Citrus Sinensis ID: 044806


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70
MDFECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG
ccccccccccccccccccHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEcccccEEEccccc
ccccccccccccHHccccHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEccccEEEEccccc
mdfeckgksswpelvgVEGKVAAEtierenpiVSAHILLEGSIVFLDRYCRRVYVWVdtngivvdvptig
mdfeckgksswpelvgVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWvdtngivvdvptig
MDFECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG
***********PELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP***
*****KG*SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG
*********SWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG
********SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
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MDFECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query70 2.2.26 [Sep-21-2011]
P1987368 Inhibitor of trypsin and N/A no 0.957 0.985 0.567 2e-13
Q00783107 Proteinase inhibitor 1 OS N/A no 0.985 0.644 0.514 9e-13
P0105271 Chymotrypsin inhibitor I, N/A no 0.985 0.971 0.485 5e-12
P2407668 Glu S.griseus protease in N/A no 0.957 0.985 0.537 7e-12
P8238169 Proteinase inhibitor OS=L N/A no 0.942 0.956 0.515 2e-11
P05118111 Wound-induced proteinase N/A no 0.971 0.612 0.463 2e-10
P08454107 Wound-induced proteinase N/A no 0.985 0.644 0.442 3e-10
Q6XNP770 Protease inhibitor HPI OS N/A no 1.0 1.0 0.457 4e-09
P16231111 Wound-induced proteinase N/A no 0.971 0.612 0.478 7e-09
P20076119 Ethylene-responsive prote N/A no 0.942 0.554 0.420 1e-07
>sp|P19873|ITH5_CUCMA Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1 Back     alignment and function desciption
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 43/67 (64%)

Query: 4  ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63
           C GKSSWP LVGV G VA   IER+NP V A IL EG+ V  D  C RV +WV+  G+V
Sbjct: 2  SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLV 61

Query: 64 VDVPTIG 70
          V  P IG
Sbjct: 62 VSPPRIG 68




Specifically inhibits both trypsin and activated Hageman factor.
Cucurbita maxima (taxid: 3661)
>sp|Q00783|ICI1_SOLTU Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 SV=1 Back     alignment and function description
>sp|P01052|ICIA_SOLTU Chymotrypsin inhibitor I, A, B and C subunits OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|P24076|BGIA_MOMCH Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1 Back     alignment and function description
>sp|P82381|ICI_LINUS Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1 Back     alignment and function description
>sp|P05118|ICI1_SOLLC Wound-induced proteinase inhibitor 1 OS=Solanum lycopersicum GN=PIIF PE=2 SV=1 Back     alignment and function description
>sp|P08454|ICID_SOLTU Wound-induced proteinase inhibitor 1 OS=Solanum tuberosum PE=1 SV=2 Back     alignment and function description
>sp|Q6XNP7|HPI_HEVBR Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2 Back     alignment and function description
>sp|P16231|ICI1_SOLPE Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1 Back     alignment and function description
>sp|P20076|IER1_SOLLC Ethylene-responsive proteinase inhibitor 1 OS=Solanum lycopersicum PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query70
297737183119 unnamed protein product [Vitis vinifera] 1.0 0.588 0.718 6e-20
22543296571 PREDICTED: inhibitor of trypsin and hage 1.0 0.985 0.718 9e-20
40726076972 potato inhibitor I family protein [Popul 0.985 0.958 0.695 2e-19
35744104772 Inhibitor of trypsin and hageman factor 0.985 0.958 0.739 2e-19
29057857971 protease inhibitor 1 [Vitis cinerea var. 1.0 0.985 0.704 3e-19
40726077172 potato inhibitor I family protein [Popul 0.985 0.958 0.681 1e-18
22543296771 PREDICTED: inhibitor of trypsin and hage 1.0 0.985 0.690 2e-18
22411103272 predicted protein [Populus trichocarpa] 0.985 0.958 0.681 2e-18
22410277572 predicted protein [Populus trichocarpa] 0.985 0.958 0.681 3e-18
35653539070 PREDICTED: glu S.griseus protease inhibi 1.0 1.0 0.671 5e-18
>gi|297737183|emb|CBI26384.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 1   MDFECKGKSSWPELVGVEGKVAAETIERENP-IVSAHILLEGSIVFLDRYCRRVYVWVDT 59
           M  EC+GKSSWPELVGV+G+VAAETI+RENP I +  ILLEG+IV  D YC RV VWVD 
Sbjct: 49  MASECEGKSSWPELVGVQGEVAAETIKRENPHITTVDILLEGTIVTQDFYCTRVRVWVDE 108

Query: 60  NGIVVDVPTIG 70
           NGIV+ VPTIG
Sbjct: 109 NGIVISVPTIG 119




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432965|ref|XP_002284447.1| PREDICTED: inhibitor of trypsin and hageman factor [Vitis vinifera] gi|37359345|gb|AAN85825.1| protease inhibitor [Vitis vinifera] gi|147775788|emb|CAN62712.1| hypothetical protein VITISV_025108 [Vitis vinifera] Back     alignment and taxonomy information
>gi|407260769|gb|AFT92003.1| potato inhibitor I family protein [Populus tomentosa] gi|407260793|gb|AFT92015.1| potato inhibitor I family protein [Populus tomentosa] Back     alignment and taxonomy information
>gi|357441047|ref|XP_003590801.1| Inhibitor of trypsin and hageman factor [Medicago truncatula] gi|355479849|gb|AES61052.1| Inhibitor of trypsin and hageman factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|290578579|gb|ADD51184.1| protease inhibitor 1 [Vitis cinerea var. helleri x Vitis riparia] Back     alignment and taxonomy information
>gi|407260771|gb|AFT92004.1| potato inhibitor I family protein [Populus alba x Populus tremula var. glandulosa] gi|407260795|gb|AFT92016.1| potato inhibitor I family protein [Populus alba x Populus tremula var. glandulosa] Back     alignment and taxonomy information
>gi|225432967|ref|XP_002284454.1| PREDICTED: inhibitor of trypsin and hageman factor [Vitis vinifera] gi|297737185|emb|CBI26386.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111032|ref|XP_002315724.1| predicted protein [Populus trichocarpa] gi|222864764|gb|EEF01895.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102775|ref|XP_002334124.1| predicted protein [Populus trichocarpa] gi|222869703|gb|EEF06834.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356535390|ref|XP_003536228.1| PREDICTED: glu S.griseus protease inhibitor-like [Glycine max] gi|255638338|gb|ACU19481.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query70
TAIR|locus:206498170 AT2G38870 [Arabidopsis thalian 1.0 1.0 0.542 1.3e-13
UNIPROTKB|Q6XNP770 PI1 "Protease inhibitor HPI" [ 1.0 1.0 0.457 3.2e-10
TAIR|locus:210282285 AT3G46860 [Arabidopsis thalian 0.985 0.811 0.486 5.2e-10
TAIR|locus:2158397103 AT5G43570 [Arabidopsis thalian 0.857 0.582 0.5 2.2e-09
TAIR|locus:208305896 AT3G50020 [Arabidopsis thalian 0.9 0.656 0.402 0.0001
UNIPROTKB|Q4005984 Ica-2 "Chymotrypsin inhibitor 0.9 0.75 0.333 0.00013
TAIR|locus:2064981 AT2G38870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/70 (54%), Positives = 44/70 (62%)

Query:     1 MDFECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTN 60
             M  EC  K+SWPEL G  G  AA  IERENP V+A ++L+GS V  D  C RV V+VD N
Sbjct:     1 MSTECPRKNSWPELTGTNGDYAAVVIERENPTVNAAVILDGSPVTADFRCDRVRVFVDGN 60

Query:    61 GIVVDVPTIG 70
              IVV  P  G
Sbjct:    61 RIVVKTPKSG 70




GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0009611 "response to wounding" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
GO:0050832 "defense response to fungus" evidence=IMP
GO:0015824 "proline transport" evidence=RCA
UNIPROTKB|Q6XNP7 PI1 "Protease inhibitor HPI" [Hevea brasiliensis (taxid:3981)] Back     alignment and assigned GO terms
TAIR|locus:2102822 AT3G46860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158397 AT5G43570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083058 AT3G50020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q40059 Ica-2 "Chymotrypsin inhibitor 2" [Hordeum vulgare (taxid:4513)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P19873ITH5_CUCMANo assigned EC number0.56710.95710.9852N/Ano
P82381ICI_LINUSNo assigned EC number0.51510.94280.9565N/Ano
P24076BGIA_MOMCHNo assigned EC number0.53730.95710.9852N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query70
pfam0028063 pfam00280, potato_inhibit, Potato inhibitor I fami 1e-24
>gnl|CDD|201130 pfam00280, potato_inhibit, Potato inhibitor I family Back     alignment and domain information
 Score = 86.5 bits (215), Expect = 1e-24
 Identities = 35/63 (55%), Positives = 41/63 (65%)

Query: 8  KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
          K+SWPELVG  G+ A   IE+ENP V   +L EGS V  D  C RV V+V+ NGIVV  P
Sbjct: 1  KTSWPELVGKTGEEAKAIIEKENPDVDVVVLPEGSPVTADFRCNRVRVFVNDNGIVVRTP 60

Query: 68 TIG 70
           IG
Sbjct: 61 VIG 63


Length = 63

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 70
PF0028063 potato_inhibit: Potato inhibitor I family; InterPr 100.0
PF1172060 Inhibitor_I78: Peptidase inhibitor I78 family; Int 99.72
>PF00280 potato_inhibit: Potato inhibitor I family; InterPro: IPR000864 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
Probab=100.00  E-value=1.4e-34  Score=167.10  Aligned_cols=63  Identities=60%  Similarity=0.916  Sum_probs=59.4

Q ss_pred             CCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcCC
Q 044806            8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG   70 (70)
Q Consensus         8 k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~vG   70 (70)
                      |+|||||||+++++|+++|++|||++++.++++|+++|+|||||||+||+|++|+|+++|+||
T Consensus         1 K~sWPELVG~~~~~A~~~I~~e~P~v~v~vlp~gs~vt~df~~~RVrv~vd~~~~V~~~P~iG   63 (63)
T PF00280_consen    1 KTSWPELVGKSGEEAKAIIERENPDVTVVVLPEGSPVTMDFRCDRVRVFVDSNGIVVRVPRIG   63 (63)
T ss_dssp             -SB-GGGTTSBHHHHHHHHHHHSTTSEEEEEETTSEEESSBETTEEEEEEETTSBBES-SEEE
T ss_pred             CCCCchhcCCCHHHHHHHHHHHCCCCeEEEEeCCCCcCCCcCCCEEEEEECCCCeEEeCCCcC
Confidence            799999999999999999999999999999999999999999999999999999999999998



In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteinase inhibitors belong to MEROPS inhibitor family I13, clan IG. They inhibit peptidases of the S1 (IPR001254 from INTERPRO) and S8 (IPR000209 from INTERPRO) families []. Potato inhibitor type I sequences are not solely restricted to potatoes but are found in other plant species for example: barley endosperm chymotrypsin inhibitor [], and pumpkin trypsin inhibitor. Exceptions are found in leech's, e.g.Hirudo medicinalis (Medicinal leech), but not other metazoa []. In general, the proteins have retained a specificity towards chymotrypsin-like and elastase-like proteases []. Structurally these inhibitors are small (60 to 90 residues) and in contrast with other families of protease inhibitors, they lack disulphide bonds. The inhibitor is a wedge-shaped molecule, its pointed edge formed by the protease-binding loop, which contains the scissile bond. The loop binds tightly to the protease active site, subsequent cleavage of the scissile bond causing inhibition of the enzyme []. The inhibitors (designated type I and II) are synthesised in potato tubers, increasing in concentration as the tuber develops. Synthesis of the inhibitors throughout the plant is also induced by leaf damage; this systemic response being triggered by the release of a putative plant hormone []. Examples found in the bacteria and archaea are probable false positives.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0009611 response to wounding; PDB: 1TEC_I 1SBN_I 1ACB_I 1EGP_A 3TEC_I 2SEC_I 1EGL_A 2TEC_I 1SIB_I 1MEE_I ....

>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query70
1tin_A69 Three-Dimensional Structure In Solution Of Cucurbit 2e-14
1mit_A69 Recombinant Cucurbita Maxima Trypsin Inhibitor V (R 2e-14
1vbw_A68 Crystal Structure Of Bitter Gourd Trypsin Inhibitor 3e-13
3rdy_A79 Crystal Structure Of Buckwheat Trypsin Inhibitor Rb 1e-12
1dwm_A70 Solution Structure Of Linum Usitatissinum Trypsin I 2e-12
1hym_A45 Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Ave 3e-07
>pdb|1TIN|A Chain A, Three-Dimensional Structure In Solution Of Cucurbita Maxima Trypsin Inhibitor-V Determined By Nmr Spectroscopy Length = 69 Back     alignment and structure

