Citrus Sinensis ID: 044794

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
NAYTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILTPI
cccEEEEEcccccccccccccccEEccccccccHHHHHHHHHHcccEEEEEEcccccccccccccccccccccHHHHHHccEEEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEcccccccccccccEEEEcccccccHHHHHHHHHHHcHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHccccHHHHHHcccccccccEEEEccccEEEEEEcccccccccccEEEEEccccccccEEEcccEEEEEEEccccEEEEEEEcc
ccEEEEEccccccccccEEcccccEccccccccHHHHHHHHHHcccEEEEEEEcccEccccccEcccccHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEcccccccHHHcccEEEccccccccHHHHHHHHHHHHccHHHcEccEEEEccccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHccHHHHHHHccccccccEEEEEEccEEEEEEHHHcccccccEEEEEEHHccccccccEcEccEEEEEEccccEEEEEEEEc
NAYTQFLLAnglartppmghgnlraktstfpsGIKALADYVHAKglrlgiysdagfrtcsntmpgslghelqdegtfAQWGIdylkydncfhdgskpqeRYTKMSYALLKAGRPILYSIWgtkiqrnglvrnawrttgdirdkwesitsiadqnnvwgrfagpgrwndpdmlevgnggmslEEYRshfsiwplmkvsplligydirsasgetlkilgnkevivvnqdplgvprrkirskgalefpvtwreigiplpapvivRDLWRYEHSFVSMNKRYgliayvdphackmyiltpi
NAYTQFLLAnglartppmghgNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIwgtkiqrnglvrnAWRTtgdirdkwesitsiadqnnvwGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGEtlkilgnkevivvnqdplgvprrkirskgalefpvtwreigiplpapVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILTPI
NAYTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILTPI
*****FLLANGL***************STFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILT**
NAYTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILTPI
NAYTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILTPI
NAYTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILTPI
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NAYTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILTPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query297 2.2.26 [Sep-21-2011]
Q42656378 Alpha-galactosidase OS=Co N/A no 0.919 0.722 0.544 5e-84
P14749411 Alpha-galactosidase OS=Cy N/A no 0.919 0.664 0.524 4e-82
Q9FXT4417 Alpha-galactosidase OS=Or yes no 0.915 0.652 0.537 4e-82
Q55B10385 Probable alpha-galactosid yes no 0.922 0.711 0.394 2e-52
B3PGJ1404 Alpha-galactosidase A OS= yes no 0.754 0.554 0.483 2e-51
Q90744405 Alpha-N-acetylgalactosami yes no 0.747 0.548 0.443 2e-47
Q9URZ0436 Alpha-galactosidase mel1 yes no 0.690 0.470 0.428 4e-43
P51569419 Alpha-galactosidase A OS= yes no 0.811 0.575 0.398 4e-43
P17050411 Alpha-N-acetylgalactosami yes no 0.734 0.530 0.414 2e-42
P06280429 Alpha-galactosidase A OS= no no 0.734 0.508 0.409 5e-42
>sp|Q42656|AGAL_COFAR Alpha-galactosidase OS=Coffea arabica PE=1 SV=1 Back     alignment and function desciption
 Score =  311 bits (796), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 166/305 (54%), Positives = 198/305 (64%), Gaps = 32/305 (10%)

Query: 20  HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQ 79
            GNL  K STFPSGIKALADYVH+KGL+LGIYSDAG +TCS TMPGSLGHE QD  TFA 
Sbjct: 77  QGNLVPKGSTFPSGIKALADYVHSKGLKLGIYSDAGTQTCSKTMPGSLGHEEQDAKTFAS 136

Query: 80  WGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTKIQRN--GLVRNAWR 135
           WG+DYLKYDNC ++   P+ERY  MS ALL +GR I +S+  WG +        V N+WR
Sbjct: 137 WGVDYLKYDNCNNNNISPKERYPIMSKALLNSGRSIFFSLCEWGEEDPATWAKEVGNSWR 196

Query: 136 TTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMK 195
           TTGDI D W S+TS AD N+ W  +AGPG WNDPDMLEVGNGGM+  EYRSHFSIW L K
Sbjct: 197 TTGDIDDSWSSMTSRADMNDKWASYAGPGGWNDPDMLEVGNGGMTTTEYRSHFSIWALAK 256

Query: 196 VSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEF---PVT----- 247
            +PLLIG DIRS  G T ++L N EVI VNQD LGV   K+++ G LE    P++     
Sbjct: 257 -APLLIGCDIRSMDGATFQLLSNAEVIAVNQDKLGVQGNKVKTYGDLEVWAGPLSGKRVA 315

Query: 248 ----------------WREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKM 291
                           W ++G+P  A V  RDLW +       + +  + A VD H  KM
Sbjct: 316 VALWNRGSSTATITAYWSDVGLPSTAVVNARDLWAHS---TEKSVKGQISAAVDAHDSKM 372

Query: 292 YILTP 296
           Y+LTP
Sbjct: 373 YVLTP 377
Preferentially cleaves alpha-1,3 and alpha-1,4 glycoside linkages. Involved in the hydrolysis of the galactomannan, it splits alpha-linked galactose moieties. It is particularly suitable for the hydrolysis of guar gum to a gum with improved gelling properties. Can cleave terminal alpha-1,3-linked galactose residues responsible for blood group B specificity from the surface of erythrocytes thereby converting these cells serologically to group O.
Coffea arabica (taxid: 13443)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 2
>sp|P14749|AGAL_CYATE Alpha-galactosidase OS=Cyamopsis tetragonoloba PE=1 SV=1 Back     alignment and function description
>sp|Q9FXT4|AGAL_ORYSJ Alpha-galactosidase OS=Oryza sativa subsp. japonica GN=Os10g0493600 PE=1 SV=1 Back     alignment and function description
>sp|Q55B10|AGAL_DICDI Probable alpha-galactosidase OS=Dictyostelium discoideum GN=melA PE=3 SV=1 Back     alignment and function description
>sp|B3PGJ1|AGAL_CELJU Alpha-galactosidase A OS=Cellvibrio japonicus (strain Ueda107) GN=agaA PE=1 SV=1 Back     alignment and function description
>sp|Q90744|NAGAB_CHICK Alpha-N-acetylgalactosaminidase OS=Gallus gallus GN=NAGA PE=1 SV=1 Back     alignment and function description
>sp|Q9URZ0|AGAL_SCHPO Alpha-galactosidase mel1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mel1 PE=3 SV=1 Back     alignment and function description
>sp|P51569|AGAL_MOUSE Alpha-galactosidase A OS=Mus musculus GN=Gla PE=1 SV=1 Back     alignment and function description
>sp|P17050|NAGAB_HUMAN Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN=NAGA PE=1 SV=2 Back     alignment and function description
>sp|P06280|AGAL_HUMAN Alpha-galactosidase A OS=Homo sapiens GN=GLA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
224078914379 predicted protein [Populus trichocarpa] 0.973 0.762 0.609 1e-114
255555949 403 alpha-galactosidase/alpha-n-acetylgalact 0.983 0.724 0.588 1e-113
359496639 404 PREDICTED: alpha-galactosidase-like [Vit 0.973 0.715 0.589 1e-111
116788561396 unknown [Picea sitchensis] 0.925 0.694 0.607 1e-93
294464392396 unknown [Picea sitchensis] 0.898 0.674 0.580 3e-90
449530772 414 PREDICTED: alpha-galactosidase-like [Cuc 0.912 0.654 0.562 6e-88
449458718 421 PREDICTED: alpha-galactosidase-like [Cuc 0.912 0.643 0.562 8e-88
224118658367 predicted protein [Populus trichocarpa] 0.976 0.790 0.534 7e-87
297742706 406 unnamed protein product [Vitis vinifera] 0.905 0.662 0.570 1e-86
225463811368 PREDICTED: alpha-galactosidase-like [Vit 0.905 0.730 0.570 2e-86
>gi|224078914|ref|XP_002305678.1| predicted protein [Populus trichocarpa] gi|222848642|gb|EEE86189.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/371 (60%), Positives = 251/371 (67%), Gaps = 82/371 (22%)

Query: 3   YTQFLLANGLARTPPMG------------------------------------------- 19
           YTQFLLANG+ARTPPMG                                           
Sbjct: 13  YTQFLLANGVARTPPMGWNSWNHFQCNIDERTIKTTADALVSTGLAALGYKYVNIDDCWG 72

Query: 20  ------HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQD 73
                  G+LRAK STFPSGIKALADYVH+KGL+LGIYSDAG  TCS  MPGSLGHE QD
Sbjct: 73  EEKRDWKGSLRAKASTFPSGIKALADYVHSKGLKLGIYSDAG--TCSKKMPGSLGHEEQD 130

Query: 74  EGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGL 129
             TFA+WG+DYLKYDNC+HDGSKPQ+RY +MSYAL K GRPILYS+  WG +   +  G 
Sbjct: 131 AKTFAEWGVDYLKYDNCYHDGSKPQDRYARMSYALRKVGRPILYSLCEWGQEYPAKWAGF 190

Query: 130 VRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFS 189
             NAWRTTGDI+D WES+ SIAD+NN+WGR+AGPGRWNDPDMLEVGNGGMSLEEYRSHFS
Sbjct: 191 YGNAWRTTGDIKDTWESVISIADENNIWGRYAGPGRWNDPDMLEVGNGGMSLEEYRSHFS 250

Query: 190 IWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEF----- 244
           IW LMK +PLLIG D++SAS ETL+ILGNKEVI VNQDPLGV  RKIR+K  LE      
Sbjct: 251 IWALMK-APLLIGCDVQSASHETLRILGNKEVIDVNQDPLGVQGRKIRAKAGLEIWAGSL 309

Query: 245 -----------------PVT--WREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVD 285
                            P+T  WREIG+    PVIVRDLW   HSFVSM K +GL AYV 
Sbjct: 310 SRKRVAVVLWNRSGSRAPITVGWREIGLSPYNPVIVRDLW--AHSFVSMRKLHGLTAYVA 367

Query: 286 PHACKMYILTP 296
            HACKMYILTP
Sbjct: 368 SHACKMYILTP 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255555949|ref|XP_002519009.1| alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative [Ricinus communis] gi|223541672|gb|EEF43220.1| alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359496639|ref|XP_002271908.2| PREDICTED: alpha-galactosidase-like [Vitis vinifera] gi|297744869|emb|CBI38328.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|116788561|gb|ABK24922.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|294464392|gb|ADE77708.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|449530772|ref|XP_004172366.1| PREDICTED: alpha-galactosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449458718|ref|XP_004147094.1| PREDICTED: alpha-galactosidase-like [Cucumis sativus] gi|86278368|gb|ABC88435.1| acid alpha galactosidase 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224118658|ref|XP_002331416.1| predicted protein [Populus trichocarpa] gi|222873630|gb|EEF10761.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297742706|emb|CBI35340.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225463811|ref|XP_002271010.1| PREDICTED: alpha-galactosidase-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
UNIPROTKB|Q9FXT4417 LOC_Os10g35110 "Alpha-galactos 0.747 0.532 0.625 8.3e-83
TAIR|locus:2150778410 AGAL1 "alpha-galactosidase 1" 0.821 0.595 0.566 8.3e-81
TAIR|locus:2150763396 AGAL2 "alpha-galactosidase 2" 0.855 0.641 0.581 1.1e-78
UNIPROTKB|Q7XIV4425 OJ1409_C08.26 "Os07g0679300 pr 0.797 0.557 0.582 4.1e-77
TAIR|locus:2078416437 AT3G56310 [Arabidopsis thalian 0.808 0.549 0.586 1.3e-70
UNIPROTKB|Q23DW6381 TTHERM_00043770 "Alpha-galacto 0.703 0.548 0.525 7.8e-62
UNIPROTKB|Q9S2C9 680 Q9S2C9 "Probable secreted alph 0.737 0.322 0.528 3.3e-61
UNIPROTKB|Q23YJ0382 TTHERM_01181990 "Melibiase fam 0.720 0.560 0.513 9.3e-59
DICTYBASE|DDB_G0271490385 melA "putative alpha-galactosi 0.744 0.574 0.473 2.4e-57
UNIPROTKB|F1NJF8405 NAGA "Alpha-N-acetylgalactosam 0.737 0.540 0.457 9.9e-52
UNIPROTKB|Q9FXT4 LOC_Os10g35110 "Alpha-galactosidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 722 (259.2 bits), Expect = 8.3e-83, Sum P(3) = 8.3e-83
 Identities = 142/227 (62%), Positives = 163/227 (71%)

Query:    21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQW 80
             GN      TFPSGIKALADYVHAKGL+LGIYSDAG +TCSN MPGSL HE QD  TFA W
Sbjct:   118 GNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASW 177

Query:    81 GIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTKIQRN--GLVRNAWRT 136
             G+DYLKYDNC   G    ERYT+MS A+   G+ I +S+  WG +      G + N+WRT
Sbjct:   178 GVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRT 237

Query:   137 TGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKV 196
             TGDI D W S+TS AD+N+ W  +AGPG WNDPDMLEVGNGGMS  EYRSHFSIW L K 
Sbjct:   238 TGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAK- 296

Query:   197 SPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALE 243
             +PLLIG D+RS S +T  IL N EVI VNQD LGV  +K++S   LE
Sbjct:   297 APLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLE 343
GO:0004557 "alpha-galactosidase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0009311 "oligosaccharide metabolic process" evidence=ISS
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0016139 "glycoside catabolic process" evidence=ISS
GO:0046477 "glycosylceramide catabolic process" evidence=ISS
TAIR|locus:2150778 AGAL1 "alpha-galactosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150763 AGAL2 "alpha-galactosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XIV4 OJ1409_C08.26 "Os07g0679300 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2078416 AT3G56310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q23DW6 TTHERM_00043770 "Alpha-galactosidase, putative" [Tetrahymena thermophila SB210 (taxid:312017)] Back     alignment and assigned GO terms
UNIPROTKB|Q9S2C9 Q9S2C9 "Probable secreted alpha-galactosidase" [Streptomyces coelicolor A3(2) (taxid:100226)] Back     alignment and assigned GO terms
UNIPROTKB|Q23YJ0 TTHERM_01181990 "Melibiase family protein" [Tetrahymena thermophila SB210 (taxid:312017)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271490 melA "putative alpha-galactosidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJF8 NAGA "Alpha-N-acetylgalactosaminidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FXT4AGAL_ORYSJ3, ., 2, ., 1, ., 2, 20.53770.91580.6522yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
PLN02808386 PLN02808, PLN02808, alpha-galactosidase 1e-130
PLN02692412 PLN02692, PLN02692, alpha-galactosidase 1e-118
PLN02229427 PLN02229, PLN02229, alpha-galactosidase 1e-112
PLN03231357 PLN03231, PLN03231, putative alpha-galactosidase; 2e-16
PLN02899 633 PLN02899, PLN02899, alpha-galactosidase 3e-14
pfam02065395 pfam02065, Melibiase, Melibiase 3e-06
>gnl|CDD|166449 PLN02808, PLN02808, alpha-galactosidase Back     alignment and domain information 
 Score =  374 bits (962), Expect = e-130
 Identities = 179/307 (58%), Positives = 209/307 (68%), Gaps = 38/307 (12%)

Query: 21  GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQW 80
           GNL  K STFPSGIKALADYVH+KGL+LGIYSDAG  TCS TMPGSLGHE QD  TFA W
Sbjct: 86  GNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASW 145

Query: 81  GIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTKIQRN-----GLVRNA 133
           GIDYLKYDNC + G+ PQERY KMS ALL +GRPI +S+  WG   Q +     G + N+
Sbjct: 146 GIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWG---QEDPATWAGDIGNS 202

Query: 134 WRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPL 193
           WRTTGDI+D W+S+TS ADQN+ W  +A PG WNDPDMLEVGNGGM+ EEYRSHFSIW L
Sbjct: 203 WRTTGDIQDNWDSMTSRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWAL 262

Query: 194 MKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEF---PVT--- 247
            K +PLLIG DIRS   ET ++L NKEVI VNQD LGV  +K++  G LE    P++   
Sbjct: 263 AK-APLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKKDGDLEVWAGPLSKKR 321

Query: 248 ------------------WREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHAC 289
                             W +IG+   A V  RDLW   HS  S + +  L A V+ HAC
Sbjct: 322 VAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLW--AHSTQS-SVKGQLSALVESHAC 378

Query: 290 KMYILTP 296
           KMY+LTP
Sbjct: 379 KMYVLTP 385

Length = 386
>gnl|CDD|178295 PLN02692, PLN02692, alpha-galactosidase Back     alignment and domain information
>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase Back     alignment and domain information
>gnl|CDD|178770 PLN03231, PLN03231, putative alpha-galactosidase; Provisional Back     alignment and domain information
>gnl|CDD|178487 PLN02899, PLN02899, alpha-galactosidase Back     alignment and domain information
>gnl|CDD|216861 pfam02065, Melibiase, Melibiase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 297
PLN02808386 alpha-galactosidase 100.0
PLN02229427 alpha-galactosidase 100.0
PLN02692412 alpha-galactosidase 100.0
KOG2366414 consensus Alpha-D-galactosidase (melibiase) [Carbo 100.0
PLN03231357 putative alpha-galactosidase; Provisional 100.0
PLN02899 633 alpha-galactosidase 100.0
PF02065394 Melibiase: Melibiase; InterPro: IPR000111 O-Glycos 99.86
COG3345687 GalA Alpha-galactosidase [Carbohydrate transport a 99.15
PLN02219 775 probable galactinol--sucrose galactosyltransferase 99.1
cd06593308 GH31_xylosidase_YicI YicI alpha-xylosidase is a gl 99.03
cd06592303 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact 98.96
PLN02711 777 Probable galactinol--sucrose galactosyltransferase 98.85
PLN02355 758 probable galactinol--sucrose galactosyltransferase 98.85
PF05691 747 Raffinose_syn: Raffinose synthase or seed imbibiti 98.85
PLN02684 750 Probable galactinol--sucrose galactosyltransferase 98.79
cd06589265 GH31 The enzymes of glycosyl hydrolase family 31 ( 98.67
PF01055441 Glyco_hydro_31: Glycosyl hydrolases family 31 ; In 98.62
cd06598317 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide 98.6
cd06604339 GH31_glucosidase_II_MalA Alpha-glucosidase II (alp 98.4
cd06595292 GH31_xylosidase_XylS-like This family represents a 98.36
cd06599317 GH31_glycosidase_Aec37 Glycosyl hydrolase family 3 98.35
cd06600317 GH31_MGAM-like This family includes the following 98.24
cd06591319 GH31_xylosidase_XylS XylS is a glycosyl hydrolase 98.19
cd06601332 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) 98.12
PRK10658665 putative alpha-glucosidase; Provisional 98.06
cd06594317 GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl 98.03
cd06602339 GH31_MGAM_SI_GAA This family includes the followin 98.02
cd06603339 GH31_GANC_GANAB_alpha This family includes the clo 97.8
cd06597340 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide 97.75
COG1501 772 Alpha-glucosidases, family 31 of glycosyl hydrolas 97.72
PRK10426635 alpha-glucosidase; Provisional 97.54
PLN02763 978 hydrolase, hydrolyzing O-glycosyl compounds 97.47
PLN02982 865 galactinol-raffinose galactosyltransferase/ghydrol 96.99
PF10566273 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: 96.57
cd06596261 GH31_CPE1046 CPE1046 is an uncharacterized Clostri 96.51
PF01120346 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00 91.34
KOG2366 414 consensus Alpha-D-galactosidase (melibiase) [Carbo 90.95
smart00812384 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro 81.8
>PLN02808 alpha-galactosidase Back     alignment and domain information 
Probab=100.00  E-value=3.8e-95  Score=693.70  Aligned_cols=290  Identities=62%  Similarity=1.052  Sum_probs=276.2

Q ss_pred             ccceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCc
Q 044794            3 YTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGI   82 (297)
Q Consensus         3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGv   82 (297)
                      |.+|+|||||+...+..+|+|+||++|||+|||+|+||||+||||||||+++|+.||.+++|||++||++|+++||+|||
T Consensus        68 y~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGv  147 (386)
T PLN02808         68 YKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGI  147 (386)
T ss_pred             CEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCC
Confidence            77899999999877888999999999999999999999999999999999999999988779999999999999999999


Q ss_pred             cEEEeeCCCCCCCChHHHHHHHHHHHHHcCCCeEEec--CCcc--hhhhcccccEEEecCCCCCChhhHHHHHHhccccc
Q 044794           83 DYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWG  158 (297)
Q Consensus        83 DylK~D~c~~~~~~~~~~y~~m~~al~~~gr~i~~s~--wg~~--~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~  158 (297)
                      ||||||+|+.++.+.+++|.+|++||+++||||+||+  ||..  +.|.+++||+||++.||++.|.++.++++.+..++
T Consensus       148 DylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~  227 (386)
T PLN02808        148 DYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWA  227 (386)
T ss_pred             CEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhH
Confidence            9999999998777788999999999999999999996  9975  78999999999999999999999999999999999


Q ss_pred             cccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCCCCCCcEEEee
Q 044794          159 RFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRS  238 (297)
Q Consensus       159 ~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~lG~~~~~v~~  238 (297)
                      .+++||+|||||||+||+++||.+|+|||||||||++ ||||||+||++|++++++||+||||||||||++|+|+++|..
T Consensus       228 ~~agPG~wnDpDML~vGn~glt~~E~rthfsLWam~~-SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~  306 (386)
T PLN02808        228 SYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWALAK-APLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKK  306 (386)
T ss_pred             hhcCCCCCCCCCeeeECCCCCCHHHHHHHHHHHHHHh-CcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEe
Confidence            9999999999999999999999999999999999999 999999999999999999999999999999999999999987


Q ss_pred             CCCEEE------------------------EEEecccCCCCCCceEEEeccccCCceeeeeeceeEEEEECCCcEEEEEE
Q 044794          239 KGALEF------------------------PVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYIL  294 (297)
Q Consensus       239 ~~~~~V------------------------~i~~~~lGl~~~~~~~v~DlW~~~~~~~g~~~~~~~~~~l~~h~~~~~rl  294 (297)
                      +++.+|                        +++|++|||.....++|||||  +|+++| .++++++++|+||+|+||||
T Consensus       307 ~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlW--s~~~~g-~~~~~~~~~v~pHg~~~~rl  383 (386)
T PLN02808        307 DGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLW--AHSTQS-SVKGQLSALVESHACKMYVL  383 (386)
T ss_pred             cCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECC--CCCccC-cccceEEEEECCceEEEEEE
Confidence            665443                        888999999876789999999  999998 88899999999999999999


Q ss_pred             Ee
Q 044794          295 TP  296 (297)
Q Consensus       295 ~~  296 (297)
                      +|
T Consensus       384 t~  385 (386)
T PLN02808        384 TP  385 (386)
T ss_pred             eC
Confidence            97

>PLN02229 alpha-galactosidase Back     alignment and domain information
>PLN02692 alpha-galactosidase Back     alignment and domain information
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03231 putative alpha-galactosidase; Provisional Back     alignment and domain information
>PLN02899 alpha-galactosidase Back     alignment and domain information
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02219 probable galactinol--sucrose galactosyltransferase 2 Back     alignment and domain information
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose Back     alignment and domain information
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase Back     alignment and domain information
>PLN02711 Probable galactinol--sucrose galactosyltransferase Back     alignment and domain information
>PLN02355 probable galactinol--sucrose galactosyltransferase 1 Back     alignment and domain information
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins Back     alignment and domain information
>PLN02684 Probable galactinol--sucrose galactosyltransferase Back     alignment and domain information
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase Back     alignment and domain information
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY Back     alignment and domain information
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities Back     alignment and domain information
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus Back     alignment and domain information
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37 Back     alignment and domain information
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II Back     alignment and domain information
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate Back     alignment and domain information
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end Back     alignment and domain information
>PRK10658 putative alpha-glucosidase; Provisional Back     alignment and domain information
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride Back     alignment and domain information
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase Back     alignment and domain information
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB) Back     alignment and domain information
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ Back     alignment and domain information
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10426 alpha-glucosidase; Provisional Back     alignment and domain information
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain Back     alignment and domain information
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00812 Alpha_L_fucos Alpha-L-fucosidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
1uas_A362 Crystal Structure Of Rice Alpha-Galactosidase Lengt 5e-83
1ktb_A405 The Structure Of Alpha-N-Acetylgalactosaminidase Le 4e-49
3a5v_A397 Crystal Structure Of Alpha-Galactosidase I From Mor 4e-44
3h53_A400 Crystal Structure Of Human Alpha-N-Acetylgalactosam 6e-44
1r46_A398 Structure Of Human Alpha-galactosidase Length = 398 3e-43
3lx9_A404 Interconversion Of Human Lysosomal Enzyme Specifici 3e-43
3hg3_A404 Human Alpha-Galactosidase Catalytic Mechanism 2. Su 2e-42
3lrk_A479 Structure Of Alfa-Galactosidase (Mel1) From Sacchar 1e-35
3lrm_A479 Structure Of Alfa-Galactosidase From Saccharomyces 1e-34
1szn_A417 The Structure Of Alpha-Galactosidase Length = 417 1e-33
3a21_A 614 Crystal Structure Of Streptomyces Avermitilis Beta- 7e-30
3cc1_A433 Crystal Structure Of A Putative Alpha-N-Acetylgalac 3e-10
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase Length = 362 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (777), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 164/305 (53%), Positives = 193/305 (63%), Gaps = 33/305 (10%)
Query: 20  HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQ 79
            GN      TFPSGIKALADYVHAKGL+LGIYSDAG +TCSN MPGSL HE QD  TFA 
Sbjct: 62  QGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFAS 121
Query: 80  WGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGLVRNAWR 135
           WG+DYLKYDNC   G    ERYT+MS A+   G+ I +S+  WG +      G + N+WR
Sbjct: 122 WGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWR 181
Query: 136 TTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMK 195
           TTGDI D W S+TS AD+N+ W  +AGPG WNDPDMLEVGNGGMS  EYRSHFSIW L K
Sbjct: 182 TTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAK 241
Query: 196 VSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEF---PVT----- 247
            +PLLIG D+RS S +T  IL N EVI VNQD LGV  +K++S   LE    P++     
Sbjct: 242 -APLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKA 300
Query: 248 ----------------WREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKM 291
                           W  IG+     V  RDLW +  SF +  +   + A V PH CKM
Sbjct: 301 VVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHS-SFAAQGQ---ISASVAPHDCKM 356
Query: 292 YILTP 296
           Y+LTP
Sbjct: 357 YVLTP 361
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase Length = 405 Back     alignment and structure
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea Length = 397 Back     alignment and structure
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase Length = 400 Back     alignment and structure
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase Length = 398 Back     alignment and structure
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities Length = 404 Back     alignment and structure
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate Bound Length = 404 Back     alignment and structure
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces Cerevisiae Length = 479 Back     alignment and structure
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces Cerevisiae With Raffinose Length = 479 Back     alignment and structure
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase Length = 417 Back     alignment and structure
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L- Arabinopyranosidase Length = 614 Back     alignment and structure
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus Halodurans C-125 At 2.00 A Resolution Length = 433 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
3a21_A 614 Putative secreted alpha-galactosidase; beta-alpha- 8e-86
1uas_A362 Alpha-galactosidase; TIM-barrel, beta-alpha-barrel 1e-81
1ktb_A405 Alpha-N-acetylgalactosaminidase; glycoprotein, (be 2e-75
3a5v_A397 Alpha-galactosidase; beta/alpha barrel, N-glycosyl 2e-74
1szn_A417 Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma 2e-72
3hg3_A404 Alpha-galactosidase A; glycoprotein, carbohydrate- 3e-72
3lrk_A479 Alpha-galactosidase 1; tetramer, GH27, glycoprotei 2e-71
3cc1_A433 BH1870 protein, putative alpha-N-acetylgalactosami 2e-66
2xn2_A732 Alpha-galactosidase; hydrolase, glycosidase; HET: 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1zy9_A564 Alpha-galactosidase; TM1192, struc genomics, joint 3e-05
3mi6_A745 Alpha-galactosidase; NESG, structural genomics, PS 6e-05
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A* Length = 614 Back     alignment and structure
 Score =  268 bits (685), Expect = 8e-86
 Identities = 86/305 (28%), Positives = 122/305 (40%), Gaps = 73/305 (23%)

Query: 8   LANGLARTPPMG------------------------------------------------ 19
                  + PMG                                                
Sbjct: 4   TRQITVPSAPMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRD 63

Query: 20  -HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCS---------NTMPGSLGH 69
             GN+   T+ +P G+ A+  Y+H+KGL+ GIY+DAG   C              GS GH
Sbjct: 64  SAGNITVDTAEWPGGMSAITAYIHSKGLKAGIYTDAGKDGCGYYYPTGRPAAPGSGSEGH 123

Query: 70  ELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYALLKA----GRPILYSI--WG 121
             QD   F+ WG D++K D C  D         Y  +S A+ +A    GRP+  SI  WG
Sbjct: 124 YDQDMLQFSTWGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWG 183

Query: 122 TKIQRNGLVR--NAWRTTGDIR--DKWESITSIADQ--NNVWGRFAGPGRWNDPDMLEVG 175
            +   N        WRT+ DI       S+TS+       +       G +NDPDML VG
Sbjct: 184 YQNPWNWAAGQAPLWRTSTDIIYYGNQPSMTSLLSNFDQTLHPTAQHTGYYNDPDMLMVG 243

Query: 176 NGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRK 235
             G +  + R+H ++W +   +PLL G D+ + + ET  IL N EVI V+QD  G+   K
Sbjct: 244 MDGFTAAQNRTHMNLWAISG-APLLAGNDLTTMTSETAGILKNPEVIAVDQDSRGLQGVK 302

Query: 236 IRSKG 240
           +    
Sbjct: 303 VAEDT 307
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 Length = 362 Back     alignment and structure
>1ktb_A Alpha-N-acetylgalactosaminidase; glycoprotein, (beta/alpha)8 barrel, hydrolase; HET: NAG; 1.90A {Gallus gallus} SCOP: b.71.1.1 c.1.8.1 PDB: 1ktc_A* 3h55_A* 3h54_A* 3h53_A* 3igu_A* Length = 405 Back     alignment and structure
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea} Length = 397 Back     alignment and structure
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* Length = 417 Back     alignment and structure
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A* Length = 404 Back     alignment and structure
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A* Length = 479 Back     alignment and structure
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} Length = 433 Back     alignment and structure
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* Length = 732 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 Length = 564 Back     alignment and structure
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} Length = 745 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
3hg3_A404 Alpha-galactosidase A; glycoprotein, carbohydrate- 100.0
3lrk_A479 Alpha-galactosidase 1; tetramer, GH27, glycoprotei 100.0
3a5v_A397 Alpha-galactosidase; beta/alpha barrel, N-glycosyl 100.0
4do4_A400 Alpha-N-acetylgalactosaminidase; pharmacological c 100.0
1szn_A417 Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma 100.0
1uas_A362 Alpha-galactosidase; TIM-barrel, beta-alpha-barrel 100.0
3cc1_A433 BH1870 protein, putative alpha-N-acetylgalactosami 100.0
3a21_A 614 Putative secreted alpha-galactosidase; beta-alpha- 100.0
1zy9_A564 Alpha-galactosidase; TM1192, struc genomics, joint 100.0
4fnq_A729 Alpha-galactosidase AGAB; glycoside hydrolase, hyd 100.0
2xn2_A732 Alpha-galactosidase; hydrolase, glycosidase; HET: 99.98
2yfo_A720 Alpha-galactosidase-sucrose kinase agask; hydrolas 99.89
3mi6_A745 Alpha-galactosidase; NESG, structural genomics, PS 99.61
3a24_A641 Alpha-galactosidase; glycoside hydrolase family 97 99.39
2f2h_A 773 Putative family 31 glucosidase YICI; BETA8alpha8 b 98.81
2g3m_A 693 Maltase, alpha-glucosidase; hydrolase, glycoside h 98.79
4ba0_A 817 Alpha-glucosidase, putative, ADG31B; hydrolase; HE 98.55
3nsx_A 666 Alpha-glucosidase; structural genomics, PSI-2, pro 98.28
2xvl_A 1020 Alpha-xylosidase, putative, XYL31A; hydrolase, gly 98.26
3lpp_A 898 Sucrase-isomaltase; glycoside hydrolase family 31, 98.04
3l4y_A 875 Maltase-glucoamylase, intestinal; glycoside hydrol 97.98
2d73_A738 Alpha-glucosidase SUSB; glycoside hydrolase family 97.57
3top_A 908 Maltase-glucoamylase, intestinal; membrane, hydrol 96.26
3zss_A695 Putative glucanohydrolase PEP1A; alpha-glucan bios 93.03
2x2h_A 1027 Alpha-1,4-glucan lyase isozyme 1; anhydrofructose 92.81
4do4_A 400 Alpha-N-acetylgalactosaminidase; pharmacological c 89.22
3ues_A478 Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr 82.13
3eyp_A469 Putative alpha-L-fucosidase; structural genomics, 81.34
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A* Back     alignment and structure
Probab=100.00  E-value=4.2e-90  Score=664.32  Aligned_cols=290  Identities=36%  Similarity=0.633  Sum_probs=265.4

Q ss_pred             ccceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCc
Q 044794            3 YTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGI   82 (297)
Q Consensus         3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGv   82 (297)
                      |..|+|||||+...+..+|+++||++|||+|||+|++|||++|||||||+++|+.||+++ |||++||++|+++||+|||
T Consensus        55 ~~~~~iDDgW~~~~rd~~G~~~~~~~kFP~Gl~~l~~~ih~~Glk~Giw~~~g~~tC~~~-pGs~~~~~~da~~fa~WGv  133 (404)
T 3hg3_A           55 YEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGF-PGSFGYYDIDAQTFADWGV  133 (404)
T ss_dssp             CCEEECCSSCBCSSCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEEEEEEESSSBCTTSS-BCCTTCHHHHHHHHHHHTC
T ss_pred             CeEEEECCCcCCCCCCCCCCeeeChhhcCCCHHHHHHHHHHCCCeeEEEecCCccccCCC-CccHHHHHHHHHHHHHhCC
Confidence            578999999998667778999999999999999999999999999999999999999988 9999999999999999999


Q ss_pred             cEEEeeCCCCCCCC-hHHHHHHHHHHHHHcCCCeEEec-CCcc--------hhhhcccccEEEecCCCCCChhhHHHHHH
Q 044794           83 DYLKYDNCFHDGSK-PQERYTKMSYALLKAGRPILYSI-WGTK--------IQRNGLVRNAWRTTGDIRDKWESITSIAD  152 (297)
Q Consensus        83 DylK~D~c~~~~~~-~~~~y~~m~~al~~~gr~i~~s~-wg~~--------~~~~~~~~n~wRis~Di~~~W~~i~~~~~  152 (297)
                      ||||+|+|+..... ..++|.+|++||+++||||+||| |+..        +.+..++||+|||++||.++|+++.++++
T Consensus       134 DylK~D~C~~~~~~~~~~~y~~m~~AL~~tGRpi~~sc~w~~~~~~~~~~~~~~~~~~~n~WR~~~Di~d~W~sv~~i~~  213 (404)
T 3hg3_A          134 DLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILD  213 (404)
T ss_dssp             CEEEEECCSCSCHHHHHHHHHHHHHHHHHTTCCCEEEECTGGGGTTTSCCCHHHHHHHCSEEECSCCCCSSHHHHHHHHH
T ss_pred             cEEEecCcCCCcchhHHHHHHHHHHHHHhcCCCEEEEeCCCcccccccccchHHHhhhCcEEEecCCcCcchHHHHHHHH
Confidence            99999999976544 67899999999999999999999 8642        23346899999999999999999999998


Q ss_pred             h----ccccccccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCC
Q 044794          153 Q----NNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDP  228 (297)
Q Consensus       153 ~----~~~~~~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~  228 (297)
                      .    +..|+.+++||+|||||||+||+.+||.+|+|||||||||++ ||||||+||+++++++++||+|||||||||||
T Consensus       214 ~~~~~~~~~~~~agpG~wnDpDML~vGn~glT~~E~rthfslWai~~-sPLiiG~Dl~~~~~~tl~iLtN~evIAinQD~  292 (404)
T 3hg3_A          214 WTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMA-APLFMSNDLRHISPQAKALLQDKDVIAINQDP  292 (404)
T ss_dssp             HHHHTHHHHTTTCBTTBEEECCCBCTTSSSCCHHHHHHHHHHHHHTT-CCEEECSCTTSCCHHHHHHHTCHHHHHHHTCT
T ss_pred             HHhhhhhhhHhhcCCCCcCCCcceecCCCCCCHHHHHHHHHHHHHhc-CceEecCCcccCCHHHHHHhcCHHHHhhhccc
Confidence            4    456899999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCCCcEEEeeCCCE--------------------------EEEEEecccCC---CCCCceEEEeccccCCceeeeee--c
Q 044794          229 LGVPRRKIRSKGAL--------------------------EFPVTWREIGI---PLPAPVIVRDLWRYEHSFVSMNK--R  277 (297)
Q Consensus       229 lG~~~~~v~~~~~~--------------------------~V~i~~~~lGl---~~~~~~~v~DlW~~~~~~~g~~~--~  277 (297)
                      +|+|+++|...++.                          .|+++|++|||   ..+..++|||||  +|+++| ++  +
T Consensus       293 lG~q~~~v~~~~~~~VW~~~l~~g~~aValfN~~~~~~~~~vtv~~~~lGl~~~~~~~~~~vrDLW--~~~~lg-~~~~~  369 (404)
T 3hg3_A          293 LGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLP--VKRKLG-FYEWT  369 (404)
T ss_dssp             TCCCCEEEEEETTEEEEEEECSTTCEEEEEEECCCSSSCEEEEEEGGGSGGGTTTSSEEEEEEEES--SCEEEE-EEETT
T ss_pred             cCCcceEEEecCCeEEEEEECCCCCEEEEEEEcCCCCCceEEEEEHHHcCCcccCCCCceEEEECC--CCcccc-ccccc
Confidence            99999999854432                          34889999999   545789999999  999998 54  3


Q ss_pred             eeEEEEECCCcEEEEEEEeC
Q 044794          278 YGLIAYVDPHACKMYILTPI  297 (297)
Q Consensus       278 ~~~~~~l~~h~~~~~rl~~~  297 (297)
                      ++|+++|+||+|+||||+|.
T Consensus       370 ~~~~~~V~pHg~~llrlt~~  389 (404)
T 3hg3_A          370 SRLRSHINPTGTVLLQLENT  389 (404)
T ss_dssp             CEEEEEECTTCEEEEEEEEH
T ss_pred             ceEEEEECCCeEEEEEEEcC
Confidence            78999999999999999973
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A* Back     alignment and structure
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea} Back     alignment and structure
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A* Back     alignment and structure
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* Back     alignment and structure
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 Back     alignment and structure
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} Back     alignment and structure
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A* Back     alignment and structure
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 Back     alignment and structure
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* Back     alignment and structure
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* Back     alignment and structure
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* Back     alignment and structure
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} Back     alignment and structure
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A* Back     alignment and structure
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* Back     alignment and structure
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A* Back     alignment and structure
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A* Back     alignment and structure
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A* Back     alignment and structure
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A* Back     alignment and structure
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A* Back     alignment and structure
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Back     alignment and structure
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A* Back     alignment and structure
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Back     alignment and structure
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A* Back     alignment and structure
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A* Back     alignment and structure
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* Back     alignment and structure
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 297
d1ktba2293 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallu 4e-59
d1uasa2273 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [ 4e-58
d1r46a2292 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) 5e-58
d1szna2314 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [T 3e-45
d1zy9a2348 c.1.8.13 (A:178-525) Alpha-galactosidase GalA cata 7e-28
d1uasa189 b.71.1.1 (A:274-362) Melibiase {Rice (Oryza sativa 4e-09
d1ktba195 b.71.1.1 (A:294-388) Melibiase {Chicken (Gallus ga 1e-07
d1szna1103 b.71.1.1 (A:315-417) Melibiase {Trichoderma reesei 4e-05
>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 293 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  188 bits (479), Expect = 4e-59
 Identities = 99/224 (44%), Positives = 128/224 (57%), Gaps = 15/224 (6%)

Query: 19  GHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFA 78
             G L      FP GIKALADYVHA+GL+LGIY D G  TC      +L    QD  TFA
Sbjct: 71  AEGRLVPDPERFPRGIKALADYVHARGLKLGIYGDLGRLTCGGYPGTTLDRVEQDAQTFA 130

Query: 79  QWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSIWGTKIQRN----------G 128
           +WG+D LK D C+  G +  + Y +M+ AL   GRPI+YS      Q            G
Sbjct: 131 EWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYSCSWPAYQGGLPPKVNYTLLG 190

Query: 129 LVRNAWRTTGDIRDKWESITSIADQ----NNVWGRFAGPGRWNDPDMLEVGNGGMSLEEY 184
            + N WR   DI+D W+S+ SI D      +V   FAGPG WNDPDML +GN G+S E+ 
Sbjct: 191 EICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDMLIIGNFGLSYEQS 250

Query: 185 RSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDP 228
           RS  ++W +M  +PLL+  D+R+ S    KIL N+ +I +NQDP
Sbjct: 251 RSQMALWTIMA-APLLMSTDLRTISPSAKKILQNRLMIQINQDP 293
>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Length = 273 Back     information, alignment and structure
>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Length = 292 Back     information, alignment and structure
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]} Length = 314 Back     information, alignment and structure
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 348 Back     information, alignment and structure
>d1uasa1 b.71.1.1 (A:274-362) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Length = 89 Back     information, alignment and structure
>d1ktba1 b.71.1.1 (A:294-388) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 95 Back     information, alignment and structure
>d1szna1 b.71.1.1 (A:315-417) Melibiase {Trichoderma reesei [TaxId: 51453]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
d1uasa2273 Melibiase {Rice (Oryza sativa) [TaxId: 4530]} 100.0
d1r46a2292 Melibiase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ktba2293 Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d1szna2314 Melibiase {Trichoderma reesei [TaxId: 51453]} 100.0
d1zy9a2348 Alpha-galactosidase GalA catalytic domain {Thermot 100.0
d1uasa189 Melibiase {Rice (Oryza sativa) [TaxId: 4530]} 99.51
d1ktba195 Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} 99.38
d1r46a198 Melibiase {Human (Homo sapiens) [TaxId: 9606]} 99.29
d1szna1103 Melibiase {Trichoderma reesei [TaxId: 51453]} 99.02
d2f2ha4338 Putative glucosidase YicI, domain 2 {Escherichia c 98.9
d1ji1a283 Maltogenic amylase {Thermoactinomyces vulgaris, TV 95.72
d1ea9c280 Maltogenic amylase {Bacillus sp., cyclomaltodextri 87.26
d1uasa2273 Melibiase {Rice (Oryza sativa) [TaxId: 4530]} 83.82
d1wzla283 Maltogenic amylase {Thermoactinomyces vulgaris, TV 82.28
d1hl9a2350 Putative alpha-L-fucosidase, catalytic domain {The 82.22
d1to3a_291 Putative aldolase YihT {Salmonella typhimurium [Ta 81.24
d1j0ha283 Neopullulanase {Bacillus stearothermophilus [TaxId 80.17
d1r46a2292 Melibiase {Human (Homo sapiens) [TaxId: 9606]} 80.05
>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=3.9e-59  Score=425.84  Aligned_cols=225  Identities=61%  Similarity=1.029  Sum_probs=213.4

Q ss_pred             ccceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCc
Q 044794            3 YTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGI   82 (297)
Q Consensus         3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGv   82 (297)
                      |..|+|||||+.......|+++||++|||+|||+|++++|++|||||||..|+...|.+.+|+++.|++.++++|++|||
T Consensus        45 ~~~~~iDdGW~~~~~d~~g~~~~~~~~fP~Gl~~~~~~~~~~G~~~Glw~~~~~~~~~~~~~~~~~~~~~d~~~~~~wGv  124 (273)
T d1uasa2          45 YQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGV  124 (273)
T ss_dssp             CCEEECCSSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEEEEEEESSSBCTTSSSBCCTTCHHHHHHHHHHHTC
T ss_pred             CeEEEEcCCcCCCCCCCCCCcccCccccCCChHHHHHHHHhCCCeEEEecCCcccccCCCCCcchhhHHHHHHHHHhCCC
Confidence            46799999999877777999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             cEEEeeCCCCCCCChHHHHHHHHHHHHHcCCCeEEec--CCcc--hhhhcccccEEEecCCCCCChhhHHHHHHhccccc
Q 044794           83 DYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWG  158 (297)
Q Consensus        83 DylK~D~c~~~~~~~~~~y~~m~~al~~~gr~i~~s~--wg~~--~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~  158 (297)
                      ||||+|+|.....+..++|.++.++|++++|++++++  +|..  ..+...++|+||+++|+.+.|+++..+++.+..++
T Consensus       125 d~vK~D~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~R~s~D~~~~w~~~~~~~~~~~~~~  204 (273)
T d1uasa2         125 DYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWA  204 (273)
T ss_dssp             CEEEEECCCCTTCCHHHHHHHHHHHHHHHCTTSEEEEESTTTTCGGGTGGGTCSEEECSSCCCSSHHHHHHHHHHHHTTG
T ss_pred             ceeccccccccchHHHHHHHHHHHHHHHhCCCcEEeecccCCCcchhhhhhhhhhhcccCCcCcchhhHHHHHHHHHHHH
Confidence            9999999998888889999999999999999999887  5543  55667899999999999999999999999988899


Q ss_pred             cccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCC
Q 044794          159 RFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDP  228 (297)
Q Consensus       159 ~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~  228 (297)
                      .+.++++||||||+++|+.++|.+|+||||++|||++ |||++|+||++++++.+++|+|+|+||||||+
T Consensus       205 ~~~g~~~~~D~D~~~~~~~~~t~~E~rt~~al~~i~~-~pL~i~~Dl~~l~~~~l~ll~N~e~IAinqd~  273 (273)
T d1uasa2         205 AYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAK-APLLIGCDVRSMSQQTKNILSNSEVIAVNQDS  273 (273)
T ss_dssp             GGCBTTBEEECCCCCTTSSSSCHHHHHHHHHHHHHTT-CCEEECSCTTSCCHHHHHHHTCHHHHHHHTCT
T ss_pred             HHhCCCcccCccccccCCCCCCHHHHHHHHHHHHHHh-chhhhcCCcccCCHHHHHHhcCHHHHhhccCC
Confidence            9999999999999999999999999999999999999 99999999999999999999999999999994
>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uasa1 b.71.1.1 (A:274-362) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1ktba1 b.71.1.1 (A:294-388) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1r46a1 b.71.1.1 (A:324-421) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szna1 b.71.1.1 (A:315-417) Melibiase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Back     information, alignment and structure
>d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Back     information, alignment and structure
>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Back     information, alignment and structure
>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure