Citrus Sinensis ID: 044795

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MVTATTKLLLSDLASTVKSVLSNYIRPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA
ccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccc
cccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEcccHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHccc
MVTATTKLLLSDLASTVKSVLSnyirpisdrpnlteigqacqhdgffqvknhgipetIINNMLSISRAFFKLLESErlksysddpskskrlsiSFNINTEKEVVAEYCTSVrgdyidkalgkhgqhmalnycppcpqpeltyglpghtdpnlITVLLqddvpglqvlrngkwlpvspipntfiVNISDQMQVLSNDLYKSVLHWALVNcdkegisiptfycpspdaviapakdliderhLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA
mvtattklllsdLASTVKSVLSNYIRPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERlksysddpskskrlsisfnintekeVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA
MVTATTKLLLSDLASTVKSVLSNYIRPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA
*******LLLSDLASTVKSVLSNYIRPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLE******************ISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLF*****
*****TK***SDLASTVKSVL**YIR*ISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERL*******SKSKRLSISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKAS**
MVTATTKLLLSDLASTVKSVLSNYIRPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESER***********KRLSISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA
****TTKLLLSDLASTVKSVLSNYIRPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGC**LF*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVTATTKLLLSDLASTVKSVLSNYIRPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
D4N501364 Probable 2-oxoglutarate/F N/A no 0.883 0.664 0.316 7e-35
Q39110377 Gibberellin 20 oxidase 1 no no 0.802 0.583 0.317 2e-32
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.883 0.670 0.300 4e-32
D4N500364 Thebaine 6-O-demethylase N/A no 0.883 0.664 0.306 2e-31
Q7XZQ8365 Flavone synthase OS=Petro N/A no 0.810 0.608 0.327 1e-30
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.843 0.639 0.311 1e-30
Q39224358 Protein SRG1 OS=Arabidops no no 0.532 0.407 0.414 2e-30
Q0WPW4307 1-aminocyclopropane-1-car no no 0.802 0.716 0.323 3e-30
Q05965357 Naringenin,2-oxoglutarate N/A no 0.813 0.624 0.309 5e-30
Q9S818358 Naringenin,2-oxoglutarate no no 0.813 0.622 0.32 6e-30
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function desciption
 Score =  147 bits (371), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 150/294 (51%), Gaps = 52/294 (17%)

Query: 26  RPISDRPNLTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDD- 84
            P++++  L  +  AC+  GFFQV NHG+  ++++N+ S  + FF L  +E++K    D 
Sbjct: 67  EPVTEKLELDRLHSACKEWGFFQVVNHGVDTSLVDNVKSDIQGFFNLSMNEKIKYGQKDG 126

Query: 85  ----------PSKSKRLSIS--FNINT-----------------EKEVVAEYCTSVRG-- 113
                      S+ + L  +  F I T                  +E +  Y + ++   
Sbjct: 127 DVEGFGQAFVASEDQTLDWADIFMILTLPLHLRKPHLFSKLPLPLRETIESYSSEMKKLS 186

Query: 114 ----DYIDKALGKHG--------------QHMALNYCPPCPQPELTYGLPGHTDPNLITV 155
               + ++KAL                  Q M +NY PPCPQPEL  GL  H+D   +T+
Sbjct: 187 MVLFEKMEKALQVQAVEIKEISEVFKDMTQVMRMNYYPPCPQPELAIGLTPHSDFGGLTI 246

Query: 156 LLQ-DDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGI 214
           LLQ ++V GLQ+   G+W+ V P+PN F+VN+ D +++++N +Y+SV H A+VN  KE +
Sbjct: 247 LLQLNEVEGLQIKNEGRWISVKPLPNAFVVNVGDVLEIMTNGMYRSVDHRAVVNSTKERL 306

Query: 215 SIPTFYCPSPDAVIAPAKDLIDERHLA-FYTNFTYAEYYQKFWNRGLAAEGCLD 267
           SI TF+ P+ ++ I P   LI     A F +  TY E  ++F +R L  +  LD
Sbjct: 307 SIATFHDPNLESEIGPISSLITPNTPALFRSGSTYGELVEEFHSRKLDGKSFLD 360
Non-heme dioxygenase active on an unknown substrate. No activity with (S)-reticuline, salutaridine, papaverine, (S)-corytuberine, oripavine, (S)-scoulerine, pavine, noscapine, codeine or thebaine.
Papaver somniferum (taxid: 3469)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|Q0WPW4|ACCO5_ARATH 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1 Back     alignment and function description
>sp|Q05965|FL3H_MATIN Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1 Back     alignment and function description
>sp|Q9S818|FL3H_ARATH Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
224115488350 predicted protein [Populus trichocarpa] 0.989 0.774 0.598 1e-108
224061517349 predicted protein [Populus trichocarpa] 0.992 0.779 0.582 1e-106
255555819346 1-aminocyclopropane-1-carboxylate oxidas 0.989 0.783 0.582 1e-105
225426516348 PREDICTED: naringenin,2-oxoglutarate 3-d 0.992 0.781 0.563 1e-103
225426514348 PREDICTED: naringenin,2-oxoglutarate 3-d 1.0 0.787 0.554 1e-101
356559589345 PREDICTED: flavonol synthase/flavanone 3 0.978 0.776 0.555 1e-100
225453648344 PREDICTED: hyoscyamine 6-dioxygenase [Vi 0.974 0.776 0.549 1e-99
255548069344 1-aminocyclopropane-1-carboxylate oxidas 0.974 0.776 0.552 8e-98
356520211345 PREDICTED: naringenin,2-oxoglutarate 3-d 0.978 0.776 0.543 1e-97
297809269351 predicted protein [Arabidopsis lyrata su 0.992 0.774 0.520 1e-94
>gi|224115488|ref|XP_002317046.1| predicted protein [Populus trichocarpa] gi|222860111|gb|EEE97658.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/346 (59%), Positives = 236/346 (68%), Gaps = 75/346 (21%)

Query: 2   VTATTKLLLSDLAST-VKSVLSNYIRPISDRPNLT------------------------- 35
           +  T KLLL+DLAS+ VK + SN+IRPISDRPNL+                         
Sbjct: 1   MAPTAKLLLADLASSGVKQIPSNFIRPISDRPNLSDVQISDGSIPLIDLRGLDGPNHSTI 60

Query: 36  --EIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSI 93
             +IGQACQ DGFFQVKNHGIPE +I+ +L+I+R FFKL ESERLK+YSDDP+K+ RLS 
Sbjct: 61  IEQIGQACQRDGFFQVKNHGIPEEMISIILNIARQFFKLPESERLKNYSDDPTKTTRLST 120

Query: 94  SFNINTE------------------------------KEVVAEYCTSVRG---------- 113
           SFNI TE                              ++ VAEYCTSVRG          
Sbjct: 121 SFNIKTEQVSSWRDFLRLHCYPLEDYVHEWPSNPPSFRKDVAEYCTSVRGLVLRLLEAIS 180

Query: 114 -------DYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQV 166
                  DYIDK LG HGQHMA+NY PPCPQPELTYGLPGHTDPNLIT+LLQD VPGLQV
Sbjct: 181 ESLGLERDYIDKKLGGHGQHMAMNYYPPCPQPELTYGLPGHTDPNLITILLQDHVPGLQV 240

Query: 167 LRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDA 226
           LRNGKW+ V+PIPNTFIVNI DQMQVLSND YKSVLH A+VN DK+ ISIPTFYCPSPDA
Sbjct: 241 LRNGKWIAVNPIPNTFIVNIGDQMQVLSNDRYKSVLHRAVVNSDKDRISIPTFYCPSPDA 300

Query: 227 VIAPAKDLIDERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKAS 272
           VI P K+L+D+ H A Y +FTY EYY+KFWN+GL  E CLDLFK S
Sbjct: 301 VIGPPKELVDDEHPAVYRDFTYGEYYEKFWNKGLVKECCLDLFKPS 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061517|ref|XP_002300519.1| predicted protein [Populus trichocarpa] gi|222847777|gb|EEE85324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555819|ref|XP_002518945.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] gi|223541932|gb|EEF43478.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225426516|ref|XP_002278004.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Vitis vinifera] gi|297742472|emb|CBI34621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426514|ref|XP_002278024.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559589|ref|XP_003548081.1| PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|225453648|ref|XP_002267625.1| PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera] gi|296089022|emb|CBI38725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548069|ref|XP_002515091.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] gi|223545571|gb|EEF47075.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356520211|ref|XP_003528757.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297809269|ref|XP_002872518.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318355|gb|EFH48777.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.664 0.522 0.616 3.2e-87
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.624 0.489 0.630 9.6e-76
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.678 0.545 0.489 4.8e-64
TAIR|locus:2040575366 AT2G36690 [Arabidopsis thalian 0.503 0.377 0.418 6.5e-39
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.576 0.435 0.398 3e-38
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.547 0.424 0.409 1.3e-37
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.532 0.407 0.414 4.4e-36
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.671 0.505 0.346 3.1e-35
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.514 0.380 0.437 6.3e-35
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.532 0.387 0.416 1e-34
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 607 (218.7 bits), Expect = 3.2e-87, Sum P(3) = 3.2e-87
 Identities = 114/185 (61%), Positives = 140/185 (75%)

Query:    92 SISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPN 151
             S+   + T  E ++E    +  D +   +GKHGQHMA+NY P CPQPELTYGLPGH D N
Sbjct:   165 SVRALVLTLLEAISE-SLGLAKDRVSNTIGKHGQHMAINYYPRCPQPELTYGLPGHKDAN 223

Query:   152 LITVLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDK 211
             LITVLLQD+V GLQV ++GKW+ V+P+PNTFIVN+ DQMQV+SN+ YKSVLH A+VN D 
Sbjct:   224 LITVLLQDEVSGLQVFKDGKWIAVNPVPNTFIVNLGDQMQVISNEKYKSVLHRAVVNSDM 283

Query:   212 EGISIPTFYCPSPDAVIAPAKDLIDERH--LAFYTNFTYAEYYQKFWNRGLAAEGCLDLF 269
             E ISIPTFYCPS DAVI+PA++LI+E     A Y NFTYAEY++KFW+     E C+D F
Sbjct:   284 ERISIPTFYCPSEDAVISPAQELINEEEDSPAIYRNFTYAEYFEKFWDTAFDTESCIDSF 343

Query:   270 KASTA 274
             KASTA
Sbjct:   344 KASTA 348
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0019748 "secondary metabolic process" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-130
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-114
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-57
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-53
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-50
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 5e-47
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-44
PLN02704335 PLN02704, PLN02704, flavonol synthase 7e-44
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-40
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-40
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-37
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 6e-37
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-35
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-35
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 5e-35
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-34
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-30
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-30
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-26
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 5e-26
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-25
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-20
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-20
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-18
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-17
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 6e-16
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-10
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-08
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-07
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 6e-06
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 5e-04
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 0.002
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 0.004
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  373 bits (958), Expect = e-130
 Identities = 182/348 (52%), Positives = 218/348 (62%), Gaps = 76/348 (21%)

Query: 3   TATTKLLLSDLASTVKSVLSNYIRPISDRPNLTEI------------------------- 37
           +AT+KLL+SD+AS V  V SNY+RP+SDRPN++E+                         
Sbjct: 1   SATSKLLVSDIASVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIIN 60

Query: 38  --GQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISF 95
               AC   GFFQ+KNHG+PE  I  M++++R FF   ESER+K YS D  K+ RLS SF
Sbjct: 61  QFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSF 120

Query: 96  NINTEK------------------------------EVVAEYCTSVRG------------ 113
           N++ EK                              EV AEY TSVR             
Sbjct: 121 NVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISES 180

Query: 114 -----DYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLR 168
                D +   LGKHGQHMA+NY PPCPQPELTYGLPGH D NLITVLLQD+V GLQV +
Sbjct: 181 LGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEVSGLQVFK 240

Query: 169 NGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVI 228
           +GKW+ V+PIPNTFIVN+ DQMQV+SND YKSVLH A+VN DKE ISIPTFYCPS DAVI
Sbjct: 241 DGKWIAVNPIPNTFIVNLGDQMQVISNDKYKSVLHRAVVNTDKERISIPTFYCPSEDAVI 300

Query: 229 APAKDLIDERH--LAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA 274
            PA++LI+E    LA Y NFTYAEY++KFW+   A E C+D FKASTA
Sbjct: 301 GPAQELINEEEDSLAIYRNFTYAEYFEKFWDTAFATESCIDSFKASTA 348

Length = 348
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PLN02947374 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02997325 flavonol synthase 100.0
PLN02704335 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PLN03176120 flavanone-3-hydroxylase; Provisional 99.66
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.62
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.14
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.46
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.37
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 88.93
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 81.33
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=3.5e-66  Score=480.39  Aligned_cols=268  Identities=37%  Similarity=0.628  Sum_probs=229.5

Q ss_pred             chhhHHHHhcCCccccCcCCccccCCCCCCC-------------------------------CHHHHHHHhHcCceEEEE
Q 044795            2 VTATTKLLLSDLASTVKSVLSNYIRPISDRP-------------------------------NLTEIGQACQHDGFFQVK   50 (274)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~~-------------------------------~~~~l~~A~~~~Gff~l~   50 (274)
                      +.+||.++.+|+    .+||..|++|+++++                               .+++|.+||++||||||+
T Consensus        25 ~~~v~~l~~~~~----~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~  100 (374)
T PLN02947         25 QKGVKHLCDSGI----TKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVV  100 (374)
T ss_pred             ecCHHHHHhcCC----CcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEE
Confidence            467888888776    677777776643221                               225999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhCCHHHHhccCCCCCCCCcccccccCC------------------Cc-------h-----
Q 044795           51 NHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISFNI------------------NT-------E-----  100 (274)
Q Consensus        51 nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~------------------~~-------~-----  100 (274)
                      |||||.++++++++.+++||+||.|+|+++.........||+..+..                  ..       +     
T Consensus       101 nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~f  180 (374)
T PLN02947        101 NHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADL  180 (374)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHH
Confidence            99999999999999999999999999999865432234456322100                  00       0     


Q ss_pred             HHHHHHHHHHHHh--------------------hHHHHHhcCCcccceecccCCCCCCCCCCCCCCcCCCCCeeEEeeCC
Q 044795          101 KEVVAEYCTSVRG--------------------DYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDD  160 (274)
Q Consensus       101 ~~~~~~y~~~~~~--------------------~~~~~~~~~~~~~lrl~~Ypp~~~~~~~~~~~~HtD~~~lTll~qd~  160 (274)
                      ++++.+|+.+|.+                    ++|.+.+....+.+|++|||||+.++..+|+++|||+|+||||+||+
T Consensus       181 r~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~  260 (374)
T PLN02947        181 RKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDE  260 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecC
Confidence            1788999999888                    13444444556789999999999988899999999999999999999


Q ss_pred             CCceEEEECCeeeeecCCCCeEEEEechhhHHhhhccccccceeeccCCCCceeEEEEeecCCCCceEecCcCccCcCCC
Q 044795          161 VPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPAKDLIDERHL  240 (274)
Q Consensus       161 ~~GLqV~~~g~W~~V~p~~~~~vVnvGd~l~~~TnG~~~a~~HRV~~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~  240 (274)
                      ++||||+++|+|++|+|.||++|||+||+||+||||+|||+.|||+.++..+|||++||+.|+.|++|.|+++|+++++|
T Consensus       261 v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~Pl~~lv~~~~p  340 (374)
T PLN02947        261 VEGLQIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVASLHSLPFERVVGPAPELVDEQNP  340 (374)
T ss_pred             CCCeeEeECCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCcccHHHHHHHHHHccCCCCCccccccccC
Q 044795          241 AFYTNFTYAEYYQKFWNRGLAAEGCLDLFKAST  273 (274)
Q Consensus       241 ~~y~~~~~~e~~~~~~~~~~~~~~~l~~~~i~~  273 (274)
                      ++|++++++||+....++...++..|+.+||-|
T Consensus       341 ~~Y~~~~~~ey~~~~~~~~~~~~~~l~~~~~~~  373 (374)
T PLN02947        341 RRYMDTDFATFLAYLASAEGKHKNFLESRKLIT  373 (374)
T ss_pred             CcCCCCCHHHHHHHHHHhccCchhhhhhhhccC
Confidence            999999999999999999888999999999976

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
1w9y_A319 The Structure Of Acc Oxidase Length = 319 5e-27
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-23
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-23
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-21
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-11
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-07
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-04
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 1e-04
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 134/287 (46%), Gaps = 53/287 (18%)
Query: 37  IGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSY-------------SD 83
           I  AC++ GFF++ NHGIP  + + +   ++  +K    +R K               +D
Sbjct: 24  IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTD 83
Query: 84  DPSKS----KRLSISFNINTEKEVVAEYCTSVRG------------------------DY 115
              +S    K L IS NI+   ++  EY    R                          Y
Sbjct: 84  XDWESTFFLKHLPIS-NISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGY 142
Query: 116 IDKAL-GKHGQHMAL---NYCPPCPQPELTYGLPGHTDPNLITVLLQDD-VPGLQVLRNG 170
           +  A  G  G +      NY PPCP+P+L  GL  HTD   I +L QDD V GLQ+L++G
Sbjct: 143 LKNAFYGSKGPNFGTKVSNY-PPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG 201
Query: 171 KWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAP 230
           +W+ V P  ++ +VN+ DQ++V++N  YKSV H  +   D    S+ +FY P  DAVI P
Sbjct: 202 QWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYP 261
Query: 231 AKDLID---ERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA 274
           A  L++   E +   Y  F + +Y + +   GL  +     F+A  A
Sbjct: 262 APALVEKEAEENKQVYPKFVFDDYXKLY--AGLKFQAKEPRFEAXKA 306
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 4e-97
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-94
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 8e-66
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-65
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-65
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 9e-61
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  288 bits (739), Expect = 4e-97
 Identities = 78/335 (23%), Positives = 127/335 (37%), Gaps = 89/335 (26%)

Query: 15  STVKSVLSNYIRPISDRPNLT-----------------------------------EIGQ 39
           S + S+   YIRP  +  ++                                    E+ +
Sbjct: 13  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72

Query: 40  ACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRL-SISFNIN 98
           A    G   + NHGIP  ++  +      FF L   E+ K  +D  +   +        N
Sbjct: 73  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132

Query: 99  TEK-------------------------------EVVAEYCTSVRG-------------- 113
                                             E  +EY   +R               
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192

Query: 114 ---DYIDKALGKH---GQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVL 167
              D ++K +G        M +NY P CPQPEL  G+  HTD + +T +L + VPGLQ+ 
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 252

Query: 168 RNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDA- 226
             GKW+    +P++ +++I D +++LSN  YKS+LH  LVN +K  IS   F  P  D  
Sbjct: 253 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 312

Query: 227 VIAPAKDLIDERHLAFYTNFTYAEYY-QKFWNRGL 260
           V+ P  +++     A +   T+A++   K + +  
Sbjct: 313 VLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQ 347
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.85
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 87.75
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 85.1
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 80.19
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4e-65  Score=470.87  Aligned_cols=259  Identities=31%  Similarity=0.518  Sum_probs=224.9

Q ss_pred             chhhHHHHhcCCccccCcCCccccCCCC-----------------------------CC-C-----CHHHHHHHhHcCce
Q 044795            2 VTATTKLLLSDLASTVKSVLSNYIRPIS-----------------------------DR-P-----NLTEIGQACQHDGF   46 (274)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vP~~~~~~~~-----------------------------~~-~-----~~~~l~~A~~~~Gf   46 (274)
                      +++||+|+++++    .+||.+|++|.+                             .. +     .+++|.+||+++||
T Consensus         4 ~~~v~~l~~~~~----~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GF   79 (356)
T 1gp6_A            4 VERVESLAKSGI----ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGV   79 (356)
T ss_dssp             CCCHHHHHHTTC----SSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSE
T ss_pred             cccHHHHHhcCC----CCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCE
Confidence            367999998876    667777776521                             10 0     22589999999999


Q ss_pred             EEEEcCCCCHHHHHHHHHHHHHHHhCCHHHHhccCCCCC-CCCcccccccCCC-------c-------------------
Q 044795           47 FQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDP-SKSKRLSISFNIN-------T-------------------   99 (274)
Q Consensus        47 f~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~-~~~~Gy~~~~~~~-------~-------------------   99 (274)
                      |||+||||+.++++++++.+++||+||.|+|+++..... ..++||+......       +                   
T Consensus        80 F~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP  159 (356)
T 1gp6_A           80 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP  159 (356)
T ss_dssp             EEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCC
Confidence            999999999999999999999999999999999987653 4578885432100       0                   


Q ss_pred             h-----HHHHHHHHHHHHh-----------------hHHHHHhc---CCcccceecccCCCCCCCCCCCCCCcCCCCCee
Q 044795          100 E-----KEVVAEYCTSVRG-----------------DYIDKALG---KHGQHMALNYCPPCPQPELTYGLPGHTDPNLIT  154 (274)
Q Consensus       100 ~-----~~~~~~y~~~~~~-----------------~~~~~~~~---~~~~~lrl~~Ypp~~~~~~~~~~~~HtD~~~lT  154 (274)
                      +     ++.+.+|+++|.+                 ++|.+.+.   ...+.||++|||||+.++..+|+++|||+|+||
T Consensus       160 ~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lT  239 (356)
T 1gp6_A          160 KTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT  239 (356)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEE
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEE
Confidence            0     1889999999887                 67777776   366789999999999888889999999999999


Q ss_pred             EEeeCCCCceEEEECCeeeeecCCCCeEEEEechhhHHhhhccccccceeeccCCCCceeEEEEeecCCCCc-eEecCcC
Q 044795          155 VLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDA-VIAPAKD  233 (274)
Q Consensus       155 ll~qd~~~GLqV~~~g~W~~V~p~~~~~vVnvGd~l~~~TnG~~~a~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~pl~~  233 (274)
                      ||+||+++||||+++|+|++|+|.||++|||+||+||+||||+|||+.|||+.+++.+|||++||++|+.|+ +|.|+++
T Consensus       240 lL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~  319 (356)
T 1gp6_A          240 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE  319 (356)
T ss_dssp             EEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGG
T ss_pred             EEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChh
Confidence            999999999999999999999999999999999999999999999999999999889999999999999999 9999999


Q ss_pred             ccCcCCCCCCCcccHHHHHHHHHHccCCCCC
Q 044795          234 LIDERHLAFYTNFTYAEYYQKFWNRGLAAEG  264 (274)
Q Consensus       234 ~~~~~~~~~y~~~~~~e~~~~~~~~~~~~~~  264 (274)
                      |+++++|++|++++++||+..++++.++++.
T Consensus       320 ~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          320 MVSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             hcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            9998899999999999999999988776544
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 5e-48
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-46
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-37
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-21
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 9e-08
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  159 bits (403), Expect = 5e-48
 Identities = 75/284 (26%), Positives = 132/284 (46%), Gaps = 48/284 (16%)

Query: 36  EIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISF 95
            I  AC++ GFF++ NHGIP  +++ +  +++  +K    +R K      +     +   
Sbjct: 22  MIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVT 81

Query: 96  NINTE-----------------------KEVVAEYCTSVRGDY------IDKALGKH--- 123
           +++ E                       +EV+ ++   +          + + LG     
Sbjct: 82  DMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGY 141

Query: 124 -----------GQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDD-VPGLQVLRNGK 171
                           ++  PPCP+P+L  GL  HTD   I +L QDD V GLQ+L++G+
Sbjct: 142 LKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ 201

Query: 172 WLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAPA 231
           W+ V P+ ++ +VN+ DQ++V++N  YKSV+H  +   D   +S+ +FY P  DAVI PA
Sbjct: 202 WIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPA 261

Query: 232 KDLID---ERHLAFYTNFTYAEYYQKFWNRGLAA-EGCLDLFKA 271
             L++   E +   Y  F + +Y + +      A E   +  KA
Sbjct: 262 PALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKA 305
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 89.64
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.1e-64  Score=460.67  Aligned_cols=253  Identities=31%  Similarity=0.537  Sum_probs=217.8

Q ss_pred             chhhHHHHhcCCccccCcCCccccCCCCCCCC-----------------------------------HHHHHHHhHcCce
Q 044795            2 VTATTKLLLSDLASTVKSVLSNYIRPISDRPN-----------------------------------LTEIGQACQHDGF   46 (274)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~~~-----------------------------------~~~l~~A~~~~Gf   46 (274)
                      |+.||+||++|+    ++||.+|++|+++++.                                   +++|.+||+++||
T Consensus         3 ~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GF   78 (349)
T d1gp6a_           3 VERVESLAKSGI----ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGV   78 (349)
T ss_dssp             CCCHHHHHHTTC----SSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSE
T ss_pred             CcchHHHHhCCC----ccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCE
Confidence            678999999999    8999999987543211                                   1499999999999


Q ss_pred             EEEEcCCCCHHHHHHHHHHHHHHHhCCHHHHhccCCCCCC-CCcccccccCCCc--------------------------
Q 044795           47 FQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPS-KSKRLSISFNINT--------------------------   99 (274)
Q Consensus        47 f~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~-~~~Gy~~~~~~~~--------------------------   99 (274)
                      |||+||||+.++++++++++++||+||.|+|+++...... .+.||+.......                          
T Consensus        79 f~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp  158 (349)
T d1gp6a_          79 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP  158 (349)
T ss_dssp             EEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccc
Confidence            9999999999999999999999999999999999875432 2344432211000                          


Q ss_pred             -----hHHHHHHHHHHHHh-----------------hHHHHHhc---CCcccceecccCCCCCCCCCCCCCCcCCCCCee
Q 044795          100 -----EKEVVAEYCTSVRG-----------------DYIDKALG---KHGQHMALNYCPPCPQPELTYGLPGHTDPNLIT  154 (274)
Q Consensus       100 -----~~~~~~~y~~~~~~-----------------~~~~~~~~---~~~~~lrl~~Ypp~~~~~~~~~~~~HtD~~~lT  154 (274)
                           -.+.+.+|+++|..                 ++|.+.+.   ...+.||++||||++.+...+|+++|||+|+||
T Consensus       159 ~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lT  238 (349)
T d1gp6a_         159 KTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT  238 (349)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceE
Confidence                 00788899988887                 45555553   244679999999999888899999999999999


Q ss_pred             EEeeCCCCceEEEECCeeeeecCCCCeEEEEechhhHHhhhccccccceeeccCCCCceeEEEEeecCCCCceE-ecCcC
Q 044795          155 VLLQDDVPGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVI-APAKD  233 (274)
Q Consensus       155 ll~qd~~~GLqV~~~g~W~~V~p~~~~~vVnvGd~l~~~TnG~~~a~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~pl~~  233 (274)
                      ||+|+.++||||+++|+|++|+|.+|++|||+||+||+||||+|+||+|||+.+++.+|||++||++|+.|++| .|+++
T Consensus       239 lL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~  318 (349)
T d1gp6a_         239 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE  318 (349)
T ss_dssp             EEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGG
T ss_pred             EEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999865 89999


Q ss_pred             ccCcCCCCCCCcccHHHHHHHHHHc
Q 044795          234 LIDERHLAFYTNFTYAEYYQKFWNR  258 (274)
Q Consensus       234 ~~~~~~~~~y~~~~~~e~~~~~~~~  258 (274)
                      |+++++|++|+|++++||++.++..
T Consensus       319 ~v~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         319 MVSVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             HcCCCCCCCCCCccHHHHHHHHHhc
Confidence            9999999999999999999998753
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure