Citrus Sinensis ID: 044828

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------

QHKIFSLSFLPLFPKKQTPLLFFSLVSLSYFTLTDTAQSKMNNNNNNNMNVNLSSSSSSSNSINMDHSAWLGFSLSNNNLQTSSTSDPESSHICLFEAFTTAATATTASGSNINLARGRGGEATGIASATDLSIFTGSPKLEDFLGGSCTATPPQPPQVQLGHHHLSSATTAHEIYDSELKTIAASFLRGFATEQTDSHHQQQQQQHLKHHHQQQQQLVPLVAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGITGKSKNSSESVSDCKSLDGGSRSDDRDISSASSHLAAFASSHPATSTLSFALPIKQDPSADYWSNLLGYQNNTTATPLTNAKSLSIAPTYLQSPTSSPSFNVDFAANPSSGVNESSNNGLFNVGNYLQQQQQQQQGGVSNSTTTTTTSAHTGSSNIPFATPIGLNSNSYESWISPSLHSFQTAKPSLSVFQTPIFGME

ccccEEcccccccccccccccEEEccEEEccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccccEEEEEcccccccccccccccEEEccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccEEEEccccccEEcccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccEEEEEccccccccccccEEEEEEEEEEEEEEcccHHHHccccccccccccccccccccccccccccccccEcccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEcccccEEEEEEccccccccccccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEcccccccccccEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEccccccccHHHHHcccccccccHHcccccHccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHccccccccccccccccccccccccEEEcccccccc

qhkifslsflplfpkkqtplLFFSLVSLSYFTLTDTAQSKmnnnnnnnmnvnlsssssssnsinmdhsawlgfslsnnnlqtsstsdpesshiclfeafttaatattasgsninlargrggeatgiasatdlsiftgspkledflggsctatppqppqvqlghhhlssattaHEIYDSELKTIAASFLRGfateqtdshHQQQQQQHLKHHHQQQQQlvplvaqpapkktvdtfgqrtsiyrgvtrhrwtgryeahlwdnscrregqsrkgrqgkysgydkEEKAARAYDLAALkywgpttttnfpvsnYEKELEDMKNMTRQEFVASLRRkssgfsrgasiyrgvtrhhqhgrwqarigrvagnkdlylgtfSTQEEAAEAYDIAAIKFRglnavtnfdmsrydvksiansnlpiggitgksknssesvsdcksldggsrsddrdisSASSHLAAfasshpatstlsfalpikqdpsadyWSNLlgyqnnttatpltnakslsiaptylqsptsspsfnvdfaanpssgvnessnnglfnvGNYLQQQQqqqqggvsnsttttttsahtgssnipfatpiglnsnsyeswispslhsfqtakpslsvfqtpifgme

qhkifslsflplfpkKQTPLLFFSLVSLSYFTLTDTAQSKMNNNNNNNMNVNLSSSSSSSNSINMDHSAWLGFSLSNNNLQTSSTSDPESSHICLFEAFTTAATATTASGSNINLARGRGGEATGIASATDLSIFTGSPKLEDFLGGSCTATPPQPPQVQLGHHHLSSATTAHEIYDSELKTIAASFLRGFATEQTDSHHQQQQQQHLKHHHQQQQQLVPLVAQPAPkktvdtfgqrtsiyrgvtrhrwtgryeahlwdnscrregqsrkgrqgkysgydkeEKAARAYDLAALkywgpttttnfpvSNYEKELEDMKNMTRQEFVAslrrkssgfsrgasiyrgvtrhhqhgrwqarigrvagNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIansnlpiggitgksknssesvsdcKSLDGGSRSDDRDISSASSHLAAFASSHPATSTLSFALPIKQDPSADYWSNLLGYQNNTTATPLTNAKSLSIAPTYLQSPTSSPSFNVDFAANPSSGVNESSNNGLFNVGNYLQQQQQQQQGGVSNSTTTTTTsahtgssnipFATPIGLNSNSYESWISPSLHsfqtakpslsvfqtpifgme

QHKIFSLSFLPLFPKKQtpllffslvslsyftltDTAQskmnnnnnnnmnvnlsssssssnsinmDHSAWLGFslsnnnlqtsstsDPESSHICLFEafttaatattaSGSNINLARGRGGEATGIASATDLSIFTGSPKLEDFLGGSCTATPPQPPQVQLGHHHLSSATTAHEIYDSELKTIAASFLRGFATEQTDShhqqqqqqhlkhhhqqqqqlVPLVAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQeeaaeaYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGITGKSKNSSESVSDCKsldggsrsddrdissasshlaafasshpaTSTLSFALPIKQDPSADYWSNLLGYQNNTTATPLTNAKSLSIAPTYLQSPTSSPSFNVDFAANPSSGVNESSNNGLFNVGNYLqqqqqqqqggvsnsttttttsahtgssNIPFATPIGLNSNSYESWISPSLHSFQTAKPSLSVFQTPIFGME

***IFSLSFLPLFPKKQTPLLFFSLVSLSYFTLT***********************************WL********************HICLFEAFTTAATATTASGSNINLA*******TGIASATDLSIFTGSPKLEDFLG************************TAHEIYDSELKTIAASFLRGF***************************************VDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSC***********************ARAYDLAALKYWGPTTTTNFPVSNY****************************GASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPI****************************************************FALPIK***SADYWSNLLGYQNNTTAT**********************************************************************************************SWI*************************

**KIFSLSFLPLFPKKQTPLLFFSLVSLSYF**************************************************************************************************************EDFL**************************************************************************************************VTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNM************************GVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSR******************************************************************************************************************************************************************************************************AKPSLSVFQTPIFGM*

QHKIFSLSFLPLFPKKQTPLLFFSLVSLSYFTLTDTAQSKMNNNNNNNMNVN**********INMDHSAWLGFSLSNNNL**********SHICLFEAFTTAATATTASGSNINLARGRGGEATGIASATDLSIFTGSPKLEDFLGGSCTATPPQPPQVQLGHHHLSSATTAHEIYDSELKTIAASFLRGFAT************************LVPLVAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCR*****************KEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGV*********QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGITG*******************************HLAAFASSHPATSTLSFALPIKQDPSADYWSNLLGYQNNTTATPLTNAKSLSIAPTYLQSPTSSPSFNVDFAANPSSGVNESSNNGLFNVGNYLQ***********************GSSNIPFATPIGLNSNSYESWISPSLHSFQTAKPSLSVFQTPIFGME

*HKIFSLSFLPLFPKKQTPLLFFSLVSLSYFTLTDTAQSKMNNNN*NNMNV*L****************WLGFSLSNNNLQTSSTSDPESSHICLFEAFTTAATATTASGSNI*********ATGIASATDLSIFTGSPKLEDFLGGSCTATPPQPPQVQLGHHHLSSATTAHEIYDSELKTIAASFLRGFAT******************************************QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPI***********************************************TSTLSFALPIKQDPSADYWSNLLGYQNNTTATPLTN*****IAPTYLQ*****PSFN*****************************************************NIPFATPIGLNSNSYESWISPSLHSFQTAKPSLSVFQTPIFGME

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		617	2.2.26 [Sep-21-2011]
Q6PQQ3		558	AP2-like ethylene-respons	yes	no	0.784	0.867	0.514	1e-129
Q5YGP7		568	AP2-like ethylene-respons	no	no	0.345	0.375	0.799	1e-104
Q5YGP8		574	AP2-like ethylene-respons	no	no	0.350	0.376	0.769	1e-101
Q6PQQ4		584	AP2-like ethylene-respons	no	no	0.350	0.369	0.788	1e-101
Q8LSN2		579	AP2-like ethylene-respons	N/A	no	0.350	0.373	0.783	1e-100
Q8L3U3		579	AP2-like ethylene-respons	N/A	no	0.350	0.373	0.783	1e-100
Q38914		555	AP2-like ethylene-respons	no	no	0.470	0.522	0.597	2e-96
Q1PFE1		415	AP2-like ethylene-respons	no	no	0.324	0.481	0.792	2e-96
Q52QU2		581	AP2-like ethylene-respons	no	no	0.325	0.345	0.808	6e-90
Q6J9N8		498	AP2-like ethylene-respons	no	no	0.316	0.391	0.820	2e-89

>sp\|Q6PQQ3\|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2	Back alignment and function desciption

 Score =  464 bits (1193), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/560 (51%), Positives = 343/560 (61%), Gaps = 76/560 (13%)

Query: 82  TSSTSDPESSHICL---FEAFTTAATATTASGSNINLARGRGGEATGIASATDLSIFTGS 138
           TSSTSD    H      F+AF+T         S +    G  G +   A+A  LS++ G 
Sbjct: 51  TSSTSDHHHPHPSHLSLFQAFST---------SPVERQDGSPGVSPSDATAV-LSVYPGG 100

Query: 139 PKLEDFLGGSCTATPPQP-PQVQ-LGHHHLSS-------ATTAHEIYDSELKTIAASFLR 189
           PKLE+FLGG  + T  +P  QVQ LG    SS         +A EIYDSELK+IAASFL 
Sbjct: 101 PKLENFLGGGASTTTTRPMQQVQSLGGVVFSSDLQPPLHPPSAAEIYDSELKSIAASFLG 160

Query: 190 GFATEQTDSHHQQQQQQHLKHHHQQQQQLVPLVAQPAPKKTVDTFGQRTSIYRGVTRHRW 249
            +    +  H  +    H     QQ   L    A P PKK V++FGQRTSIYRGVTRHRW
Sbjct: 161 NY----SGGHSSEVSSVH----KQQPNPLAVSEASPTPKKNVESFGQRTSIYRGVTRHRW 212

Query: 250 TGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSN 309
           TGRYEAHLWDNSCRREGQSRKGRQ    GYDKE+KAARAYDLAALKYWGPTTTTNFP+SN
Sbjct: 213 TGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISN 272

Query: 310 YEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLY 369
           YE ELE+MK+MTRQEFVASLRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLY
Sbjct: 273 YESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLY 332

Query: 370 LGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGITGKSKNSSES 429
           LGTFSTQEEAAEAYDIAAIKFRGLNAVTNFD+SRYDVKSIA+ NLP+GG+  K   ++ +
Sbjct: 333 LGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASCNLPVGGLMPKPSPATAA 392

Query: 430 VSDCKSLDGGSRSDDRDISSASS--HLAAFASSHPATSTLSFALPIKQDPSADYWSNLLG 487
                 L   S SD   +++ S   ++A   + H  T   +  +PIK DP+  YWSN+ G
Sbjct: 393 ADKTVDL---SPSDSPSLTTPSLTFNVATPVNDHGGTFYHT-GIPIKPDPADHYWSNIFG 448

Query: 488 YQNNTTAT--PLTNAKSLSIAPTYLQSPTSSPSFNVDFAANPSSGVNESSNNGLFNVGNY 545
           +Q N  A   PL N                   F  D   NPS G         + +   
Sbjct: 449 FQANPKAEMRPLAN-------------------FGSDL-HNPSPG---------YAIMPV 479

Query: 546 LQQQQQQQQGGVSNSTTTTTTSAHTGS-SNIPFATPIGLNSNSYESW-------ISPSLH 597
           +Q+ +    G    S      SA +   S IP ++   + SN  E +        +    
Sbjct: 480 MQEGENNFGGSFVGSDGYNNHSAASNPVSAIPLSSTTTM-SNGNEGYGGNINWINNNISS 538

Query: 598 SFQTAKPSLSVFQTPIFGME 617
           S+QTAK +LSV  TP+FG+E
Sbjct: 539 SYQTAKSNLSVLHTPVFGLE 558

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5YGP7\|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5YGP8\|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q6PQQ4\|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2	Back alignment and function description

>sp\|Q8LSN2\|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1	Back alignment and function description

>sp\|Q8L3U3\|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1	Back alignment and function description

>sp\|Q38914\|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2	Back alignment and function description

>sp\|Q1PFE1\|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1	Back alignment and function description

>sp\|Q52QU2\|AIL6_ARATH AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1	Back alignment and function description

>sp\|Q6J9N8\|AIL7_ARATH AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana GN=AIL7 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		617
118483152		545	unknown [Populus trichocarpa]	0.824	0.933	0.661	0.0
224126071		542	AP2 domain-containing transcription fact	0.820	0.933	0.663	0.0
224143705		540	AP2 domain-containing transcription fact	0.821	0.938	0.661	1e-178
356546106		528	PREDICTED: AP2-like ethylene-responsive	0.802	0.937	0.589	1e-158
356562309		530	PREDICTED: AP2-like ethylene-responsive	0.790	0.920	0.598	1e-158
310892429		530	aintegumenta-like 5 [Glycine max]	0.790	0.920	0.596	1e-157
225446036		501	PREDICTED: AP2-like ethylene-responsive	0.760	0.936	0.562	1e-149
357479631		509	AP2-like ethylene-responsive transcripti	0.779	0.944	0.551	1e-144
297735402		464	unnamed protein product [Vitis vinifera]	0.700	0.931	0.540	1e-142
56567285		478	AP2 protein [Elaeis guineensis]	0.752	0.970	0.514	1e-130

>gi\|118483152\|gb\|ABK93482.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/582 (66%), Positives = 428/582 (73%), Gaps = 73/582 (12%)

Query: 67  HSAWLGFSLSNNNLQTSSTSDP---ESSHICLFEAFTTAATATTASGSNINLARGRGGEA 123
           H  WLGFSLSN++   ++ + P   +SSH+CLFEAF T  T T+A   N  +A GR    
Sbjct: 6   HQNWLGFSLSNHHHMNNTINIPTSSDSSHLCLFEAFNT--TTTSAQEVNAVVAAGR---- 59

Query: 124 TGIASATDLSIFTGS-PKLEDFLGGSCTATPPQPPQVQLGHHHLS------------SAT 170
                ATD+S+FT S PKLEDFLGG  + +P Q PQ Q      S            S +
Sbjct: 60  -----ATDISLFTASGPKLEDFLGGCTSTSPSQTPQQQPLCGQFSTETPVTTTATTLSDS 114

Query: 171 TAHEIYDSELKTIAASFLRGFATEQTDSHHQQQQQQHLKHHHQQQQQLVPLVAQPAPKKT 230
           T+ EIYDSELKTIAASFLRGFA+  TD       Q+H        QQL+ + A+ APKKT
Sbjct: 115 TSSEIYDSELKTIAASFLRGFAS--TDHQKIDSTQKH--------QQLL-VQAEHAPKKT 163

Query: 231 VDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYD 290
           V+TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ    GYDKEEKAARAYD
Sbjct: 164 VETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYD 223

Query: 291 LAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHH 350
           LAALKYWGPTTTTNFPVSNYEKE+E MK+MTRQEFVASLRRKSSGFSRGASIYRGVTRHH
Sbjct: 224 LAALKYWGPTTTTNFPVSNYEKEIEGMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHH 283

Query: 351 QHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIA 410
           QHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVK+IA
Sbjct: 284 QHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKNIA 343

Query: 411 NSNLPIGGITGKSKNSSESVSDCKSLDGGSRSDDRDISSASSHLAAFASSHPATSTLSFA 470
           NSNLPIGGI+GKSKNSSES SD KS+D GSRSDDRD+SSASS    FA S PATSTLSFA
Sbjct: 344 NSNLPIGGISGKSKNSSESASDSKSID-GSRSDDRDLSSASS--VTFA-SQPATSTLSFA 399

Query: 471 LPIKQDPSADYWSNLLGYQNNTTATPLTNAKSLSIAP-TYLQSPTSSPS------FNVDF 523
           +PIKQDPS DYW+N+LGYQN TT     N+ S  + P T LQS TS P+      F +DF
Sbjct: 400 IPIKQDPS-DYWTNILGYQNTTTMNNAKNSSSSIVDPSTLLQSSTSGPAFQSPTVFKMDF 458

Query: 524 AANPSSGVNESSNNGLFNVGNYLQQQQQQQQGGVSNSTTTTTTSAHTGSSNIPFATPIGL 583
            A  +S VNES+NNGL   G Y QQQ      G+  S+          SSNIPFATPI  
Sbjct: 459 NA--NSSVNESNNNGLLFNGGYTQQQIS----GIGTSSP---------SSNIPFATPIAF 503

Query: 584 NSN--------SYESWISPSLHSFQTAKPSLSVFQTPIFGME 617
           +SN        SY SWI+  LHSFQ+AKP LSV+QTPIFG+E
Sbjct: 504 HSNGNSYEGNPSYSSWIAQPLHSFQSAKPKLSVYQTPIFGIE 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224126071\|ref\|XP_002329654.1\| AP2 domain-containing transcription factor [Populus trichocarpa] gi\|222870535\|gb\|EEF07666.1\| AP2 domain-containing transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224143705\|ref\|XP_002325046.1\| AP2 domain-containing transcription factor [Populus trichocarpa] gi\|222866480\|gb\|EEF03611.1\| AP2 domain-containing transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356546106\|ref\|XP_003541472.1\| PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Glycine max]	Back alignment and taxonomy information

>gi\|356562309\|ref\|XP_003549414.1\| PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Glycine max]	Back alignment and taxonomy information

>gi\|310892429\|gb\|ADP37372.1\| aintegumenta-like 5 [Glycine max]	Back alignment and taxonomy information

>gi\|225446036\|ref\|XP_002268683.1\| PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357479631\|ref\|XP_003610101.1\| AP2-like ethylene-responsive transcription factor BBM [Medicago truncatula] gi\|355511156\|gb\|AES92298.1\| AP2-like ethylene-responsive transcription factor BBM [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297735402\|emb\|CBI17842.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|56567285\|gb\|AAV98627.1\| AP2 protein [Elaeis guineensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		617
TAIR\|locus:2173009		558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.692	0.765	0.533	9.8e-116
TAIR\|locus:2008216		568	PLT2 "PLETHORA 2" [Arabidopsis	0.612	0.665	0.496	3.5e-91
TAIR\|locus:2178915		584	BBM "BABY BOOM" [Arabidopsis t	0.338	0.357	0.780	9e-90
TAIR\|locus:2091891		574	PLT1 "PLETHORA 1" [Arabidopsis	0.444	0.477	0.610	9.6e-89
TAIR\|locus:2155680		498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.423	0.524	0.622	3.8e-85
TAIR\|locus:2137559		555	ANT "AINTEGUMENTA" [Arabidopsi	0.448	0.499	0.590	4.5e-84
TAIR\|locus:2030265		415	AT1G72570 [Arabidopsis thalian	0.337	0.501	0.740	1.5e-83
TAIR\|locus:2200477		345	ADAP "ARIA-interacting double	0.273	0.489	0.650	1.9e-60
TAIR\|locus:2017829		313	WRI4 "WRINKLED 4" [Arabidopsis	0.273	0.539	0.650	1.3e-59
TAIR\|locus:2005493		432	AP2 "APETALA 2" [Arabidopsis t	0.290	0.414	0.476	8.9e-38

TAIR\|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1081 (385.6 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
 Identities = 247/463 (53%), Positives = 286/463 (61%)

Query:    88 PESSHICLFEXXXXXXXXXXXSGSNINLARGRGGEATGIASATDLSIFTGSPKLEDFLGG 147
             P  SH+ LF+           S S +    G  G +   A+A  LS++ G PKLE+FLGG
Sbjct:    60 PHPSHLSLFQAF---------STSPVERQDGSPGVSPSDATAV-LSVYPGGPKLENFLGG 109

Query:   148 SCTATPPQP-PQVQ-LGHHHLSS-------ATTAHEIYDSELKTIAASFLRGFATEQTDS 198
               + T  +P  QVQ LG    SS         +A EIYDSELK+IAASFL  ++   +  
Sbjct:   110 GASTTTTRPMQQVQSLGGVVFSSDLQPPLHPPSAAEIYDSELKSIAASFLGNYSGGHSSE 169

Query:   199 XXXXXXXXXXXXXXXXXXXXVPLVAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLW 258
                                     A P PKK V++FGQRTSIYRGVTRHRWTGRYEAHLW
Sbjct:   170 VSSVHKQQPNPLAVSE--------ASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLW 221

Query:   259 DNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMK 318
             DNSCRREGQSRKGRQ    GYDKE+KAARAYDLAALKYWGPTTTTNFP+SNYE ELE+MK
Sbjct:   222 DNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMK 281

Query:   319 NMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXX 378
             +MTRQEFVASLRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQ  
Sbjct:   282 HMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEE 341

Query:   379 XXXXYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGITGKSKNSSESVSDCKXXXX 438
                 YDIAAIKFRGLNAVTNFD+SRYDVKSIA+ NLP+GG+  K   ++ + +D K    
Sbjct:   342 AAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASCNLPVGGLMPKPSPAT-AAAD-KTVDL 399

Query:   439 XXXXXXXXXXXXXXXXXXXXXXXXXTSTLSFALPIKQDPSADYWSNLLGYQNNTTAT--P 496
                                       +     +PIK DP+  YWSN+ G+Q N  A   P
Sbjct:   400 SPSDSPSLTTPSLTFNVATPVNDHGGTFYHTGIPIKPDPADHYWSNIFGFQANPKAEMRP 459

Query:   497 LTNAKS-L-SIAPTYLQSPTSSPSFNVDFAAN--PSSGVNESS 535
             L N  S L + +P Y   P      N +F  +   S G N  S
Sbjct:   460 LANFGSDLHNPSPGYAIMPVMQEGEN-NFGGSFVGSDGYNNHS 501

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR\|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PQQ3	AIL5_ARATH	No assigned EC number	0.5142	0.7844	0.8673	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		617
smart00380		64	smart00380, AP2, DNA-binding domain in plant prote	4e-27
cd00018		61	cd00018, AP2, DNA-binding domain found in transcri	2e-24
smart00380		64	smart00380, AP2, DNA-binding domain in plant prote	3e-21
cd00018		61	cd00018, AP2, DNA-binding domain found in transcri	6e-18
pfam00847		53	pfam00847, AP2, AP2 domain	4e-11
pfam00847		53	pfam00847, AP2, AP2 domain	1e-09

>gnl\|CDD\|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

 Score =  103 bits (260), Expect = 4e-27
 Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 342 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDM 401
            YRGV +    G+W A I   +  K ++LGTF T EEAA AYD AA KFRG +A  NF  
Sbjct: 1   KYRGVRQRPW-GKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 402 SRYDV 406
           S YD 
Sbjct: 60  SLYDS 64

Length = 64

>gnl\|CDD\|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

>gnl\|CDD\|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

>gnl\|CDD\|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

>gnl\|CDD\|216148 pfam00847, AP2, AP2 domain	Back alignment and domain information

>gnl\|CDD\|216148 pfam00847, AP2, AP2 domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		617
cd00018		61	AP2 DNA-binding domain found in transcription regu	99.71
smart00380		64	AP2 DNA-binding domain in plant proteins such as A	99.71
smart00380		64	AP2 DNA-binding domain in plant proteins such as A	99.71
cd00018		61	AP2 DNA-binding domain found in transcription regu	99.69
PHA00280		121	putative NHN endonuclease	99.47
PHA00280		121	putative NHN endonuclease	99.24
PF00847		56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.94
PF00847		56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.91

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

Probab=99.71  E-value=1.2e-17  Score=134.34  Aligned_cols=61  Identities=48%  Similarity=0.738  Sum_probs=57.1

Q ss_pred             CCeeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcccCCCCC
Q 044828          239 SIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVS  308 (617)
Q Consensus       239 S~YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~~NFP~s  308 (617)
                      |+|+||+++++ |||+|+|+++.        .||++|||+|+|+||||+|||+|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~~--------~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDPS--------GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeCC--------CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999998 99999999873        489999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs	Back alignment and domain information

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)	Back alignment and domain information

>PHA00280 putative NHN endonuclease	Back alignment and domain information

>PHA00280 putative NHN endonuclease	Back alignment and domain information

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes	Back alignment and domain information

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		617
1gcc_A		63	Ethylene responsive element binding factor 1; tran	1e-15
1gcc_A		63	Ethylene responsive element binding factor 1; tran	2e-10

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63	Back alignment and structure

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 343 YRGVTRHHQHGRWQARIGRVAGNKD-LYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNF 399
           YRGV R    G++ A I   A N   ++LGTF T E+AA AYD AA + RG  A+ NF
Sbjct: 3   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

PyMOL of 1gcc

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		617
1gcc_A		63	Ethylene responsive element binding factor 1; tran	99.82
1gcc_A		63	Ethylene responsive element binding factor 1; tran	99.8
1u3e_M		174	HNH homing endonuclease; HNH catalytic motif, heli	93.83
3igm_B		77	PF14_0633 protein; AP2 domain, specific transcript	86.81
3igm_B		77	PF14_0633 protein; AP2 domain, specific transcript	80.21

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A	Back alignment and structure

Probab=99.82  E-value=4.5e-21  Score=156.10  Aligned_cols=61  Identities=34%  Similarity=0.668  Sum_probs=56.9

Q ss_pred             CeeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcccCCCCC
Q 044828          240 IYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVS  308 (617)
Q Consensus       240 ~YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~~NFP~s  308 (617)
                      +||||++++| |||+|+|+++.       ++|+++|||+|+|+||||+|||.|+++++|..+++|||.+
T Consensus         2 ~yrGV~~r~~-gkw~A~I~~~~-------~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEETT-------TTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCC-CcEEEEEcccc-------CCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999999988 99999999983       3589999999999999999999999999999999999974

PyMOL of 1gcc

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A	Back alignment and structure

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1	Back alignment and structure

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}	Back alignment and structure

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		617
d1gcca_		63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-21
d1gcca_		63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-20

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.8 bits (210), Expect = 4e-21
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 343 YRGVTRHHQHGRWQARIGRVAGN-KDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNF 399
           YRGV R    G++ A I   A N   ++LGTF T E+AA AYD AA + RG  A+ NF
Sbjct: 3   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

PyMOL of d1gcca_

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		617
d1gcca_		63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.83
d1gcca_		63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.81

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=9.1e-22  Score=158.75  Aligned_cols=61  Identities=34%  Similarity=0.668  Sum_probs=56.8

Q ss_pred             CeeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcccCCCCC
Q 044828          240 IYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVS  308 (617)
Q Consensus       240 ~YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~~NFP~s  308 (617)
                      .||||+++++ |||+|+||++.       .+++++|||+|+|+||||+|||.|+++++|+.+.+|||++
T Consensus         2 ~yrGVr~r~~-gkw~A~Ir~~~-------~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEETT-------TTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCC-CCEEEEEecCC-------CCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            4999999987 99999999973       5689999999999999999999999999999999999975

PyMOL of d1gcca_

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure