISCVNFLYSLGMLLEFASFLW 398
             G LPK FG RS WF+TPWVGI IS L++L +SYM+FT+IIS  NFLY+LGM LEFASF+W
Sbjct:   324 GFLPKFFGVRSKWFNTPWVGILISALMSLGLSYMNFTDIISSANFLYTLGMFLEFASFIW 383

Query:   399 LRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFF 458
             LR+KLP  KRP+RVP+++ GL+ MC+IPS FLV ++V ATK+V  +  ++T   I  YF 
Sbjct:   384 LRRKLPQLKRPYRVPLKIPGLVVMCLIPSAFLVLILVFATKIVYLICGVMTIGAIGWYFL 443

Query:   459 IKLCRSNKWLEFKNFEEKLDNEDVN 483
             I   R  K  EF    + LDN +VN
Sbjct:   444 INYFRKTKIFEFNEVIDDLDN-NVN 467
GO:0005886 "plasma membrane" evidence=ISM
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0046520 "sphingoid biosynthetic process" evidence=RCA
GO:0015203 "polyamine transmembrane transporter activity" evidence=IGI;IDA
GO:0015846 "polyamine transport" evidence=IDA
TAIR|locus:2101520 PUT5 "POLYAMINE UPTAKE TRANSPORTER 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166354 RMV1 "resistant to methyl viologen 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034451 PUT2 "POLYAMINE UPTAKE TRANSPORTER 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z8D0 PUT1 "Polyamine transporter PUT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2034461 PUT1 "POLYAMINE UPTAKE TRANSPORTER 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267504 DDB_G0267504 "putative amino acid permease" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5261 BA_5261 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3141 BA_3141 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0593 BA_0593 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z8D0PUT1_ORYSJNo assigned EC number0.44230.95030.8644yesno
Q9LHN7PHSC_ARATHNo assigned EC number0.62280.96480.9748yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 7e-34
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 6e-29
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 6e-24
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 2e-15
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 2e-15
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 5e-15
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 2e-14
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 4e-14
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 2e-12
pfam00324473 pfam00324, AA_permease, Amino acid permease 2e-12
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 2e-08
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 5e-05
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 1e-04
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 2e-04
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 8e-04
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 8e-04
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 9e-04
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 0.001
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
 Score =  132 bits (334), Expect = 7e-34
 Identities = 114/456 (25%), Positives = 179/456 (39%), Gaps = 19/456 (4%)

Query: 40  SKKLSLLPLIF-LIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELA 98
            KKL L  L+  L    + G      P   A     AIL +LI   I  +  AL  AEL+
Sbjct: 11  KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGII-ILFLALSYAELS 69

Query: 99  TTFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFP----IFA 154
           +  P  GG   +A  A GP  G L G    L+ VI LA+  I    YL  +FP    +  
Sbjct: 70  SAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSI 129

Query: 155 SGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWIS 214
                 L    +  +L+ LN  G+         + ++ +I  L   ++ +          
Sbjct: 130 GPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNL 189

Query: 215 LGQNGVPKN----WRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAY 270
                                F+    ++  +TLA EV+ P+RT P+A+  + L+  + Y
Sbjct: 190 FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILY 249

Query: 271 LLPLLAATGAIPLDQQNWV--DGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNC 328
           +L  L   G +P             A  A    G W  I I I A LS+ G   A +   
Sbjct: 250 ILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAV 309

Query: 329 AYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTV------SYMDFTNIISCVN 382
           +  +  M   GLLPK F   +    TP + + ++ +I+L +      S + F  ++S  +
Sbjct: 310 SRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLAS 369

Query: 383 FLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVC 442
             + +  LL   + L LR+K P  KRPFR+P+  L  I   +     L+Y +  +     
Sbjct: 370 VAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVA-VLLLLYALYASGLPPL 428

Query: 443 FVSALLTFFGIFLYFFIKLCRSNKWLEFKNFEEKLD 478
            +  +L   GI +Y  + L            E K  
Sbjct: 429 LLGVILIAGGIIIYLLVYLGLGRLLSAILIAEAKAG 464

Length = 466
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.97
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.92
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.91
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.91
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.9
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.9
PRK10483414 tryptophan permease; Provisional 99.88
PHA02764399 hypothetical protein; Provisional 99.88
PRK09664415 tryptophan permease TnaB; Provisional 99.87
PRK15132403 tyrosine transporter TyrP; Provisional 99.87
TIGR00814397 stp serine transporter. The HAAAP family includes 99.85
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.81
PRK13629443 threonine/serine transporter TdcC; Provisional 99.81
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.75
PF03845320 Spore_permease: Spore germination protein; InterPr 99.67
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.61
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.58
COG3949349 Uncharacterized membrane protein [Function unknown 99.54
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.52
PLN03074473 auxin influx permease; Provisional 99.5
PTZ00206467 amino acid transporter; Provisional 99.47
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.41
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.34
PRK11375484 allantoin permease; Provisional 99.31
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 99.13
COG1457442 CodB Purine-cytosine permease and related proteins 99.04
PRK11017404 codB cytosine permease; Provisional 98.99
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.97
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.95
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.9
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.87
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.84
TIGR00813407 sss transporter, SSS family. have different number 98.75
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.68
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.64
PRK12488549 acetate permease; Provisional 98.59
PRK10484523 putative transporter; Provisional 98.58
PRK15433439 branched-chain amino acid transport system 2 carri 98.57
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.57
PRK15419502 proline:sodium symporter PutP; Provisional 98.56
PRK09395551 actP acetate permease; Provisional 98.52
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.51
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.5
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.5
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.48
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.43
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.37
PRK00701439 manganese transport protein MntH; Reviewed 98.35
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 98.32
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.22
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.2
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.16
PLN00150 779 potassium ion transporter family protein; Provisio 98.12
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 98.0
PRK10745 622 trkD potassium transport protein Kup; Provisional 97.99
PLN00149 779 potassium transporter; Provisional 97.94
KOG4303524 consensus Vesicular inhibitory amino acid transpor 97.85
PLN00151 852 potassium transporter; Provisional 97.82
PLN00148 785 potassium transporter; Provisional 97.81
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 97.51
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 97.36
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.24
COG4147529 DhlC Predicted symporter [General function predict 96.91
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.01
PF1390651 AA_permease_C: C-terminus of AA_permease 94.89
PRK09928679 choline transport protein BetT; Provisional 94.17
KOG3659629 consensus Sodium-neurotransmitter symporter [Signa 94.12
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 91.72
KOG2466572 consensus Uridine permease/thiamine transporter/al 90.08
PRK09950506 putative transporter; Provisional 89.97
TIGR00842453 bcct choline/carnitine/betaine transport. properti 89.53
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 87.8
PRK15049499 L-asparagine permease; Provisional 84.67
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 84.51
COG1292537 BetT Choline-glycine betaine transporter [Cell env 83.92
KOG2349585 consensus Na+:iodide/myo-inositol/multivitamin sym 82.06
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=2.6e-55  Score=450.09  Aligned_cols=423  Identities=22%  Similarity=0.266  Sum_probs=357.9

Q ss_pred             cccccccccchhHHHhhhhhhcc-cccCchhhHh--hhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHH
Q 044788           36 ITVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVG--AAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAH  112 (483)
Q Consensus        36 ~~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~--~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~  112 (483)
                      +++++|+++.++++++++|.++| |+|.+++...  .+|| ..+++|+++++. +++.+++|+|+++++|++||.|.|++
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp-~~~ls~liagv~-~l~~al~yaElas~~P~sGg~Y~y~~  100 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGP-AIVLSFLISGLA-AVLSGFCYAEFGARVPKAGSAYLYSY  100 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcceeeHH
Confidence            44689999999999999999999 8888877643  3899 588999999998 99999999999999999999999999


Q ss_pred             HHhCChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc-----------ccc---hHHHHHHHHHHHHHHHHHhhch
Q 044788          113 HAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIF-----------ASG---FSHYLAIFVVTLVLSFLNYTGL  178 (483)
Q Consensus       113 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~i~~~g~  178 (483)
                      +.+|+.+||++||.+++++....+..+...+.|+..+++..           ..+   ......+++++++++.+|++|+
T Consensus       101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi  180 (557)
T TIGR00906       101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV  180 (557)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence            99999999999999999999999998888888887665320           001   1223456667778889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC---CC-CCCchHHHH---HHHHHHhcchHhhhhhhhhccCc
Q 044788          179 AIVGYTAVTLGVVSLIPFLFLTVIAIPKIDSIRWISLGQ---NG-VPKNWRLFF---NTLFWNLNFWDNASTLAGEVEQP  251 (483)
Q Consensus       179 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~~---~~~~~a~~G~e~~~~~~~E~k~p  251 (483)
                      |.++++|.+++.++++.++++++.++.+.+.+++.....   ++ .+.++.+++   ...+|+|.|+|.+++++||+|||
T Consensus       181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP  260 (557)
T TIGR00906       181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNP  260 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCc
Confidence            999999999999999988888888877766666542111   01 133444443   45789999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 044788          252 QRTFPKALFSAGLLTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQ  331 (483)
Q Consensus       252 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~  331 (483)
                      +||+||+++.++.+++++|++...+..+..|+++.+ .+.|+...++..+.++...++.++.+++.+++.++.+++.+|+
T Consensus       261 ~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~-~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi  339 (557)
T TIGR00906       261 QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD-PDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV  339 (557)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhC-cCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887665 4568888888888788888889999999999999999999999


Q ss_pred             HHHhhhcCCCchhhhccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Q 044788          332 ILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVS-YMDFTNIISCVNFLYSLGMLLEFASFLWLRKK--------  402 (483)
Q Consensus       332 l~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~--------  402 (483)
                      +++|||||.+|++|+|+|||+++|++++++..+++.++. +.+++.+.++.+++.++.|.+++++++.+|++        
T Consensus       340 l~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~  419 (557)
T TIGR00906       340 IYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQA  419 (557)
T ss_pred             HHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence            999999999999999999999999999999999987766 56789999999999999999999999998843        


Q ss_pred             ----------------------------------------------------------------------------CCCC
Q 044788          403 ----------------------------------------------------------------------------LPAT  406 (483)
Q Consensus       403 ----------------------------------------------------------------------------~~~~  406 (483)
                                                                                                  +|+.
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (557)
T TIGR00906       420 KDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQN  499 (557)
T ss_pred             ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                                                                                        3333


Q ss_pred             --CCCcccCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044788          407 --KRPFRVPMEMLGLIFMCIIPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRSN  465 (483)
Q Consensus       407 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  465 (483)
                        +|+||.|..++.    ..++...+++.+...++.+++...+|+++|+++|+.|-+++.+
T Consensus       500 ~~~~~f~~p~~p~~----p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~  556 (557)
T TIGR00906       500 KQKVAFKVPLVPFL----PALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSL  556 (557)
T ss_pred             CCCCCCCCCCchHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence              567888887543    3445667778888889999999999999999999998776654

>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 2e-09
3ob6_A445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 2e-08
3lrb_A445 Structure Of E. Coli Adic Length = 445 3e-08
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 5e-08
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 5e-04
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 5e-04
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 130/333 (39%), Gaps = 21/333 (6%)
Query: 40  SKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELAT 99
           + K+ L+P+  ++   + G      PA  AA    AI G+L+   I ++  ++V A++++
Sbjct: 7   AHKVGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLV-TIIGALALSMVYAKMSS 65
Query: 100 TFPGNGGYVIWAHHAFGPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSH 159
             P  GG   +A   FGPF G       +L+  I   +  ++ + YL   FPI       
Sbjct: 66  LDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVL 125
Query: 160 YLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIPFLFLTVIA----IPKIDSIRWISL 215
            L    V  +   LN  G  ++        V++L+P + + V        +     W   
Sbjct: 126 TLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGETYMAAWNVS 185
Query: 216 GQNGVPKXXXXXXXXXXXXXXXXDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLLPLL 275
           G N                    ++AS  AG V+ P+R  P A     L+  V Y+L   
Sbjct: 186 GMNTF-GAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTT 244
Query: 276 AATGAIPLDQQNWVDGYFAEVAEI----IAGKWLKICIEIGACLSIIG---LYEAQLSNC 328
           A  G IP          F + A +     AG  +  C   G CL  +G   L   Q +  
Sbjct: 245 AIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAG-CLGSLGGWTLLAGQTAKA 303
Query: 329 AYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFI 361
           A       + GL P +F +R +   TP  G+ I
Sbjct: 304 A------ADDGLFPPIF-ARVNKAGTPVAGLLI 329
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 2e-48
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 6e-44
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score =  173 bits (439), Expect = 2e-48
 Identities = 72/429 (16%), Positives = 142/429 (33%), Gaps = 31/429 (7%)

Query: 37  TVTSKKLSLLPLIFLIYFEVAGGPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAE 96
           T  +K+L+LL    +    V      E P    +G    +   L+   +W IP  L  AE
Sbjct: 7   TGKAKQLTLLGFFAITASMVMA--VYEYPTFATSGFS-LVFFLLLGGILWFIPVGLCAAE 63

Query: 97  LATTFP-GNGGYVIWAHHAFGPFWGSLMGSWKFLS---GVINLASYPILCIDYLKLVFPI 152
           +AT      GG   W  +  GP WG    S+ +L    G I +  + +  + Y+     +
Sbjct: 64  MATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPAL 123

Query: 153 FASGFSHYLAIFVVTLVLSFLNYTGLAIVGY-TAVTLGVVSLIPFLFLTVIAIPKIDS-- 209
                +  +A  ++   L+   + G         V      L+P   L  +A   + S  
Sbjct: 124 NEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGA 183

Query: 210 -----IRWISLGQNGVPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGL 264
                +   +   +       + F     +    + ++T   E+  P R +P A+    +
Sbjct: 184 PVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMV 243

Query: 265 LTCVAYLLPLLAATGAIPLDQQNWVDGYFAEVAEIIA-----GKWLKICIEIGACLSIIG 319
                  +  L+    IP ++ N   G       +++      +W    I     L ++ 
Sbjct: 244 AAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLA 303

Query: 320 LYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWFHTPWVGIFISTLIALTVSYM------- 372
              + +   +  +       LLP  F   +     P   +    +I      +       
Sbjct: 304 EIASWIVGPSRGMYVTAQKNLLPAAFAKMNK-NGVPVTLVISQLVITSIALIILTNTGGG 362

Query: 373 ---DFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCIIPSGF 429
               F   ++    +Y     + F  ++ L  K P  KR F +P      + + I+    
Sbjct: 363 NNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLT 422

Query: 430 LVYVMVVAT 438
            +   +V+ 
Sbjct: 423 SIMAFIVSF 431
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.35
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.77
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.59
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 98.14
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 92.58
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 88.85
4ain_A539 Glycine betaine transporter BETP; membrane protein 80.26
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=2.2e-53  Score=430.02  Aligned_cols=417  Identities=20%  Similarity=0.285  Sum_probs=355.8

Q ss_pred             ccccccccchhHHHhhhhhhcc-cccCchhhHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCChHHHhHHHHh
Q 044788           37 TVTSKKLSLLPLIFLIYFEVAG-GPYGEEPAVGAAGPLFAILGFLIFPFIWSIPEALVTAELATTFPGNGGYVIWAHHAF  115 (483)
Q Consensus        37 ~~~~r~l~~~~~~~~~i~~~iG-g~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l~~~el~~~~p~~Gg~y~~~~~~~  115 (483)
                      ++++|++++++..++.++.++| |++..|..+..+|+ ..+++|++++++ .++.+++++|+++++|++||.|+|+++.+
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            3567899999999999999999 78888888778888 577899999988 99999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 044788          116 GPFWGSLMGSWKFLSGVINLASYPILCIDYLKLVFPIFASGFSHYLAIFVVTLVLSFLNYTGLAIVGYTAVTLGVVSLIP  195 (483)
Q Consensus       116 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~  195 (483)
                      ||.+|++.||.+++++....+..+...++++..++|...++++..+++++++++.+.+|++|+|..++++.+.+.++++.
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~  161 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIP  161 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998999999999999888876666778888999999999999999999999999999999988


Q ss_pred             HHHHHHHHhcccccccccc-cCCCC--CCCchHHHHHHHHHHhcchHhhhhhhhhccCcCcchHHHHHHHHHHHHHHHHH
Q 044788          196 FLFLTVIAIPKIDSIRWIS-LGQNG--VPKNWRLFFNTLFWNLNFWDNASTLAGEVEQPQRTFPKALFSAGLLTCVAYLL  272 (483)
Q Consensus       196 ~~~~~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~l  272 (483)
                      ++++++.++.+.+++++.+ +.+.+  ...++...+...+|+|.|+|..++++||+|||+|++||+++.+..+++++|++
T Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~  241 (445)
T 3l1l_A          162 IVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVL  241 (445)
T ss_dssp             HHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence            8888887776665554422 22111  01234445566789999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCCCccccHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCCchhhhccCCCC
Q 044788          273 PLLAATGAIPLDQQNWVDGYFAEVAEIIAGKWLKICIEIGACLSIIGLYEAQLSNCAYQILGMTNLGLLPKVFGSRSSWF  352 (483)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~  352 (483)
                      ..+......|+++....+.|+.++++...+++...++.++.+++.+++.++.+++.+|.+++|||||.+|++|+|+|| +
T Consensus       242 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~-~  320 (445)
T 3l1l_A          242 STTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK-A  320 (445)
T ss_dssp             HHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCT-T
T ss_pred             HHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCC-C
Confidence            999999999998888788899999999999999999999999999999999999999999999999999999999997 7


Q ss_pred             CCCHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhHHHHHHHH
Q 044788          353 HTPWVGIFISTLIALTVSY--------MDFTNIISCVNFLYSLGMLLEFASFLWLRKKLPATKRPFRVPMEMLGLIFMCI  424 (483)
Q Consensus       353 ~~P~~ai~~~~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  424 (483)
                      ++|++++++..+++.++.+        ..++.+.++.++...+.|.+.+++++++|+|+| .+   |.|..+    ++..
T Consensus       321 ~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---r~~~~~----~~~~  392 (445)
T 3l1l_A          321 GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---ARPAYL----AVTT  392 (445)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG---GCTTTH----HHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc---ccchhH----HHHH
Confidence            9999999999987766553        237889999999999999999999999988776 22   334332    3344


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044788          425 IPSGFLVYVMVVATKMVCFVSALLTFFGIFLYFFIKLCRS  464 (483)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  464 (483)
                      ++.+++++..+..++.....+.+++++|+++|..++++++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~  432 (445)
T 3l1l_A          393 IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH  432 (445)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            5556666667777888899999999999999987765444
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.36
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.36  E-value=0.073  Score=51.20  Aligned_cols=98  Identities=11%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             chhHHHhhhhhhcc-c-ccCchhhHhhhChHHHHHHHHHHHHHHHHHHHH---HHHHhhccCCCCChHHHh-HHHHhCCh
Q 044788           45 LLPLIFLIYFEVAG-G-PYGEEPAVGAAGPLFAILGFLIFPFIWSIPEAL---VTAELATTFPGNGGYVIW-AHHAFGPF  118 (483)
Q Consensus        45 ~~~~~~~~i~~~iG-g-~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~l---~~~el~~~~p~~Gg~y~~-~~~~~g~~  118 (483)
                      ..+.+.-.+|..+| | +.-.|.-..+-|....++.+++..+++.+|...   +.++.+++-|.+  .+.. ..+..+.+
T Consensus         7 ~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~--~~~~i~~~~~~~~   84 (509)
T d2a65a1           7 RLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG--TTPAIFYLLWRNR   84 (509)
T ss_dssp             HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCC--SHHHHHHHHSCSH
T ss_pred             hHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc--HHHHHHHHhccCc
Confidence            35666777777777 3 456688777744435666666665544554443   233333333322  3333 33333344


Q ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHH
Q 044788          119 WGSLMGSWKFLSGVINLASYPILCID  144 (483)
Q Consensus       119 ~g~~~g~~~~~~~~~~~~~~~~~~~~  144 (483)
                      .....||...+........+....+.
T Consensus        85 ~~~giG~~~~~~~~~i~~yy~vi~~w  110 (509)
T d2a65a1          85 FAKILGVFGLWIPLVVAIYYVYIESW  110 (509)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555444444444443333