Iteration: 1

Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/67 (56%), Positives = 43/67 (64%) Query: 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63 C GKSSWP LVGV G VA IER+NP V A IL EG+ V D C RV +WV+ G+V Sbjct: 3 SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLV 62 Query: 64 VDVPTIG 70 V P IG Sbjct: 63 VSPPRIG 69
>pdb|1MIT|A Chain A, Recombinant Cucurbita Maxima Trypsin Inhibitor V (Rcmti-V) (Nmr, Minimized Average Structure) Length = 69 Back     alignment and structure
>pdb|1VBW|A Chain A, Crystal Structure Of Bitter Gourd Trypsin Inhibitor Length = 68 Back     alignment and structure
>pdb|3RDY|A Chain A, Crystal Structure Of Buckwheat Trypsin Inhibitor Rbti At 1.84 Angstrom Resolution Length = 79 Back     alignment and structure
>pdb|1DWM|A Chain A, Solution Structure Of Linum Usitatissinum Trypsin Inhibitor (Luti) Length = 70 Back     alignment and structure
>pdb|1HYM|A Chain A, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average Nmr Structure) Length = 45 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query70
3rdy_A79 BWI-1=protease inhibitor/trypsin inhibitor; serine 3e-27
1dwm_A70 LUTI, linum usitatissinum trypsin inhibitor; serin 3e-27
1vbw_A68 Trypsin inhibitor BGIT; BGTI, protein binding; HET 4e-27
1mit_A69 RCMTI-V, trypsin inhibitor V; serine protease inhi 5e-27
2ci2_I83 Chymotrypsin inhibitor 2; proteinase inhibitor (ch 1e-25
1to2_I64 Chymotrypsin inhibitor 2; serine protease, hydrola 6e-24
1cse_I70 Eglin C; complex(serine proteinase-inhibitor); 1.2 3e-22
1hym_A45 CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi 1e-19
1cq4_A47 Protein (serine proteinase inhibitor 2); serine pr 1e-06
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} PDB: 3rdz_C Length = 79 Back     alignment and structure
 Score = 92.9 bits (231), Expect = 3e-27
 Identities = 35/66 (53%), Positives = 42/66 (63%)

Query: 4  ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63
          +C GK  WPELVG  G  AA+ IE EN  V A +L EGS V  D  C RV+V+VD  G+V
Sbjct: 13 QCSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVV 72

Query: 64 VDVPTI 69
          VD P +
Sbjct: 73 VDTPVV 78


>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1 Length = 70 Back     alignment and structure
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia} Length = 68 Back     alignment and structure
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A Length = 69 Back     alignment and structure
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I Length = 83 Back     alignment and structure
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ... Length = 64 Back     alignment and structure
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B Length = 70 Back     alignment and structure
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Length = 45 Back     alignment and structure
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1 Length = 47 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query70
1mit_A69 RCMTI-V, trypsin inhibitor V; serine protease inhi 100.0
1vbw_A68 Trypsin inhibitor BGIT; BGTI, protein binding; HET 100.0
1dwm_A70 LUTI, linum usitatissinum trypsin inhibitor; serin 100.0
1to2_I64 Chymotrypsin inhibitor 2; serine protease, hydrola 100.0
3rdy_A79 BWI-1=protease inhibitor/trypsin inhibitor; serine 100.0
2ci2_I83 Chymotrypsin inhibitor 2; proteinase inhibitor (ch 100.0
1cse_I70 Eglin C; complex(serine proteinase-inhibitor); 1.2 100.0
1cq4_A47 Protein (serine proteinase inhibitor 2); serine pr 99.93
1hym_A45 CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi 99.85
1hym_B26 CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi 99.37
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A Back     alignment and structure
Probab=100.00  E-value=1.2e-38  Score=185.49  Aligned_cols=68  Identities=56%  Similarity=0.915  Sum_probs=66.7

Q ss_pred             ccCCCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcCC
Q 044806            3 FECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG   70 (70)
Q Consensus         3 ~~~~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~vG   70 (70)
                      |+|++|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus         2 ~~c~~K~sWpELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Dfr~~RV~V~vD~~g~V~~vP~vG   69 (69)
T 1mit_A            2 SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG   69 (69)
T ss_dssp             CCCSSCSCCCCCTTSHHHHHHHHHHHHCTTSEEEEEETTCCCCSSCCTTEEEEEEETTTEEECCSSCC
T ss_pred             CCCCCcCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence            67999999999999999999999999999999999999999999999999999999999999999998



>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia} Back     alignment and structure
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1 Back     alignment and structure
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ... Back     alignment and structure
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C Back     alignment and structure
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I Back     alignment and structure
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B Back     alignment and structure
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1 Back     alignment and structure
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Back     alignment and structure
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 70
g1hym.168 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cuc 2e-27
d1dwma_69 d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum 3e-27
d1to2i_64 d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley 8e-25
d1csei_63 d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) 3e-21
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]} Length = 69 Back     information, alignment and structure
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 64 Back     information, alignment and structure
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query70
g1hym.168 Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [T 100.0
d1dwma_69 Trypsin inhibitor LUTI {Flax (Linum usitatissimum) 100.0
d1to2i_64 Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulga 100.0
d1csei_63 Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]} 100.0
d1pyya161 Penicillin-binding protein 2x (pbp-2x), c-terminal 93.38
d1pyya258 Penicillin-binding protein 2x (pbp-2x), c-terminal 86.32
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]} Back     information, alignment and structure
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]} Back     information, alignment and structure
>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure