Citrus Sinensis ID: 044855

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWRE
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccHHHHHccccccEEEccccccccccccccccccccccEEEcccccccccHHHHHccccccEEEccccEEEEEcccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHHccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHHcc
Coil and Loop (DISEMBL)
dlssnnfeghlpqCLNHLTHLKVLDIFnnqlsgnfpstltnftsleyldlssinfqgtfsinslaNHSKLEVLLLSsgsnmlqvkteswhptsqlkvlklsdcqlhvipsfllqqdhlkfLDLShnklvgnfpicgkmddglrsstslegldisgnipnwiGNISTLRVLLMSKNYLEANIPVqlnhlksleLIDIFENSLssklitldlrdnkffgripyqinELSNLHVLLLRGnslqghipNELCQLAKLRIMDLsnnifsgsipsclgnvsfwre
Flexible Loop (DISEMBL)
dlssnnfeGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEgldisgnipnWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIfsgsipsclgnvsfwre
Low Complexity Region (SEG)
DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWRE
Disordered region (IsUnstruct)
*********HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW**
Disordered Region (DISOPRED)
DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR*
Disordered Region (DISEMBL)
DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWRE
Disordered Region (DISPRO)
***SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.860	0.233	0.333	3e-26
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.949	0.211	0.319	3e-25
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.924	0.237	0.349	2e-24
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.921	0.253	0.308	4e-24
O82318	960	Probably inactive leucine	no	no	0.946	0.275	0.346	9e-24
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.964	0.215	0.310	1e-23
Q9LRT1	1016	Probably inactive leucine	no	no	0.928	0.254	0.347	2e-23
Q9LHP4	1141	Receptor-like protein kin	no	no	0.906	0.221	0.337	2e-23
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.896	0.220	0.316	2e-22
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.967	0.240	0.306	2e-22

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 138/288 (47%), Gaps = 48/288 (16%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS+N FE  LP+ L++LT LKV+D+  N   G FP  L   T L +++ SS NF G F 
Sbjct: 107 DLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHVNASSNNFSG-FL 165

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
              L N + LEVL    G          +   S              +PS      +LKF
Sbjct: 166 PEDLGNATTLEVLDFRGG----------YFEGS--------------VPSSFKNLKNLKF 201

Query: 121 LDLSHNKLVGNFP-ICGKMDDGLRSSTSLEGLDIS-----GNIPNWIGNISTLRVLLMSK 174
           L LS N   G  P + G++       +SLE + +      G IP   G ++ L+ L ++ 
Sbjct: 202 LGLSGNNFGGKVPKVIGEL-------SSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAV 254

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLSSK----------LITLDLRDNKFFGRIPYQIN 224
             L   IP  L  LK L  + +++N L+ K          L+ LDL DN+  G IP ++ 
Sbjct: 255 GNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVG 314

Query: 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
           EL NL +L L  N L G IP+++ +L  L +++L  N   GS+P  LG
Sbjct: 315 ELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLG 362

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 137/288 (47%), Gaps = 23/288 (7%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L  N+F G +P  L  L  ++ L++  NQL G  P  LT   +L+ LDLSS N  G   
Sbjct: 246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH 305

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLK 119
                  ++LE L+L+       +        + LK L LS+ QL   IP+ +     LK
Sbjct: 306 -EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLK 364

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL-----DISGNIPNWIGNISTLRVLLMSK 174
            LDLS+N L G  P      D L     L  L      + G + + I N++ L+   +  
Sbjct: 365 LLDLSNNTLTGQIP------DSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYH 418

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQIN 224
           N LE  +P ++  L  LE++ ++EN  S          ++L  +D   N+  G IP  I 
Sbjct: 419 NNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIG 478

Query: 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
            L +L  L LR N L G+IP  L    ++ ++DL++N  SGSIPS  G
Sbjct: 479 RLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG 526

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 140/286 (48%), Gaps = 28/286 (9%)

Query: 5   NNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSL 64
           N   G LP  +  L HLK L +FNN   G+ P +L    SLE +DL    F G    + L
Sbjct: 374 NTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPH-L 432

Query: 65  ANHSKLEVLLLSSGSNMLQVKT-ESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLKFLD 122
            +  KL + +L  GSN L  K   S      L+ ++L D +L  V+P F  +   L +++
Sbjct: 433 CHGQKLRLFIL--GSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFP-ESLSLSYVN 489

Query: 123 LSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYL 177
           L  N   G+ P        L S  +L  +D+S N     IP  +GN+ +L +L +S NYL
Sbjct: 490 LGSNSFEGSIP------RSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYL 543

Query: 178 EANIPVQLNHLKSLELIDIFENSLSSK----------LITLDLRDNKFFGRIPYQINELS 227
           E  +P QL+    L   D+  NSL+            L TL L DN F G IP  + EL 
Sbjct: 544 EGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELD 603

Query: 228 NLHVLLLRGNSLQGHIPNELCQLAKLRI-MDLSNNIFSGSIPSCLG 272
            L  L +  N+  G IP+ +  L  LR  +DLS N+F+G IP+ LG
Sbjct: 604 RLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLG 649

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 142/279 (50%), Gaps = 22/279 (7%)

Query: 5   NNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSL 64
           N   G +P  ++ L  L+VL+++NN LSG  PS L   + L++LD+SS +F G    ++L
Sbjct: 318 NKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIP-STL 376

Query: 65  ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLS 124
            N   L  L+L + +   Q+        S ++V   ++     IP    + + L+ L+L+
Sbjct: 377 CNKGNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELA 436

Query: 125 HNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEA 179
            N+L G  P  G + D    S SL  +D S N     +P+ I +I  L+  L++ N++  
Sbjct: 437 GNRLSGGIP--GDISD----SVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISG 490

Query: 180 NIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNL 229
            +P Q     SL  +D+  N+L+           KL++L+LR+N   G IP QI  +S L
Sbjct: 491 EVPDQFQDCPSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSAL 550

Query: 230 HVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
            VL L  NSL G +P  +     L ++++S N  +G +P
Sbjct: 551 AVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVP 589

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 144/289 (49%), Gaps = 25/289 (8%)

Query: 1   DLSSNNFEGH-LPQCLNHLTHLKVLDIFNNQLSGNFPSTL--TNFTSLEYLDLSSINFQG 57
           DLS  N  G  L      L  L+ +++ NN LSG  P  +  T+  SL YL+LS+ NF G
Sbjct: 78  DLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSG 137

Query: 58  TFSINSLANHSKLEVLLLSSGSNMLQVKT-ESWHPTSQLKVLKLSDCQL--HVIPSFLLQ 114
           +     L N   L++      +NM   +        S L+VL L    L  HV P +L  
Sbjct: 138 SIPRGFLPNLYTLDL-----SNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHV-PGYLGN 191

Query: 115 QDHLKFLDLSHNKLVGNFPI-CGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMS 173
              L+FL L+ N+L G  P+  GKM +       L   ++SG IP  IG +S+L  L + 
Sbjct: 192 LSRLEFLTLASNQLTGGVPVELGKMKN--LKWIYLGYNNLSGEIPYQIGGLSSLNHLDLV 249

Query: 174 KNYLEANIPVQLNHLKSLELIDIFENSLSSK----------LITLDLRDNKFFGRIPYQI 223
            N L   IP  L  LK LE + +++N LS +          LI+LD  DN   G IP  +
Sbjct: 250 YNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELV 309

Query: 224 NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
            ++ +L +L L  N+L G IP  +  L +L+++ L +N FSG IP+ LG
Sbjct: 310 AQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLG 358

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 151/328 (46%), Gaps = 59/328 (17%)

Query: 5   NNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSL 64
           NN EG LP+ ++ L  L+VL ++ N+ SG  P  + N TSL+ +D+   +F+G     S+
Sbjct: 418 NNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIP-PSI 476

Query: 65  ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHV----------------- 107
               +L +L L   + ++     S     QL +L L+D QL                   
Sbjct: 477 GRLKELNLLHLRQ-NELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLML 535

Query: 108 --------IPSFLLQQDHLKFLDLSHNKLVGNF-PICGK--------MDDGLRSSTSLE- 149
                   +P  L+   +L  ++LSHN+L G   P+CG          ++G      LE 
Sbjct: 536 YNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLEL 595

Query: 150 ----GLD--------ISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIF 197
                LD        ++G IP  +G I  L +L MS N L   IP+QL   K L  ID+ 
Sbjct: 596 GNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLN 655

Query: 198 ENSLS----------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 247
            N LS          S+L  L L  N+F   +P ++   + L VL L GNSL G IP E+
Sbjct: 656 NNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEI 715

Query: 248 CQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
             L  L +++L  N FSGS+P  +G +S
Sbjct: 716 GNLGALNVLNLDKNQFSGSLPQAMGKLS 743

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 146/285 (51%), Gaps = 26/285 (9%)

Query: 2   LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
           LS+NNF G++   L++  HL+ LD+ +N LSG  PS+L + TSL++LDL+  +F GT S 
Sbjct: 108 LSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSD 166

Query: 62  NSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSF---LLQQDHL 118
           +   N S L  L LS      Q+ +  +   S L  L LS  +    PSF   + + + L
Sbjct: 167 DLFNNCSSLRYLSLSHNHLEGQIPSTLFR-CSVLNSLNLSRNRFSGNPSFVSGIWRLERL 225

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDI-----SGNIPNWIGNISTLRVLLMS 173
           + LDLS N L G+ P+      G+ S  +L+ L +     SG +P+ IG    L  + +S
Sbjct: 226 RALDLSSNSLSGSIPL------GILSLHNLKELQLQRNQFSGALPSDIGLCPHLNRVDLS 279

Query: 174 KNYLEANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQI 223
            N+    +P  L  LKSL   D+  N LS          + L+ LD   N+  G++P  I
Sbjct: 280 SNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSSI 339

Query: 224 NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
           + L +L  L L  N L G +P  L    +L I+ L  N FSG+IP
Sbjct: 340 SNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIP 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 138/290 (47%), Gaps = 37/290 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+ S   +  LP+ L     L+ L I    L+G  P +L +   L+ LDLSS    G   
Sbjct: 87  DIESVPLQLSLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIP 146

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
             SL+    LE L+L+S  N L  K                      IP  + +   LK 
Sbjct: 147 W-SLSKLRNLETLILNS--NQLTGK----------------------IPPDISKCSKLKS 181

Query: 121 LDLSHNKLVGNFPI-CGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA 179
           L L  N L G+ P   GK+  GL         +ISG IP+ IG+ S L VL +++  +  
Sbjct: 182 LILFDNLLTGSIPTELGKLS-GLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSG 240

Query: 180 NIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQINELSNL 229
           N+P  L  LK LE + I+   +S          S+L+ L L +N   G IP +I +L+ L
Sbjct: 241 NLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKL 300

Query: 230 HVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWRE 279
             L L  NSL G IP E+   + L+++DLS N+ SGSIPS +G +SF  E
Sbjct: 301 EQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEE 350

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 125/278 (44%), Gaps = 28/278 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DL  N   G  P  L ++  LK LD+  N  SG  P  + N   LE L L++ +  G   
Sbjct: 314 DLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIP 373

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLK 119
           +  +     L+VL     S   Q+  E       LKVL L        +PS ++    L+
Sbjct: 374 VE-IKQCGSLDVLDFEGNSLKGQIP-EFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLE 431

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSK 174
            L+L  N L G+FP+       L + TSL  LD+SGN     +P  I N+S L  L +S 
Sbjct: 432 RLNLGENNLNGSFPV------ELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSG 485

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLL 234
           N     IP  + +L               KL  LDL      G +P +++ L N+ V+ L
Sbjct: 486 NGFSGEIPASVGNL--------------FKLTALDLSKQNMSGEVPVELSGLPNVQVIAL 531

Query: 235 RGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
           +GN+  G +P     L  LR ++LS+N FSG IP   G
Sbjct: 532 QGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFG 569

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 148/330 (44%), Gaps = 60/330 (18%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS+NNF G +P  L + T L  LD+  N  S   P TL +   LE L L  INF     
Sbjct: 105 DLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLY-INFLTGEL 163

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHV-IPSFLLQQDHLK 119
             SL    KL+VL L   +N+     +S     +L  L +   Q    IP  +     L+
Sbjct: 164 PESLFRIPKLQVLYLDY-NNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQ 222

Query: 120 FLDLSHNKLVGNFP------------------------------------------ICGK 137
            L L  NKLVG+ P                                            G 
Sbjct: 223 ILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGG 282

Query: 138 MDDGLRSSTSLEGL-----DISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLE 192
           +   L + +SL+ L     ++SG IP+ +G +  L +L +S+N L  +IP +L +  SL 
Sbjct: 283 VPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLN 342

Query: 193 LIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGH 242
           L+ + +N L            KL +L+L +N+F G IP +I +  +L  LL+  N+L G 
Sbjct: 343 LLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGE 402

Query: 243 IPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
           +P E+ ++ KL+I  L NN F G+IP  LG
Sbjct: 403 LPVEMTEMKKLKIATLFNNSFYGAIPPGLG 432

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
255553269	2793	receptor-kinase, putative [Ricinus commu	0.967	0.096	0.379	5e-45
358345471	933	Receptor kinase [Medicago truncatula] gi	0.996	0.297	0.364	2e-40
357468853	624	Receptor protein kinase [Medicago trunca	0.956	0.427	0.352	2e-36
358345693	1011	Receptor-like protein kinase [Medicago t	0.974	0.269	0.365	5e-36
358345705	703	Receptor protein kinase-like protein [Me	0.974	0.386	0.369	6e-36
357468869	703	Receptor protein kinase-like protein [Me	0.974	0.386	0.369	6e-36
357468861	1016	Receptor-like protein kinase [Medicago t	0.974	0.267	0.359	7e-36
297743510	1188	unnamed protein product [Vitis vinifera]	0.960	0.225	0.356	7e-36
449491173	2349	PREDICTED: uncharacterized protein LOC10	0.985	0.117	0.314	8e-36
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.992	0.259	0.383	8e-36

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 175/335 (52%), Gaps = 65/335 (19%)

Query: 2    LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
            LS N F G LPQCL++LT+L+VLD+ +N+ SGN  S ++  TSL+YL LS   F+G FS 
Sbjct: 1218 LSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLFLSGNKFEGLFSF 1277

Query: 62   NSLANHSKLEVLLLSSGSNMLQVKTE--SWHPTSQLKVLKLSDCQLHV----IPSFLLQQ 115
            +SLANH KLE+  LSSGS ML+++TE   W PT QLKV+ L +C L++    IPSFLL Q
Sbjct: 1278 SSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNLRTRRIPSFLLYQ 1337

Query: 116  DHLKFLDLSHNKLVGNFP-----------ICGKMDDGLRSSTSLEGL------------D 152
              L+F+DLSHN L+G FP           +   M++    +  L                
Sbjct: 1338 HDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSYRHELINLKISSNS 1397

Query: 153  ISGNIPNWIG-NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------- 203
            I+G IP  IG  +S LR L MS N  E NIP  ++ ++ L ++D+  N  S         
Sbjct: 1398 IAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLSNNYFSGELPRSLLS 1457

Query: 204  ---------------------------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236
                                       +L  LD+ +N F G+I         L VL +  
Sbjct: 1458 NSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVDFFYCPRLSVLDISK 1517

Query: 237  NSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCL 271
            N + G IP +LC L+ + I+DLS N F G++PSC 
Sbjct: 1518 NKVAGVIPIQLCNLSSVEILDLSENRFFGAMPSCF 1552

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 168/368 (45%), Gaps = 90/368 (24%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS N   G+ PQCL +LT L+VLD+ +N   GN PS + +  SLEYL L   NF G FS
Sbjct: 188 DLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLSLFDTNFDGIFS 247

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTE---SWHPTSQLKVLKLSDCQLH-----VIPSFL 112
            +SL NHSKLEV LLS  +N L V+TE   SWHPT QLKVL+L +C L+       P+FL
Sbjct: 248 FSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLNSKRDGTFPTFL 307

Query: 113 LQQDHLKFLDLSHNKLVGNFP---------------ICGKMDDGLRSSTSLEGL------ 151
           L Q  L+ LDLSHNKL GNFP               +       L   T   GL      
Sbjct: 308 LYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPTFKHGLLDLQIS 367

Query: 152 --DISGNIPNWIGNI-STLRVLLMSKNYLEANIPVQLNHLKSLELIDI----FENSLSSK 204
              I G +   IG I   L  + +SKN  E  +P  +  ++++  +D+    F   LSS 
Sbjct: 368 NNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDLSNNNFSGELSSH 427

Query: 205 LIT------------------------------LDLRDNKF------------------- 215
           LI+                              L L +N F                   
Sbjct: 428 LISNLTSLRLLRLSHNSFHGLVPLLSNLTRLNWLYLNNNSFSGVIEDGVSNNSSLFSLDI 487

Query: 216 -----FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC 270
                 GRIP  I   + L VL L  N LQG IPNELC L  L  +DLS N  S  +P C
Sbjct: 488 SNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLSYLDLSENNLSDFLPYC 547

Query: 271 LGNVSFWR 278
             N  + +
Sbjct: 548 FKNFKYMK 555

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468853|ref|XP_003604711.1| Receptor protein kinase [Medicago truncatula] gi|355505766|gb|AES86908.1| Receptor protein kinase [Medicago truncatula]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 172/332 (51%), Gaps = 65/332 (19%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+S N F   LP+CL++LT+L+VL++ NN  SGNFPS ++N TSL YL       QG+FS
Sbjct: 280 DISYNMFSAKLPECLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSFS 339

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTE--SWHPTSQLKVLKLSDCQLH-----VIPSFLL 113
           +++LANHS L+ L +S  ++ + ++TE   W P  QLK L L +C L+     VIP+FL 
Sbjct: 340 LSTLANHSNLQHLYISPENSGVLIETEKTKWFPKFQLKTLILRNCNLNKEKGGVIPTFLS 399

Query: 114 QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIG-NISTLRVLLM 172
            Q +L FLDLS N LVG+FP    +D+   +   +   ++SG +P  IG  + +++ L  
Sbjct: 400 YQYNLIFLDLSRNNLVGSFP-SWLIDNHNMNYLDISNNNLSGLLPKDIGIFLPSVKYLNF 458

Query: 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKL--------------------------- 205
           S N  E NIP  +  +K LE +D+ +N  S +L                           
Sbjct: 459 SWNSFEGNIPSSIGKMKQLEYLDLSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGKIPR 518

Query: 206 -----ITLDLRDNKFFG------------------------RIPYQINELSNLHVLLLRG 236
                  L L +N F G                        +IP  I   S++ VLL+ G
Sbjct: 519 FSVNMFGLFLNNNNFSGTLEDVLENNTGLGMLFISNYSITGKIPSSIGMFSDMQVLLMSG 578

Query: 237 NSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
           N L+G IP E+  +A L+++DLS N  +GSIP
Sbjct: 579 NLLEGEIPIEISNMAILQMLDLSQNKLNGSIP 610

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 181/339 (53%), Gaps = 67/339 (19%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+S N F   LP CL++LT+L+VL++ NN  SGNFPS ++N TSL YL       QG+FS
Sbjct: 279 DISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSFS 338

Query: 61  INSLANHSKLEVLLLSSGSNM-LQVKTE--SWHPTSQLKVLKLSDCQLH-----VIPSFL 112
           +++LANHS LEVL +SS +N+ + ++TE   W P  QLK L + +C L+     VIP+FL
Sbjct: 339 LSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTFL 398

Query: 113 LQQDHLKFLDLSHNKLVGNFPICGKM--DDGLR---SSTSLEGL---DIS---------- 154
             Q +L +L LS N + G+ P    +  DD +    S+ +L GL   DI           
Sbjct: 399 SYQYNLVYLVLSSNNINGSLPSNWLIHNDDMIYLDISNNNLSGLLPKDIGIFLPNVTYLN 458

Query: 155 -------GNIPNWIGNISTLRVLLMSKNYLEANIPVQL----NHLKSLEL--------ID 195
                  GNIP+ IG +  L++L  S+N+    +P QL    ++L+ L+L        I 
Sbjct: 459 FSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNIP 518

Query: 196 IFENSL----------------------SSKLITLDLRDNKFFGRIPYQINELSNLHVLL 233
            F NS+                      +++L TL + +N F G IP  I   SN+  LL
Sbjct: 519 RFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALL 578

Query: 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
           +  N L+G IP E+  + +L+I+DLS N  +GSIP   G
Sbjct: 579 MSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPPLSG 617

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 169/336 (50%), Gaps = 64/336 (19%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+S N F   LP+CL++LT+L VL++  N  SGNFPS ++N TSL YL L     QG+FS
Sbjct: 14  DISYNMFSAQLPECLSNLTNLNVLELSYNLFSGNFPSFISNLTSLAYLSLFGNYMQGSFS 73

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTE--SWHPTSQLKVLKLSDCQLH-----VIPSFLL 113
           +++LANHS L+ L +SS S    ++TE   W P  QLK L L +C L+     VIP+FL 
Sbjct: 74  LSTLANHSNLQHLYISSQSIGANIETEKTKWLPKFQLKTLILRNCNLNKDKGSVIPTFLS 133

Query: 114 QQDHLKFLDLSHNKLVGNFP---ICGKMDDGLRSSTSLEGL------------------- 151
            Q  L  +DLS NKLVG FP   I   M     S  SL G                    
Sbjct: 134 YQYSLILMDLSSNKLVGLFPRWFIHSSMKYLDISINSLSGFLPKDIGIFLPSVTYMNFSS 193

Query: 152 -DISGNIPNWIGNISTLRVLLMSKNYLEANIPVQL----NHLKSLEL--------IDIFE 198
            +  GNIP+ IG +  L  L +S N+    +P QL    ++L+ L+L        I  F 
Sbjct: 194 NNFEGNIPSSIGKMKKLESLDLSHNHFSGELPKQLATGCDNLQYLKLSNNFLHGNIPKFY 253

Query: 199 NSL----------------------SSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236
           NS+                      ++ L+ L + +N F G IP  I   S + VLL+  
Sbjct: 254 NSMNVEFLFLNNNNFSGTLEDVLGNNTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQ 313

Query: 237 NSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
           N L+G IP E+  ++ L+I+DLS N   GSIP   G
Sbjct: 314 NILEGEIPIEISNMSSLKILDLSQNKLIGSIPKLSG 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 169/336 (50%), Gaps = 64/336 (19%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+S N F   LP+CL++LT+L VL++  N  SGNFPS ++N TSL YL L     QG+FS
Sbjct: 14  DISYNMFSAQLPECLSNLTNLNVLELSYNLFSGNFPSFISNLTSLAYLSLFGNYMQGSFS 73

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTE--SWHPTSQLKVLKLSDCQLH-----VIPSFLL 113
           +++LANHS L+ L +SS S    ++TE   W P  QLK L L +C L+     VIP+FL 
Sbjct: 74  LSTLANHSNLQHLYISSQSIGANIETEKTKWLPKFQLKTLILRNCNLNKDKGSVIPTFLS 133

Query: 114 QQDHLKFLDLSHNKLVGNFP---ICGKMDDGLRSSTSLEGL------------------- 151
            Q  L  +DLS NKLVG FP   I   M     S  SL G                    
Sbjct: 134 YQYSLILMDLSSNKLVGLFPRWFIHSSMKYLDISINSLSGFLPKDIGIFLPSVTYMNFSS 193

Query: 152 -DISGNIPNWIGNISTLRVLLMSKNYLEANIPVQL----NHLKSLEL--------IDIFE 198
            +  GNIP+ IG +  L  L +S N+    +P QL    ++L+ L+L        I  F 
Sbjct: 194 NNFEGNIPSSIGKMKKLESLDLSHNHFSGELPKQLATGCDNLQYLKLSNNFLHGNIPKFY 253

Query: 199 NSL----------------------SSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236
           NS+                      ++ L+ L + +N F G IP  I   S + VLL+  
Sbjct: 254 NSMNVEFLFLNNNNFSGTLEDVLGNNTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQ 313

Query: 237 NSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
           N L+G IP E+  ++ L+I+DLS N   GSIP   G
Sbjct: 314 NILEGEIPIEISNMSSLKILDLSQNKLIGSIPKLSG 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 179/339 (52%), Gaps = 67/339 (19%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+S N F   LP CL++LT+L+VL++ NN  SGNFPS ++N TSL YL       QG+FS
Sbjct: 279 DISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSFS 338

Query: 61  INSLANHSKLEVLLLSSGSNM-LQVKTE--SWHPTSQLKVLKLSDCQLH-----VIPSFL 112
           +++LANHS LEVL +SS +N+ + ++TE   W P  QLK L + +C L+     VIP+FL
Sbjct: 339 LSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTFL 398

Query: 113 LQQDHLKFLDLSHNKLVGNFPICGKM--DDGLR---SSTSLEGL---------------- 151
             Q +L +L LS N + G+ P    +  DD +    S+ +L GL                
Sbjct: 399 SYQYNLVYLVLSSNNINGSLPSNWLIHNDDMIYLDISNNNLSGLLPKDIGIFLPNVTYLN 458

Query: 152 ----DISGNIPNWIGNISTLRVLLMSKNYLEANIPVQL----NHLKSLEL--------ID 195
                  GNIP+ IG +  L++L  S+N+    +P QL    ++L+ L+L        I 
Sbjct: 459 FSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNIP 518

Query: 196 IFENSL----------------------SSKLITLDLRDNKFFGRIPYQINELSNLHVLL 233
            F NS+                      +++L TL + +N F G IP  I   SN+  LL
Sbjct: 519 RFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALL 578

Query: 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
           +  N L+G IP E+  + +L+I+DLS N  +GSIP   G
Sbjct: 579 MSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPPLSG 617

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743510|emb|CBI36377.3| unnamed protein product [Vitis vinifera]

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 167/323 (51%), Gaps = 55/323 (17%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-TNFTSLEYLDLSSINFQGTF 59
           DLS N F+G LP CLN+ T L++LD+ +N  SGNF S L  N TSLEY+DLSS  F+G+F
Sbjct: 552 DLSYNLFQGILPPCLNNFTSLRLLDLSSNLFSGNFSSPLLRNLTSLEYIDLSSNQFEGSF 611

Query: 60  SINSLANHSKLEVLLLSSGSNMLQVKTE---SWHPTSQLKVLKLSDCQLHV-IPSFLLQQ 115
           S +S ANHSKL+V++L   +N  +V+TE    W P  QLK+L LS C+L   +P FL  Q
Sbjct: 612 SFSSFANHSKLQVVILGRDNNKFEVETEYPVGWVPLFQLKILSLSSCKLTGDLPGFLQYQ 671

Query: 116 DHLKFLDLSHNKLVGNFP-------------------ICGKMDDGLRSSTSLEGLDIS-- 154
             L  +D+SHN L G+FP                   + G++   L  +T +  LDIS  
Sbjct: 672 FRLVGVDISHNNLTGSFPYWLLENNTRLESLVLRNNSLMGQLLP-LGPNTRINSLDISHN 730

Query: 155 ----------------------------GNIPNWIGNISTLRVLLMSKNYLEANIPVQLN 186
                                       G +P+ I  +  L +L +S N     +P QL 
Sbjct: 731 QLDGQLQENVAHMIPNIMFLNLSNNGFEGILPSSIAELRALWILDLSTNNFSGEVPKQLL 790

Query: 187 HLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 246
             K L ++ +  N    ++ + D         IP QI  +++L  L+L  N+ +G +P E
Sbjct: 791 ATKDLGILKLSNNKFHGEIFSRDFNLTGLLCEIPSQIGNMTDLTTLVLGNNNFKGKLPLE 850

Query: 247 LCQLAKLRIMDLSNNIFSGSIPS 269
           + QL ++  +D+S N FSGS+PS
Sbjct: 851 ISQLQRMEFLDVSQNAFSGSLPS 873

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491173|ref|XP_004158820.1| PREDICTED: uncharacterized protein LOC101224990 [Cucumis sativus]

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 169/350 (48%), Gaps = 75/350 (21%)

Query: 1    DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPST-LTNFTSLEYLDLSSINFQGTF 59
            ++ +N     +P+C+ + T+LK LD+  NQLSG  PST +   TS+EYL     +F+G+F
Sbjct: 1063 NIKNNQIRDKIPECIGNFTNLKFLDVSRNQLSGEIPSTAIAKLTSIEYLSFLDNDFEGSF 1122

Query: 60   SINSLANHSKLEVLLLSSG---SNMLQVKTE---SWHPTSQLKVLKLSDCQLHV------ 107
            S +SLANHSKL   +LS      N++QV+TE    W PT QL++L L +C L+       
Sbjct: 1123 SFSSLANHSKLWYFMLSGSDYVGNIIQVETEDEPQWQPTFQLEILTLKNCNLNKQAAAAS 1182

Query: 108  -IPSFLLQQDHLKFLDLSHNKLVGNFPIC---------------GKMDDGLRSSTSLEGL 151
             +PSFLL Q+ L ++DL+HN L G FP                   +   L+ STS+  L
Sbjct: 1183 NVPSFLLSQNKLIYIDLAHNHLTGAFPFWLLQNNSELVHLDLSDNLLTGPLQLSTSINNL 1242

Query: 152  DI--------SGNIPNWIGN-ISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS 202
             +        SG +P  +G  +  +    +S+N  E N+P+ +  +KSL  +D+  N+ S
Sbjct: 1243 RVMEISNNLFSGQLPTNLGFLLPKVEHFNLSRNNFEGNLPLSIEQMKSLHWLDLSNNNFS 1302

Query: 203  S-------------------------------------KLITLDLRDNKFFGRIPYQINE 225
                                                   L+ LD+ +N   G+IP  I  
Sbjct: 1303 GDLQISMFNYIPFLEFLLLGSNNFSGSIEDGFINTEGFSLVALDISNNMISGKIPSWIGS 1362

Query: 226  LSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
            L  L  + +  N   G +P E+C L++L I+D+S N   G +PSC  + S
Sbjct: 1363 LKGLQYVQISKNHFAGELPVEMCSLSQLIILDVSQNQLFGKVPSCFNSSS 1412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 176/318 (55%), Gaps = 41/318 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-TNFTSLEYLDLSSINFQGTF 59
           DLS N F+G LP CLN+LT L++LD+ +N LSGN  S L  N TSLEY+DLS  +F+G+F
Sbjct: 343 DLSYNLFQGTLPPCLNNLTSLRLLDLSSNHLSGNLSSPLLPNLTSLEYIDLSYNHFEGSF 402

Query: 60  SINSLANHSKLEVLLLSSGSNMLQVKTE---SWHPTSQLKVLKLSDCQLHV-IPSFLLQQ 115
           S +S ANHSKL+V++L S +N  +V+TE    W P  QLK L LS+C+L   IP FL  Q
Sbjct: 403 SFSSFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLKALFLSNCKLTGDIPDFLQYQ 462

Query: 116 DHLKFLDLSHNKLVGNFP-------------------ICGKMDDGLRSSTSLEGLDIS-- 154
             L+ +DLSHN L G F                    + G++   LR +T +  LDIS  
Sbjct: 463 FKLEVVDLSHNNLTGRFTNWLLENNTRLEFLVLRNNSLMGQLLP-LRPNTRILSLDISHN 521

Query: 155 ---GNIPNWIGN-ISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSK------ 204
              G +   +G+ I  +  L +S N  E  +P  +  + SL ++D+  N+ S +      
Sbjct: 522 QLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMSSLRVLDLSANNFSGEVPKQLL 581

Query: 205 ----LITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSN 260
               L+ L L  NKF G I  +   ++ L +L L  N   G + N +   ++L ++D+SN
Sbjct: 582 ATKDLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQFMGTLSNVISGSSQLMVLDVSN 641

Query: 261 NIFSGSIPSCLGNVSFWR 278
           N  SG IPS +GN++  R
Sbjct: 642 NYMSGEIPSGIGNMTELR 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.935	0.261	0.404	1.1e-38
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.935	0.267	0.397	1.1e-35
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.928	0.239	0.383	4.1e-34
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.956	0.276	0.377	6.9e-34
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.885	0.272	0.370	1.9e-32
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.946	0.259	0.346	1.1e-28
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.967	0.303	0.334	4.6e-28
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.949	0.276	0.354	1.4e-27
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.910	0.250	0.358	2.6e-27
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.942	0.210	0.337	2.8e-27

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 114/282 (40%), Positives = 153/282 (54%)

Query:     2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
             LS+N   G  P CL  LT L+VLD+ +NQL+GN PS L N  SLEYL L   NF+G FS+
Sbjct:   265 LSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSL 324

Query:    62 NSLANHSKLEVLLLSSGSNMLQVKTE-SWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
               LAN SKL+VL L S SN L+V+ E SW P  QL V+ L  C L  +P FLL Q  L  
Sbjct:   325 GLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHH 384

Query:   121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLRVLLMSK 174
             +DLS N++ GNFP        L ++T LE L +  N      +P    N+  L V +   
Sbjct:   385 VDLSDNQIHGNFPSWL-----LENNTKLEVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKF 439

Query:   175 NYLEA-NIPVQLNHLKSLELI-DIFENSLSSKLIT------LDLRDNKFFGRIPYQ-INE 225
             N+L   N    L HL  + L  + F+ +L S L        LDL  N+F G++P + +  
Sbjct:   440 NHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKG 499

Query:   226 LSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSI 267
               NL +L L  N L G +  E     +L +M + NN+F+G+I
Sbjct:   500 CYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNI 541

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 113/284 (39%), Positives = 156/284 (54%)

Query:     1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             DL  N FEG LP CL +L  L+VLD+ +NQLSGN P++  +  SLEYL LS  NF+G FS
Sbjct:   266 DLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFS 325

Query:    61 INSLANHSKLEVLLLSSGSNMLQVKTES-WHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
             +N LAN +KL+V  LSS S MLQV+TES W P  QL V  L  C L  IP+FL+ Q +L+
Sbjct:   326 LNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLR 385

Query:   120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNIST----LRVLLMSKN 175
              +DLS N+L G+ P        L ++  L+ L +  N    I  I T    L+VL  S N
Sbjct:   386 LVDLSSNRLSGDIPTWL-----LENNPELKVLQLKNNSFT-IFQIPTIVHKLQVLDFSAN 439

Query:   176 YLEANIPVQLNHL--KSLELIDI---FENSLSSKL-----IT-LDLRDNKFFGRIPYQI- 223
              +   +P  + H+  + L +      F+ +L S +     I+ LDL  N F G +P  + 
Sbjct:   440 DITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLL 499

Query:   224 NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSI 267
                 +L  L L  NS  G I     +L  L ++ + NN+F+G I
Sbjct:   500 TGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEI 543

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 4.1e-34, P = 4.1e-34
 Identities = 107/279 (38%), Positives = 153/279 (54%)

Query:     1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTS-LEYLDLSSINFQGTF 59
             DLSSN     LP CL +LTHL+ LD+ NNQL+GN  S ++   S LEYL L   NF G+F
Sbjct:   364 DLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSF 422

Query:    60 SINSLANHSKLEVLLLSSGSNMLQVKTES-WHPTSQLKVLKLSDCQL-HVIPSFLLQQDH 117
               NSL N ++L V  LSS   ++QV+TES W P  QLK+L LS+C L   +  FL+ Q  
Sbjct:   423 LFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRD 482

Query:   118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYL 177
             L F+DLSHNKL G FP        ++++T L+ + +SGN    +     L +L+     L
Sbjct:   483 LCFVDLSHNKLTGTFPTWL-----VKNNTRLQTILLSGNSLTKL----QLPILVHGLQVL 533

Query:   178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237
             + +  +  + ++  ++  +F N     L  ++   N F G IP  I E+ +L VL +  N
Sbjct:   534 DISSNMIYDSIQE-DIGMVFPN-----LRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSN 587

Query:   238 SLQGHIPNE-LCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
              L G +P   L     LR++ LSNN   G I S   N++
Sbjct:   588 GLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLT 626

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 6.9e-34, P = 6.9e-34
 Identities = 105/278 (37%), Positives = 143/278 (51%)

Query:     1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             DLS N   GHLP CL  LT L+VLD+ +N+L+G  PS+L +  SLEYL L   +F+G+FS
Sbjct:   250 DLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFS 309

Query:    61 INSLANHSKLEVLLLSSGSNMLQVKTES-WHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
               SLAN S L VL L S S+ LQV +ES W P  QL V+ L  C +  +P FLL Q  L+
Sbjct:   310 FGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLR 369

Query:   120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEG-LDISGNIPNWIGNISTLRVLLMSKNYL- 177
              +DLS N + G  P     ++       L+  L  S  IP    N+  L V     N+L 
Sbjct:   370 HVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIPKSAHNLLFLDVSANDFNHLF 429

Query:   178 EANIPVQLNHLKSLELI-DIFENSLSSKLITL------DLRDNKFFGRIPYQ-INELSNL 229
               NI     HL+ L    + F+ +L S L  +      DL  N F G +P   +N   ++
Sbjct:   430 PENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSM 489

Query:   230 HVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSI 267
              +L L  N L G I  E      +  + + NN+F+G I
Sbjct:   490 AILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKI 527

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.9e-32, P = 1.9e-32
 Identities = 100/270 (37%), Positives = 142/270 (52%)

Query:     1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             DL   NF G LP C  +L  L+ LD+ +NQL+GN P + ++  SLEYL LS  +F+G FS
Sbjct:   226 DLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFS 285

Query:    61 INSLANHSKLEVLLLSSGSNMLQVKTES-WHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
             +N L N +KL+V + SS  +M+QVK ES W P  QL VL L  C L  IP+FL+ Q +L 
Sbjct:   286 LNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLH 345

Query:   120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVLLMSKNY 176
              +DLS N++ G  P        L ++  LE L +  N   I     ++  L+VL  S+N 
Sbjct:   346 VVDLSGNRISGIIPTWL-----LENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENN 400

Query:   177 LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236
             +    P            D F   L + L+ ++  +N F G  P  + E+ N+  L L  
Sbjct:   401 IGGLFP------------DNFGRVLPN-LVHMNGSNNGFQGNFPSSMGEMYNISFLDLSY 447

Query:   237 NSLQGHIPNELCQLA-KLRIMDLSNNIFSG 265
             N+L G +P         L I+ LS+N FSG
Sbjct:   448 NNLSGELPQSFVSSCFSLSILQLSHNKFSG 477

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 97/280 (34%), Positives = 141/280 (50%)

Query:     2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
             LS+NNF G++   L++  HL+ LD+ +N LSG  PS+L + TSL++LDL+  +F GT S 
Sbjct:   108 LSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSD 166

Query:    62 NSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSF---LLQQDHL 118
             +   N S L  L LS      Q+ +  +   S L  L LS  +    PSF   + + + L
Sbjct:   167 DLFNNCSSLRYLSLSHNHLEGQIPSTLFR-CSVLNSLNLSRNRFSGNPSFVSGIWRLERL 225

Query:   119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
             + LDLS N L G+ P+ G +         L+    SG +P+ IG    L  + +S N+  
Sbjct:   226 RALDLSSNSLSGSIPL-GILSLHNLKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFS 284

Query:   179 ANIPVQLNHLKSLELIDIFENSLSSK----------LITLDLRDNKFFGRIPYQINELSN 228
               +P  L  LKSL   D+  N LS            L+ LD   N+  G++P  I+ L +
Sbjct:   285 GELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSSISNLRS 344

Query:   229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
             L  L L  N L G +P  L    +L I+ L  N FSG+IP
Sbjct:   345 LKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIP 384

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 4.6e-28, P = 4.6e-28
 Identities = 96/287 (33%), Positives = 148/287 (51%)

Query:     1 DLSSNNFEGHLPQCLNH-LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
             DLS NNF   LP+ +   L  L+ L++ NN+  GN PS++    ++E++DLS  NF G  
Sbjct:   354 DLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKL 413

Query:    60 SINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
               N       L  L LS       +  +S   TS + ++  ++     IP  LL    L 
Sbjct:   414 PRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLS 473

Query:   120 FLDLSHNKLVGNFPI-CGKMD-DGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYL 177
              +DLS+N L G  P   G    + LR S +     + G IP  + NI  L +L +S N+L
Sbjct:   474 VIDLSNNLLTGTIPRWLGNFFLEVLRISNNR----LQGAIPPSLFNIPYLWLLDLSGNFL 529

Query:   178 EANIPVQLNHLKSLELIDIFENSLSSK--------LITLDLRDNKFFGRIPYQINELSNL 229
               ++P++ +      ++D+  N+L+          L  LDLR+NK  G IP       ++
Sbjct:   530 SGSLPLRSSSDYGY-ILDLHNNNLTGSIPDTLWYGLRLLDLRNNKLSGNIPL-FRSTPSI 587

Query:   230 HVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF 276
              V+LLR N+L G IP ELC L+ +R++D ++N  + SIPSC+ N+SF
Sbjct:   588 SVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSF 634

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 102/288 (35%), Positives = 147/288 (51%)

Query:     1 DLSSNNFEGH-LPQCLNHLTHLKVLDIFNNQLSGNFPSTL--TNFTSLEYLDLSSINFQG 57
             DLS  N  G  L      L  L+ +++ NN LSG  P  +  T+  SL YL+LS+ NF G
Sbjct:    78 DLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSG 137

Query:    58 TFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQL--HVIPSFLLQQ 115
             +     L N   L  L LS+     ++  +     S L+VL L    L  HV P +L   
Sbjct:   138 SIPRGFLPN---LYTLDLSNNMFTGEIYNDIG-VFSNLRVLDLGGNVLTGHV-PGYLGNL 192

Query:   116 DHLKFLDLSHNKLVGNFPI-CGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSK 174
               L+FL L+ N+L G  P+  GKM + L+    L   ++SG IP  IG +S+L  L +  
Sbjct:   193 SRLEFLTLASNQLTGGVPVELGKMKN-LKW-IYLGYNNLSGEIPYQIGGLSSLNHLDLVY 250

Query:   175 NYLEANIPVQLNHLKSLELIDIFENSLSSK----------LITLDLRDNKFFGRIPYQIN 224
             N L   IP  L  LK LE + +++N LS +          LI+LD  DN   G IP  + 
Sbjct:   251 NNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVA 310

Query:   225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
             ++ +L +L L  N+L G IP  +  L +L+++ L +N FSG IP+ LG
Sbjct:   311 QMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLG 358

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.6e-27, P = 2.6e-27
 Identities = 99/276 (35%), Positives = 146/276 (52%)

Query:     1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             D+S N+F G L    N    L  L+   N LSGN    L N  SLE LDL    FQG+  
Sbjct:   122 DISQNSFSGSLFLFSNESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLP 181

Query:    61 INSLANHSKLEVLLLSSGSNML-QVKTESWH-PTSQLKVLKLSDCQLHVIPSFLLQQDHL 118
              +S  N  KL  L LS G+N+  ++ +     P+ +  +L  ++ +  + P F    + L
Sbjct:   182 -SSFKNLQKLRFLGLS-GNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPEFG-NINSL 238

Query:   119 KFLDLSHNKLVGNFPI-CGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYL 177
             K+LDL+  KL G  P   GK+   L +    E  + +G IP  IG+I+TL+VL  S N L
Sbjct:   239 KYLDLAIGKLSGEIPSELGKLKS-LETLLLYEN-NFTGTIPREIGSITTLKVLDFSDNAL 296

Query:   178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237
                IP+++  LK+L+L+++  N LS              G IP  I+ L+ L VL L  N
Sbjct:   297 TGEIPMEITKLKNLQLLNLMRNKLS--------------GSIPPAISSLAQLQVLELWNN 342

Query:   238 SLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
             +L G +P++L + + L+ +D+S+N FSG IPS L N
Sbjct:   343 TLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCN 378

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 98/290 (33%), Positives = 142/290 (48%)

Query:     1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             +L  N+F G +P  L  L  ++ L++  NQL G  P  LT   +L+ LDLSS N  G   
Sbjct:   246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH 305

Query:    61 INSLANHSKLEVLLLSSG--SNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDH 117
                    ++LE L+L+    S  L  KT   + TS LK L LS+ QL   IP+ +     
Sbjct:   306 -EEFWRMNQLEFLVLAKNRLSGSLP-KTICSNNTS-LKQLFLSETQLSGEIPAEISNCQS 362

Query:   118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL-----DISGNIPNWIGNISTLRVLLM 172
             LK LDLS+N L G  P      D L     L  L      + G + + I N++ L+   +
Sbjct:   363 LKLLDLSNNTLTGQIP------DSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTL 416

Query:   173 SKNYLEANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQ 222
               N LE  +P ++  L  LE++ ++EN  S          ++L  +D   N+  G IP  
Sbjct:   417 YHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSS 476

Query:   223 INELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
             I  L +L  L LR N L G+IP  L    ++ ++DL++N  SGSIPS  G
Sbjct:   477 IGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG 526

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  125 bits (316), Expect = 2e-32
 Identities = 107/291 (36%), Positives = 153/291 (52%), Gaps = 31/291 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-TNFTSLEYLDLSSINFQGTF 59
           DLS  N  G +   +  L +++ +++ NNQLSG  P  + T  +SL YL+LS+ NF G+ 
Sbjct: 75  DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI 134

Query: 60  SINSLANHSKLEVLLLSSGSNMLQVKT-ESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDH 117
              S+ N   LE L LS+  NML  +        S LKVL L    L   IP+ L     
Sbjct: 135 PRGSIPN---LETLDLSN--NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 118 LKFLDLSHNKLVGNFPI-CGKMDDGLRSSTSLEGL-----DISGNIPNWIGNISTLRVLL 171
           L+FL L+ N+LVG  P   G+M        SL+ +     ++SG IP  IG +++L  L 
Sbjct: 190 LEFLTLASNQLVGQIPRELGQM-------KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPY 221
           +  N L   IP  L +LK+L+ + +++N LS           KLI+LDL DN   G IP 
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 222 QINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272
            + +L NL +L L  N+  G IP  L  L +L+++ L +N FSG IP  LG
Sbjct: 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (253), Expect = 4e-24
 Identities = 87/284 (30%), Positives = 134/284 (47%), Gaps = 25/284 (8%)

Query: 2   LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
           L SNNF G +P  L  L  L+VL +++N+ SG  P  L    +L  LDLS+ N  G    
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP- 373

Query: 62  NSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLKF 120
             L +   L  L+L S S   ++  +S      L+ ++L D      +PS   +   + F
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIP-KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS-----GNIPNWIGNISTLRVLLMSKN 175
           LD+S+N L G       ++       SL+ L ++     G +P+  G+   L  L +S+N
Sbjct: 433 LDISNNNLQGR------INSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRN 485

Query: 176 YLEANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQINE 225
                +P +L  L  L  + + EN LS           KL++LDL  N+  G+IP   +E
Sbjct: 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545

Query: 226 LSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS 269
           +  L  L L  N L G IP  L  +  L  +++S+N   GS+PS
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 8e-22
 Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 25/247 (10%)

Query: 38  TLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV 97
           T  N + +  +DLS  N  G  S +++     ++ + LS+      +  + +  +S L+ 
Sbjct: 64  TCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 98  LKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156
           L LS+      IP   +   +L+ LDLS+N L G  P     D G  S  SL+ LD+ GN
Sbjct: 123 LNLSNNNFTGSIPRGSIP--NLETLDLSNNMLSGEIP----NDIGSFS--SLKVLDLGGN 174

Query: 157 -----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS--------- 202
                IPN + N+++L  L ++ N L   IP +L  +KSL+ I +  N+LS         
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 203 -SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
            + L  LDL  N   G IP  +  L NL  L L  N L G IP  +  L KL  +DLS+N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 262 IFSGSIP 268
             SG IP
Sbjct: 295 SLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.4 bits (232), Expect = 2e-21
 Identities = 86/278 (30%), Positives = 124/278 (44%), Gaps = 35/278 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS N+  G +P+ +  L +L++L +F+N  +G  P  LT+   L+ L L S  F G   
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
            N L  H+ L VL LS+  N L  +                      IP  L    +L  
Sbjct: 350 KN-LGKHNNLTVLDLST--NNLTGE----------------------IPEGLCSSGNLFK 384

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN 180
           L L  N L G  P        LR    L+    SG +P+    +  +  L +S N L+  
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRR-VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 181 IPVQLNHLKSLELIDIFENSL---------SSKLITLDLRDNKFFGRIPYQINELSNLHV 231
           I  +   + SL+++ +  N           S +L  LDL  N+F G +P ++  LS L  
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503

Query: 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS 269
           L L  N L G IP+EL    KL  +DLS+N  SG IP+
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 6e-21
 Identities = 87/286 (30%), Positives = 132/286 (46%), Gaps = 39/286 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DL  NN  G +P  L +L +L+ L ++ N+LSG  P ++ +   L  LDLS  +  G   
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLK 119
              +     LE+L L S +N       +     +L+VL+L   +    IP  L + ++L 
Sbjct: 302 -ELVIQLQNLEILHLFS-NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA 179
            LDLS N L G  P               EGL  SGN          L  L++  N LE 
Sbjct: 360 VLDLSTNNLTGEIP---------------EGLCSSGN----------LFKLILFSNSLEG 394

Query: 180 NIPVQLNHLKSLELIDIFENSLSSKLIT----------LDLRDNKFFGRIPYQINELSNL 229
            IP  L   +SL  + + +NS S +L +          LD+ +N   GRI  +  ++ +L
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 230 HVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
            +L L  N   G +P +     +L  +DLS N FSG++P  LG++S
Sbjct: 455 QMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.7 bits (199), Expect = 5e-17
 Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 40/222 (18%)

Query: 66  NHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQD------HLK 119
           N S++  + LS G N+    + +      ++ + LS+ QL    S  +  D       L+
Sbjct: 67  NSSRVVSIDLS-GKNISGKISSAIFRLPYIQTINLSNNQL----SGPIPDDIFTTSSSLR 121

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTS-LEGLDISGN-----IPNWIGNISTLRVLLMS 173
           +L+LS+N   G+ P         R S   LE LD+S N     IPN IG+ S+L+VL + 
Sbjct: 122 YLNLSNNNFTGSIP---------RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172

Query: 174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLL 233
            N L   IP  L +L SLE               L L  N+  G+IP ++ ++ +L  + 
Sbjct: 173 GNVLVGKIPNSLTNLTSLEF--------------LTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
           L  N+L G IP E+  L  L  +DL  N  +G IPS LGN+ 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 204 KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIF 263
            L +++L  N   G IP  +  +++L VL L  NS  G IP  L QL  LRI++L+ N  
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 264 SGSIPSCLG 272
           SG +P+ LG
Sbjct: 503 SGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 150 GLD---ISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLI 206
           GLD   + G IPN I  +  L+ + +S N +  NIP  L  + SLE+             
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV------------- 470

Query: 207 TLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 247
            LDL  N F G IP  + +L++L +L L GNSL G +P  L
Sbjct: 471 -LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 197 FENSLSSKLIT-LDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRI 255
           F+++     I  L L +    G IP  I++L +L  + L GNS++G+IP  L  +  L +
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 256 MDLSNNIFSGSIPSCLGNVSFWR 278
           +DLS N F+GSIP  LG ++  R
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLR 493

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 11/84 (13%)

Query: 107 VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS-----GNIPNWI 161
            IP+ + +  HL+ ++LS N + GN P        L S TSLE LD+S     G+IP  +
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPP------SLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 162 GNISTLRVLLMSKNYLEANIPVQL 185
           G +++LR+L ++ N L   +P  L
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 145 STSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSK 204
           S +L G  I GNIP  +G+I++L VL +S N    +IP  L  L SL ++++  NSLS +
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 205 L 205
           +
Sbjct: 506 V 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L +    G +P  ++ L HL+ +++  N + GN P +L + TSLE LDLS  +F G+  
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 61  INSLANHSKLEVLLLSSGS 79
             SL   + L +L L+  S
Sbjct: 484 -ESLGQLTSLRILNLNGNS 501

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 45/137 (32%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L+ N F G LP        L+ LD+  NQ SG  P  L + + L  L LS     G   
Sbjct: 458 SLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLK 119
            + L++  KL  L LS      Q+   S+     L  L LS  QL   IP  L   + L 
Sbjct: 517 -DELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574

Query: 120 FLDLSHNKLVGNFPICG 136
            +++SHN L G+ P  G
Sbjct: 575 QVNISHNHLHGSLPSTG 591

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 30/256 (11%)

Query: 18  LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSS 77
           L+ L  LD+ +     +   +      L    L     +   +I+ L   + L  L L +
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDN 125

Query: 78  GSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGK 137
            +N+  +        S LK L LSD ++  +PS L    +LK LDLS N L     +   
Sbjct: 126 -NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184

Query: 138 MDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLEL 193
                   ++L  LD+SGN    +P  I  +S L  L +S N +   +   L++LK+L  
Sbjct: 185 -------LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236

Query: 194 IDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKL 253
           +++  N L                 +P  I  LSNL  L L  N +     + L  L  L
Sbjct: 237 LELSNNKLED---------------LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNL 279

Query: 254 RIMDLSNNIFSGSIPS 269
           R +DLS N  S ++P 
Sbjct: 280 RELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTL 39
           DLS N+F G +P+ L  LT L++L++  N LSG  P+ L
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
PLN03150	623	hypothetical protein; Provisional	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.81
PLN03150	623	hypothetical protein; Provisional	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.59
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.58
KOG4341	483	consensus F-box protein containing LRR [General fu	98.49
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.1
KOG4341	483	consensus F-box protein containing LRR [General fu	98.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.99
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.88
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.72
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.1
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.87
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.47
KOG4308	478	consensus LRR-containing protein [Function unknown	95.44
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.15
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.26
smart00370	26	LRR Leucine-rich repeats, outliers.	91.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.9
KOG4308	478	consensus LRR-containing protein [Function unknown	90.5
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.18
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.26
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.13
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.85

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=5e-30  Score=239.68  Aligned_cols=268  Identities=34%  Similarity=0.489  Sum_probs=140.5

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      |++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.. +..+.++++|++|++++|...
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccC
Confidence            4555555556666666666666666666665556666666666666666666554322 244555666666666655433


Q ss_pred             ccccCCCCCCCCceeEEEecCCcC-cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----  156 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----  156 (279)
                      ... +..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.+.      .+..+..+++|+.|++++|    
T Consensus       226 ~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        226 GEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP------IPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcC-ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc------CchhHhhccCcCEEECcCCeecc
Confidence            222 23345566666666666655 34555555666666666666555422      2234445555555555544    


Q ss_pred             -CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhc
Q 044855          157 -IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINE  225 (279)
Q Consensus       157 -~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~  225 (279)
                       .|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+..          +|+.|++++|++.+.+|..+..
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  378 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS  378 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence             33344455555555555555544444445555555555555554431          4445555555544444444444


Q ss_pred             CcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855          226 LSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW  277 (279)
Q Consensus       226 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l  277 (279)
                      +++|+.+++++|.+.+..|..+..+++|+.|++++|.+++.+|..|..++.|
T Consensus       379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  430 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV  430 (968)
T ss_pred             cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence            4444444444444444444444444455555555555544444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=4.3e-30  Score=240.14  Aligned_cols=274  Identities=36%  Similarity=0.528  Sum_probs=172.1

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccc-cCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-TNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      ||+++.+.+.++.+|+.+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..+.   ..+++|++|++++|.
T Consensus        75 ~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~  151 (968)
T PLN00113         75 DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM  151 (968)
T ss_pred             EecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCc
Confidence            467788888888888888888888888888877777654 4788888888888877643332   334566666666554


Q ss_pred             ccccccCCCCCCCCceeEEEecCCcC-cccChhhhcCCCccEEEeeCCcccccCCC------------------CCcCcc
Q 044855           80 NMLQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPI------------------CGKMDD  140 (279)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~  140 (279)
                      ..... +..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.+..|.                  ....+.
T Consensus       152 ~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  230 (968)
T PLN00113        152 LSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY  230 (968)
T ss_pred             ccccC-ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence            32222 23345556666666666554 34455555555666666655554422110                  012334


Q ss_pred             hhhccCcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cc
Q 044855          141 GLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KL  205 (279)
Q Consensus       141 ~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L  205 (279)
                      .+..+++|++|+++++     .|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+..          +|
T Consensus       231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            4555556666665544     34455556666666666666655555556666666666666665432          56


Q ss_pred             eEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          206 ITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       206 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      +.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|+.++.++.|+
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  383 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF  383 (968)
T ss_pred             cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence            6667777766666666666677777777777777666777777777777777777777777777666655543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-28  Score=202.59  Aligned_cols=266  Identities=25%  Similarity=0.267  Sum_probs=182.2

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      |||.|.|+.+.-..|..-.++++|+|++|.|+..-..+|.++.+|.+|.++.|.++ ..+...|+++++|+.|++..|.+
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence            45556666555555655566666666666666555555666666666666666665 55555666666666666655542


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC---
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---  156 (279)
                       ....--.|+++++|+.+.+..|++..+.. .+..+.+++.|+++.|.+..      --...+.++++|+.|+++.|   
T Consensus       234 -rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  234 -RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------VNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             -eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------hhcccccccchhhhhccchhhhh
Confidence             22223345666666666666666665554 34456777777777776652      22356677777777777776   


Q ss_pred             --CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCC---CCch
Q 044855          157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFG---RIPY  221 (279)
Q Consensus       157 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~---~~~~  221 (279)
                        .++...-+++|++|+++.|.++...+..|..+..|+.|++++|.+..          +|+.|+++.|.+..   ....
T Consensus       307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~  386 (873)
T KOG4194|consen  307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV  386 (873)
T ss_pred             eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence              23445566778888888888877677777777888888888887654          88888888888743   3345


Q ss_pred             hhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCC
Q 044855          222 QINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNV  274 (279)
Q Consensus       222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  274 (279)
                      .|..+++|+.|.+.||++....-..|.+++.|+.||+.+|.+...-|.+|..+
T Consensus       387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            67788999999999999986666788889999999999999887888888876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-28  Score=204.15  Aligned_cols=272  Identities=24%  Similarity=0.294  Sum_probs=172.0

Q ss_pred             CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855            4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ   83 (279)
Q Consensus         4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   83 (279)
                      .|.++ .+|....-..+|+.|+|.+|.|+......+.-++.|++||++.|.++ .++...+..-.++++|+++.|. +..
T Consensus       111 ~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~-It~  187 (873)
T KOG4194|consen  111 KNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNR-ITT  187 (873)
T ss_pred             cchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccc-ccc
Confidence            34444 44444444444555555555554433344444555555555555444 3333444444445555554443 333


Q ss_pred             ccCCCCCCCCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCC------------------CCcCcchhhc
Q 044855           84 VKTESWHPTSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPI------------------CGKMDDGLRS  144 (279)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~~~~~  144 (279)
                      +....|..+.+|.+|.++.|.++.+|.. +.++++|+.|++..|.+......                  ...-...|..
T Consensus       188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~  267 (873)
T KOG4194|consen  188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG  267 (873)
T ss_pred             cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence            3344444444455555555555444432 22244455454444443311000                  0122346677


Q ss_pred             cCcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEE
Q 044855          145 STSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLD  209 (279)
Q Consensus       145 ~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~  209 (279)
                      +.++++|+++.|     -..++.++++|+.|+++.|.+...-+..+..+++|++|+++.|.++.          .|+.|+
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence            778888888766     23456678899999999999988788888899999999999998875          788999


Q ss_pred             eecCccCCCCchhhhcCcCCcEEEccCCcccccC---ChhhhcccCCcEEEccCCEeeeecC-ccccCCccccC
Q 044855          210 LRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI---PNELCQLAKLRIMDLSNNIFSGSIP-SCLGNVSFWRE  279 (279)
Q Consensus       210 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~  279 (279)
                      ++.|++......+|..+++|+.||+++|.+...+   ...|.++++|+.|++.||++. .+| .+|..++.|++
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEH  420 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccce
Confidence            9999998777778888999999999999876543   446778999999999999998 555 58888887764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=4.1e-25  Score=185.43  Aligned_cols=264  Identities=26%  Similarity=0.412  Sum_probs=158.9

Q ss_pred             CCCCCcCc-CCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccC-----------------------
Q 044855            1 DLSSNNFE-GHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ-----------------------   56 (279)
Q Consensus         1 ~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------   56 (279)
                      |+++|.++ +.-|.....+.+++.|.|...++. .+|..+..+.+|++|.+.+|++.                       
T Consensus        13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK   91 (1255)
T KOG0444|consen   13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK   91 (1255)
T ss_pred             cccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc
Confidence            56777777 455666666666666666666655 56666666666666666555543                       


Q ss_pred             cccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhh-cCCCccEEEeeCCcccccCCCC
Q 044855           57 GTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLL-QQDHLKFLDLSHNKLVGNFPIC  135 (279)
Q Consensus        57 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~  135 (279)
                      ..-.+..+..+..|..|++++|+. .+.| ..+....++-+|++++|.|+.+|..++ ++.-|-.|++++|++.      
T Consensus        92 nsGiP~diF~l~dLt~lDLShNqL-~EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe------  163 (1255)
T KOG0444|consen   92 NSGIPTDIFRLKDLTILDLSHNQL-REVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE------  163 (1255)
T ss_pred             cCCCCchhcccccceeeecchhhh-hhcc-hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh------
Confidence            222233445555556666655542 2222 223444555566666666666655333 3455555555555554      


Q ss_pred             CcCcchhhccCcccceeccCC------------------------------CCccccCCCCCcEEEccccEeeeeccccc
Q 044855          136 GKMDDGLRSSTSLEGLDISGN------------------------------IPNWIGNISTLRVLLMSKNYLEANIPVQL  185 (279)
Q Consensus       136 ~~~~~~~~~~~~L~~l~l~~~------------------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~l  185 (279)
                       .++..+..+..|+.|+++++                              +|..+..+.+|+.++++.|.+.. .|..+
T Consensus       164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecl  241 (1255)
T KOG0444|consen  164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECL  241 (1255)
T ss_pred             -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHH
Confidence             34444455555555555543                              45555566677888888887776 77788


Q ss_pred             cCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc----------------
Q 044855          186 NHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ----------------  240 (279)
Q Consensus       186 ~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~----------------  240 (279)
                      ..+++|+.|++++|.++.         +|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++                
T Consensus       242 y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence            888888888888888775         7888888888774 45666666666665555555533                


Q ss_pred             --------ccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855          241 --------GHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW  277 (279)
Q Consensus       241 --------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l  277 (279)
                              +.+|+.++.|+.|+.|.++.|++. ++|+++.-++-|
T Consensus       321 f~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l  364 (1255)
T KOG0444|consen  321 FHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL  364 (1255)
T ss_pred             HHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence                    145555666666666666666655 566666555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=1.6e-24  Score=181.97  Aligned_cols=258  Identities=24%  Similarity=0.356  Sum_probs=165.7

Q ss_pred             CCcCcCCCCccccCCCCccEEEeeCCccc-ccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855            4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML   82 (279)
Q Consensus         4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   82 (279)
                      +|++. .+...++.+|.|+.+.++.|.+. +-+|..+..+..|.+|++++|++. .. +..+....++-+|++++|. +.
T Consensus        64 HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev-P~~LE~AKn~iVLNLS~N~-Ie  139 (1255)
T KOG0444|consen   64 HNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV-PTNLEYAKNSIVLNLSYNN-IE  139 (1255)
T ss_pred             hhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc-chhhhhhcCcEEEEcccCc-cc
Confidence            44444 34445556666666666666553 234555566777777777777664 22 2445555666667776664 45


Q ss_pred             cccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccc----cCC---------------CCCcCcchhh
Q 044855           83 QVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVG----NFP---------------ICGKMDDGLR  143 (279)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~---------------~~~~~~~~~~  143 (279)
                      .+|...|-+++.|-.|++++|.++.+|..+.++..|+.|.+++|.+.-    ..|               ....++.++.
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence            566666666666666677777666666666666666666666665320    000               0234455666


Q ss_pred             ccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------------
Q 044855          144 SSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------------  203 (279)
Q Consensus       144 ~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------------  203 (279)
                      .+.+|..+|++.+    +|+.+..+++|+.|++++|.++. .......+.+|+.|+++.|+++.                
T Consensus       220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence            6777777777755    45556666777777777776665 22333445555666666665543                


Q ss_pred             ------------------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855          204 ------------------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       204 ------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  265 (279)
                                        +|+.+..++|.+ +.+|+.++.|+.|+.|.++.|++- ..|+.+.-++.|+.||++.|+-. 
T Consensus       299 n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-  375 (1255)
T KOG0444|consen  299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-  375 (1255)
T ss_pred             ccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-
Confidence                              455555555554 467888899999999999999987 78999999999999999999966 


Q ss_pred             ecCc
Q 044855          266 SIPS  269 (279)
Q Consensus       266 ~~p~  269 (279)
                      .+|+
T Consensus       376 VMPP  379 (1255)
T KOG0444|consen  376 VMPP  379 (1255)
T ss_pred             cCCC
Confidence            4554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=1.4e-23  Score=167.44  Aligned_cols=102  Identities=28%  Similarity=0.418  Sum_probs=78.2

Q ss_pred             ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855          161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHV  231 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~  231 (279)
                      +..+++|..|++++|.+.+ .|..++.+-.|+.++++.|.+..         .++.+-.++|++...-+..+..|.+|++
T Consensus       431 l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             HHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            3456677777777776665 66666677777777777776653         4555566667775544555888999999


Q ss_pred             EEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855          232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      ||+.+|.+. .+|..+++|.+|+.|++.||+++
T Consensus       510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999999998 88889999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=2.3e-23  Score=166.20  Aligned_cols=179  Identities=26%  Similarity=0.374  Sum_probs=95.8

Q ss_pred             CCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCC
Q 044855           10 HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESW   89 (279)
Q Consensus        10 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   89 (279)
                      .+|.++..++++..++.+.|.+. ..++.+..+..+..++..+|+++ .. +..+.++.++..+++.++. ....+...+
T Consensus       105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-sl-p~~~~~~~~l~~l~~~~n~-l~~l~~~~i  180 (565)
T KOG0472|consen  105 ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SL-PEDMVNLSKLSKLDLEGNK-LKALPENHI  180 (565)
T ss_pred             hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cC-chHHHHHHHHHHhhccccc-hhhCCHHHH
Confidence            33444444444444444444433 33333334444444444444333 11 1334444455555554443 222222222


Q ss_pred             CCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccc-cCC
Q 044855           90 HPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWI-GNI  164 (279)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~-~~~  164 (279)
                      . ++.|++++...|.++.+|..+..+.+|+.|++.+|++.       .++ .|.++..|++++++.+    +|... ..+
T Consensus       181 ~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-------~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L  251 (565)
T KOG0472|consen  181 A-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-------FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHL  251 (565)
T ss_pred             H-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-------cCC-CCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence            3 66777788877777888888888888888888888765       333 5566666666666655    22222 245


Q ss_pred             CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  202 (279)
                      +++.+||+.+|.+++ .|..+.-+++|+.||+++|.++
T Consensus       252 ~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             ccceeeecccccccc-CchHHHHhhhhhhhcccCCccc
Confidence            666666666666655 5555555566666666666554

>PLN03210 Resistant to P

Probab=99.83  E-value=2.3e-19  Score=169.38  Aligned_cols=115  Identities=25%  Similarity=0.340  Sum_probs=59.6

Q ss_pred             CcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc-------ccceEEEeecC
Q 044855          146 TSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS-------SKLITLDLRDN  213 (279)
Q Consensus       146 ~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-------~~L~~L~l~~~  213 (279)
                      ++|+.|+++++     +|..++++++|+.|++++|.....+|... .+++|+.|++++|...       .+++.|++++|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence            34555555544     44555555666666666553222233332 4555666666554321       14555666665


Q ss_pred             ccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855          214 KFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       214 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      .+. .+|..+..+++|+.|++++|.-...++..+..++.|+.+++++|.
T Consensus       857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            553 345555556666666666544222344445555566666666664

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=6.5e-19  Score=156.52  Aligned_cols=244  Identities=24%  Similarity=0.291  Sum_probs=157.0

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      |++++.++ .+|..+.  ++|+.|.+.+|.++ .+|.   ..++|++|++++|.++ .++.    ..++|+.|++++|..
T Consensus       207 dLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        207 NVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPL  274 (788)
T ss_pred             EcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceeeccCCch
Confidence            57788888 5666554  47999999999988 5664   3588999999999887 3331    235778888877753


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCc---------chhh-ccCcccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMD---------DGLR-SSTSLEG  150 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~~~-~~~~L~~  150 (279)
                       ..++.    ...+|+.|++.+|.+..+|..   .++|+.|++++|.+.........+.         ..+. -..+|+.
T Consensus       275 -~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~  346 (788)
T PRK15387        275 -THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQE  346 (788)
T ss_pred             -hhhhh----chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccce
Confidence             22221    124566777777777666642   3567777777776653211000000         0000 0135666


Q ss_pred             eeccCCCCcccc-CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCchhh
Q 044855          151 LDISGNIPNWIG-NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQI  223 (279)
Q Consensus       151 l~l~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~~~~  223 (279)
                      |++++|-...+. ...+|+.|++++|.+.. +|..   .++|+.|++++|.+..      +|+.|++++|.+.. +|.. 
T Consensus       347 LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss-IP~l-  420 (788)
T PRK15387        347 LSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPML-  420 (788)
T ss_pred             EecCCCccCCCCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcCCC-CCcc-
Confidence            666655222221 12355666666666654 3332   2467888888887653      78888888888754 4543 


Q ss_pred             hcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855          224 NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN  273 (279)
Q Consensus       224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  273 (279)
                        ..+|+.|++++|+++ .+|..++.++.|+.|++++|++++..|..+..
T Consensus       421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence              246788999999998 78888999999999999999999888876644

>PLN03210 Resistant to P

Probab=99.80  E-value=2.4e-18  Score=162.54  Aligned_cols=258  Identities=21%  Similarity=0.255  Sum_probs=199.6

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      +++++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|......+ ..+..+++|+.|++++|..
T Consensus       617 ~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        617 QMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             ECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCC
Confidence            46778887 6778889999999999998765546765 7889999999999997653443 5788999999999999887


Q ss_pred             cccccCCCCCCCCceeEEEecCCcC-cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC--
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI--  157 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--  157 (279)
                      ...++...  .+++|+.|++++|.. +.+|..   ..+|++|+++++.+..       ++..+ .+++|++|++.++.  
T Consensus       694 L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-------lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        694 LEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-------FPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             cCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-------ccccc-cccccccccccccchh
Confidence            77776542  688999999999854 555542   4679999999988652       22222 46777777776521  


Q ss_pred             ----------CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc---------ccceEEEeecCccCCC
Q 044855          158 ----------PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS---------SKLITLDLRDNKFFGR  218 (279)
Q Consensus       158 ----------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~---------~~L~~L~l~~~~~~~~  218 (279)
                                +......++|+.|++++|.....+|..+.++++|+.|++++|..-         .+|+.|++++|.....
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence                      111223478999999999766668888999999999999987521         2789999999976665


Q ss_pred             CchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          219 IPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       219 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      +|..   ..+|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..++.|+
T Consensus       841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~  896 (1153)
T PLN03210        841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE  896 (1153)
T ss_pred             cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence            5543   368999999999998 7888999999999999999885557888777766654

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.76  E-value=4.9e-21  Score=152.51  Aligned_cols=125  Identities=22%  Similarity=0.306  Sum_probs=90.7

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccC-cccCcccchhhhcccccceeeeecCCcc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSS-INFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      |..|.|+.+++.+|+.+++|+.|+|++|.|+..-|++|++++.+.+|.+.+ |.|+ .++...|.++..++.|.+..+. 
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~-  151 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANH-  151 (498)
T ss_pred             eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhh-
Confidence            456777777778888888888888888888777777888888887777666 6665 6666777777777777765443 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKL  128 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  128 (279)
                      ...+..+.+..++++..|.+.+|.++.++. .+..+..++.+++..|.+
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            445555667777778888888887777765 555667777777777663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=1.8e-19  Score=148.61  Aligned_cols=259  Identities=25%  Similarity=0.264  Sum_probs=165.2

Q ss_pred             CCCCCcCc-CCCCccccCCCCccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCc--c---cchhhhcccccc
Q 044855            1 DLSSNNFE-GHLPQCLNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQG--T---FSINSLANHSKL   70 (279)
Q Consensus         1 ~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~--~---~~~~~~~~~~~L   70 (279)
                      +|..+.+. ...+..+..+++|++|+++++.++.    .++..+...+.+++++++++.+..  .   .....+..+++|
T Consensus         4 ~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L   83 (319)
T cd00116           4 SLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL   83 (319)
T ss_pred             ccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence            45666666 3445666778889999999998853    345556778889999999987652  1   112345678899


Q ss_pred             eeeeecCCcccccccCCCCCCC---CceeEEEecCCcCc-----ccChhhhcC-CCccEEEeeCCcccccCCCCCcCcch
Q 044855           71 EVLLLSSGSNMLQVKTESWHPT---SQLKVLKLSDCQLH-----VIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDG  141 (279)
Q Consensus        71 ~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~-----~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~  141 (279)
                      +.|+++++...... ...+..+   ++|++|++++|.+.     .+...+..+ ++|++|++++|.+.....  ..+...
T Consensus        84 ~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~~~~~  160 (319)
T cd00116          84 QELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC--EALAKA  160 (319)
T ss_pred             eEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH--HHHHHH
Confidence            99999887653211 1122222   55999999998875     223345566 889999999998763211  133445


Q ss_pred             hhccCcccceeccCCCCc---------cccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcc-----
Q 044855          142 LRSSTSLEGLDISGNIPN---------WIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSS-----  203 (279)
Q Consensus       142 ~~~~~~L~~l~l~~~~~~---------~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~-----  203 (279)
                      +..+..|++++++++-..         .+...++|+.|++++|.+.+.    .+..+..+++|+.|++++|.+.+     
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            666778888888877322         233456888888888877542    23345667778888887776552     


Q ss_pred             ----------cceEEEeecCccCCC----CchhhhcCcCCcEEEccCCccccc----CChhhhcc-cCCcEEEccCCE
Q 044855          204 ----------KLITLDLRDNKFFGR----IPYQINELSNLHVLLLRGNSLQGH----IPNELCQL-AKLRIMDLSNNI  262 (279)
Q Consensus       204 ----------~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~  262 (279)
                                .|+.|++++|.+++.    +...+..+++|+.+++++|.+++.    ..+.+... +.|+.+++.+|+
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence                      566666666666422    222334456666777777666644    22233333 456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.74  E-value=8e-20  Score=145.68  Aligned_cols=251  Identities=18%  Similarity=0.217  Sum_probs=169.9

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      +...+|.|..|+|+...+.+|+.+++|+.|+|++|.|+ .+.+..|..+..+..|-+.++..+..++...|+++..++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            45788999999999888889999999999999999998 77779999999999888888777899999999999999999


Q ss_pred             EecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC------Ccc-----------
Q 044855           99 KLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI------PNW-----------  160 (279)
Q Consensus        99 ~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~------~~~-----------  160 (279)
                      .+..|.+.-+. ..+..++++..|.+.+|.+....      ...+..+.+++.+.+..+-      ..|           
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~------~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie  219 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC------KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE  219 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhc------cccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence            99999886554 46778899999999999876322      2366777777777766431      011           


Q ss_pred             ccCCCCCcEEEccccEeeeeccccccCCCCccEE--eccCCcCc------------ccceEEEeecCccCCCCchhhhcC
Q 044855          161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELI--DIFENSLS------------SKLITLDLRDNKFFGRIPYQINEL  226 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l--~l~~~~~~------------~~L~~L~l~~~~~~~~~~~~~~~~  226 (279)
                      ++...-.....+....+....+..+..  .++.+  .++.....            ++|+.|++++|+++++-..+|.+.
T Consensus       220 tsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  220 TSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             cccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence            111111111111111111111111100  01111  00111100            156666777777777777777777


Q ss_pred             cCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ..+++|.+..|++...-..+|.++..|+.|++.+|+++...|.+|..+.+|.
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            7777888877777655556677777777788888887777777777666553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.72  E-value=3.1e-19  Score=155.77  Aligned_cols=255  Identities=25%  Similarity=0.299  Sum_probs=162.7

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      +..|.+.+..+..+..+.+  .|+|+.|.+. .  ..+.++++|+.+....|.+..     .-..-+.++.|..++|...
T Consensus       163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~-----l~~~g~~l~~L~a~~n~l~  232 (1081)
T KOG0618|consen  163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSE-----LEISGPSLTALYADHNPLT  232 (1081)
T ss_pred             hhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccce-----EEecCcchheeeeccCcce
Confidence            4445555555555555555  5666666654 1  234566666666666665541     1123356777777777644


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----C
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----I  157 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~  157 (279)
                      ....   -..-.+|++++++.+.+..+|.++..+++|+.+....|.+.       .++..+....+|+++.+..|    +
T Consensus       233 ~~~~---~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-------~lp~ri~~~~~L~~l~~~~nel~yi  302 (1081)
T KOG0618|consen  233 TLDV---HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-------ALPLRISRITSLVSLSAAYNELEYI  302 (1081)
T ss_pred             eecc---ccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-------hhHHHHhhhhhHHHHHhhhhhhhhC
Confidence            2111   12235899999999999999999999999999999999886       66678888888999888766    6


Q ss_pred             CccccCCCCCcEEEccccEeeeeccccccCCCC-ccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcC
Q 044855          158 PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS-LELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINEL  226 (279)
Q Consensus       158 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~  226 (279)
                      +........|++|++..|.+.......+..... ++.++.+.+.+..          .|+.|++.+|.+++.....+.++
T Consensus       303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~  382 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF  382 (1081)
T ss_pred             CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence            667777889999999999887733333333332 4444444444332          45566666666666555555666


Q ss_pred             cCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855          227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW  277 (279)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l  277 (279)
                      ++|+.|++++|++.......+.+++.|++|+++||+++ .+|++...++.|
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL  432 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence            66666666666665444445555566666666666666 555555555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=8e-17  Score=143.89  Aligned_cols=231  Identities=21%  Similarity=0.341  Sum_probs=162.2

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.++ .+|..+.  ++++.|++++|+++ .+|..+.  ++|++|++++|.+. .++. .+  ...|+.|++++|.. 
T Consensus       185 L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l--~~~L~~L~Ls~N~L-  253 (754)
T PRK15370        185 LKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TL--PDTIQEMELSINRI-  253 (754)
T ss_pred             eCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hh--hccccEEECcCCcc-
Confidence            4566666 3454442  57899999999988 5665543  58999999999886 3332 22  24789999988864 


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI  161 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  161 (279)
                      ..++...   ..+|+.|++++|.+..+|..+.  ++|+.|++++|.+...       +..+  ...|+.|++++|-...+
T Consensus       254 ~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L-------P~~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        254 TELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL-------PAHL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             CcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccC-------cccc--hhhHHHHHhcCCccccC
Confidence            3444332   2478999999999888886553  5799999999987632       2222  24688888887732222


Q ss_pred             c--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEE
Q 044855          162 G--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVL  232 (279)
Q Consensus       162 ~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  232 (279)
                      .  ..++|+.|++++|.++. +|..+  .++|+.|++++|.+..       +|+.|++++|.+.. +|..+.  ..|+.|
T Consensus       320 P~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-LP~~l~--~sL~~L  393 (754)
T PRK15370        320 PETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-LPENLP--AALQIM  393 (754)
T ss_pred             CccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-CCHhHH--HHHHHH
Confidence            1  23689999999998877 55444  3689999999887652       78899999998864 555443  368889


Q ss_pred             EccCCcccccCChhhh----cccCCcEEEccCCEee
Q 044855          233 LLRGNSLQGHIPNELC----QLAKLRIMDLSNNIFS  264 (279)
Q Consensus       233 ~l~~n~~~~~~~~~~~----~~~~L~~L~l~~n~l~  264 (279)
                      ++++|++. .+|..+.    ..+.+..|++.+|+++
T Consensus       394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            99999987 5555443    3477888999999875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=9.6e-18  Score=138.33  Aligned_cols=242  Identities=22%  Similarity=0.204  Sum_probs=171.0

Q ss_pred             EEEeeCCccc-ccCCccccCCCcCcEEeccCcccCccc---chhhhcccccceeeeecCCcccc-----cccCCCCCCCC
Q 044855           23 VLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTF---SINSLANHSKLEVLLLSSGSNML-----QVKTESWHPTS   93 (279)
Q Consensus        23 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~   93 (279)
                      .|+|..+.++ ......|..+++|+.++++++.+.+..   ....+...+.+++++++++....     ......+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4566666665 344455677888999999999886321   12345667789999998775431     11123456688


Q ss_pred             ceeEEEecCCcCc-ccChhhhcC---CCccEEEeeCCcccccCCCCCcCcchhhcc-CcccceeccCCCCc---------
Q 044855           94 QLKVLKLSDCQLH-VIPSFLLQQ---DHLKFLDLSHNKLVGNFPICGKMDDGLRSS-TSLEGLDISGNIPN---------  159 (279)
Q Consensus        94 ~L~~L~l~~~~~~-~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~---------  159 (279)
                      +|+.|++++|.+. ..+..+..+   ++|++|++++|.+.+...  ..+...+..+ ++|+.++++++-..         
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            9999999999885 334444444   449999999998753211  1233445566 89999999988322         


Q ss_pred             cccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCCCch
Q 044855          160 WIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGRIPY  221 (279)
Q Consensus       160 ~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~~~~  221 (279)
                      .+..+++|++|++++|.+++.    .+..+...++|+.|++++|.+.+              +|++|++++|.+.+....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            345667899999999988742    33345667899999999998753              699999999998764333


Q ss_pred             hhh-c----CcCCcEEEccCCccccc----CChhhhcccCCcEEEccCCEeeee
Q 044855          222 QIN-E----LSNLHVLLLRGNSLQGH----IPNELCQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       222 ~~~-~----~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~  266 (279)
                      .+. .    .+.|++|++++|.+++.    ....+..+++|+.+++++|.++..
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            332 2    37899999999998733    344556678999999999999844

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=8e-16  Score=137.59  Aligned_cols=223  Identities=24%  Similarity=0.315  Sum_probs=165.4

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      .+.+.|++.+++++ .+|..+  .++|+.|++++|.+. ..+...   ..+|+.|++++|.. ..++..   ...+|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~L-tsLP~~---l~~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENL---QGNIKTLYANSNQL-TSIPAT---LPDTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCcc-ccCChh---hhccccEE
Confidence            45788999999988 567655  358999999999987 444322   25899999998863 344432   12479999


Q ss_pred             EecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcccc--CCCCCcEEEccccE
Q 044855           99 KLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIG--NISTLRVLLMSKNY  176 (279)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~L~~L~l~~~~  176 (279)
                      ++++|.+..+|..+.  .+|+.|++++|.+..       ++..+  ..+|+.|++++|-...+.  ..++|+.|++++|.
T Consensus       247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~-------LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~  315 (754)
T PRK15370        247 ELSINRITELPERLP--SALQSLDLFHNKISC-------LPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS  315 (754)
T ss_pred             ECcCCccCcCChhHh--CCCCEEECcCCccCc-------ccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence            999999999987654  579999999998863       22222  247999999988332221  12478999999999


Q ss_pred             eeeeccccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhc
Q 044855          177 LEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQ  249 (279)
Q Consensus       177 l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  249 (279)
                      ++. +|..+  .++|+.|++++|.+..       +|+.|++++|++. .+|..+.  ++|+.|++++|.++ .+|..+. 
T Consensus       316 Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-  387 (754)
T PRK15370        316 LTA-LPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-  387 (754)
T ss_pred             ccc-CCccc--cccceeccccCCccccCChhhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence            886 45433  3689999999987653       8999999999986 4565443  68999999999998 5565554 


Q ss_pred             ccCCcEEEccCCEeeeecCccccC
Q 044855          250 LAKLRIMDLSNNIFSGSIPSCLGN  273 (279)
Q Consensus       250 ~~~L~~L~l~~n~l~~~~p~~~~~  273 (279)
                       +.|+.|++++|.++ .+|+.+.+
T Consensus       388 -~sL~~LdLs~N~L~-~LP~sl~~  409 (754)
T PRK15370        388 -AALQIMQASRNNLV-RLPESLPH  409 (754)
T ss_pred             -HHHHHHhhccCCcc-cCchhHHH
Confidence             36899999999998 77765443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=3.4e-15  Score=133.07  Aligned_cols=221  Identities=22%  Similarity=0.246  Sum_probs=143.2

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      ..-..|+++++.++ .+|..+.  ++|+.|++.+|.++ .++.    ..++|++|++++|.. ..++.    ..++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~L-tsLP~----lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQL-TSLPV----LPPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCcc-CcccC----ccccccee
Confidence            44678999999998 6787664  48999999999887 3331    357899999998864 34442    24689999


Q ss_pred             EecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccC-CC------------
Q 044855           99 KLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGN-IS------------  165 (279)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~------------  165 (279)
                      ++.+|.+..+|..   ..+|+.|++++|.+...       +.   .+++|+.|++++|-...+.. ..            
T Consensus       268 ~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~L-------P~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        268 SIFSNPLTHLPAL---PSGLCKLWIFGNQLTSL-------PV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL  334 (788)
T ss_pred             eccCCchhhhhhc---hhhcCEEECcCCccccc-------cc---cccccceeECCCCccccCCCCcccccccccccCcc
Confidence            9999999887753   36788999999987632       21   23567888887762222211 12            


Q ss_pred             --------CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855          166 --------TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQINELSNLHV  231 (279)
Q Consensus       166 --------~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~L~~  231 (279)
                              +|+.|++++|.++. +|..   .++|+.|++++|.+..      +|+.|++++|++.+ +|..   .++|+.
T Consensus       335 ~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~  406 (788)
T PRK15387        335 TSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKE  406 (788)
T ss_pred             ccccccccccceEecCCCccCC-CCCC---CcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCE
Confidence                    34555555555444 2221   1344445555554432      56666776666643 3322   246777


Q ss_pred             EEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      |++++|.++ .+|..   ..+|+.|++++|.++ .+|+.++.++.|+
T Consensus       407 LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        407 LMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSET  448 (788)
T ss_pred             EEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence            777777776 34432   235777888888887 7888888777664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=5.2e-18  Score=148.27  Aligned_cols=230  Identities=27%  Similarity=0.329  Sum_probs=127.4

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      .+|++++++.+.++ .+|..+..+.+|+.++...|.+. .. +..+...+.|+.|.+..|.. ..++. ...+...|++|
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~l-p~ri~~~~~L~~l~~~~nel-~yip~-~le~~~sL~tL  315 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-AL-PLRISRITSLVSLSAAYNEL-EYIPP-FLEGLKSLRTL  315 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hh-HHHHhhhhhHHHHHhhhhhh-hhCCC-cccccceeeee
Confidence            45677777777776 45566677777777777777663 22 23444556666666655542 22222 23456667777


Q ss_pred             EecCCcCcccChhhhcC--CCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCCCCcEEE
Q 044855           99 KLSDCQLHVIPSFLLQQ--DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLL  171 (279)
Q Consensus        99 ~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~  171 (279)
                      ++..|.+..+|..+..-  ..++.++.+.+.+....      ...=..++.|+.|.+.+|     +...+.+..+|+.|+
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhccccccc------cccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            77777776666533221  12444444444433111      011122334555555444     233445556666666


Q ss_pred             ccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccccc
Q 044855          172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGH  242 (279)
Q Consensus       172 l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (279)
                      ++.|++.......+.++..|+.|++++|.++.         .|++|...+|.+. .+| .+..++.|+.+|++.|+++..
T Consensus       390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  390 LSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             ecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence            66666655344455666666666666666543         5556666666653 345 566677777777777776633


Q ss_pred             C-ChhhhcccCCcEEEccCCE
Q 044855          243 I-PNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       243 ~-~~~~~~~~~L~~L~l~~n~  262 (279)
                      . +... ..|+|++||++||.
T Consensus       468 ~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  468 TLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhC-CCcccceeeccCCc
Confidence            2 2222 22677777777776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=2.3e-17  Score=117.68  Aligned_cols=166  Identities=27%  Similarity=0.438  Sum_probs=113.1

Q ss_pred             cccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855           65 ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS  144 (279)
Q Consensus        65 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  144 (279)
                      ..+..+..|.++++.. ..+++ .+..+.+|+.|++.+|.++++|..++++++|+.|+++-|++.               
T Consensus        30 f~~s~ITrLtLSHNKl-~~vpp-nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---------------   92 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKL-TVVPP-NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---------------   92 (264)
T ss_pred             cchhhhhhhhcccCce-eecCC-cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---------------
Confidence            3344444455555542 22222 245667777777777878888888888888888877766654               


Q ss_pred             cCcccceeccCCCCccccCCCCCcEEEccccEeee-eccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhh
Q 044855          145 STSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA-NIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQI  223 (279)
Q Consensus       145 ~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~  223 (279)
                                 .+|..|++++.|+.|++..|.+.+ ..|..|..+..|+-|.+++|.+               +.+|...
T Consensus        93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf---------------e~lp~dv  146 (264)
T KOG0617|consen   93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF---------------EILPPDV  146 (264)
T ss_pred             -----------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc---------------ccCChhh
Confidence                       356777888888888888877654 3555666666666555554443               3567777


Q ss_pred             hcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCc
Q 044855          224 NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS  275 (279)
Q Consensus       224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  275 (279)
                      +++.+|+.|.++.|.+- ..|..++.+..|++|.+.+|+++ .+|..++.+.
T Consensus       147 g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            78888888888888876 67777888888888888888888 7776666553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.9e-17  Score=118.13  Aligned_cols=159  Identities=24%  Similarity=0.403  Sum_probs=120.2

Q ss_pred             cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      -++.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. .. +..+..+++|++|+++.+.  ..+.++.|+.+|.|
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~l-p~~issl~klr~lnvgmnr--l~~lprgfgs~p~l  104 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-EL-PTSISSLPKLRILNVGMNR--LNILPRGFGSFPAL  104 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hc-Chhhhhchhhhheecchhh--hhcCccccCCCchh
Confidence            34666777888888888 56666778888888888888775 22 3567778888888876553  24456678888888


Q ss_pred             eEEEecCCcC--cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcE
Q 044855           96 KVLKLSDCQL--HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRV  169 (279)
Q Consensus        96 ~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~  169 (279)
                      +.|++.+|.+  ..+|..++.+..|+.|++++|++.       .++..+.++++|+.+.+.++    +|..++.+..|+.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence            8888888877  577888888888888888888876       66677777888888877766    6778888888899


Q ss_pred             EEccccEeeeeccccccC
Q 044855          170 LLMSKNYLEANIPVQLNH  187 (279)
Q Consensus       170 L~l~~~~l~~~~~~~l~~  187 (279)
                      |.+.+|.++- .|+.+++
T Consensus       178 lhiqgnrl~v-lppel~~  194 (264)
T KOG0617|consen  178 LHIQGNRLTV-LPPELAN  194 (264)
T ss_pred             Hhcccceeee-cChhhhh
Confidence            9999888877 5544443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.31  E-value=2.8e-13  Score=107.03  Aligned_cols=234  Identities=21%  Similarity=0.255  Sum_probs=126.4

Q ss_pred             cccCCCCccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCcc----cc------hhhhcccccceeeeecCCc
Q 044855           14 CLNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQGT----FS------INSLANHSKLEVLLLSSGS   79 (279)
Q Consensus        14 ~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~------~~~~~~~~~L~~L~l~~~~   79 (279)
                      .+..+..++.|++++|.|..    .+...+.+.+.|+..++++- +++.    ++      ...+..+++|+++++|.|-
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            34556777888888887652    23334555667777766643 1111    11      1234556677777777665


Q ss_pred             ccccccC---CCCCCCCceeEEEecCCcCcccCh--------------hhhcCCCccEEEeeCCcccccCCCCCcCcchh
Q 044855           80 NMLQVKT---ESWHPTSQLKVLKLSDCQLHVIPS--------------FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGL  142 (279)
Q Consensus        80 ~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  142 (279)
                      .....+.   ..+..+.+|++|.+.+|++.....              ...+-++|+.+..++|++.+...  ..+...+
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga--~~~A~~~  181 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA--TALAEAF  181 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH--HHHHHHH
Confidence            4333221   123456677777777776632221              11233567777777666543222  2333444


Q ss_pred             hccCcccceeccCCC---------CccccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcccceEEE
Q 044855          143 RSSTSLEGLDISGNI---------PNWIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSSKLITLD  209 (279)
Q Consensus       143 ~~~~~L~~l~l~~~~---------~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~~L~~L~  209 (279)
                      ...+.|+.+++..+.         ...+..+++|++|++.+|.++..    +...+..++.              |+.|+
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~--------------L~El~  247 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH--------------LRELN  247 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch--------------heeec
Confidence            444555555554331         11233445555555555544321    2223334444              55555


Q ss_pred             eecCccCCCCchhh-----hcCcCCcEEEccCCcccccC----ChhhhcccCCcEEEccCCEee
Q 044855          210 LRDNKFFGRIPYQI-----NELSNLHVLLLRGNSLQGHI----PNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       210 l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      +++|-+......++     ...|.|+.+.+.+|.|+...    ...+...|.|+.|++++|.+.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            55555544443333     34788999999999987542    233445788999999999984

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.7e-12  Score=104.36  Aligned_cols=179  Identities=24%  Similarity=0.271  Sum_probs=116.9

Q ss_pred             cCCCCccEEEeeCCcccccCC--ccccCCCcCcEEeccCcccCcccch-hhhcccccceeeeecCCcccccccCCCCCCC
Q 044855           16 NHLTHLKVLDIFNNQLSGNFP--STLTNFTSLEYLDLSSINFQGTFSI-NSLANHSKLEVLLLSSGSNMLQVKTESWHPT   92 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   92 (279)
                      +++.+|+.+.|.++.+. ..+  .....+++++.|++++|-+..+.+. .....+++|+.|+++.|....-.....-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            45788999999988776 232  3456799999999999977644443 3457889999999988764332222223457


Q ss_pred             CceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----C--ccccCC
Q 044855           93 SQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI----P--NWIGNI  164 (279)
Q Consensus        93 ~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~--~~~~~~  164 (279)
                      +.|+.|.++.|++.  .+...+..+|+++.|++..|....      .......-+..|++|+++++.    +  ...+.+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc------eecchhhhhhHHhhccccCCcccccccccccccc
Confidence            78999999999884  444456678999999999884210      222334446667788887762    1  234567


Q ss_pred             CCCcEEEccccEeeeec-ccc-----ccCCCCccEEeccCCcC
Q 044855          165 STLRVLLMSKNYLEANI-PVQ-----LNHLKSLELIDIFENSL  201 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~-~~~-----l~~~~~L~~l~l~~~~~  201 (279)
                      +.|+.|.++.+++.+.. |..     ...+++|++|++..|.+
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            77788888777766521 211     23445555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=3.3e-12  Score=99.48  Aligned_cols=35  Identities=29%  Similarity=0.299  Sum_probs=17.4

Q ss_pred             ceeEEEecCCcCcccChhhhcCCCccEEEeeCCcc
Q 044855           94 QLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKL  128 (279)
Q Consensus        94 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  128 (279)
                      .|+++++++|.+..+..++.-.|+++.|+++.|.+
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i  319 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI  319 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccce
Confidence            34445555555544444444445555555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=2.6e-11  Score=89.63  Aligned_cols=128  Identities=23%  Similarity=0.303  Sum_probs=43.5

Q ss_pred             CCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEE
Q 044855           91 PTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVL  170 (279)
Q Consensus        91 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L  170 (279)
                      +...+++|++.++.++.+..--..+.+|+.|++++|.+..                           .+.+..++.|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~---------------------------l~~l~~L~~L~~L   69 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK---------------------------LEGLPGLPRLKTL   69 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S-----------------------------TT----TT--EE
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCcc---------------------------ccCccChhhhhhc
Confidence            3445677777777776664322246677777777776652                           1234456778888


Q ss_pred             EccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC---Chhh
Q 044855          171 LMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI---PNEL  247 (279)
Q Consensus       171 ~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~  247 (279)
                      ++++|.++...+.....+|+|+.|++++|.+.+            .+. ...+..+++|+.|++.+|+++...   ...+
T Consensus        70 ~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~------------l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi  136 (175)
T PF14580_consen   70 DLSNNRISSISEGLDKNLPNLQELYLSNNKISD------------LNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVI  136 (175)
T ss_dssp             E--SS---S-CHHHHHH-TT--EEE-TTS---S------------CCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHH
T ss_pred             ccCCCCCCccccchHHhCCcCCEEECcCCcCCC------------hHH-hHHHHcCCCcceeeccCCcccchhhHHHHHH
Confidence            888888876322222356777766666665542            011 234567888888888888887431   2245


Q ss_pred             hcccCCcEEEc
Q 044855          248 CQLAKLRIMDL  258 (279)
Q Consensus       248 ~~~~~L~~L~l  258 (279)
                      ..+|+|+.||-
T Consensus       137 ~~lP~Lk~LD~  147 (175)
T PF14580_consen  137 YKLPSLKVLDG  147 (175)
T ss_dssp             HH-TT-SEETT
T ss_pred             HHcChhheeCC
Confidence            56788887753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=2e-12  Score=102.36  Aligned_cols=200  Identities=22%  Similarity=0.278  Sum_probs=136.9

Q ss_pred             CCCCCcCcCC----CCccccCCCCccEEEeeCCc---ccccCC-------ccccCCCcCcEEeccCcccCcccch---hh
Q 044855            1 DLSSNNFEGH----LPQCLNHLTHLKVLDIFNNQ---LSGNFP-------STLTNFTSLEYLDLSSINFQGTFSI---NS   63 (279)
Q Consensus         1 ~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~---~~   63 (279)
                      |||+|.+...    +...+++.++|+..++++-.   ....+|       +++.++|+|++++||+|.+......   ..
T Consensus        36 ~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~l  115 (382)
T KOG1909|consen   36 DLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEEL  115 (382)
T ss_pred             eccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHH
Confidence            4666666632    33455677888888887632   222333       3456788999999999988633221   23


Q ss_pred             hcccccceeeeecCCcccccc------------cCCCCCCCCceeEEEecCCcCc-----ccChhhhcCCCccEEEeeCC
Q 044855           64 LANHSKLEVLLLSSGSNMLQV------------KTESWHPTSQLKVLKLSDCQLH-----VIPSFLLQQDHLKFLDLSHN  126 (279)
Q Consensus        64 ~~~~~~L~~L~l~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~  126 (279)
                      +..+..|++|.+.+|......            ..+....-+.|+++....|.+.     .++..+...+.|+.+.+..|
T Consensus       116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN  195 (382)
T KOG1909|consen  116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN  195 (382)
T ss_pred             HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc
Confidence            567899999999888642211            1223456679999999999884     34556778899999999999


Q ss_pred             cccccCCCCCcCcchhhccCcccceeccCC---------CCccccCCCCCcEEEccccEeeeeccccc-----cCCCCcc
Q 044855          127 KLVGNFPICGKMDDGLRSSTSLEGLDISGN---------IPNWIGNISTLRVLLMSKNYLEANIPVQL-----NHLKSLE  192 (279)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---------~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~  192 (279)
                      .+....-  ..+...+..+++|+.||+.+|         +...+..+++|+.+++.+|.+.......+     ...|+|+
T Consensus       196 ~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~  273 (382)
T KOG1909|consen  196 GIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE  273 (382)
T ss_pred             cccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence            8753332  245667899999999999988         34556778999999999998876333222     2356667


Q ss_pred             EEeccCCcCc
Q 044855          193 LIDIFENSLS  202 (279)
Q Consensus       193 ~l~l~~~~~~  202 (279)
                      .+.+.+|.++
T Consensus       274 vl~l~gNeIt  283 (382)
T KOG1909|consen  274 VLELAGNEIT  283 (382)
T ss_pred             eeccCcchhH
Confidence            6666666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=2.7e-12  Score=107.73  Aligned_cols=186  Identities=31%  Similarity=0.442  Sum_probs=116.3

Q ss_pred             EEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCC
Q 044855           47 YLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHN  126 (279)
Q Consensus        47 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  126 (279)
                      ..+++.|.+. .+ +..+..+..|+.+.++.|.+  ...+..+..+..|+.++++.|.+..+|..++.++ |+.|-+++|
T Consensus        79 ~aDlsrNR~~-el-p~~~~~f~~Le~liLy~n~~--r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRFS-EL-PEEACAFVSLESLILYHNCI--RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhccccccc-cC-chHHHHHHHHHHHHHHhccc--eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence            3455555543 11 13344444555555544421  2223345666677777777777777777777766 677777777


Q ss_pred             cccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855          127 KLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  202 (279)
                      ++.       .+++.+.....|..++.+.|    ++..++.+.+|+.|.+.+|.+.. +|..+..+              
T Consensus       154 kl~-------~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~L--------------  211 (722)
T KOG0532|consen  154 KLT-------SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL--------------  211 (722)
T ss_pred             ccc-------cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC--------------
Confidence            765       33444444455555555544    45556666666777776666655 44444433              


Q ss_pred             ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC---CcEEEccCCE
Q 044855          203 SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK---LRIMDLSNNI  262 (279)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~---L~~L~l~~n~  262 (279)
                       .|..||+++|++. .+|..|+.|..|+.|-|.+|+++ ..|..++-...   .++|++.-|.
T Consensus       212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence             4556777777763 58889999999999999999998 66666665433   4677887774

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=3.1e-11  Score=94.13  Aligned_cols=120  Identities=28%  Similarity=0.340  Sum_probs=96.9

Q ss_pred             hhhccCcccceeccCCCC----ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceE
Q 044855          141 GLRSSTSLEGLDISGNIP----NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLIT  207 (279)
Q Consensus       141 ~~~~~~~L~~l~l~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~  207 (279)
                      .+.....|+++|+++|.+    +.+.-.|.++.|+++.|.+...  ..++.+++|..|++++|.+.+         ++++
T Consensus       279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            444566788999998844    3445679999999999998763  348899999999999998875         8999


Q ss_pred             EEeecCccCCCCchhhhcCcCCcEEEccCCccccc-CChhhhcccCCcEEEccCCEee
Q 044855          208 LDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGH-IPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       208 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      |.++.|.+.+  ...+..+-+|..||+++|+|... -...++++|.|+.+.+.+|++.
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            9999998842  23466778899999999998743 3557889999999999999998

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=8.6e-12  Score=101.53  Aligned_cols=155  Identities=21%  Similarity=0.087  Sum_probs=63.7

Q ss_pred             CCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc-ccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCc
Q 044855           42 FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHL  118 (279)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L  118 (279)
                      +.+|+.+.+.++.+...........|++++.|+++.|-.... ........+|+|+.|+++.|.+.....  ....++.+
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            455555555555443222123344555555555555432211 112223445555555555554422211  11133445


Q ss_pred             cEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---Ccc--ccCCCCCcEEEccccEeee-eccccccCCCCcc
Q 044855          119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---PNW--IGNISTLRVLLMSKNYLEA-NIPVQLNHLKSLE  192 (279)
Q Consensus       119 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~--~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~  192 (279)
                      +.|.++.|.++.     ......+..+++++.|++.+|-   ...  ...+..|+.|++++|.+.. ......+.+|.|+
T Consensus       200 K~L~l~~CGls~-----k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  200 KQLVLNSCGLSW-----KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             heEEeccCCCCH-----HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            555555554431     1222333444555555554441   111  1223445555555554433 1112234444444


Q ss_pred             EEeccCCcC
Q 044855          193 LIDIFENSL  201 (279)
Q Consensus       193 ~l~l~~~~~  201 (279)
                      .|+++.+.+
T Consensus       275 ~Lnls~tgi  283 (505)
T KOG3207|consen  275 QLNLSSTGI  283 (505)
T ss_pred             hhhccccCc
Confidence            444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=4.2e-12  Score=106.56  Aligned_cols=168  Identities=25%  Similarity=0.388  Sum_probs=135.0

Q ss_pred             CCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCC
Q 044855           92 TSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTL  167 (279)
Q Consensus        92 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L  167 (279)
                      +..-...+++.|.+..+|..+..+..|+.+.+..|.+.       .++..+..+..|.+++++.+    +|..+..++ |
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-L  145 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-------TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-L  145 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-------ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-c
Confidence            44455568888889999988888888998888888876       66778888889999998876    566666666 8


Q ss_pred             cEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855          168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS  238 (279)
Q Consensus       168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  238 (279)
                      +.|.+++|.++. .|..++..+.|..++.+.|.+..         +|+.|.+..|... .+|..+..+ .|..||+++|+
T Consensus       146 kvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  146 KVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             eeEEEecCcccc-CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence            999999999887 77778888899999999998765         7778888888774 466666644 48899999999


Q ss_pred             ccccCChhhhcccCCcEEEccCCEeeeecCcccc
Q 044855          239 LQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG  272 (279)
Q Consensus       239 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  272 (279)
                      +. .+|..|..|+.|++|-|.+|+++ +=|..+|
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence            98 88889999999999999999987 4444433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1.4e-10  Score=85.71  Aligned_cols=131  Identities=24%  Similarity=0.219  Sum_probs=53.4

Q ss_pred             ccCCCCccEEEeeCCcccccCCcccc-CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855           15 LNHLTHLKVLDIFNNQLSGNFPSTLT-NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS   93 (279)
Q Consensus        15 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   93 (279)
                      +.+..++++|+|.++.++ .+. .+. .+.+|+.|++++|.+.. +  ..+..++.|+.|++++|... .+.......++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c--cCccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            345567899999999988 333 344 57899999999998873 2  35777899999999888643 33211124588


Q ss_pred             ceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceecc
Q 044855           94 QLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS  154 (279)
Q Consensus        94 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  154 (279)
                      +|++|.+++|.+..+..  .+..+++|+.|++.+|++....   ..-...+..+++|+.||-.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST---THHHHHHHH-TT-SEETTE
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh---hHHHHHHHHcChhheeCCE
Confidence            99999999999866643  5667899999999999987443   2445567888999999865

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=2.4e-10  Score=97.16  Aligned_cols=193  Identities=33%  Similarity=0.410  Sum_probs=102.8

Q ss_pred             EEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhccc-ccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855           23 VLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANH-SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS  101 (279)
Q Consensus        23 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  101 (279)
                      .+.+..+.+. .....+...+.++.|++..+.+.. ++ ...... .+|+.|+++.+.. ..++ ..++.+++|+.|++.
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~-i~-~~~~~~~~nL~~L~l~~N~i-~~l~-~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITD-IP-PLIGLLKSNLKELDLSDNKI-ESLP-SPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCccccc-Cc-cccccchhhcccccccccch-hhhh-hhhhccccccccccC
Confidence            4666666653 222334556778888888887762 22 223333 2677777766653 2221 234667778888888


Q ss_pred             CCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEe
Q 044855          102 DCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYL  177 (279)
Q Consensus       102 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l  177 (279)
                      +|.+..++......+.|+.|++++|.+.       .++........|+++.++++    .+..+..+..+..+.+..+.+
T Consensus       172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i~-------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         172 FNDLSDLPKLLSNLSNLNNLDLSGNKIS-------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             CchhhhhhhhhhhhhhhhheeccCCccc-------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence            8877777776656777777888877765       22233333444555555544    123334444555555555544


Q ss_pred             eeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855          178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP  244 (279)
Q Consensus       178 ~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (279)
                      .. .+..++.+++++.+++++|.+.              . ++. +....+++.++++++.+....+
T Consensus       245 ~~-~~~~~~~l~~l~~L~~s~n~i~--------------~-i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         245 ED-LPESIGNLSNLETLDLSNNQIS--------------S-ISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ee-ccchhccccccceecccccccc--------------c-ccc-ccccCccCEEeccCccccccch
Confidence            43 2333444444443333333222              1 111 4445556666666665553333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=5.9e-10  Score=67.97  Aligned_cols=60  Identities=38%  Similarity=0.525  Sum_probs=50.0

Q ss_pred             cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEe
Q 044855          204 KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIF  263 (279)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  263 (279)
                      +|+.|++++|++....+..|..+++|+.|++++|.++...+..|.++++|+.|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466777777877666667888899999999999999877888889999999999999875

...

>PLN03150 hypothetical protein; Provisional

Probab=98.89  E-value=2.6e-09  Score=95.42  Aligned_cols=92  Identities=37%  Similarity=0.590  Sum_probs=52.0

Q ss_pred             CcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChh
Q 044855          167 LRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE  246 (279)
Q Consensus       167 L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  246 (279)
                      ++.|+++++.+.+..|..+..+++|+.|++++|.              +.+.+|..+..+++|+.|++++|.+++.+|..
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--------------l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS--------------IRGNIPPSLGSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc--------------ccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence            5566666666666566666666666655555554              44445555555555555555555555555555


Q ss_pred             hhcccCCcEEEccCCEeeeecCcccc
Q 044855          247 LCQLAKLRIMDLSNNIFSGSIPSCLG  272 (279)
Q Consensus       247 ~~~~~~L~~L~l~~n~l~~~~p~~~~  272 (279)
                      +..+++|+.|++++|.++|.+|..+.
T Consensus       486 l~~L~~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        486 LGQLTSLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             HhcCCCCCEEECcCCcccccCChHHh
Confidence            55555555555555555555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=3.8e-09  Score=64.37  Aligned_cols=59  Identities=34%  Similarity=0.489  Sum_probs=40.5

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCC
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG   78 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   78 (279)
                      |+|++|++++|+++...+..|.++++|++|++++|.+. .++...+..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCC
Confidence            56777888888777555567777888888888877775 444455666666666666555

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.8e-09  Score=98.86  Aligned_cols=148  Identities=21%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCccc-CcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           17 HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINF-QGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      +....+...+.++.+. ..+... .+++|++|-+.++.. ....+...+..++.|++|++++|......| ..++.+.+|
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHL  597 (889)
T ss_pred             chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhh
Confidence            4456778888888776 444433 456899998888862 235556678889999999999877555555 457889999


Q ss_pred             eEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-------CccccCCCCCc
Q 044855           96 KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-------PNWIGNISTLR  168 (279)
Q Consensus        96 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~~~~~~~L~  168 (279)
                      ++|+++++.+..+|.++..+.+|.+|++..+....      ..+.....+.+|+++.+....       ...+..+.+|+
T Consensus       598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~------~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~  671 (889)
T KOG4658|consen  598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE------SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE  671 (889)
T ss_pred             hcccccCCCccccchHHHHHHhhheeccccccccc------cccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence            99999999999999999999999999999876542      224566668888888876442       22234445555


Q ss_pred             EEEcc
Q 044855          169 VLLMS  173 (279)
Q Consensus       169 ~L~l~  173 (279)
                      .+...
T Consensus       672 ~ls~~  676 (889)
T KOG4658|consen  672 NLSIT  676 (889)
T ss_pred             hheee
Confidence            55543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=2.4e-09  Score=83.63  Aligned_cols=211  Identities=19%  Similarity=0.145  Sum_probs=126.6

Q ss_pred             CccccCCCCccEEEeeCCcccccC-Cccc-cCCCcCcEEeccCcccCcccch-hhhcccccceeeeecCCcccccccCCC
Q 044855           12 PQCLNHLTHLKVLDIFNNQLSGNF-PSTL-TNFTSLEYLDLSSINFQGTFSI-NSLANHSKLEVLLLSSGSNMLQVKTES   88 (279)
Q Consensus        12 ~~~~~~l~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~   88 (279)
                      +-.++...-++.+.+.++.+.... ...| ..+..++.+++.+|.++++... ..+.+++.|++|+++.|.....+....
T Consensus        38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp  117 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP  117 (418)
T ss_pred             eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence            333444455566666666654211 1122 3578999999999999866543 456899999999999887644443221


Q ss_pred             CCCCCceeEEEecCCcC--cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhh-ccCcccceeccCCCC-------
Q 044855           89 WHPTSQLKVLKLSDCQL--HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLR-SSTSLEGLDISGNIP-------  158 (279)
Q Consensus        89 ~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~-------  158 (279)
                       ....+|+++-+.+.++  ......+..+|++++|+++.|......-    -.+... -.+.++++++.+|..       
T Consensus       118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~----Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~  192 (418)
T KOG2982|consen  118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNL----DDNCIEDWSTEVLTLHQLPCLEQLWLNKN  192 (418)
T ss_pred             -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcc----ccccccccchhhhhhhcCCcHHHHHHHHH
Confidence             4567999999999877  5566677889999999999985432111    011111 123566666666621       


Q ss_pred             ccccCCCCCcEEEccccEeeeec-cccccCCCCccEEeccCCcCcccceEEEeecCccCCC-CchhhhcCcCCcEEEccC
Q 044855          159 NWIGNISTLRVLLMSKNYLEANI-PVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRG  236 (279)
Q Consensus       159 ~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~  236 (279)
                      ....-.|++..+.+..|.++... ...+..+|.+.-|+++.+++.+              . ..+++..++.|.-|.+++
T Consensus       193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids--------------wasvD~Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS--------------WASVDALNGFPQLVDLRVSE  258 (418)
T ss_pred             hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccccc--------------HHHHHHHcCCchhheeeccC
Confidence            11233577888888888765422 2234445555555555554432              1 122344555666666666


Q ss_pred             Ccccc
Q 044855          237 NSLQG  241 (279)
Q Consensus       237 n~~~~  241 (279)
                      +++.+
T Consensus       259 ~Pl~d  263 (418)
T KOG2982|consen  259 NPLSD  263 (418)
T ss_pred             Ccccc
Confidence            65543

>PLN03150 hypothetical protein; Provisional

Probab=98.79  E-value=1e-08  Score=91.61  Aligned_cols=107  Identities=26%  Similarity=0.333  Sum_probs=82.9

Q ss_pred             CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855           20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK   99 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   99 (279)
                      .++.|+|+++.+.+.+|..+..+++|++|++++|.+.+.++ ..+..++.|+.|++++|.....++ ..+..+++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEE
Confidence            37788888888888888888889999999999988875544 567888889999998886544443 4577888999999


Q ss_pred             ecCCcC-cccChhhhcC-CCccEEEeeCCcc
Q 044855          100 LSDCQL-HVIPSFLLQQ-DHLKFLDLSHNKL  128 (279)
Q Consensus       100 l~~~~~-~~~~~~~~~~-~~L~~L~l~~~~~  128 (279)
                      +++|.+ ..+|..+... .++..+++.+|..
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCcc
Confidence            999888 4777766553 4567788887754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=7.2e-09  Score=88.13  Aligned_cols=169  Identities=34%  Similarity=0.487  Sum_probs=133.7

Q ss_pred             CCCCceeEEEecCCcCcccChhhhcCC-CccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCC
Q 044855           90 HPTSQLKVLKLSDCQLHVIPSFLLQQD-HLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNI  164 (279)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~  164 (279)
                      ...+.++.+.+.++.+..++....... +|+.|++++|.+.       .++..+..+++|+.|+++++    ++...+..
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~  185 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-------SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL  185 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchh-------hhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence            445789999999999999998877774 9999999999886       33357888999999999988    33333478


Q ss_pred             CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLR  235 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  235 (279)
                      +.|+.|++++|.+.. .|........|+.+.+++|....         ++..+.+.+|++.. .+..+..+++++.|+++
T Consensus       186 ~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         186 SNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLS  263 (394)
T ss_pred             hhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceeccc
Confidence            899999999999988 55555566679999999994222         66677777777643 25566778889999999


Q ss_pred             CCcccccCChhhhcccCCcEEEccCCEeeeecCc
Q 044855          236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS  269 (279)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~  269 (279)
                      +|.++....  +....+++.|++++|.++...|.
T Consensus       264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         264 NNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccccccc--ccccCccCEEeccCccccccchh
Confidence            999985444  78889999999999999866554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.78  E-value=3.1e-09  Score=97.37  Aligned_cols=88  Identities=27%  Similarity=0.394  Sum_probs=48.8

Q ss_pred             ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855           13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT   92 (279)
Q Consensus        13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   92 (279)
                      ..|..+|.|+.|++++|.-.+.+|..+..+-+||+|+++++.+. .. +..+.++..|.+|++..+.....+ +.....+
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~L-P~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L  641 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HL-PSGLGNLKKLIYLNLEVTGRLESI-PGILLEL  641 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-cc-chHHHHHHhhheeccccccccccc-cchhhhc
Confidence            34556666666666655444456666666666666666666554 22 245566666666666554432222 3333446


Q ss_pred             CceeEEEecCC
Q 044855           93 SQLKVLKLSDC  103 (279)
Q Consensus        93 ~~L~~L~l~~~  103 (279)
                      .+|++|.+...
T Consensus       642 ~~Lr~L~l~~s  652 (889)
T KOG4658|consen  642 QSLRVLRLPRS  652 (889)
T ss_pred             ccccEEEeecc
Confidence            66666665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.2e-10  Score=90.64  Aligned_cols=174  Identities=22%  Similarity=0.166  Sum_probs=105.6

Q ss_pred             CcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCC-cCccc--ChhhhcCCCcc
Q 044855           43 TSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDC-QLHVI--PSFLLQQDHLK  119 (279)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~L~  119 (279)
                      ..|++++++...++.......+..|.+|+.|.+.+......+.. .+....+|+.++++.| ++++.  ...+.+|+.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            35788888887777555556677888888888877654433332 3455677888888876 44433  34566788888


Q ss_pred             EEEeeCCcccccCCCCCcCcchhhc-cCcccceeccCCCC--------ccccCCCCCcEEEccccE-eeeeccccccCCC
Q 044855          120 FLDLSHNKLVGNFPICGKMDDGLRS-STSLEGLDISGNIP--------NWIGNISTLRVLLMSKNY-LEANIPVQLNHLK  189 (279)
Q Consensus       120 ~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~--------~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~  189 (279)
                      +|++++|......     ....+.+ -.++..|+++|+..        .....+++|..||+++|. ++......+.+++
T Consensus       264 ~LNlsWc~l~~~~-----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  264 ELNLSWCFLFTEK-----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             hcCchHhhccchh-----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            8888887654221     1111111 24566777776521        123457788888888775 3333344566677


Q ss_pred             CccEEeccCCcCcccceEEEeecCccCCCCchh---hhcCcCCcEEEccCCc
Q 044855          190 SLELIDIFENSLSSKLITLDLRDNKFFGRIPYQ---INELSNLHVLLLRGNS  238 (279)
Q Consensus       190 ~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~  238 (279)
                      .|+++.++.|..                ..|..   +..+|+|++|++.++-
T Consensus       339 ~L~~lSlsRCY~----------------i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  339 YLQHLSLSRCYD----------------IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hheeeehhhhcC----------------CChHHeeeeccCcceEEEEecccc
Confidence            777666666642                22322   3456677777776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=5.9e-11  Score=92.39  Aligned_cols=174  Identities=25%  Similarity=0.293  Sum_probs=108.3

Q ss_pred             CccEEEeeCCcccc-cCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCC-CCCCCCceeE
Q 044855           20 HLKVLDIFNNQLSG-NFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTE-SWHPTSQLKV   97 (279)
Q Consensus        20 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~   97 (279)
                      .|+.+||++..++. .+-..+..+.+|+.|.+.|+++.+.+. ..+++..+|+.++++.|.-.+..... .+..++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            47788888877763 222345667888888888887764433 56677778888888877544333222 3466778888


Q ss_pred             EEecCCcC--cccChhhhc-CCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------CCccccCCCCCc
Q 044855           98 LKLSDCQL--HVIPSFLLQ-QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLR  168 (279)
Q Consensus        98 L~l~~~~~--~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------~~~~~~~~~~L~  168 (279)
                      |++++|..  +.+...+.. -++|+.|+++++...-..   ..+..-...++++.+||++++      +...+.+++.|+
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            88888866  222222222 367788888876532100   122233456778888888876      234566788899


Q ss_pred             EEEccccEeeeeccc---cccCCCCccEEeccCC
Q 044855          169 VLLMSKNYLEANIPV---QLNHLKSLELIDIFEN  199 (279)
Q Consensus       169 ~L~l~~~~l~~~~~~---~l~~~~~L~~l~l~~~  199 (279)
                      ++.+++|+.  .+|.   .+...|+|.+|++.++
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            999998864  2232   3455666776665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.59  E-value=1.3e-08  Score=86.93  Aligned_cols=173  Identities=27%  Similarity=0.327  Sum_probs=108.8

Q ss_pred             cccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855           14 CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS   93 (279)
Q Consensus        14 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   93 (279)
                      .+..+++++.+++.+|.+. .+...+..+++|++|++++|.+...   ..+..+..|+.|++++|.+.. +  ..+..++
T Consensus        90 ~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~-~--~~~~~l~  162 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISD-I--SGLESLK  162 (414)
T ss_pred             ccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc---cchhhccchhhheeccCcchh-c--cCCccch
Confidence            3566788888888888887 3333366788888888888887632   345555668888888776422 2  1234477


Q ss_pred             ceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCC---C--CC
Q 044855           94 QLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNI---S--TL  167 (279)
Q Consensus        94 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~--~L  167 (279)
                      +|+.+++++|.+..+... ...+.+++.+++.+|.+...        ..+.....+..+++..+....+..+   .  +|
T Consensus       163 ~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--------~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L  234 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--------EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHL  234 (414)
T ss_pred             hhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--------cchHHHHHHHHhhcccccceeccCcccchhHHH
Confidence            888888888888766653 46678888888888766422        2222333333334444432222222   2  26


Q ss_pred             cEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855          168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  202 (279)
                      +.++++++++.. .+..+..++.+..+++.++.+.
T Consensus       235 ~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  235 RELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             HHHhcccCcccc-ccccccccccccccchhhcccc
Confidence            778888877765 2244556666676777666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.58  E-value=4.8e-09  Score=80.93  Aligned_cols=186  Identities=19%  Similarity=0.174  Sum_probs=121.1

Q ss_pred             ccCCCCccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCc---------ccchhhhcccccceeeeecCCccc
Q 044855           15 LNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQG---------TFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus        15 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      +..+..++.++|++|.|..    .+...+.+-.+|+..+++.--...         ......+.+|++|+..+++.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3457888999999998762    233445667888888887642211         112245678899999999988776


Q ss_pred             ccccCC---CCCCCCceeEEEecCCcCcccC-----hh---------hhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855           82 LQVKTE---SWHPTSQLKVLKLSDCQLHVIP-----SF---------LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS  144 (279)
Q Consensus        82 ~~~~~~---~~~~~~~L~~L~l~~~~~~~~~-----~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  144 (279)
                      ...+..   .+...+.|.+|.+++|++..++     ..         ...-|.|+.+...+|++.....  ......+..
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~--~~~a~~l~s  183 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK--ELSAALLES  183 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH--HHHHHHHHh
Confidence            655443   4467788999999999885443     12         2234789999988888752211  123334555


Q ss_pred             cCcccceeccCCC--Ccc--------ccCCCCCcEEEccccEeeeec----cccccCCCCccEEeccCCcCc
Q 044855          145 STSLEGLDISGNI--PNW--------IGNISTLRVLLMSKNYLEANI----PVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       145 ~~~L~~l~l~~~~--~~~--------~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~l~l~~~~~~  202 (279)
                      ...|+.+.+..|.  |..        +.-+.+|+.|++.+|.++...    ...++.++.|+.|.+.+|.+.
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            5678888877662  221        234578888888888776532    334566777888877777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.49  E-value=2e-09  Score=87.52  Aligned_cols=243  Identities=17%  Similarity=0.108  Sum_probs=104.4

Q ss_pred             cCCCCccEEEeeCCc-ccccCCccc-cCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCcccccccCC-CCCC
Q 044855           16 NHLTHLKVLDIFNNQ-LSGNFPSTL-TNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGSNMLQVKTE-SWHP   91 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~   91 (279)
                      .++|+++.|++.+|. ++......+ ..+++|+++++..|. ++......-...|++|++++++||..+..-..+ .+.+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            356667777666663 222222222 346667777766653 332222224456677777777776544331111 2234


Q ss_pred             CCceeEEEecCCcC---cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--CC----ccc-
Q 044855           92 TSQLKVLKLSDCQL---HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--IP----NWI-  161 (279)
Q Consensus        92 ~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--~~----~~~-  161 (279)
                      +..++.+...+|.-   +.+-..-..+.-+.++++..+......    .....-..+..|+.++.+++  +.    ..+ 
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~----~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg  316 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE----DLWLIACGCHALQVLCYSSCTDITDEVLWALG  316 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch----HHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence            44455554444421   111111112233333333333211100    11112233445555555543  11    111 


Q ss_pred             cCCCCCcEEEccccE-eeeecccc-ccCCCCccEEeccCCcCcc------------cceEEEeecCc-cCCCCchhh---
Q 044855          162 GNISTLRVLLMSKNY-LEANIPVQ-LNHLKSLELIDIFENSLSS------------KLITLDLRDNK-FFGRIPYQI---  223 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~-l~~~~~~~-l~~~~~L~~l~l~~~~~~~------------~L~~L~l~~~~-~~~~~~~~~---  223 (279)
                      ...++|+.+-+.+|. ++...... -.+++.|+.+++.++....            .|+.+.++.|. +++..-..+   
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            234556666665554 22111111 1234455555544443221            34444444332 122211111   


Q ss_pred             -hcCcCCcEEEccCCc-ccccCChhhhcccCCcEEEccCCE
Q 044855          224 -NELSNLHVLLLRGNS-LQGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       224 -~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                       ..+..+..+.+++++ +++...+.+..+++|+.+++.+|.
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence             234556666666665 344455556666666666666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=3.4e-08  Score=84.42  Aligned_cols=164  Identities=35%  Similarity=0.439  Sum_probs=89.3

Q ss_pred             CCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc---ccCCC
Q 044855           89 WHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW---IGNIS  165 (279)
Q Consensus        89 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~~~  165 (279)
                      +..+.+|+.+++.++.++.+...+..+++|+.|++++|.+.+.        ..+..++.|+.|++.+|....   +..++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--------~~l~~l~~L~~L~l~~N~i~~~~~~~~l~  162 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--------EGLSTLTLLKELNLSGNLISDISGLESLK  162 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccc--------cchhhccchhhheeccCcchhccCCccch
Confidence            3455666666666666666655455666667777776666532        233444446666666663332   33356


Q ss_pred             CCcEEEccccEeeeecc-ccccCCCCccEEeccCCcCcc--------cceEEEeecCccCCCCchhhhcCc--CCcEEEc
Q 044855          166 TLRVLLMSKNYLEANIP-VQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELS--NLHVLLL  234 (279)
Q Consensus       166 ~L~~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~--------~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l  234 (279)
                      .|+.+++++|.+....+ . ...+.+++.+.+.+|.+..        .+..+++.+|.+...-+  +..+.  +|+.+++
T Consensus       163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYL  239 (414)
T ss_pred             hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhc
Confidence            67777777776665333 1 3566666766676666543        33333445554432211  11111  2566666


Q ss_pred             cCCcccccCChhhhcccCCcEEEccCCEee
Q 044855          235 RGNSLQGHIPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       235 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      ++|++. ..+..+..++.+..+++.+|.+.
T Consensus       240 ~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  240 SGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccCccc-cccccccccccccccchhhcccc
Confidence            666665 22244445555666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.1e-07  Score=74.44  Aligned_cols=204  Identities=15%  Similarity=0.090  Sum_probs=107.5

Q ss_pred             CCCcCcEEeccCcccCcccchhhh-cccccceeeeecCCccccc-ccCCCCCCCCceeEEEecCCcCcccChhh-hcCCC
Q 044855           41 NFTSLEYLDLSSINFQGTFSINSL-ANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFL-LQQDH  117 (279)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~  117 (279)
                      ....++.+.+.++.+...-....+ ..++.++.+++.+|.+... -....+..+|.|++|+++.|.+...-..+ ....+
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            334444566666655432222222 3456666777766654222 11223456666677776666552211111 23455


Q ss_pred             ccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeecc--cccc-CCCCccEE
Q 044855          118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIP--VQLN-HLKSLELI  194 (279)
Q Consensus       118 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~-~~~~L~~l  194 (279)
                      |+.|-+.+..+...     ..                   ...+..+|.++.|.++.|.+.....  .... ..+.++.+
T Consensus       123 l~~lVLNgT~L~w~-----~~-------------------~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tl  178 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWT-----QS-------------------TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTL  178 (418)
T ss_pred             eEEEEEcCCCCChh-----hh-------------------hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhh
Confidence            66666666544311     11                   2223344555555555553221000  0000 11233333


Q ss_pred             eccCCcCc------------ccceEEEeecCccCCC-CchhhhcCcCCcEEEccCCcccc-cCChhhhcccCCcEEEccC
Q 044855          195 DIFENSLS------------SKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRGNSLQG-HIPNELCQLAKLRIMDLSN  260 (279)
Q Consensus       195 ~l~~~~~~------------~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~  260 (279)
                      ++..|...            +++..+-+..|.+... ....+..+|.+..|++..+.|.+ +-.+.+..++.|..|.+.+
T Consensus       179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE  258 (418)
T ss_pred             hcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence            33333211            2666667777766433 23455677888899999999864 3566788899999999999


Q ss_pred             CEeeeecC
Q 044855          261 NIFSGSIP  268 (279)
Q Consensus       261 n~l~~~~p  268 (279)
                      +++.+.+.
T Consensus       259 ~Pl~d~l~  266 (418)
T KOG2982|consen  259 NPLSDPLR  266 (418)
T ss_pred             Cccccccc
Confidence            99875543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=9.3e-09  Score=89.38  Aligned_cols=179  Identities=28%  Similarity=0.292  Sum_probs=97.1

Q ss_pred             CccccCCCcCcEEeccCcccCcccchhhhccc-ccceeeeecCCcc-cccccCC---CC---CCCCceeEEEecCCcCcc
Q 044855           36 PSTLTNFTSLEYLDLSSINFQGTFSINSLANH-SKLEVLLLSSGSN-MLQVKTE---SW---HPTSQLKVLKLSDCQLHV  107 (279)
Q Consensus        36 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~-~~~~~~~---~~---~~~~~L~~L~l~~~~~~~  107 (279)
                      |-.+..+..|++|.+.+|.+....   .+..+ .+|++|...+.-- ...+...   .+   -.+-.|.+.+.++|.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~---GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK---GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh---hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence            445678889999999999886321   22222 3556655432210 0000000   01   112356677777888777


Q ss_pred             cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccC----CCCCcEEEccccEeeeeccc
Q 044855          108 IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGN----ISTLRVLLMSKNYLEANIPV  183 (279)
Q Consensus       108 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~L~~L~l~~~~l~~~~~~  183 (279)
                      +...+.-++.++.|++++|++.+.        ..+..+++|++||++.|....+..    -..|..|.+.+|.++..  .
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL--~  248 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL--R  248 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh--h
Confidence            777888888888888888887621        255566666666666552221111    12366666666655441  2


Q ss_pred             cccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855          184 QLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ  240 (279)
Q Consensus       184 ~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (279)
                      .+.++++|+.||++.|-+..             ..--.-+..+..|+.|.+.||++.
T Consensus       249 gie~LksL~~LDlsyNll~~-------------hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLSE-------------HSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hHHhhhhhhccchhHhhhhc-------------chhhhHHHHHHHHHHHhhcCCccc
Confidence            23444444444444443221             011112344566777777777764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=1e-06  Score=49.36  Aligned_cols=37  Identities=41%  Similarity=0.577  Sum_probs=23.4

Q ss_pred             cCCcEEEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855          227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      ++|++|++++|+++ .++..++.+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35667777777776 44445667777777777777766

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=2.1e-06  Score=63.70  Aligned_cols=108  Identities=18%  Similarity=0.204  Sum_probs=67.6

Q ss_pred             CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE
Q 044855           18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV   97 (279)
Q Consensus        18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   97 (279)
                      ..+...+++++|.+. .++ .|..++.|++|.+++|.++ .+.+.--..+++|+.|.+.+|....-.....+..+|.|++
T Consensus        41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            455667777777665 232 3566777777777777776 4444444555677777777665432223334566777777


Q ss_pred             EEecCCcCcccC----hhhhcCCCccEEEeeCCcc
Q 044855           98 LKLSDCQLHVIP----SFLLQQDHLKFLDLSHNKL  128 (279)
Q Consensus        98 L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~  128 (279)
                      |.+-+|.++..+    ..+..+|+|+.|++.+...
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            777777764433    2455677888888776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.16  E-value=5.6e-06  Score=61.48  Aligned_cols=127  Identities=18%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855           22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS  101 (279)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  101 (279)
                      +++++++.++. .....=...-....+++++|.+.   ....+..++.|.+|.+++|. +..+....-..+++|+.|.+.
T Consensus        22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc-chhhccccccccceecccccchh---hcccCCCccccceEEecCCc-ceeeccchhhhccccceEEec
Confidence            45566665544 11110112346677888888764   22456777888888887665 445554445667888889998


Q ss_pred             CCcCcccCh--hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC
Q 044855          102 DCQLHVIPS--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN  156 (279)
Q Consensus       102 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  156 (279)
                      +|.+..+..  .+..||+|++|.+-+|.......   .-...+..++.|+.||+.+-
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~---YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN---YRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccC---ceeEEEEecCcceEeehhhh
Confidence            888866643  56678889998888887764332   33446677888888888754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=4.2e-06  Score=46.82  Aligned_cols=37  Identities=38%  Similarity=0.620  Sum_probs=30.2

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccC
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ   56 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   56 (279)
                      ++|++|++++|+++ .+|..+.++++|++|++++|.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57899999999998 56666889999999999999887

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.10  E-value=9.2e-07  Score=79.42  Aligned_cols=127  Identities=18%  Similarity=0.144  Sum_probs=75.5

Q ss_pred             ccceeeeecCCcccccccCC-CCCCCCceeEEEecCCcC--cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855           68 SKLEVLLLSSGSNMLQVKTE-SWHPTSQLKVLKLSDCQL--HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS  144 (279)
Q Consensus        68 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  144 (279)
                      .+|++|++++.......... .-..+|.|+.|.+++-.+  +++.....++|+|..||++++++..       + .+++.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-------l-~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-------L-SGISR  193 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-------c-HHHhc
Confidence            57777877765443333222 224577888888877655  3444455567888888888877652       1 56677


Q ss_pred             cCcccceeccCC------CCccccCCCCCcEEEccccEeeeec------cccccCCCCccEEeccCCcCc
Q 044855          145 STSLEGLDISGN------IPNWIGNISTLRVLLMSKNYLEANI------PVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       145 ~~~L~~l~l~~~------~~~~~~~~~~L~~L~l~~~~l~~~~------~~~l~~~~~L~~l~l~~~~~~  202 (279)
                      +++|+.|.+.+-      ....+.++++|+.||+|+.......      .+.-..+|+|+.||.++..+.
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777777766533      1123456788888888876533211      111224666666666655544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.05  E-value=1.1e-07  Score=77.73  Aligned_cols=237  Identities=15%  Similarity=0.078  Sum_probs=132.0

Q ss_pred             cCCCCccEEEeeCC-cccccCCc-cccCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCccccc-ccCCCCCC
Q 044855           16 NHLTHLKVLDIFNN-QLSGNFPS-TLTNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHP   91 (279)
Q Consensus        16 ~~l~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~   91 (279)
                      .++++++.|++..| .++...-+ .-..+++|+++++++|. +++.-.....+++..++.+...+|.-... .....-..
T Consensus       187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~  266 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY  266 (483)
T ss_pred             HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence            36899999999985 44432222 23568999999999994 44322223456666677666655532111 11111133


Q ss_pred             CCceeEEEecCCcC-ccc--ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-------Cccc
Q 044855           92 TSQLKVLKLSDCQL-HVI--PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-------PNWI  161 (279)
Q Consensus        92 ~~~L~~L~l~~~~~-~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~~  161 (279)
                      +..+.++++..|.. +..  ...-..+..|+.+..+++...+..    .+..--.+..+|+.+-+.++-       ...-
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~----~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~  342 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE----VLWALGQHCHNLQVLELSGCQQFSDRGFTMLG  342 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH----HHHHHhcCCCceEEEeccccchhhhhhhhhhh
Confidence            34455555555532 221  122234566666666654321110    111222345566666666551       1222


Q ss_pred             cCCCCCcEEEccccEeeee--ccccccCCCCccEEeccCCcCcc---------------cceEEEeecCcc-CCCCchhh
Q 044855          162 GNISTLRVLLMSKNYLEAN--IPVQLNHLKSLELIDIFENSLSS---------------KLITLDLRDNKF-FGRIPYQI  223 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~l~l~~~~~~~---------------~L~~L~l~~~~~-~~~~~~~~  223 (279)
                      .+++.|+.+++.++.....  +...-.+++.|+.+.++++....               .++.+.+++++. ++...+.+
T Consensus       343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l  422 (483)
T KOG4341|consen  343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL  422 (483)
T ss_pred             cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence            4567777777777764332  22223467777777777664321               677888888865 34455667


Q ss_pred             hcCcCCcEEEccCCc-ccccCCh-hhhcccCCcEE
Q 044855          224 NELSNLHVLLLRGNS-LQGHIPN-ELCQLAKLRIM  256 (279)
Q Consensus       224 ~~~~~L~~L~l~~n~-~~~~~~~-~~~~~~~L~~L  256 (279)
                      ..+++|+.+++..++ ++.+... .-..+|+++..
T Consensus       423 ~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  423 SICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             hhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            889999999999886 4433333 33456766654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.99  E-value=2.7e-06  Score=66.09  Aligned_cols=225  Identities=20%  Similarity=0.179  Sum_probs=134.3

Q ss_pred             cccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCccc---------ccccCCCCCCCCceeEEEecCCcC
Q 044855           38 TLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNM---------LQVKTESWHPTSQLKVLKLSDCQL  105 (279)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~  105 (279)
                      .+..+..+..++++||.+.....   ...+++-.+|+..+++.....         ......++.+||.|+..++++|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            35568889999999998863211   234555677888777653211         112234567889999999999987


Q ss_pred             -cccC----hhhhcCCCccEEEeeCCcccccCCCCCcCcc---------hhhccCcccceeccCCCC---------cccc
Q 044855          106 -HVIP----SFLLQQDHLKFLDLSHNKLVGNFPICGKMDD---------GLRSSTSLEGLDISGNIP---------NWIG  162 (279)
Q Consensus       106 -~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------~~~~~~~L~~l~l~~~~~---------~~~~  162 (279)
                       ...|    ..+.+.+.|..|.+++|.+.....  ..+..         -...-+.|+.+....|-.         ..+.
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG--~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG--GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccch--hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence             3333    345567889999999987642221  11111         122234566666655411         1122


Q ss_pred             CCCCCcEEEccccEeeee-----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCCCchhh
Q 044855          163 NISTLRVLLMSKNYLEAN-----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGRIPYQI  223 (279)
Q Consensus       163 ~~~~L~~L~l~~~~l~~~-----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~~~~~~  223 (279)
                      .-..|+.+.+..|.+...     ....+..+++|+.|++.+|.++.              .|+.|.+.+|-+.......+
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            234677777777776432     11234567788888888887653              55777777776644433222


Q ss_pred             ------hcCcCCcEEEccCCcccccCChh-----h--hcccCCcEEEccCCEee
Q 044855          224 ------NELSNLHVLLLRGNSLQGHIPNE-----L--CQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       224 ------~~~~~L~~L~l~~n~~~~~~~~~-----~--~~~~~L~~L~l~~n~l~  264 (279)
                            ...|+|..|-..+|.+.+.....     +  ..+|-|..+.+.||.+.
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence                  13567777777777654332221     1  13566777777777776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.99  E-value=1.7e-06  Score=77.80  Aligned_cols=132  Identities=17%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             CcCcEEeccCcccCcccchhhh-cccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEE
Q 044855           43 TSLEYLDLSSINFQGTFSINSL-ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFL  121 (279)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  121 (279)
                      .+|++|+++|...-...+.... ..+|.|+.|.+.+-.....--...+..+|+|..||+++++++.+ .+++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            5666666666543222222222 34466666666543322211122345566666667766666655 455666666666


Q ss_pred             EeeCCcccccCCCCCcCcchhhccCcccceeccCCC-----------CccccCCCCCcEEEccccEeeee
Q 044855          122 DLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-----------PNWIGNISTLRVLLMSKNYLEAN  180 (279)
Q Consensus       122 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~~~~L~~L~l~~~~l~~~  180 (279)
                      .+.+-.+...     .....+..+++|+.||++...           .+.-..+|.|+.||.++..+.+.
T Consensus       201 ~mrnLe~e~~-----~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  201 SMRNLEFESY-----QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             hccCCCCCch-----hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            6665444311     112345556666666666430           11223478899999998876653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.89  E-value=1.7e-07  Score=81.86  Aligned_cols=119  Identities=24%  Similarity=0.202  Sum_probs=77.5

Q ss_pred             CCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855            3 SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML   82 (279)
Q Consensus         3 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   82 (279)
                      ++|.+. ....++.-++.++.|+|++|+++..  +.+..+++|++|||+.|.+. .++--....|. |+.|.+++|... 
T Consensus       172 syN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-  245 (1096)
T KOG1859|consen  172 SYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-  245 (1096)
T ss_pred             chhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-
Confidence            344444 4455666678888888888887732  26777888888888888776 33323333343 788888777521 


Q ss_pred             cccCCCCCCCCceeEEEecCCcCcccC--hhhhcCCCccEEEeeCCccc
Q 044855           83 QVKTESWHPTSQLKVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  129 (279)
                        ....+.++.+|+.|++++|-+....  ..++.+..|+.|++.+|.+.
T Consensus       246 --tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  246 --TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             --hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence              1233566778888888888764443  24556677888888888764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.88  E-value=9.5e-05  Score=52.25  Aligned_cols=109  Identities=16%  Similarity=0.243  Sum_probs=63.2

Q ss_pred             CCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCC
Q 044855           10 HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESW   89 (279)
Q Consensus        10 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   89 (279)
                      +...+|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +. .+....+..++.++.+.+..  ....+....|
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F   77 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAF   77 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc--cccccccccc
Confidence            3456888899999999885 455455667888889999998875 44 45556778887888888854  2445556677


Q ss_pred             CCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeC
Q 044855           90 HPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSH  125 (279)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~  125 (279)
                      ..+++|+.+.+..+ +..++. .+..+ +++.+.+..
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            78888888888664 555544 33344 777777764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.72  E-value=1.8e-06  Score=75.34  Aligned_cols=112  Identities=24%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             CCCCccEEEeeCCc-cccc-CCccccCCCcCcEEeccCc-ccCccc---chhhhcccccceeeeecCCcccccccCCCC-
Q 044855           17 HLTHLKVLDIFNNQ-LSGN-FPSTLTNFTSLEYLDLSSI-NFQGTF---SINSLANHSKLEVLLLSSGSNMLQVKTESW-   89 (279)
Q Consensus        17 ~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-   89 (279)
                      .++.|+.+.+..+. ++.. .......+++|+.|+++++ ......   .......+.+|+.++++++..........+ 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46778888887763 3321 2234567788888888773 111111   122345567788888877764333333222 


Q ss_pred             CCCCceeEEEecCCc-C--cccChhhhcCCCccEEEeeCCcc
Q 044855           90 HPTSQLKVLKLSDCQ-L--HVIPSFLLQQDHLKFLDLSHNKL  128 (279)
Q Consensus        90 ~~~~~L~~L~l~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~  128 (279)
                      ..+++|++|.+.+|. +  ..+......++.|++|+++++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            236788888877665 3  23344555677888888887654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.62  E-value=3.9e-06  Score=58.46  Aligned_cols=86  Identities=26%  Similarity=0.391  Sum_probs=46.3

Q ss_pred             CCCcEEEccccEeeeecccccc-CCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855          165 STLRVLLMSKNYLEANIPVQLN-HLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI  243 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (279)
                      ..|+..++++|.+.+ +|..|. .++..+              ++++++|++. .+|+.+..++.|+.++++.|++. ..
T Consensus        53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t--------------~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~  115 (177)
T KOG4579|consen   53 YELTKISLSDNGFKK-FPKKFTIKFPTAT--------------TLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AE  115 (177)
T ss_pred             ceEEEEecccchhhh-CCHHHhhccchhh--------------hhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cc
Confidence            445556666666655 333332 223333              3344444442 35555666666666666666666 55


Q ss_pred             ChhhhcccCCcEEEccCCEeeeecC
Q 044855          244 PNELCQLAKLRIMDLSNNIFSGSIP  268 (279)
Q Consensus       244 ~~~~~~~~~L~~L~l~~n~l~~~~p  268 (279)
                      |..+..+.++..|+.-+|.+. .+|
T Consensus       116 p~vi~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  116 PRVIAPLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             hHHHHHHHhHHHhcCCCCccc-cCc
Confidence            555555666666666666554 444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.61  E-value=7.8e-06  Score=57.01  Aligned_cols=93  Identities=25%  Similarity=0.369  Sum_probs=63.5

Q ss_pred             CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhh-cCcCCcEEEccCCcccccCC
Q 044855          166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN-ELSNLHVLLLRGNSLQGHIP  244 (279)
Q Consensus       166 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~  244 (279)
                      .+..++++.|.+.. ++...+.+....           .|+.+++++|.+ ..+|..|. ..+.++.+++++|++. .+|
T Consensus        28 E~h~ldLssc~lm~-i~davy~l~~~~-----------el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvP   93 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMY-IADAVYMLSKGY-----------ELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVP   93 (177)
T ss_pred             HhhhcccccchhhH-HHHHHHHHhCCc-----------eEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hch
Confidence            45566677766543 333333222111           344566666665 34666664 5678999999999999 778


Q ss_pred             hhhhcccCCcEEEccCCEeeeecCccccC
Q 044855          245 NELCQLAKLRIMDLSNNIFSGSIPSCLGN  273 (279)
Q Consensus       245 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  273 (279)
                      +.+..++.|+.|+++.|++. ..|+.+..
T Consensus        94 eE~Aam~aLr~lNl~~N~l~-~~p~vi~~  121 (177)
T KOG4579|consen   94 EELAAMPALRSLNLRFNPLN-AEPRVIAP  121 (177)
T ss_pred             HHHhhhHHhhhcccccCccc-cchHHHHH
Confidence            88999999999999999998 66655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00044  Score=58.03  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=38.6

Q ss_pred             cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      ..+++++.|++++|.++ .+|. +  -++|++|.+++|.-....+ ..+  ..+|+.|.+++|..+..++       .+|
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLP-------ESV  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccc-------ccc
Confidence            34677777777777666 4442 1  2357777777654321222 111  1456666666654332222       245


Q ss_pred             eEEEecCCc
Q 044855           96 KVLKLSDCQ  104 (279)
Q Consensus        96 ~~L~l~~~~  104 (279)
                      +.|.+.++.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00029  Score=59.06  Aligned_cols=125  Identities=19%  Similarity=0.249  Sum_probs=71.7

Q ss_pred             hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCCCCcEEEcccc-Eeeeeccccc
Q 044855          112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKN-YLEANIPVQL  185 (279)
Q Consensus       112 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l  185 (279)
                      +..+.+++.|++++|.+.       .++   .-+.+|+.|.++++     +|..+  .++|+.|.+++| .+.. .|   
T Consensus        48 ~~~~~~l~~L~Is~c~L~-------sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP---  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-------SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP---  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-------ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc---
Confidence            445788999999998765       222   12456888888865     23222  357899999988 4443 33   


Q ss_pred             cCCCCccEEeccCCc------CcccceEEEeecCccC-C-CCchhhhcC-cCCcEEEccCCcccccCChhhhcccCCcEE
Q 044855          186 NHLKSLELIDIFENS------LSSKLITLDLRDNKFF-G-RIPYQINEL-SNLHVLLLRGNSLQGHIPNELCQLAKLRIM  256 (279)
Q Consensus       186 ~~~~~L~~l~l~~~~------~~~~L~~L~l~~~~~~-~-~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  256 (279)
                         ++|+.|++..+.      ++++|+.|.+.++.-. . ..+   ..+ ++|+.|++++|... ..|..+.  .+|+.|
T Consensus       112 ---~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L  182 (426)
T PRK15386        112 ---ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI  182 (426)
T ss_pred             ---cccceEEeCCCCCcccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence               245555554443      2336666666433210 0 011   112 46778888777754 3333332  457777


Q ss_pred             EccCC
Q 044855          257 DLSNN  261 (279)
Q Consensus       257 ~l~~n  261 (279)
                      +++.|
T Consensus       183 ~ls~n  187 (426)
T PRK15386        183 TLHIE  187 (426)
T ss_pred             Eeccc
Confidence            77665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.40  E-value=4.8e-05  Score=58.87  Aligned_cols=115  Identities=21%  Similarity=0.262  Sum_probs=75.7

Q ss_pred             CCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchh-hhcccccceeeeecCCcccccccCCCC
Q 044855           11 LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSIN-SLANHSKLEVLLLSSGSNMLQVKTESW   89 (279)
Q Consensus        11 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~   89 (279)
                      +......+..|+.+++.+..++ +. ..|-.+|+|++|.++.|......... ...++++|+++++++|.+..--.....
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            4444556777888888887766 22 23667889999999999444333333 345669999999998875432223334


Q ss_pred             CCCCceeEEEecCCcCcccC----hhhhcCCCccEEEeeCCc
Q 044855           90 HPTSQLKVLKLSDCQLHVIP----SFLLQQDHLKFLDLSHNK  127 (279)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~  127 (279)
                      ..+.+|..|++.+|..+.+.    ..+..+++|++|+-....
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            66778888888888765443    234456888877765544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.34  E-value=0.00016  Score=56.07  Aligned_cols=113  Identities=23%  Similarity=0.225  Sum_probs=63.7

Q ss_pred             CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCC-CCCCCceeEEEecCCcCcccC--hh
Q 044855           35 FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTES-WHPTSQLKVLKLSDCQLHVIP--SF  111 (279)
Q Consensus        35 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~  111 (279)
                      +......+..|+.+++.++.++   ....+..+++|++|.++.|.......... ...+|+|+++++++|++..+.  ..
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt---t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT---TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhcccee---ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            3333444556666666666544   33456677788888888774322222221 234488888888888875432  13


Q ss_pred             hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceec
Q 044855          112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDI  153 (279)
Q Consensus       112 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l  153 (279)
                      +..+.+|..|++..|......   ..-...+.-++.|.+++-
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~---dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLD---DYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcchhhhhcccCCccccc---cHHHHHHHHhhhhccccc
Confidence            455677777888877654311   111223344555666653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.26  E-value=0.0014  Score=46.16  Aligned_cols=106  Identities=19%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             cCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccccc
Q 044855            6 NFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVK   85 (279)
Q Consensus         6 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   85 (279)
                      .+..+...+|..+++|+.+.+.++ +......+|.++++++.+.+.. .+. .+....+..+++++.+.+..+  ...+.
T Consensus        22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~--~~~i~   96 (129)
T PF13306_consen   22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN--ITEIG   96 (129)
T ss_dssp             T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT---BEEH
T ss_pred             CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc--ccEEc
Confidence            445566778999999999999885 5545556788998999999976 333 445567888999999999654  45667


Q ss_pred             CCCCCCCCceeEEEecCCcCcccCh-hhhcCCCc
Q 044855           86 TESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHL  118 (279)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L  118 (279)
                      ...+..+ +|+.+.+.. .+..++. .+..+++|
T Consensus        97 ~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   97 SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             hhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7778887 999998876 4444543 44455555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.20  E-value=0.00025  Score=33.07  Aligned_cols=22  Identities=45%  Similarity=0.715  Sum_probs=17.1

Q ss_pred             CCcEEEccCCEeeeecCccccCC
Q 044855          252 KLRIMDLSNNIFSGSIPSCLGNV  274 (279)
Q Consensus       252 ~L~~L~l~~n~l~~~~p~~~~~~  274 (279)
                      +|++||+++|.++ .+|+.|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788899999888 888877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=2.3e-05  Score=61.29  Aligned_cols=81  Identities=21%  Similarity=0.190  Sum_probs=37.1

Q ss_pred             CcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCccE
Q 044855           43 TSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHLKF  120 (279)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~  120 (279)
                      .+.+.|+.+||.+.+   .....+|+.|++|.++-|.+.+   ...+..+++|+.|.|+.|.|..+..  -+.++|+|+.
T Consensus        19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCCCccH---HHHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            344445555554431   1233445555555554443221   1123445555555555555544443  3344555555


Q ss_pred             EEeeCCccc
Q 044855          121 LDLSHNKLV  129 (279)
Q Consensus       121 L~l~~~~~~  129 (279)
                      |.+..|...
T Consensus        93 LWL~ENPCc  101 (388)
T KOG2123|consen   93 LWLDENPCC  101 (388)
T ss_pred             HhhccCCcc
Confidence            555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.87  E-value=0.00017  Score=63.04  Aligned_cols=208  Identities=23%  Similarity=0.180  Sum_probs=119.9

Q ss_pred             cccCCCCccEEEeeCC-cccccC----CccccCCCcCcEEeccCcc-cCcccchhhh-cccccceeeeecCCcc-ccccc
Q 044855           14 CLNHLTHLKVLDIFNN-QLSGNF----PSTLTNFTSLEYLDLSSIN-FQGTFSINSL-ANHSKLEVLLLSSGSN-MLQVK   85 (279)
Q Consensus        14 ~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~~-~~~~~   85 (279)
                      ....+++|+.|++.++ ......    ......+++|+.++++.+. ++ ......+ ..++.|+.|.+..|.. .....
T Consensus       209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            3457899999999873 221111    1234557999999999997 55 3333333 4489999999877764 22233


Q ss_pred             CCCCCCCCceeEEEecCCcC---cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------
Q 044855           86 TESWHPTSQLKVLKLSDCQL---HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------  156 (279)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------  156 (279)
                      ......+++|++|++++|..   ..+......+++++.+.+.....                +..++.+.+.+.      
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------------c~~l~~~~l~~~~~~~~d  351 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------------CPSLTDLSLSGLLTLTSD  351 (482)
T ss_pred             HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------------CccHHHHHHHHhhccCch
Confidence            33446788999999998855   22333455678777766544321                222333332221      


Q ss_pred             -C-CccccCCCCCcEEEccccEeeeec-cccccCCCCcc-EEeccCCcCcccceEEEeecCccC-CCCchhhhc-CcCCc
Q 044855          157 -I-PNWIGNISTLRVLLMSKNYLEANI-PVQLNHLKSLE-LIDIFENSLSSKLITLDLRDNKFF-GRIPYQINE-LSNLH  230 (279)
Q Consensus       157 -~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~-~~~L~  230 (279)
                       . .-....++.++.+.+..+...... ...+..++.|. .+........ .++.|++..+... ......... +..+.
T Consensus       352 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~-~l~~L~l~~~~~~t~~~l~~~~~~~~~~~  430 (482)
T KOG1947|consen  352 DLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSD-SLRVLNLSDCRLVTDKGLRCLADSCSNLK  430 (482)
T ss_pred             hHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCC-ccceEecccCccccccchHHHhhhhhccc
Confidence             1 112456788888888887744433 24566777773 2222222221 2677777777542 222222222 56677


Q ss_pred             EEEccCCcc
Q 044855          231 VLLLRGNSL  239 (279)
Q Consensus       231 ~L~l~~n~~  239 (279)
                      .+++.++..
T Consensus       431 ~l~~~~~~~  439 (482)
T KOG1947|consen  431 DLDLSGCRV  439 (482)
T ss_pred             cCCccCccc
Confidence            777777763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=3.3e-05  Score=60.41  Aligned_cols=101  Identities=23%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE
Q 044855           18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV   97 (279)
Q Consensus        18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   97 (279)
                      +.+.+.|+..+|.++...  ...+|+.|++|.|+-|.++   ....+..|++|++|.+..|.+..-.....+.++|+|++
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            456777888888877432  3467888888888888776   34567788888888888876554445556688888998


Q ss_pred             EEecCCcC-ccc-----ChhhhcCCCccEEEe
Q 044855           98 LKLSDCQL-HVI-----PSFLLQQDHLKFLDL  123 (279)
Q Consensus        98 L~l~~~~~-~~~-----~~~~~~~~~L~~L~l  123 (279)
                      |.+..|.. ..-     ...+..+|+|+.|+-
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            88877654 111     134556788887753

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.88  E-value=0.0045  Score=26.68  Aligned_cols=14  Identities=50%  Similarity=0.752  Sum_probs=7.1

Q ss_pred             cCCcEEEccCCEee
Q 044855          251 AKLRIMDLSNNIFS  264 (279)
Q Consensus       251 ~~L~~L~l~~n~l~  264 (279)
                      ++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35666777777665

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.0086  Score=27.73  Aligned_cols=20  Identities=35%  Similarity=0.685  Sum_probs=12.4

Q ss_pred             CccEEEeeCCcccccCCcccc
Q 044855           20 HLKVLDIFNNQLSGNFPSTLT   40 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~   40 (279)
                      +|++|++++|.++ .+|..|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4667777777766 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.44  E-value=4.2e-05  Score=66.05  Aligned_cols=105  Identities=29%  Similarity=0.249  Sum_probs=60.1

Q ss_pred             ccCCCCCcEEEccccEeee----ecccccc----CCCCccEEeccCCcCcc---------------cceEEEeecCccCC
Q 044855          161 IGNISTLRVLLMSKNYLEA----NIPVQLN----HLKSLELIDIFENSLSS---------------KLITLDLRDNKFFG  217 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~~----~~~~~l~----~~~~L~~l~l~~~~~~~---------------~L~~L~l~~~~~~~  217 (279)
                      +.....++.++++.|.+..    ..+..+.    ...+++.+++.+|.++.               .+..+++..|++.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            3345556666666665422    1112222    35566666666666553               24457777777654


Q ss_pred             CCch----hhhcC-cCCcEEEccCCcccccCChhh----hcccCCcEEEccCCEeee
Q 044855          218 RIPY----QINEL-SNLHVLLLRGNSLQGHIPNEL----CQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       218 ~~~~----~~~~~-~~L~~L~l~~n~~~~~~~~~~----~~~~~L~~L~l~~n~l~~  265 (279)
                      ....    .+..+ +.++.++++.|.+++.....+    ..++.++.+.+.+|++..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            4222    22334 566788888888776544433    346778888888887753

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.33  E-value=0.0019  Score=48.36  Aligned_cols=80  Identities=21%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             CcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCC-CCCceeEEEecCC-cCcccC-hhhhcCCCccEE
Q 044855           45 LEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWH-PTSQLKVLKLSDC-QLHVIP-SFLLQQDHLKFL  121 (279)
Q Consensus        45 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~-~~~~~~~~L~~L  121 (279)
                      ++.++-+++.+. ......+..++.++.|.+.+|....+-..+.+. ..++|+.|++++| .|++-. ..+..+++|+.|
T Consensus       103 IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            444555555443 333344455555555555555443333322222 3456666666665 333332 244556666666


Q ss_pred             EeeC
Q 044855          122 DLSH  125 (279)
Q Consensus       122 ~l~~  125 (279)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.0028  Score=47.50  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=55.7

Q ss_pred             CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhh-hcCcCCcEEEccCCc-cccc
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQI-NELSNLHVLLLRGNS-LQGH  242 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~-~~~~  242 (279)
                      ..++.++.+++.+.......+..++.++.+.+.+|.-.+             +..-+-+ .-.++|+.|++++|+ |++.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-------------D~~L~~l~~~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-------------DWCLERLGGLAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh-------------hHHHHHhcccccchheeeccCCCeechh
Confidence            457888888887776666667777776666655543111             1111111 135789999999885 8877


Q ss_pred             CChhhhcccCCcEEEccC
Q 044855          243 IPNELCQLAKLRIMDLSN  260 (279)
Q Consensus       243 ~~~~~~~~~~L~~L~l~~  260 (279)
                      ....+..+++|+.|.+.+
T Consensus       168 GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  168 GLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHHHHhhhhHHHHhcC
Confidence            888888888888887765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.26  E-value=0.014  Score=27.57  Aligned_cols=18  Identities=28%  Similarity=0.296  Sum_probs=7.6

Q ss_pred             cCCcEEEccCCcccccCC
Q 044855          227 SNLHVLLLRGNSLQGHIP  244 (279)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~  244 (279)
                      ++|+.|++++|++++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            345555555555544333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.90  E-value=0.16  Score=24.35  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=14.7

Q ss_pred             CceeEEEecCCcCcccChhhh
Q 044855           93 SQLKVLKLSDCQLHVIPSFLL  113 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~~  113 (279)
                      ++|++|++.+|.++.+|...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            567777777777777776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.90  E-value=0.16  Score=24.35  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=14.7

Q ss_pred             CceeEEEecCCcCcccChhhh
Q 044855           93 SQLKVLKLSDCQLHVIPSFLL  113 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~~  113 (279)
                      ++|++|++.+|.++.+|...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            567777777777777776543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.50  E-value=0.0028  Score=54.96  Aligned_cols=79  Identities=25%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             CCCCcEEEccccEeeee----ccccccCCCC-ccEEeccCCcCcc---------------cceEEEeecCccCCCCc---
Q 044855          164 ISTLRVLLMSKNYLEAN----IPVQLNHLKS-LELIDIFENSLSS---------------KLITLDLRDNKFFGRIP---  220 (279)
Q Consensus       164 ~~~L~~L~l~~~~l~~~----~~~~l~~~~~-L~~l~l~~~~~~~---------------~L~~L~l~~~~~~~~~~---  220 (279)
                      ..++++|.+.+|.++..    ....+...+. +..+++..|.+.+               .++.+++..|++++...   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            44555566655554421    1122333333 4445665555543               55677888888766543   


Q ss_pred             -hhhhcCcCCcEEEccCCccccc
Q 044855          221 -YQINELSNLHVLLLRGNSLQGH  242 (279)
Q Consensus       221 -~~~~~~~~L~~L~l~~n~~~~~  242 (279)
                       ..+..++.++.+.+.+|.+.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccccH
Confidence             3345678889999999988754

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.18  E-value=0.18  Score=24.26  Aligned_cols=19  Identities=32%  Similarity=0.595  Sum_probs=15.2

Q ss_pred             cCCcEEEccCCEeeeecCcc
Q 044855          251 AKLRIMDLSNNIFSGSIPSC  270 (279)
Q Consensus       251 ~~L~~L~l~~n~l~~~~p~~  270 (279)
                      ++|+.|++++|+++ .+|+.
T Consensus         2 ~~L~~L~vs~N~Lt-~LPeL   20 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPEL   20 (26)
T ss_pred             cccceeecCCCccc-cCccc
Confidence            46788999999988 88863

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.26  E-value=0.025  Score=43.61  Aligned_cols=98  Identities=16%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             CCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855            3 SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML   82 (279)
Q Consensus         3 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   82 (279)
                      +-..+..++.-.++.....+.||++.+++- .....|..+..+..++++.|.+.  ..+..+.+...+.++....|. . 
T Consensus        26 s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~-~-  100 (326)
T KOG0473|consen   26 SLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNN-H-  100 (326)
T ss_pred             CHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccc-h-
Confidence            333444444456677888889999988876 45556777888888888888764  233566666667777665553 2 


Q ss_pred             cccCCCCCCCCceeEEEecCCcC
Q 044855           83 QVKTESWHPTSQLKVLKLSDCQL  105 (279)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~  105 (279)
                      .-.+.+++..+.++++++.++.+
T Consensus       101 ~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  101 SQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hhCCccccccCCcchhhhccCcc
Confidence            23345678888888888888765

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.13  E-value=0.5  Score=23.21  Aligned_cols=19  Identities=26%  Similarity=0.207  Sum_probs=10.2

Q ss_pred             cCCcEEEccCCcccccCCh
Q 044855          227 SNLHVLLLRGNSLQGHIPN  245 (279)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~~  245 (279)
                      ++|+.|++++|.+.+....
T Consensus         2 ~~L~~LdL~~N~i~~~G~~   20 (28)
T smart00368        2 PSLRELDLSNNKLGDEGAR   20 (28)
T ss_pred             CccCEEECCCCCCCHHHHH
Confidence            3456666666666544333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.85  E-value=0.12  Score=40.00  Aligned_cols=54  Identities=19%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccC
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ   56 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   56 (279)
                      |++.|.+. .+|..+.++.+++.+++..|... ..|.++...|++++++..++++.
T Consensus        71 ~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   71 DLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            34555555 56667777777777777777666 77888888888888888888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-12

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 131/315 (41%), Gaps = 52/315 (16%)
Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+SSNNF   +P  L   + L+ LDI  N+LSG+F   ++  T L+ L++SS  F G   
Sbjct: 206 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSF-------- 111
              L +   L+ L L+      ++          L  L LS    +  +P F        
Sbjct: 265 PLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 112 -----------------LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS 154
                            LL+   LK LDLS N+  G  P     +     S SL  LD+S
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-----ESLTNLSASLLTLDLS 376
Query: 155 GN------IPNWIGNI-STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS----- 202
            N      +PN   N  +TL+ L +  N     IP  L++   L  + +  N LS     
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 203 -----SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMD 257
                SKL  L L  N   G IP ++  +  L  L+L  N L G IP+ L     L  + 
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 258 LSNNIFSGSIPSCLG 272
           LSNN  +G IP  +G
Sbjct: 497 LSNNRLTGEIPKWIG 511

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 132/317 (41%), Gaps = 52/317 (16%)
Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+SSNNF   +P  L   + L+ LDI  N+LSG+F   ++  T L+ L++SS  F G   
Sbjct: 203 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSF-------- 111
              L +   L+ L L+      ++          L  L LS    +  +P F        
Sbjct: 262 PLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 112 -----------------LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS 154
                            LL+   LK LDLS N+  G  P     +     S SL  LD+S
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-----ESLTNLSASLLTLDLS 373
Query: 155 GN------IPNWIGNI-STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS----- 202
            N      +PN   N  +TL+ L +  N     IP  L++   L  + +  N LS     
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 203 -----SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMD 257
                SKL  L L  N   G IP ++  +  L  L+L  N L G IP+ L     L  + 
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 258 LSNNIFSGSIPSCLGNV 274
           LSNN  +G IP  +G +
Sbjct: 494 LSNNRLTGEIPKWIGRL 510

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 124/290 (42%), Gaps = 45/290 (15%)
Query: 21  LKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI-NSLANHSKLEVLLLSSGS 79
           L   D  N    G    T T    +  LDLS +N    + I +SLAN   L  L +   +
Sbjct: 28  LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87
Query: 80  NMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGNFP----- 133
           N++     +    +QL  L ++   +   IP FL Q   L  LD S+N L G  P     
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 134 -------------ICGKMDDG------LRSSTSLEGLDISGNIPNWIGNISTLRVLLMSK 174
                        I G + D       L +S ++    ++G IP    N++ L  + +S+
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206
Query: 175 NYLEANIPVQLNHLKSLELIDIFENSL---------SSKLITLDLRDNKFFGRIPYQINE 225
           N LE +  V     K+ + I + +NSL         S  L  LDLR+N+ +G +P  + +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 226 LSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLS----NNIFSGS-IPSC 270
           L  LH L +  N+L G IP    Q   L+  D+S    N    GS +P+C
Sbjct: 267 LKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLCGSPLPAC 312

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  200 bits (510), Expect = 3e-59
 Identities = 91/297 (30%), Positives = 137/297 (46%), Gaps = 29/297 (9%)

Query: 1   DLSSNNFEGHLPQCL-NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
            L+ N F G +P  L      L  LD+  N   G  P    + + LE L LSS NF G  
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 60  SINSLANHSKLEVLLLSSGSNML--QVKTESWHPTSQLKVLKLSDCQLH-VIPSFL--LQ 114
            +++L     L+VL LS   N    ++     + ++ L  L LS       I   L    
Sbjct: 335 PMDTLLKMRGLKVLDLSF--NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 115 QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRV 169
           ++ L+ L L +N   G  P        L + + L  L +S N     IP+ +G++S LR 
Sbjct: 393 KNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 170 LLMSKNYLEANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRI 219
           L +  N LE  IP +L ++K+LE + +  N L+          + L  + L +N+  G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 220 PYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF 276
           P  I  L NL +L L  NS  G+IP EL     L  +DL+ N+F+G+IP+ +   S 
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (428), Expect = 8e-48
 Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 38/299 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPS--TLTNFTSLEYLDLSSINFQGT 58
            LS+++  G +         L  LD+  N LSG   +  +L + + L++L++SS      
Sbjct: 83  FLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141

Query: 59  FSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT----SQLKVLKLSDCQLH-VIPSFLL 113
             ++     + LEVL LS  +N +               +LK L +S  ++   +     
Sbjct: 142 GKVSGGLKLNSLEVLDLS--ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199

Query: 114 QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLR 168
              +L+FLD+S N      P  G         ++L+ LDISGN         I   + L+
Sbjct: 200 V--NLEFLDVSSNNFSTGIPFLGDC-------SALQHLDISGNKLSGDFSRAISTCTELK 250

Query: 169 VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS-----------SKLITLDLRDNKFFG 217
           +L +S N     IP     LKSL+ + + EN  +             L  LDL  N F+G
Sbjct: 251 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 218 RIPYQINELSNLHVLLLRGNSLQGHIPNE-LCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
            +P      S L  L L  N+  G +P + L ++  L+++DLS N FSG +P  L N+S
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  166 bits (423), Expect = 4e-47
 Identities = 86/282 (30%), Positives = 121/282 (42%), Gaps = 32/282 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D+SSNNF   +P  L   + L+ LDI  N+LSG+F   ++  T L+ L++SS  F G   
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 61  INSLANHSKLEVLLLSSGSNML--QVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDH 117
              L     L+ L L+   N    ++          L  L LS    +  +P F      
Sbjct: 265 PLPL---KSLQYLSLA--ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNIST-LRVLL 171
           L+ L LS N   G  P      D L     L+ LD+S N     +P  + N+S  L  L 
Sbjct: 320 LESLALSSNNFSGELP-----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHV 231
           +S N     I   L              +  + L  L L++N F G+IP  ++  S L  
Sbjct: 375 LSSNNFSGPILPNLC------------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
           L L  N L G IP+ L  L+KLR + L  N+  G IP  L  
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (414), Expect = 8e-46
 Identities = 83/298 (27%), Positives = 126/298 (42%), Gaps = 33/298 (11%)

Query: 1   DLSSNNFE---GHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQG 57
           DLSS         +   L  LT L+ L + N+ ++G+         SL  LDLS  +  G
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSG 114

Query: 58  TF-SINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQ 115
              ++ SL + S L+ L +SS +     K       + L+VL LS   +        +  
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 116 D---HLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTL 167
           D    LK L +S NK+ G+  +            +LE LD+S N     IP ++G+ S L
Sbjct: 175 DGCGELKHLAISGNKISGDVDVS--------RCVNLEFLDVSSNNFSTGIP-FLGDCSAL 225

Query: 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS--------SKLITLDLRDNKFFGRI 219
           + L +S N L  +    ++    L+L++I  N             L  L L +NKF G I
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285

Query: 220 PYQI-NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP-SCLGNVS 275
           P  +      L  L L GN   G +P      + L  + LS+N FSG +P   L  + 
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  152 bits (387), Expect = 3e-42
 Identities = 74/290 (25%), Positives = 112/290 (38%), Gaps = 46/290 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L  N  EG +PQ L ++  L+ L +  N L+G  PS L+N T+L ++ LS+    G   
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLK 119
              +     L +L LS+                               IP+ L     L 
Sbjct: 508 -KWIGRLENLAILKLSN-------------------------NSFSGNIPAELGDCRSLI 541

Query: 120 FLDLSHNKLVGNFPIC-GKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           +LDL+ N   G  P    K       S  +    I+G    +I N    +    + N LE
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQ------SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 179 AN--IPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQINEL 226
                  QLN L +    +I                  ++ LD+  N   G IP +I  +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF 276
             L +L L  N + G IP+E+  L  L I+DLS+N   G IP  +  ++ 
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (307), Expect = 2e-31
 Identities = 64/275 (23%), Positives = 101/275 (36%), Gaps = 50/275 (18%)

Query: 16  NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLL 75
           + +T + +     N       S+L + T LE L LS+ +  G  S++     + L  L L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDL 107

Query: 76  SSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC 135
           S   N L     +                             LKFL++S N L     + 
Sbjct: 108 S--RNSLSGPVTTLTSLGSCS--------------------GLKFLNVSSNTLDFPGKV- 144

Query: 136 GKMDDGLRSSTSLEGLDISGN-----IPNWI---GNISTLRVLLMSKNYLEANIPVQLNH 187
                G     SLE LD+S N                  L+ L +S N +  ++   ++ 
Sbjct: 145 ----SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198

Query: 188 LKSLELIDIFENSLS---------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238
             +LE +D+  N+ S         S L  LD+  NK  G     I+  + L +L +  N 
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 239 LQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
             G IP    +   L+ + L+ N F+G IP  L  
Sbjct: 259 FVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSG 291

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (302), Expect = 9e-31
 Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 30/251 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            LS+N   G +P+ +  L +L +L + NN  SGN P+ L +  SL +LDL++  F GT  
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLK 119
             ++   S        +G   + +K +      +      +  +   +    L +     
Sbjct: 556 -AAMFKQSGKIAANFIAGKRYVYIKNDG---MKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSK 174
             +++     G+            ++ S+  LD+S N     IP  IG++  L +L +  
Sbjct: 612 PCNITSRVYGGHTS------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLL 234
           N +  +IP ++  L+ L                LDL  NK  GRIP  ++ L+ L  + L
Sbjct: 666 NDISGSIPDEVGDLRGLN--------------ILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 235 RGNSLQGHIPN 245
             N+L G IP 
Sbjct: 712 SNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQG--- 57
           +L  N+  G +P  +  L  L +LD+ +N+L G  P  ++  T L  +DLS+ N  G   
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 58  ------TFSINSLANHSKL 70
                 TF      N+  L
Sbjct: 722 EMGQFETFPPAKFLNNPGL 740

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (325), Expect = 1e-35
 Identities = 68/288 (23%), Positives = 100/288 (34%), Gaps = 62/288 (21%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNF--PSTLTNFTSLEYLDLSSIN-FQG 57
           D  +  + G L         +  LD+    L   +  PS+L N   L +L +  IN   G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 58  TF--SINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQ 114
               +I  L                            +QL  L ++   +   IP FL Q
Sbjct: 92  PIPPAIAKL----------------------------TQLHYLYITHTNVSGAIPDFLSQ 123

Query: 115 QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTL-R 168
              L  LD S+N L G  P        + S  +L G+   GN     IP+  G+ S L  
Sbjct: 124 IKTLVTLDFSYNALSGTLP------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 169 VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSN 228
            + +S+N L   IP    +L                L  +DL  N   G          N
Sbjct: 178 SMTISRNRLTGKIPPTFANL---------------NLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF 276
              + L  NSL   +  ++     L  +DL NN   G++P  L  + F
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (304), Expect = 1e-32
 Identities = 61/274 (22%), Positives = 103/274 (37%), Gaps = 52/274 (18%)

Query: 3   SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI- 61
             NN  G +P  +  LT L  L I +  +SG  P  L+   +L  LD S     G  ++ 
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--TLP 142

Query: 62  NSLANHSKLEVLLLSSGSNML--QVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHL 118
            S+++   L  +      N +   +       +     + +S  +L   IP       +L
Sbjct: 143 PSISSLPNLVGITFD--GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNL 199

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
            F+DLS N L                          G+     G+    + + ++KN L 
Sbjct: 200 AFVDLSRNML-------------------------EGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238
            ++                +  LS  L  LDLR+N+ +G +P  + +L  LH L +  N+
Sbjct: 235 FDLG---------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 239 LQGHIPNELCQLAKLRIMDLSNNIF--SGSIPSC 270
           L G IP     L +  +   +NN       +P+C
Sbjct: 280 LCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 94.5 bits (236), Expect = 7e-23
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 28/163 (17%)

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-------IPNWIGNISTLRVLLMS 173
            D  +   +G         D    +  +  LD+SG        IP+ + N+  L  L + 
Sbjct: 31  TDCCNRTWLGVLC------DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 174 K-NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL 232
             N L   IP  +  L              ++L  L +      G IP  ++++  L  L
Sbjct: 85  GINNLVGPIPPAIAKL--------------TQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 233 LLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
               N+L G +P  +  L  L  +    N  SG+IP   G+ S
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 199 NSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQG--HIPNELCQLAKLRIM 256
            +LSS L T D  +  + G +     +   ++ L L G +L     IP+ L  L  L  +
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 257 DLSN-NIFSGSIPSCLGN 273
            +   N   G IP  +  
Sbjct: 82  YIGGINNLVGPIPPAIAK 99

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (316), Expect = 8e-33
 Identities = 46/297 (15%), Positives = 98/297 (32%), Gaps = 32/297 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN----FPSTLTNFTSLEYLDLSSINFQ 56
            L      G +P  +  LT L+VL + ++    N     P  ++   S E      +++Q
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 57  GTF-SINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ 115
            TF   +   + S L    ++S      +K  S   T +   +      +  +   +++ 
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNITFVSKAVMRL 205

Query: 116 DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKN 175
             L+   + ++  V               + + E             N+  L  + +   
Sbjct: 206 TKLRQFYMGNSPFVAENIC------EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 176 YLEANIPVQLNHLKSLELIDIFENSLSS------------------KLITLDLRDNKFF- 216
                +P  L  L  ++LI++  N   S                  K+  + +  N    
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 217 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
             +   + ++  L +L    N L+G +P       KL  ++L+ N  +    +  G 
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGF 375

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  115 bits (290), Expect = 3e-29
 Identities = 49/315 (15%), Positives = 99/315 (31%), Gaps = 47/315 (14%)

Query: 1   DLSSNNF--------EGHLPQCLNHLTHLKVLDIFNNQL-SGNFPSTLTNFTSLEYLDLS 51
           +++ N          +            ++++ I  N L +    ++L     L  L+  
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 52  SINFQGTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPS 110
               +G   + +  +  KL  L L+   N +  +       T Q++ L  +  +L  IP+
Sbjct: 339 YNQLEG--KLPAFGSEIKLASLNLAY--NQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 111 --FLLQQDHLKFLDLSHNKLVGNFP-ICGKMDDGLRSSTSLEGLDISGN-----IPNWIG 162
                    +  +D S+N++          +D       ++  +++S N           
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 163 NISTLRVLLMSKNYLE-------ANIPVQLNHLKSLELIDIFENSLSS-----------K 204
             S L  + +  N L         +      +   L  ID+  N L+             
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 205 LITLDLRDNKFFGRIPYQINELSNL------HVLLLRGNSLQGHIPNELCQLAKLRIMDL 258
           L+ +DL  N F  + P Q    S L      +    +GN      P  +     L  + +
Sbjct: 515 LVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 259 SNNIFSGSIPSCLGN 273
            +N           N
Sbjct: 574 GSNDIRKVNEKITPN 588

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (264), Expect = 7e-26
 Identities = 43/287 (14%), Positives = 93/287 (32%), Gaps = 27/287 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +   N  EG LP        L  L++  NQ++    +       +E L  +    +   +
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 61  INSLANHSKLEVLLLSS------GSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQ 114
           I    + S +  +  S                 +      +  + LS+ Q+   P  L  
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 115 Q-DHLKFLDLSHNKLVGNFP-ICGKMDDGLRSSTSLEGLDISGN----IPN--WIGNIST 166
               L  ++L  N L           ++  +++  L  +D+  N    + +      +  
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 167 LRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINEL 226
           L  + +S N      P Q  +  +L+   I            D + N+     P  I   
Sbjct: 515 LVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQ--------RDAQGNRTLREWPEGITLC 565

Query: 227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
            +L  L +  N ++  +  ++     + ++D+ +N       S +  
Sbjct: 566 PSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (260), Expect = 2e-25
 Identities = 37/284 (13%), Positives = 83/284 (29%), Gaps = 41/284 (14%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQG---TFSINSLANHSKLE 71
           LN    +  L +     SG  P  +   T LE L L S   +     F    ++ +   E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 72  VLLLS-------------------------SGSNMLQVKTESWHPTSQLKVLKLSDCQLH 106
                                         +     +   +S   T +   +      + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 107 VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNIST 166
            +   +++   L+   + ++  V               + + E             N+  
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENIC------EAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 167 LRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINEL 226
           L  + +        +P  L  L  ++LI++  N   S          K   +        
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS------GEQLKDDWQALADAPVG 304

Query: 227 SNLHVLLLRGNSLQ-GHIPNELCQLAKLRIMDLSNNIFSGSIPS 269
             + ++ +  N+L+   +   L ++ KL +++   N   G +P+
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 8e-25
 Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 59/302 (19%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +              ++L  L  ++++N       P+ L     ++ ++++         
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHL 118
           +             L+                 +++++ +    L    + + L +   L
Sbjct: 291 LKDDWQA-------LADAPVG-----------EKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMS 173
             L+  +N+L G  P          S   L  L+++ N       N+ G    +  L  +
Sbjct: 333 GMLECLYNQLEGKLP-------AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 174 KNYLEANIP--VQLNHLKSLELIDIFENSLSS-----------------KLITLDLRDNK 214
            N L+  IP       +  +  ID   N + S                  + +++L +N+
Sbjct: 386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 215 FFGRIPYQINELSNLHVLLLRGNSLQG-------HIPNELCQLAKLRIMDLSNNIFSGSI 267
                    +  S L  + L GN L                    L  +DL  N  +   
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 268 PS 269
             
Sbjct: 505 DD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 36/255 (14%), Positives = 71/255 (27%), Gaps = 53/255 (20%)

Query: 1   DLSSNNFEG-------HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSI 53
           D S N            L        ++  +++ NNQ+S       +  + L  ++L   
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 54  NFQG------TFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS--QLKVLKLSDCQL 105
                          +  N   L  + L    N L   ++ +  T+   L  + LS    
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRF--NKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 106 HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNIS 165
              P+  L    LK   + + +         +  +G+    SL  L I  N      +I 
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN------DIR 579

Query: 166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINE 225
            +                                 ++  +  LD++DN         +  
Sbjct: 580 KV------------------------------NEKITPNISVLDIKDNPNISIDLSYVCP 609

Query: 226 LSNLHVLLLRGNSLQ 240
                + +L  +  Q
Sbjct: 610 YIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 11/130 (8%), Positives = 31/130 (23%), Gaps = 17/130 (13%)

Query: 160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS--------------SKL 205
            + +   +  L +        +P  +  L  LE++ +  +                    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 206 ITLDLRDNKFFGRIPYQI--NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIF 263
                    +           + S+L    +  +  Q  I        K   +   +N  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 264 SGSIPSCLGN 273
           +  +   +  
Sbjct: 196 T-FVSKAVMR 204

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (308), Expect = 1e-31
 Identities = 57/306 (18%), Positives = 115/306 (37%), Gaps = 41/306 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            +S  +           L  L+ L++ +N + G   +  T   +L+YL LS+ +F    +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN-SFTSLRT 369

Query: 61  INSLA----NHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVI--PSFLL 113
           + +       HS L +L L+   N +  ++++++     L+VL L   ++          
Sbjct: 370 LTNETFVSLAHSPLHILNLTK--NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 114 QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-------IPNWIGNIST 166
             +++  + LS+NK +          +      SL+ L +           P+    +  
Sbjct: 428 GLENIFEIYLSYNKYLQLTR------NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 167 LRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS------------------SKLITL 208
           L +L +S N +       L  L+ LE++D+  N+L+                  S L  L
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 209 DLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
           +L  N F         +L  L ++ L  N+L     +       L+ ++L  N+ +    
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 269 SCLGNV 274
              G  
Sbjct: 602 KVFGPA 607

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (301), Expect = 1e-30
 Identities = 58/291 (19%), Positives = 102/291 (35%), Gaps = 27/291 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L+ N             + L  LD+  N +S   P        L+ L+L         S
Sbjct: 31  NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LS 89

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
             + A  + L  L L   +++ ++K   +     L  L LS   L         Q ++L+
Sbjct: 90  DKTFAFCTNLTELHL-MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSK 174
            L LS+NK+          +  + +++SL+ L++S N      P     I  L  L ++ 
Sbjct: 149 ELLLSNNKIQALKSE----ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 175 NYLEANIP------VQLNHLKSLEL---------IDIFENSLSSKLITLDLRDNKFFGRI 219
             L  ++       +    +++L L            F     + L  LDL  N      
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 220 PYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC 270
                 L  L    L  N++Q    + L  L  +R ++L  +    SI   
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (290), Expect = 4e-29
 Identities = 54/312 (17%), Positives = 105/312 (33%), Gaps = 45/312 (14%)

Query: 1   DLSSNNFEGHLPQCLN--HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGT 58
            LS+N  +    + L+    + LK L++ +NQ+    P        L  L L+++    +
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 59  --FSINSLANHSKLEVLLLSSGSNMLQVKTESW---HPTSQLKVLKLSDCQLHVIPSFLL 113
               +     ++ +  L LS+  + L   + +       + L +L LS   L+V+ +   
Sbjct: 211 LTEKLCLELANTSIRNLSLSN--SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 114 QQ-DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--------------IP 158
                L++  L +N +   F         L    ++  L++  +                
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFS------HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 159 NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS--------------SK 204
                +  L  L M  N +          L +L+ + +  +  S              S 
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 205 LITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP-NELCQLAKLRIMDLSNNIF 263
           L  L+L  NK         + L +L VL L  N +   +   E   L  +  + LS N +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 264 SGSIPSCLGNVS 275
                +    V 
Sbjct: 443 LQLTRNSFALVP 454

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 4e-28
 Identities = 61/312 (19%), Positives = 103/312 (33%), Gaps = 46/312 (14%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS NN           L  L+   +  N +   F  +L    ++ YL+L     + + S
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 61  INSLANH--------SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIP--- 109
           + SL             LE L +   +++  +K+  +     LK L LS+    +     
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNM-EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 110 --SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWI 161
                L    L  L+L+ NK+           D       LE LD+  N           
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIES------DAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 162 GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS------------SKLITLD 209
             +  +  + +S N            + SL+ + +   +L               L  LD
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 210 LRDNKFFGRIPYQINELSNLHVLLLRGNSLQ--------GHIPNELCQLAKLRIMDLSNN 261
           L +N         +  L  L +L L+ N+L         G     L  L+ L I++L +N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 262 IFSGSIPSCLGN 273
            F         +
Sbjct: 547 GFDEIPVEVFKD 558

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 4e-26
 Identities = 59/298 (19%), Positives = 104/298 (34%), Gaps = 34/298 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D S       +P  L   T++ VL++ +NQL     +  T ++ L  LD+   N      
Sbjct: 10  DCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF-NTISKLE 65

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
                    L+VL L   + + Q+  +++   + L  L L    +  I +    +  +L 
Sbjct: 66  PELCQKLPMLKVLNL-QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-------IPNWIGNISTLRVLLM 172
            LDLSHN L                  +L+ L +S N           I   S+L+ L +
Sbjct: 125 TLDLSHNGLSSTKL------GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 173 SKNYLEANIPVQLNHLKSLELIDIFENSLS-------------SKLITLDLRDNKFFGRI 219
           S N ++   P   + +  L  + +    L              + +  L L +++     
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 220 PYQINEL--SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
                 L  +NL +L L  N+L     +    L +L    L  N         L  + 
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  104 bits (261), Expect = 2e-25
 Identities = 55/287 (19%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFP-STLTNFTSLEYLDLSSINFQGTF 59
           +L+ N          + L HL+VLD+  N++             ++  + LS   +    
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 60  SINSLANHSKLEVLLLSSGSNMLQ---VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ- 115
             NS A    L+ L+L      L+        + P   L +L LS+  +  I   +L+  
Sbjct: 447 R-NSFALVPSLQRLMLRR--VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 116 DHLKFLDLSHNKL--VGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLR 168
           + L+ LDL HN L  +      G     L+  + L  L++  N           ++  L+
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 169 VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQI-NELS 227
           ++ +  N L        N+  SL+              +L+L+ N               
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLK--------------SLNLQKNLITSVEKKVFGPAFR 609

Query: 228 NLHVLLLRGNSLQGHIPN-----ELCQLAKLRIMDLSNNIFSGSIPS 269
           NL  L +R N       +              I +LS++    + P 
Sbjct: 610 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 39/189 (20%), Positives = 57/189 (30%), Gaps = 27/189 (14%)

Query: 92  TSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL 151
           T   +V   S  +L  +P  L    ++  L+L+HN+L                 + L  L
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPA------ANFTRYSQLTSL 54

Query: 152 DISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLI 206
           D+  N      P     +  L+VL +  N L            +L               
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT-------------- 100

Query: 207 TLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS 266
            L L  N           +  NL  L L  N L         QL  L+ + LSNN     
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 267 IPSCLGNVS 275
               L   +
Sbjct: 161 KSEELDIFA 169

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (290), Expect = 3e-29
 Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 50/313 (15%)

Query: 1   DLSSNNFEG---------HLPQCLNHLTHLKVLDIFNNQLSG-NFPSTLTNFTSLEYLDL 50
           +++ N              L    +    +++  +  N L      ++L     L  LD 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 51  SSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIP 109
                +    + +   + KL  L L    N ++ +  +    T Q++ L  S  +L  IP
Sbjct: 581 VHNKVR---HLEAFGTNVKLTDLKLDY--NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 110 S--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIG 162
           +         +  +D S+NK+ G+               +   + +S N           
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 163 NISTLRVLLMSKNYLEA-------NIPVQLNHLKSLELIDIFENSLSS-----------K 204
             S +  +++S N + +              +   L  ID+  N L+S            
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 205 LITLDLRDNKFFGRIPYQINELSNLHVLLLR------GNSLQGHIPNELCQLAKLRIMDL 258
           L  +D+  N F    P Q    S L    +R      GN +    P  +     L  + +
Sbjct: 755 LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 259 SNNIFSGSIPSCL 271
            +N     +   L
Sbjct: 814 GSNDIR-KVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 8e-27
 Identities = 52/315 (16%), Positives = 104/315 (33%), Gaps = 51/315 (16%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +        +     ++L  L  ++++N       P  L +   L+ L+++         
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 61  I--------NSLANHSKLEVLLLSSGSNMLQVKTESWHPT--SQLKVLKLSDCQLHVIPS 110
           +        +      K+++  +    N L+    S       +L +L     ++  + +
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMG--YNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590

Query: 111 FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNW--IGNI 164
           F      L  L L +N++    P     +D    +  +EGL  S N    IPN     ++
Sbjct: 591 F-GTNVKLTDLKLDYNQIE-EIP-----EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 165 STLRVLLMSKNYL-----EANIPVQLNHLKSLELIDIFENSLS----------SKLITLD 209
             +  +  S N +       +  +      +   + +  N +           S + T+ 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 210 LRDNKF-------FGRIPYQINELSNLHVLLLRGNSLQGHIPNEL--CQLAKLRIMDLSN 260
           L +N                      L  + LR N L   + ++     L  L  MD+S 
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSY 762

Query: 261 NIFSGSIPSCLGNVS 275
           N FS S P+   N S
Sbjct: 763 NCFS-SFPTQPLNSS 776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (257), Expect = 7e-25
 Identities = 46/289 (15%), Positives = 94/289 (32%), Gaps = 29/289 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D   N    HL         L  L +  NQ+             +E L  S    +   +
Sbjct: 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636

Query: 61  INSLANHSKLEVLLLS----SGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ- 115
           I +  +   +  +  S             +   +       + LS  ++   P+ L    
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 116 DHLKFLDLSHNKLVGNFP--ICGKMDDGLRSSTSLEGLDISGN----IPNWI--GNISTL 167
             +  + LS+N +  + P       D   +++  L  +D+  N    + +      +  L
Sbjct: 697 SPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755

Query: 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELS 227
             + +S N    + P Q  +   L+   I            D   N+   + P  I    
Sbjct: 756 SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ--------RDAEGNRILRQWPTGITTCP 806

Query: 228 NLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN-IFSGSIPSCLGNVS 275
           +L  L +  N ++  +  +L    +L I+D+++N   S  + S    + 
Sbjct: 807 SLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.9 bits (241), Expect = 8e-23
 Identities = 52/351 (14%), Positives = 103/351 (29%), Gaps = 81/351 (23%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSG-------------------------NF 35
            L+    +G +P  +  LT LKVL    +  +                            
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 36  PSTLTNFTSLEYLDLSSINFQGTFSINSLANHS--KLEVLLLSSGSNMLQVKTESWHPTS 93
              L     L   DL          +  +   S   L+   + + +N +   +++    +
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 94  QLKVLKLSDCQLHVIPSFLLQQD--------------------HLKFLDLSHNKLVGNFP 133
           +L+++  ++         +  +D                     L  ++L +   +   P
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 134 ICGKMDDGLRSSTSLEGLDISGN--------------IPNWIGNISTLRVLLMSKNYLEA 179
                 D L     L+ L+I+ N              + +       +++  M  N LE 
Sbjct: 509 ------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 180 -NIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQI-NELSNL 229
                 L  +  L L+D   N +          KL  L L  N+    IP         +
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQV 621

Query: 230 HVLLLRGNSLQGHIPN--ELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278
             L    N L+  IPN      +  +  +D S N       +   ++  ++
Sbjct: 622 EGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 2e-19
 Identities = 28/272 (10%), Positives = 74/272 (27%), Gaps = 46/272 (16%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +   + +       L++   +  L +      G  P  +   T L+ L   + +   +  
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           +      +                                   ++H    FL     L  
Sbjct: 365 LFGDEELTPDMSEER------------------------KHRIRMHYKKMFLDYDQRLNL 400

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVLLMSKNYL 177
            DL  + +  N  +     D   S    +  +++     I   I  ++ L+++  + +  
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237
             +                     +      +    K +       + L +L  + L   
Sbjct: 461 TYDNI-------------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 238 SLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS 269
                +P+ L  L +L+ ++++ N    +   
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 10/172 (5%)

Query: 106 HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNIS 165
                 L     +  L L+     G  P      D +   T L+ L    +     G + 
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVP------DAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINE 225
               L    +    +   ++        +D  +    S L+   +  N     I      
Sbjct: 367 GDEELTPDMSEERKH---RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 226 LSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW 277
                 +    N +   I   + +L KL+I+  +N+ F+    +     +  
Sbjct: 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (284), Expect = 2e-28
 Identities = 63/281 (22%), Positives = 96/281 (34%), Gaps = 34/281 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L S   E       ++    + L++ N +        L +   L +      N      
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN------ 339

Query: 61  INSLANHSKLEVLLLSS-GSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
             S  +   LE L LS  G +     ++S   T+ LK L LS   +  + S  L  + L+
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSK 174
            LD  H+ L               S  +L  LDIS              +S+L VL M+ 
Sbjct: 400 HLDFQHSNLKQMSEF-----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 175 NYLEANI-PVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLL 233
           N  + N  P     L++L                LDL   +     P   N LS+L VL 
Sbjct: 455 NSFQENFLPDIFTELRNLT--------------FLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNV 274
           +  N+           L  L+++D S N    S    L + 
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.2 bits (245), Expect = 3e-23
 Identities = 47/301 (15%), Positives = 87/301 (28%), Gaps = 36/301 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKV----LDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ 56
           DLSSN  +      L  L  + +    LD+  N ++   P        L  L L +    
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213

Query: 57  GTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS-----QLKVLKLSDCQLHV---- 107
                  +   + LEV  L  G    +   E +  ++      L + +     L      
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 108 IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTL 167
           I        ++    L    +                +   + L++          +   
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSY--------NFGWQHLELVNCKFGQFPTLKLK 325

Query: 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS------------SKLITLDLRDNKF 215
            +  ++    +         L SLE +D+  N LS            + L  LDL  N  
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 216 FGRIPYQINELSNLHVLLLRGNSLQGHIPNE-LCQLAKLRIMDLSNNIFSGSIPSCLGNV 274
              +      L  L  L  + ++L+          L  L  +D+S+     +       +
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 275 S 275
           S
Sbjct: 445 S 445

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.8 bits (244), Expect = 3e-23
 Identities = 63/297 (21%), Positives = 103/297 (34%), Gaps = 35/297 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L +  F       L  L  L           G    +  +  SLE+LDLS         
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 61  I-NSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVI--PSFLLQQDH 117
              S    + L+ L LS   N +   + ++    QL+ L      L  +   S  L   +
Sbjct: 365 CSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLRVLL 171
           L +LD+SH      F             +SLE L ++GN      +P+    +  L  L 
Sbjct: 423 LIYLDISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPY 221
           +S+  LE   P   N L SL+++++  N+  S           L  LD   N        
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 222 QINEL-SNLHVLLLRGNSLQGHIPNE--LCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
           ++    S+L  L L  N       ++  L  +   R + +       + PS    + 
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 3e-22
 Identities = 55/320 (17%), Positives = 101/320 (31%), Gaps = 55/320 (17%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L+ N  +       + L+ L+ L      L+      + +  +L+ L+++    Q    
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKV----LKLSDCQLHVIPSFLLQQ 115
               +N + LE L LS  SN +Q +         Q+ +    L LS   ++ I     ++
Sbjct: 142 PEYFSNLTNLEHLDLS--SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 116 DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----------IPNWIGNI 164
             L  L L +N    N          ++    LE   +                + +  +
Sbjct: 200 IRLHKLTLRNNFDSLNVM-----KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 165 STLRVLLMSKNYLEA---NIPVQLNHLKSLELIDIFENSLS--------SKLITLDLRDN 213
             L +      YL+    +I    N L ++    +   ++              L+L + 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 214 KF-------------------FGRIPYQINELSNLHVLLLRGNSLQ--GHIPNELCQLAK 252
           KF                    G   +   +L +L  L L  N L   G           
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 253 LRIMDLSNNIFSGSIPSCLG 272
           L+ +DLS N       + LG
Sbjct: 375 LKYLDLSFNGVITMSSNFLG 394

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 59/271 (21%), Positives = 93/271 (34%), Gaps = 44/271 (16%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
                NF   +P  L      K LD+  N L      +  +F  L+ LDLS    Q    
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESW-HPTSQLKVLKLSDCQLH-VIPSFLLQQDHL 118
             +  + S L  L+L+   N +Q          S L+ L   +  L  +    +     L
Sbjct: 70  -GAYQSLSHLSTLILT--GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           K L+++HN +                         S  +P +  N++ L  L +S N ++
Sbjct: 127 KELNVAHNLIQ------------------------SFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238
           +     L  L  + L+           ++LDL  N      P    E+  LH L LR N 
Sbjct: 163 SIYCTDLRVLHQMPLL----------NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF 211

Query: 239 LQGHIPNELCQ-LAKLRIMDLSNNIFSGSIP 268
              ++     Q LA L +  L    F     
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 14/109 (12%)

Query: 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN 224
            + + L +S N L             L+               LDL   +          
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQ--------------VLDLSRCEIQTIEDGAYQ 73

Query: 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
            LS+L  L+L GN +Q         L+ L+ +       +      +G+
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 15/74 (20%), Positives = 20/74 (27%)

Query: 200 SLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLS 259
           +L      LDL  N       Y       L VL L    +Q         L+ L  + L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 260 NNIFSGSIPSCLGN 273
            N            
Sbjct: 85  GNPIQSLALGAFSG 98

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (274), Expect = 3e-27
 Identities = 56/282 (19%), Positives = 101/282 (35%), Gaps = 25/282 (8%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DL++ +    LP  L  L+ LK L +  N+       + +NF SL +L +     +    
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 61  INSLANHSKLEVLLLSS-GSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
              L N   L  L LS                 S L+ L LS  +   + +   ++   L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMS 173
           + LDL+  +L              ++   L+ L++S +            +  L+ L + 
Sbjct: 403 ELLDLAFTRLKVKDA-----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLL 233
            N+       + N L++L            +L  L L          +    L  ++ + 
Sbjct: 458 GNHFPKGNIQKTNSLQTL-----------GRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
           L  N L       L  L  + + +L++N  S  +PS L  +S
Sbjct: 507 LSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  104 bits (261), Expect = 2e-25
 Identities = 54/293 (18%), Positives = 99/293 (33%), Gaps = 28/293 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           + S N          + L +L  LD+   Q+      T  +   L+ L L++       +
Sbjct: 39  EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MA 97

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
             +L+    L+ L        +  +     H    L+ L L    +  I        + L
Sbjct: 98  ETALSGPKALKHLFFI--QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSK 174
           K LD  +N +     +  +    L+ +T+L  L+++GN    I     + +  + L    
Sbjct: 156 KVLDFQNNAIHY---LSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 175 NYLEANIP-----VQLNHLKSLELID---------IFENSLSSKLITLDLRDNKFFGRIP 220
                 I        +  L      D         +FE      + +++L+ + FF    
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 221 YQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
              +  S L  L L    L   +P+ L  L+ L+ + LS N F         N
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.2 bits (245), Expect = 3e-23
 Identities = 42/296 (14%), Positives = 87/296 (29%), Gaps = 27/296 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
                         L++   L+ L + +N +S            L+ LD  +       S
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLS 169

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIP---SFLLQQDH 117
              +++  +   L L+   N +         ++  + L     Q  ++            
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLM 172
           L              P             S+E +++  +       N     S L+ L +
Sbjct: 230 LWLGTFEDMDDEDISPAV----FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 173 SKNYLEANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQ 222
           +  +L   +P  L  L +L+ + +  N               L  L ++ N     +   
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 223 -INELSNLHVLLLRGNSLQ--GHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
            +  L NL  L L  + ++       +L  L+ L+ ++LS N              
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 37/203 (18%), Positives = 70/203 (34%), Gaps = 23/203 (11%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL 151
           +  + L+ S   L  I +    +  +L FLDL+  ++           D  +S   L+ L
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE------DTFQSQHRLDTL 86

Query: 152 DISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--- 203
            ++ N         +     L+ L   +  + +   + L++ K+LE + +  N +SS   
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 204 -------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ-GHIPNELCQLAKLRI 255
                  KL  LD ++N         ++ L     L L  N      I       A  + 
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 256 MDLSNNIFSGSIPSCLGNVSFWR 278
           ++         I   L N +   
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 27/183 (14%)

Query: 96  KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISG 155
           K     +  L+ IP  L      + L+ S N L                  +L  LD++ 
Sbjct: 15  KTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQN------TTFSRLINLTFLDLTR 66

Query: 156 N-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDL 210
                   +   +   L  L+++ N L       L+  K+L+               L  
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK--------------HLFF 112

Query: 211 RDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC 270
                       ++    L  L L  N +      +     KL+++D  NN         
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

Query: 271 LGN 273
           + +
Sbjct: 173 MSS 175

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (251), Expect = 5e-24
 Identities = 49/297 (16%), Positives = 92/297 (30%), Gaps = 44/297 (14%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLT-------------------N 41
            L+  N         + L ++  + +    +                            +
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 42  FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS-NMLQVKTESWHPTSQLKVLKL 100
              L+ L L+      +F   +L     L  L LS  + +     + S   T+ L+ L L
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 101 SDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---- 156
           S     ++ +  +  + L+ LD  H+ L               S   L  LDIS      
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF-----SAFLSLEKLLYLDISYTNTKI 438

Query: 157 -IPNWIGNISTLRVLLMSKNYLEANIPVQ-LNHLKSLELIDIFENSLSS----------K 204
                   +++L  L M+ N  + N       +  +L  +D+ +  L            +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 205 LITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           L  L++  N          N+L +L  L    N ++            L   +L+NN
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 55/299 (18%), Positives = 101/299 (33%), Gaps = 33/299 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS N  +       ++ + L+ LD+   ++             L  L L+    Q  FS
Sbjct: 38  DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FS 96

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVI--PSFLLQQDHL 118
             S +  + LE L+    + +  +++        LK L ++   +H    P++     +L
Sbjct: 97  PGSFSGLTSLENLVA-VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSST-SLEGLDISGN----IPNWIGNISTLRVLLMS 173
             +DLS+N +     I       LR +      LD+S N    I +       L  L + 
Sbjct: 156 VHVDLSYNYIQT---ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212

Query: 174 KNYLEANIP----VQLNHLKSLELI---------------DIFENSLSSKLITLDLRDNK 214
            N+  +NI       L  L    LI                I E      +    L    
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 215 FFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
            F     + + L+N+  + L G S++     ++ +  K + + +            L  
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 8e-21
 Identities = 55/300 (18%), Positives = 97/300 (32%), Gaps = 41/300 (13%)

Query: 1   DLSSNNFEGHLPQ-CLNHLTHLKVLDIFNNQLSGNF------PSTLTNFTSLEYLDLS-S 52
            L  N    ++ + CL +L  L V  +   +           PS +     +   +   +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 53  INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFL 112
                +  I      + +  + L+     ++   E      + + L +  CQL   P+  
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAG--VSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 113 LQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-------IPNWIGNIS 165
           L    LK L L+ NK   +F              SL  LD+S N               +
Sbjct: 327 LP--FLKSLTLTMNKGSISFKKVA--------LPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-----------KLITLDLRDNK 214
           +LR L +S N     +      L+ L+ +D   ++L             KL+ LD+    
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 215 FFGRIPYQINELSNLHVLLLRGNSLQGHIP-NELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
                      L++L+ L + GNS + +   N       L  +DLS              
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 43/293 (14%), Positives = 88/293 (30%), Gaps = 33/293 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN-FPSTLTNFTSLEYLDLSSINFQGTF 59
           D+S N  +    Q    +  L  L +  N  S N   + L N   L    L    F+   
Sbjct: 187 DMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 60  SINSLANH-----SKLEVLLLS-SGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLL 113
           ++             + +     + +N        +H  + +  + L+   +  +     
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP- 304

Query: 114 QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVL 170
           +    + L +   +L     +             L+ L ++ N   I      + +L  L
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTL---------DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355

Query: 171 LMSKNYLEA--NIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRI 219
            +S+N L              SL  +D+  N             +L  LD + +      
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 220 PYQ-INELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCL 271
            +     L  L  L +   + +         L  L  + ++ N F  +  S +
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 8e-17
 Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 17/212 (8%)

Query: 1   DLSSNNFEGHLPQCLNHL--THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGT 58
           DLS N          + L    L+ LD+  N       +       L++LD      +  
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414

Query: 59  FSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQL--HVIPSFLLQQD 116
              ++  +  KL  L +S  +N        +   + L  LK++      + + +      
Sbjct: 415 TEFSAFLSLEKLLYLDIS-YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 117 HLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLL 171
           +L FLDLS  +L               +   L+ L++S N       +    + +L  L 
Sbjct: 474 NLTFLDLSKCQLEQISW------GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSS 203
            S N +E +  +  +  KSL   ++  NS++ 
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 57/280 (20%), Positives = 103/280 (36%), Gaps = 37/280 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
                     +P  +   +  K +D+  N L      + +NF+ L++LDLS    +    
Sbjct: 17  QCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IE 72

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
             +      L  L+L +G+ +      S+   + L+ L   + +L  + SF + Q   LK
Sbjct: 73  DKAWHGLHHLSNLIL-TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSK 174
            L+++HN +        K+     + T+L  +D+S N       N +  +     + +S 
Sbjct: 132 KLNVAHNFIHS-----CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIP-YQINELSNLHVLL 233
           +       + LN +  ++    F+     KL  L LR N     I    +  L+ LHV  
Sbjct: 187 D-------MSLNPIDFIQD-QAFQG---IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 234 LRGNSLQGHIPNE---------LCQLAKLRIMDLSNNIFS 264
           L     +     E         LC +          N FS
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN 224
           S+ + + +S N L+       ++   L+               LDL   +         +
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQ--------------WLDLSRCEIETIEDKAWH 77

Query: 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
            L +L  L+L GN +Q   P     L  L  +       +      +G 
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 4e-22
 Identities = 51/296 (17%), Positives = 99/296 (33%), Gaps = 37/296 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
               +     L    + L+  +     +     +      N  + +    +    + T  
Sbjct: 18  YFQGST---ALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKATAD 73

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           +   A       L L S    L    +     S L+ + +    L  +P  + Q   L+ 
Sbjct: 74  LLEDATQPGRVALELRS--VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET 131

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNIST--------- 166
           L L+ N L    P        + S   L  L I        +P  + +            
Sbjct: 132 LTLARNPLR-ALP------ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 167 LRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFG 217
           L+ L +    + + +P  + +L++L+ + I  + LS+         KL  LDLR      
Sbjct: 185 LQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 218 RIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
             P      + L  L+L+  S    +P ++ +L +L  +DL   +    +PS +  
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 4e-21
 Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 23/263 (8%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
            +H +  + L    +     +   L+ +      D +        S    AN +  ++  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-----RWHSAWRQANSNNPQIET 62

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
            +  +                  L+L    L   P    +  HL+ + +    L+   P 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELP- 120

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                D ++    LE L ++ N    +P  I +++ LR L +        +P  L    +
Sbjct: 121 -----DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 191 LELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL 250
                   N     L +L L        +P  I  L NL  L +R + L   +   +  L
Sbjct: 176 SGEHQGLVN-----LQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 251 AKLRIMDLSNNIFSGSIPSCLGN 273
            KL  +DL       + P   G 
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 7e-19
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 42/265 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L S       P     L+HL+ + I    L    P T+  F  LE L L+    +   +
Sbjct: 87  ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---A 141

Query: 61  I-NSLANHSKLEVLLLSSGSNMLQV--------KTESWHPTSQLKVLKLSDCQLHVIPSF 111
           +  S+A+ ++L  L + +   + ++         +        L+ L+L    +  +P+ 
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNIST 166
           +    +LK L + ++ L             +     LE LD+ G       P   G  + 
Sbjct: 202 IANLQNLKSLKIRNSPLSA-LG------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 167 LRVL-LMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINE 225
           L+ L L   + L   +P+ ++ L  LE               LDLR      R+P  I +
Sbjct: 255 LKRLILKDCSNLLT-LPLDIHRLTQLE--------------KLDLRGCVNLSRLPSLIAQ 299

Query: 226 LSNLHVLLLRGNSLQGHIPNELCQL 250
           L    ++L+  +       +     
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 30/201 (14%), Positives = 56/201 (27%), Gaps = 26/201 (12%)

Query: 82  LQVKTESWHPTSQLKVLKLSDC-QLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDD 140
           +       H +S  + L       L      L Q       D +                
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 141 GLRSSTSLEGLDISGNIPNWIGNIS--TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFE 198
             R+  +L+         + + + +      L +    L    P Q   L  L+ + I  
Sbjct: 61  ETRTGRALKAT------ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 199 NSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDL 258
             L                 +P  + + + L  L L  N L+  +P  +  L +LR + +
Sbjct: 114 AGLME---------------LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157

Query: 259 SNNIFSGSIPSCLGNVSFWRE 279
                   +P  L +     E
Sbjct: 158 RACPELTELPEPLASTDASGE 178

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.9 bits (221), Expect = 8e-21
 Identities = 56/267 (20%), Positives = 95/267 (35%), Gaps = 41/267 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            ++ ++ +  L        ++K LD+  N LS    + L  FT LE L+LSS        
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---E 72

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
              L + S L  L L+  +N +Q           ++ L  ++  +  +     Q    K 
Sbjct: 73  TLDLESLSTLRTLDLN--NNYVQ----ELLVGPSIETLHAANNNISRVSCSRGQG--KKN 124

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLRVLLMSK 174
           + L++NK+          D      + ++ LD+  N            +  TL  L +  
Sbjct: 125 IYLANNKIT-MLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLL 234
           N                 + D+    + +KL TLDL  NK    +  +    + +  + L
Sbjct: 179 N----------------FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISL 221

Query: 235 RGNSLQGHIPNELCQLAKLRIMDLSNN 261
           R N L   I   L     L   DL  N
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 48/294 (16%), Positives = 96/294 (32%), Gaps = 47/294 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS N         L   T L++L++ +N L       L + ++L  LDL++        
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY------ 91

Query: 61  INSLANHSKLEVLLLSS-------------------GSNMLQ-VKTESWHPTSQLKVLKL 100
           +  L     +E L  ++                    +N +  ++       S+++ L L
Sbjct: 92  VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 101 SDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-- 156
              ++  +         D L+ L+L +N +            G      L+ LD+S N  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFI--------YDVKGQVVFAKLKTLDLSSNKL 203

Query: 157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNK 214
             +     + + +  + +  N L   I   L   ++LE  D+  N      +      N+
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 215 FFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQ----LAKLRIMDLSNNIFS 264
               +  Q  +               GH     C+        R++ L ++   
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 3e-20
 Identities = 60/269 (22%), Positives = 92/269 (34%), Gaps = 49/269 (18%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            +  NN    LP        L+ L++  NQL+ + P        L               
Sbjct: 67  VIPDNNLT-SLP---ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSN---------P 112

Query: 61  INSL-ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
           +  L A  S L  L +    N L            L+ L +SD QL  +P+       L 
Sbjct: 113 LTHLPALPSGLCKLWIF--GNQLTSLPVLP---PGLQELSVSDNQLASLPALP---SELC 164

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKN 175
            L   +N+L  + P            + L+ L +S N    +P        L  L    N
Sbjct: 165 KLWAYNNQLT-SLP---------MLPSGLQELSVSDNQLASLPTLPSE---LYKLWAYNN 211

Query: 176 YLEANIPVQLNHLKSLELIDIFENSLS---SKLITLDLRDNKFFGRIPYQINELSNLHVL 232
            L + +P   + LK L +      SL    S+L  L +  N+    +P      S L  L
Sbjct: 212 RLTS-LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLP---MLPSGLLSL 266

Query: 233 LLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
            +  N L   +P  L  L+    ++L  N
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 59/274 (21%), Positives = 98/274 (35%), Gaps = 56/274 (20%)

Query: 11  LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSL-ANHSK 69
           +  CLN      VL++  + L+   P  L     +  L +   N      + SL A   +
Sbjct: 34  MRACLN--NGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN------LTSLPALPPE 82

Query: 70  LEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLV 129
           L  L +S   N L           +L +       L  +PS       L  L +  N+L 
Sbjct: 83  LRTLEVS--GNQLTSLPVLPPGLLELSIFSNPLTHLPALPS------GLCKLWIFGNQL- 133

Query: 130 GNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQL 185
            + P              L+ L +S N    +P        L  L    N L + +P+  
Sbjct: 134 TSLP---------VLPPGLQELSVSDNQLASLPALPSE---LCKLWAYNNQLTS-LPMLP 180

Query: 186 NHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239
           + L+ L    + +N L+S      +L  L   +N+    +P      S L  L++ GN L
Sbjct: 181 SGLQEL---SVSDNQLASLPTLPSELYKLWAYNNR-LTSLP---ALPSGLKELIVSGNRL 233

Query: 240 QGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
              +P    +L +L    +S N  + S+P     
Sbjct: 234 T-SLPVLPSELKEL---MVSGNRLT-SLPMLPSG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 23/221 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            +S N     LP   + L  L      NN+L+ + P+  +    L+ L +S         
Sbjct: 187 SVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSG---LKELIVSGNR------ 232

Query: 61  INSL-ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
           + SL    S+L+ L++S   N L          S L  L +   QL  +P  L+      
Sbjct: 233 LTSLPVLPSELKELMVSG--NRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSET 287

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA 179
            ++L  N L     +       + S+    G  I  ++        T  + L + ++L  
Sbjct: 288 TVNLEGNPLS-ERTLQ--ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344

Query: 180 NIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIP 220
               +        +    +N+ +  L    L + + F +  
Sbjct: 345 AREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDA 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 5e-20
 Identities = 54/274 (19%), Positives = 92/274 (33%), Gaps = 16/274 (5%)

Query: 1   DLSSNNFEGHL-PQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
           +L S      +  +   +L +L++LD+ ++++    P        L  L L         
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 60  -SINSLANHSKLEVLLLSSGSNMLQVKTESW--HPTSQLKVLKLSDCQLHVIPSFL---L 113
                  N   L  L LS   N ++           + LK +  S  Q+ ++       L
Sbjct: 114 LKDGYFRNLKALTRLDLSK--NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 114 QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI------GNISTL 167
           Q   L F  L+ N L     +          +  LE LD+SGN             IS  
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231

Query: 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELS 227
           +   +   +         +++K  +  + F     S +  LDL     F         L 
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQ-NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 228 NLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           +L VL L  N +          L  L++++LS N
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 64/265 (24%), Positives = 110/265 (41%), Gaps = 20/265 (7%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS         +    L  LKVL++  N+++           +L+ L+LS  N  G   
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELY 330

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
            ++     K+  + L   +++  ++ +++    +L+ L L D  L  I         +  
Sbjct: 331 SSNFYGLPKVAYIDL-QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI----PSIPD 385

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN 180
           + LS NKLV    I    +    S   LE LDI      ++  +  L++L++++N   + 
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDIL----YFLLRVPHLQILILNQNRFSSC 441

Query: 181 IPVQL-NHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239
              Q  +   SLE + + EN L     T +L  + F G        LS+L VL L  N L
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWET-ELCWDVFEG--------LSHLQVLYLNHNYL 492

Query: 240 QGHIPNELCQLAKLRIMDLSNNIFS 264
               P     L  LR + L++N  +
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.3 bits (206), Expect = 3e-18
 Identities = 57/289 (19%), Positives = 101/289 (34%), Gaps = 41/289 (14%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L+ N       +    L +L+VL++  N L   + S       + Y+DL   N      
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK-NHIAIIQ 354

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
             +     KL+ L L    N L     + H    +  + LS  +L  +P   L       
Sbjct: 355 DQTFKFLEKLQTLDLR--DNALT----TIHFIPSIPDIFLSGNKLVTLPKINLT---ANL 405

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLRVLLMSK 174
           + LS N+L     +       L     L+ L ++ N               +L  L + +
Sbjct: 406 IHLSENRLENLDILY-----FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 175 NYLEANIPVQLN-----HLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRI 219
           N L+     +L       L  L+++ +  N L+S           L  L L  N+     
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 220 PYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
              +   +NL +L +  N L    P+       L ++D+++N F     
Sbjct: 521 HNDL--PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.0 bits (200), Expect = 2e-17
 Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 31/281 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNF--TSLEYLDLSSINFQGT 58
              SN         L    H+       + +     +T      +S+ +LDLS      +
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-S 280

Query: 59  FSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DH 117
            +         L+VL L+  + + ++  E+++    L+VL LS   L  + S        
Sbjct: 281 LNSRVFETLKDLKVLNLA-YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYL 177
           + ++DL  N       I    D   +    L+ LD+  N    I  I ++  + +S    
Sbjct: 340 VAYIDLQKNH------IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS---- 389

Query: 178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFG-RIPYQINELSNLHVLLLRG 236
                   N L +L  I++  N        + L +N+     I Y +  + +L +L+L  
Sbjct: 390 -------GNKLVTLPKINLTAN-------LIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 237 NSLQGHIPNELCQ-LAKLRIMDLSNNIFSGSIPSCLGNVSF 276
           N       ++       L  + L  N+   +  + L    F
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.2 bits (198), Expect = 4e-17
 Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 26/277 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
                N    +PQ    L   + L +  N +     S+      L+ L+L S     T  
Sbjct: 10  FYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH---VIPSFLLQQDH 117
             +  N   L +L L S S +  +  +++     L  L+L  C L    +   +      
Sbjct: 66  KEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNIS-------TLRVL 170
           L  LDLS N++         +        SL+ +D S N    +           TL   
Sbjct: 125 LTRLDLSKNQIR-----SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 171 LMSKNYLEANIPVQ-LNHLKSLELIDIFENSLSSKLITLDLRD---NKFFGRIPYQINEL 226
            ++ N L + + V     +     + +    +S    T+D+     N       + +   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 227 SNLHVLLLRGNSLQGHIPNELCQLAK--LRIMDLSNN 261
            ++       ++++    N    LA+  +R +DLS+ 
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 1e-19
 Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 41/270 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            ++ ++ +  L        ++K LD+  N LS    + L  FT LE L+LSS        
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---E 72

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
              L + S L  L L+  +N +Q           ++ L  ++  +  +     Q    K 
Sbjct: 73  TLDLESLSTLRTLDLN--NNYVQ----ELLVGPSIETLHAANNNISRVSCSRGQG--KKN 124

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLRVLLMSK 174
           + L++NK+          D      + ++ LD+  N            +  TL  L +  
Sbjct: 125 IYLANNKITML------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLL 234
           N++                 D+    + +KL TLDL  NK    +  +    + +  + L
Sbjct: 179 NFIY----------------DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISL 221

Query: 235 RGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264
           R N L   I   L     L   DL  N F 
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 36/265 (13%), Positives = 82/265 (30%), Gaps = 24/265 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSG-NFPSTLTNFTSLEYLDLSSINFQGTF 59
            L++N             + ++ LD+  N++   NF     +  +LE+L+L         
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--- 182

Query: 60  SINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
            +      +KL+ L LSS  N L      +   + +  + L + +L +I   L    +L+
Sbjct: 183 DVKGQVVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVLLMSKNY 176
             DL  N        CG + D    +  ++ +                +   +       
Sbjct: 241 HFDLRGNGF-----HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236
            E       + L +L+           +   L  + ++   R+  +    +    +    
Sbjct: 296 CEDLPAPFADRLIALKR---------KEHALLSGQGSET-ERLECERENQARQREIDALK 345

Query: 237 NSLQGHIPNELCQLAKLRIMDLSNN 261
              +  I     +      ++    
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 25/182 (13%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL 151
           ++ K+ K++D  L    + L Q   ++K LDLS N L             L   T LE L
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA------ADLAPFTKLELL 63

Query: 152 DISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---- 203
           ++S N      + + ++STLR L ++ NY++      L    S+E +    N++S     
Sbjct: 64  NLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS 117

Query: 204 ---KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQG-HIPNELCQLAKLRIMDLS 259
                  + L +NK            S +  L L+ N +   +          L  ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 260 NN 261
            N
Sbjct: 178 YN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 108 IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIG 162
           I       +  K   ++ + L              +S+ +++ LD+SGN         + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALA------SLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 163 NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-----KLITLDLRDNKFFG 217
             + L +L +S N L   +   L  L +L  +D+  N +        + TL   +N    
Sbjct: 56  PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN-IS 112

Query: 218 RIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           R+    +       + L  N +      +    ++++ +DL  N
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 32/277 (11%), Positives = 71/277 (25%), Gaps = 38/277 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLSSN     +         +  + + NN+L       L    +LE+ DL    F     
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 61  INSLANHSKLEVL--------------------LLSSGSNMLQVKTESW------HPTSQ 94
            +  + + +++ +                    L   G+   +     +          +
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 95  LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS 154
             +L     +   +      Q   + +D    +          +D       +   L+  
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTV------IDQVTLRKQAKITLEQK 368

Query: 155 GNIPNWIGNISTLRVLLMSKNYLEANIPVQLNH----LKSLELIDIFENSLSSKLITLDL 210
               +   +        +     +A   ++L H       L+L+           +    
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQS 428

Query: 211 RDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 247
             N          ++ + L     R   L G     L
Sbjct: 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 5e-19
 Identities = 57/273 (20%), Positives = 106/273 (38%), Gaps = 35/273 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            + +N         L +LT+L+ L +  + +S    S L N T +  L+L          
Sbjct: 94  YIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLG--ANHNLSD 147

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           ++ L+N + L  L ++   + ++         + L  L L+  Q+  I   L     L +
Sbjct: 148 LSPLSNMTGLNYLTVTE--SKVK-DVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHY 203

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
                N++             + + T L  L I  N    +   + N+S L  L +  N 
Sbjct: 204 FTAYVNQITDI--------TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ 254

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSN 228
           +  +I   +  L  L+++++  N +S         +L +L L +N+        I  L+N
Sbjct: 255 IS-DINA-VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           L  L L  N +    P  L  L+K+   D +N 
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 7e-19
 Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 35/280 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L+ N      P  L++L  L  L I  N+++    S L N T+L  L L+  N      
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNIS---D 124

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           I+ LAN +K+  L L +  N            + L  L +++ ++  +         L  
Sbjct: 125 ISPLANLTKMYSLNLGA--NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA-NLTDLYS 181

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           L L++N++    P+           TSL       N    I   + N++ L  L +  N 
Sbjct: 182 LSLNYNQIEDISPLASL--------TSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSN 228
           +    P  L +L  L  ++I  N +S         KL  L++  N+        +N LS 
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI--SDISVLNNLSQ 288

Query: 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
           L+ L L  N L       +  L  L  + LS N  +   P
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.8 bits (203), Expect = 4e-18
 Identities = 52/285 (18%), Positives = 109/285 (38%), Gaps = 37/285 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            ++         Q + +LT+L+ L++  NQ++    S L+N   L  L + +        
Sbjct: 50  VVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT---D 102

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           I++L N + L  L L+   + +          +++  L L         S L     L +
Sbjct: 103 ISALQNLTNLRELYLN--EDNIS-DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           L ++ +K+    PI           T L  L ++ N    I   + ++++L       N 
Sbjct: 160 LTVTESKVKDVTPIAN--------LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ 210

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSN 228
           +    P  + ++  L  + I  N ++         +L  L++  N+        + +L+ 
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTK 266

Query: 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
           L +L +  N +     + L  L++L  + L+NN         +G 
Sbjct: 267 LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.0 bits (193), Expect = 9e-17
 Identities = 55/273 (20%), Positives = 108/273 (39%), Gaps = 37/273 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L   +    +      L  +  L +   +++      +   T+LEYL+L+         
Sbjct: 28  VLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQIT---D 80

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           I+ L+N  KL  L +   +N +     +    + L+ L L++  +  I   L     +  
Sbjct: 81  ISPLSNLVKLTNLYIG--TNKIT-DISALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           L+L  N  + +          L + T L  L ++ +    +   I N++ L  L ++ N 
Sbjct: 137 LNLGANHNLSDLS-------PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ 188

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSN 228
           +E   P  L  L SL     + N ++         +L +L + +NK     P  +  LS 
Sbjct: 189 IEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           L  L +  N +     N +  L KL+++++ +N
Sbjct: 245 LTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 5e-16
 Identities = 39/259 (15%), Positives = 91/259 (35%), Gaps = 35/259 (13%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
              L       +    ++     T     S+  L ++        SI  +   + LE L 
Sbjct: 18  DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA---SIQGIEYLTNLEYLN 72

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
           L+   N +           +L  L +   ++  I +      +L+ L L+ + +    P+
Sbjct: 73  LN--GNQIT-DISPLSNLVKLTNLYIGTNKITDISAL-QNLTNLRELYLNEDNISDISPL 128

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                      T +  L++  N      + + N++ L  L ++++ ++   P  + +L  
Sbjct: 129 AN--------LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 191 LELIDIFENSLS--------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGH 242
           L  + +  N +         + L       N+     P  +  ++ L+ L +  N +   
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236

Query: 243 IPNELCQLAKLRIMDLSNN 261
            P  L  L++L  +++  N
Sbjct: 237 SP--LANLSQLTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 37/254 (14%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L+ +N        L +LT +  L++  N    +  S L+N T L YL ++    +    
Sbjct: 116 YLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK---D 169

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           +  +AN + L  L L+   N ++  +     T  L        Q+  I   +     L  
Sbjct: 170 VTPIANLTDLYSLSLNY--NQIEDISPLASLT-SLHYFTAYVNQITDITP-VANMTRLNS 225

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           L + +NK+             L + + L  L+I  N    I   + +++ L++L +  N 
Sbjct: 226 LKIGNNKITD--------LSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQ 276

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINEL 226
           +  +I V LN+L  L  + +  N L +           L TL L  N      P  +  L
Sbjct: 277 IS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332

Query: 227 SNLHVLLLRGNSLQ 240
           S +         ++
Sbjct: 333 SKMDSADFANQVIK 346

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.4 bits (209), Expect = 1e-18
 Identities = 56/269 (20%), Positives = 100/269 (37%), Gaps = 32/269 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L SN  +         L++L  LDI  N++         +  +L+ L++   N     S
Sbjct: 86  GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYIS 144

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
             + +  + LE L L      L  + TE+      L VL+L    ++ I  +  ++   L
Sbjct: 145 HRAFSGLNSLEQLTLE--KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNW-IGNISTLRVLLMS 173
           K L++SH   +                 +L  L I+      +P   + ++  LR L +S
Sbjct: 203 KVLEISHWPYLDTMT------PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLL 233
            N +       L+ L  L+ I +    L+       +    F G        L+ L VL 
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAV------VEPYAFRG--------LNYLRVLN 302

Query: 234 LRGNSLQGHIPNELCQ-LAKLRIMDLSNN 261
           + GN L   +   +   +  L  + L +N
Sbjct: 303 VSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 45/277 (16%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
                 F   +P+ +   T  ++LD+  N++         +F  LE L+L+  N      
Sbjct: 17  LCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVE 72

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
             +  N   L  L L   SN L+ +    +   S L  L +S+ ++ ++  ++ Q   +L
Sbjct: 73  PGAFNNLFNLRTLGLR--SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           K L++  N L                   +               +++L  L + K  L 
Sbjct: 131 KSLEVGDNDL-----------------VYIS--------HRAFSGLNSLEQLTLEKCNLT 165

Query: 179 ANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSN 228
           +     L+HL  L ++ +   ++++          +L  L++    +   +        N
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 229 LHVLLLRGNSLQGHIPNELCQ-LAKLRIMDLSNNIFS 264
           L  L +   +L   +P    + L  LR ++LS N  S
Sbjct: 226 LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 30/204 (14%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L   N      + L+HL  L VL + +  ++     +      L+ L++S   +  T +
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
            N L   + L  L ++     L  V   +      L+ L LS   +  I   +L +   L
Sbjct: 218 PNCLYGLN-LTSLSIT--HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           + + L   +L                   +E        P     ++ LRVL +S N L 
Sbjct: 275 QEIQLVGGQL-----------------AVVE--------PYAFRGLNYLRVLNVSGNQLT 309

Query: 179 ANIPVQLNHLKSLELIDIFENSLS 202
                  + + +LE + +  N L+
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.6 bits (207), Expect = 1e-18
 Identities = 51/271 (18%), Positives = 102/271 (37%), Gaps = 26/271 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
              ++         L+    +++L++ + Q+            +++ L +   N      
Sbjct: 51  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLP 109

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
            +   N   L VL+L    N L  +    +H T +L  L +S+  L  I     Q    L
Sbjct: 110 PHVFQNVPLLTVLVLE--RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           + L LS N+L  +          L    SL   ++S N+ + +     +  L  S N + 
Sbjct: 168 QNLQLSSNRLT-HVD--------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218

Query: 179 ANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLH 230
               V+      L ++ +  N+L+          L+ +DL  N+    + +   ++  L 
Sbjct: 219 V---VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 231 VLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
            L +  N L   +      +  L+++DLS+N
Sbjct: 276 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.6 bits (202), Expect = 7e-18
 Identities = 52/273 (19%), Positives = 102/273 (37%), Gaps = 31/273 (11%)

Query: 2   LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
           +     + +       L + K++   N+ +     + L +F  +E L+L+          
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDT 86

Query: 62  NSLANHSKLEVLLLSSGSNML-QVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
            + A    ++ L +    N +  +    +     L VL L    L  +P  +      L 
Sbjct: 87  YAFAYAHTIQKLYMG--FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKN 175
            L +S+N L          DD  +++TSL+ L +S N    +   +  I +L    +S N
Sbjct: 145 TLSMSNNNLE-RIE-----DDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 196

Query: 176 YLEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSN 228
            L       L    ++E +D   NS++        +L  L L+ N         +     
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--TDTAWLLNYPG 249

Query: 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           L  + L  N L+  + +   ++ +L  + +SNN
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 54/275 (19%), Positives = 94/275 (34%), Gaps = 59/275 (21%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            +  N      P    ++  L VL +  N LS        N   L  L +S+        
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-------- 150

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
            N+L                   ++ +++  T+ L+ L+LS  +L  +   L+    L  
Sbjct: 151 -NNLER-----------------IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS--LFH 190

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
            ++S+N L             L    ++E LD S N    +         L +L +  N 
Sbjct: 191 ANVSYNLL-----------STLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNN 237

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINEL 226
           L  +    L +   L  +D+  N L            +L  L + +N+    +      +
Sbjct: 238 LT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 294

Query: 227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
             L VL L  N L  H+     Q  +L  + L +N
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 32/226 (14%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            +S+NN E          T L+ L + +N+L+ +    L+   SL + ++S         
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL------ 197

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           +++LA    +E L  S   N + V         +L +LKL    L       L    L  
Sbjct: 198 LSTLAIPIAVEELDAS--HNSINVVRG--PVNVELTILKLQHNNLTDTAWL-LNYPGLVE 252

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           +DLS+N+L                   LE L IS N    +  +   I TL+VL +S N+
Sbjct: 253 VDLSYNELE-KIM-----YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKF 215
           L  ++         LE + +  NS+ +        L  L L  N +
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 47/262 (17%), Positives = 92/262 (35%), Gaps = 27/262 (10%)

Query: 11  LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKL 70
           +   L +      + I        F        + + +   + +         L +  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-STMRKLPAALLDSFRQV 71

Query: 71  EVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLV 129
           E+L L +   + ++ T ++     ++ L +    +  +P  + Q    L  L L  N L 
Sbjct: 72  ELLNL-NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 130 GNFPICGKMDDGLRSSTSLEGLDISGNI-----PNWIGNISTLRVLLMSKNYLEANIPVQ 184
            + P          ++  L  L +S N       +     ++L+ L +S N L     V 
Sbjct: 131 -SLP-----RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VD 181

Query: 185 LNHLKSLELIDIFENSLSS-----KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239
           L+ + SL   ++  N LS+      +  LD   N     +   +     L +L L+ N+L
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNL 238

Query: 240 QGHIPNELCQLAKLRIMDLSNN 261
                  L     L  +DLS N
Sbjct: 239 TD--TAWLLNYPGLVEVDLSYN 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 52/271 (19%), Positives = 102/271 (37%), Gaps = 33/271 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L +N      P     L  L+ L +  NQL    P  +    +L+ L +   N      
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHE-NEITKVR 137

Query: 61  INSLANHSKLEVLLLSSGSNMLQ---VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDH 117
            +     +++ V+ L +  N L+   ++  ++    +L  ++++D  +  IP  L     
Sbjct: 138 KSVFNGLNQMIVVELGT--NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--S 193

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIG-----NISTLRVLLM 172
           L  L L  NK+             L+   +L  L +S N  + +      N   LR L +
Sbjct: 194 LTELHLDGNKI-TKVD-----AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL 232
           + N L   +P  L   K ++++ +  N++S+      +  N F    P    + ++   +
Sbjct: 248 NNNKLVK-VPGGLADHKYIQVVYLHNNNISA------IGSNDF--CPPGYNTKKASYSGV 298

Query: 233 LLRGNSLQGHI--PNELCQLAKLRIMDLSNN 261
            L  N +Q     P+    +     + L N 
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 16/138 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L  N         L  L +L  L +  N +S     +L N   L  L L++        
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---K 254

Query: 61  I-NSLANHSKLEVLLLSSGSNMLQ-------VKTESWHPTSQLKVLKLSDCQLHV--IPS 110
           +   LA+H  ++V+ L +  N +                 +    + L    +    I  
Sbjct: 255 VPGGLADHKYIQVVYLHN--NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 111 FLLQQ-DHLKFLDLSHNK 127
              +       + L + K
Sbjct: 313 STFRCVYVRAAVQLGNYK 330

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 7e-18
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 39/287 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +LSSN         L+ LT L+ L   N          L N T+LE LD+SS        
Sbjct: 140 ELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVS---D 191

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           I+ LA  + LE L+ ++  N +   T     T+ L  L L+  QL  I +      +L  
Sbjct: 192 ISVLAKLTNLESLIATN--NQISDITPLGILTN-LDELSLNGNQLKDIGTLA-SLTNLTD 247

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           LDL++N++    P+ G         T L  L +  N    I   +  ++ L  L +++N 
Sbjct: 248 LDLANNQISNLAPLSG--------LTKLTELKLGANQISNISP-LAGLTALTNLELNENQ 298

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSN 228
           LE   P  +++LK+L  + ++ N++S         KL  L   +NK        +  L+N
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV--SDVSSLANLTN 354

Query: 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
           ++ L    N +    P  L  L ++  + L++  ++ +  +   NVS
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 57/273 (20%), Positives = 100/273 (36%), Gaps = 36/273 (13%)

Query: 4   SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINS 63
            N      P  L +LT L+ LDI +N++S    S L   T+LE L  ++        I  
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS---DITP 216

Query: 64  LANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDL 123
           L   + L+ L L+   N L+    +    + L  L L++ Q+  +   L     L  L L
Sbjct: 217 LGILTNLDELSLNG--NQLK-DIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL 272

Query: 124 SHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEA 179
             N++    P+ G         T+L  L+++ N    I   I N+  L  L +  N +  
Sbjct: 273 GANQISNISPLAGL--------TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323

Query: 180 NIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHV 231
             P  ++ L  L+ +  + N +S          +  L    N+     P  +  L+ +  
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264
           L L   +      N    ++    +        
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 62/279 (22%), Positives = 106/279 (37%), Gaps = 37/279 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
                  +      + +L +L  ++  NNQL+    + L N T L  + +++        
Sbjct: 52  QADRLGIKS--IDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIA---D 104

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           I  LAN + L  L L   +N +       + T  L  L+LS   +  I + L     L+ 
Sbjct: 105 ITPLANLTNLTGLTLF--NNQITDIDPLKNLT-NLNRLELSSNTISDISA-LSGLTSLQQ 160

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVLLMSKNYL 177
           L   +                L + T+LE LDIS N     + +  ++ L  L+ + N +
Sbjct: 161 LSFGNQVTD---------LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 211

Query: 178 EANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNL 229
               P  L  L +L+ + +  N L           L  LDL +N+     P  ++ L+ L
Sbjct: 212 SDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 230 HVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
             L L  N +     + L  L  L  ++L+ N      P
Sbjct: 268 TELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 52/279 (18%), Positives = 101/279 (36%), Gaps = 33/279 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             ++N      P  L  LT+L  L +  NQL      TL + T+L  LDL++       +
Sbjct: 205 IATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---N 257

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           +  L+  +KL  L L +  N +          + L  L+L++ QL  I   +    +L +
Sbjct: 258 LAPLSGLTKLTELKLGA--NQIS-NISPLAGLTALTNLELNENQLEDISP-ISNLKNLTY 313

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVLLMSKNYL 177
           L L  N +    P+           T L+ L    N     + + N++ +  L    N +
Sbjct: 314 LTLYFNNISDISPVSS--------LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365

Query: 178 EANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRI-PYQINELSNL 229
               P  L +L  +  + + + + ++        +   +   N     I P  I++  + 
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSY 423

Query: 230 HVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
               +  N             ++   +      FSG++ 
Sbjct: 424 TEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 56/278 (20%), Positives = 97/278 (34%), Gaps = 39/278 (14%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
              L       +    ++     + T+   +  L    +  +   SI+ +   + L  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 74

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
            S  +N L   T   + T +L  + +++ Q+  I   L    +L  L L +N++    P+
Sbjct: 75  FS--NNQLTDITPLKNLT-KLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL 130

Query: 135 CG--------------KMDDGLRSSTSLEGLDISGNIPNW--IGNISTLRVLLMSKNYLE 178
                                L   TSL+ L     + +   + N++TL  L +S N + 
Sbjct: 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190

Query: 179 ANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLH 230
                 L  L +LE +    N +S          L  L L  N+        +  L+NL 
Sbjct: 191 --DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLT 246

Query: 231 VLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268
            L L  N +    P  L  L KL  + L  N  S   P
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.5 bits (201), Expect = 1e-17
 Identities = 51/271 (18%), Positives = 101/271 (37%), Gaps = 26/271 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
              ++         L+    +++L++ + Q+            +++ L +   N      
Sbjct: 57  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLP 115

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
            +   N   L VL+L    N L  +    +H T +L  L +S+  L  I     Q    L
Sbjct: 116 PHVFQNVPLLTVLVLE--RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           + L LS N+L             L    SL   ++S N+ + +     +  L  S N + 
Sbjct: 174 QNLQLSSNRLT---------HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224

Query: 179 ANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLH 230
               V+      L ++ +  N+L+          L+ +DL  N+    + +   ++  L 
Sbjct: 225 V---VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 231 VLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
            L +  N L   +      +  L+++DLS+N
Sbjct: 282 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 27/258 (10%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
           L +      + I        F        + + +   + +         L +  ++E+L 
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-STMRKLPAALLDSFRQVELLN 81

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFP 133
           L +   + ++ T ++     ++ L +    +  +P  + Q    L  L L  N L  + P
Sbjct: 82  L-NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 134 ICGKMDDGLRSSTSLEGLDISGNI-----PNWIGNISTLRVLLMSKNYLEANIPVQLNHL 188
                     ++  L  L +S N       +     ++L+ L +S N L     V L+ +
Sbjct: 140 -----RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLI 191

Query: 189 KSLELIDIFENSLSS-----KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 243
            SL   ++  N LS+      +  LD   N     +   +     L +L L+ N+L    
Sbjct: 192 PSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTD-- 246

Query: 244 PNELCQLAKLRIMDLSNN 261
              L     L  +DLS N
Sbjct: 247 TAWLLNYPGLVEVDLSYN 264

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D S N+    +         L +L + +N L+    + L N+  L  +DLS  N      
Sbjct: 217 DASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY-NELEKIM 270

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
            +      +LE L +S+  N L        P   LKVL LS   L  +     Q D L+ 
Sbjct: 271 YHPFVKMQRLERLYISN--NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 328

Query: 121 LDLSHNKL 128
           L L HN +
Sbjct: 329 LYLDHNSI 336

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 51/238 (21%), Positives = 93/238 (39%), Gaps = 25/238 (10%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
           T+ ++L++  NQ+     ++  +   LE L LS  N   T  I +    + L  L L   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELF-- 120

Query: 79  SNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICG 136
            N L  +   ++   S+LK L L +  +  IPS+   +   L+ LDL   K +       
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS--- 177

Query: 137 KMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLE 192
             +      ++L  L+++      IPN +  +  L  L +S N+L A  P     L  L+
Sbjct: 178 --EGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 193 LIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240
            + + ++ +             L+ ++L  N            L +L  + L  N   
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 31/189 (16%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDG-LRSSTSLEG 150
           +  ++L L + Q+ +I     +   HL+ L LS N +         ++ G      +L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-------RTIEIGAFNGLANLNT 116

Query: 151 LDISGNI-----PNWIGNISTLRVLLMSKN---YLEANIPVQLNHLKSLELIDIFENSLS 202
           L++  N            +S L+ L +  N    + +    ++  L+ L+L ++    LS
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL--KRLS 174

Query: 203 S----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK 252
                       L  L+L        IP  +  L  L  L L GN L    P     L  
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 253 LRIMDLSNN 261
           L+ + +  +
Sbjct: 233 LQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS N+     P     L HL+ L +  +Q+     +   N  SL  ++L+  N      
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 61  INSLANHSKLEVLLLSS 77
            +       LE + L  
Sbjct: 272 HDLFTPLHHLERIHLHH 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 5e-17
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 28/256 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             +       +PQ +   ++ + L++  N +      T  +   LE L L   N      
Sbjct: 60  VCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIE 115

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
           + +    + L  L L    N L  + + ++   S+L+ L L +  +  IPS+   +   L
Sbjct: 116 VGAFNGLASLNTLELF--DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSK 174
             LDL   K +         +       +L+ L++       +PN    +  L  L MS 
Sbjct: 174 MRLDLGELKKLEYIS-----EGAFEGLFNLKYLNLGMCNIKDMPNL-TPLVGLEELEMSG 227

Query: 175 NYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQIN 224
           N+     P   + L SL+ + +  + +S            L+ L+L  N           
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 225 ELSNLHVLLLRGNSLQ 240
            L  L  L L  N   
Sbjct: 288 PLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 31/189 (16%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDG-LRSSTSLEG 150
           S  + L L +  + +I +   +   HL+ L L  N +        +++ G      SL  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-------RQIEVGAFNGLASLNT 127

Query: 151 LDISGNI-----PNWIGNISTLRVLLMSKN---YLEANIPVQLNHLKSLELIDIFENSLS 202
           L++  N            +S LR L +  N    + +    ++  L  L+L ++    L 
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--KKLE 185

Query: 203 S----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK 252
                       L  L+L        +P  +  L  L  L + GN      P     L+ 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 253 LRIMDLSNN 261
           L+ + + N+
Sbjct: 244 LKKLWVMNS 252

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L   N +  +P  L  L  L+ L++  N      P +    +SL+ L + + +      
Sbjct: 202 NLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIE 258

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLS------DCQLH 106
            N+    + L  L L+   N L  +  + + P   L  L L       DC + 
Sbjct: 259 RNAFDGLASLVELNLA--HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.4 bits (196), Expect = 6e-17
 Identities = 40/270 (14%), Positives = 87/270 (32%), Gaps = 8/270 (2%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSG-NFPSTLTNFTSLEYLDLSSINFQGTF 59
           DLS N+           L+ LK L++  N        S   N T+L+ L + ++      
Sbjct: 80  DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 60  SINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHL 118
                A  + L  L +    ++   +++S      +  L L   +   +          +
Sbjct: 140 RRIDFAGLTSLNELEIK-ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           ++L+L    L         +D+       L          ++   +  LR +L       
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 179 ANIPVQLNHLKSLELIDIFENSLSSKLITL---DLRDNKFFGRIPYQINELSNLHVLLLR 235
            +  +      +    D+       + +T+    +     F  +    + L  +  + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 236 GNSLQGHIPNELCQ-LAKLRIMDLSNNIFS 264
            + +   +P    Q L  L  +DLS N+  
Sbjct: 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.7 bits (189), Expect = 4e-16
 Identities = 49/304 (16%), Positives = 96/304 (31%), Gaps = 36/304 (11%)

Query: 1   DLSSNNFEGHLP-QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
            + +      +       LT L  L+I    L      +L +   + +L L   +     
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFL 187

Query: 60  SINSLANHSKLEVLLL----------SSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIP 109
                   S +  L L          S                    +   S  +L  + 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 110 SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS--STSLEGLDISGN-----IPNWIG 162
            ++L+   ++F D + N L    P    +   L    + ++  L I        +     
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 163 NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------------KLITLD 209
            +  ++ + +  + +         HLKSLE +D+ EN +                L TL 
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 210 LRDNKF--FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSI 267
           L  N      +    +  L NL  L +  N+    +P+      K+R ++LS+      +
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VV 425

Query: 268 PSCL 271
            +C+
Sbjct: 426 KTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 53/309 (17%), Positives = 99/309 (32%), Gaps = 47/309 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D  S +F   +P  L     +K LD+  N+++      L    +L+ L L S     T  
Sbjct: 11  DGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIE 66

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESW-HPTSQLKVLKLSDCQLHVIP--SFLLQQDH 117
            ++  +   LE L LS   N L   + SW  P S LK L L       +   S      +
Sbjct: 67  GDAFYSLGSLEHLDLS--DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLM 172
           L+ L + + +                  TSL  L+I            + +I  +  L +
Sbjct: 125 LQTLRIGNVETFSEIR-----RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSS--------------------KLITLDLRD 212
             +     + +  + L S+  +++ + +L+                     +   L    
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 213 NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC--------QLAKLRIMDLSNNIFS 264
                ++   I ELS +       N L    P+E          +   +R + +      
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 265 GSIPSCLGN 273
             + +    
Sbjct: 300 YDLSTVYSL 308

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 5e-15
 Identities = 45/271 (16%), Positives = 88/271 (32%), Gaps = 16/271 (5%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L S+            L  L+ LD+ +N LS    S     +SL+YL+L    +Q    
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
            +   N + L+ L + +     +++   +   + L  L++    L    S  L+    + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA 179
            L L  ++      I           +S+  L++                 + S     A
Sbjct: 176 HLTLHLSESAFLLEIF------ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 180 NIPVQLNHLKSLELIDIFENSLS-SKLITLDLRDNKFFGRIPYQIN--------ELSNLH 230
                L      EL+ +    L  S++   D   N      P + +        E   + 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 231 VLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
            L +    L   +      L K++ + + N+
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 8e-15
 Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 29/244 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSS--INFQGT 58
            +        L    + L  +K + + N+++     S   +  SLE+LDLS   +  +  
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 59  FSINSLANHSKLEVLLLSS-GSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDH 117
            +         L+ L+LS      +Q   E       L  L +S    H +P      + 
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411

Query: 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-IPNWIGNISTLRVLLMSKNY 176
           ++FL+LS   +      C           +LE LD+S N + ++   +  L+ L +S+N 
Sbjct: 412 MRFLNLSSTGIR-VVKTCI--------PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK 462

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236
           L+                 + + SL   L+ + +  N+         + L++L  + L  
Sbjct: 463 LK----------------TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 237 NSLQ 240
           N   
Sbjct: 507 NPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 56/280 (20%), Positives = 99/280 (35%), Gaps = 33/280 (11%)

Query: 4   SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNF--------TSLEYLDLSSINF 55
           S N    L + +  L+ ++  D   N L    PS              ++  L +     
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 56  QGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVI----PSF 111
               S    +   K++ + +   S +  V          L+ L LS+  +        + 
Sbjct: 299 FYDLS-TVYSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTL 167
                 L+ L LS N L        K  + L +  +L  LDIS N    +P+       +
Sbjct: 357 KGAWPSLQTLVLSQNHLR----SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412

Query: 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPY 221
           R L +S   +     V+    ++LE++D+  N+L S      +L  L +  NK    +P 
Sbjct: 413 RFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL-KTLPD 468

Query: 222 QINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
                  L V+ +  N L+        +L  L+ + L  N
Sbjct: 469 ASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 48/319 (15%), Positives = 101/319 (31%), Gaps = 65/319 (20%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFT----------------- 43
            L  +     L    + L+ ++ L++ +  L+    S L                     
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 44  --------------SLEYLDLSSINFQGTFSIN-----SLANHSKLEVLLLS----SGSN 80
                          L  ++       G    N      ++   K+E + +         
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 81  MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMD 139
           +    +  +    ++K + + + ++ ++P    Q    L+FLDLS N +V       K  
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE---EYLKNS 354

Query: 140 DGLRSSTSLEGLDISGN-------IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLE 192
               +  SL+ L +S N           +  +  L  L +S+N     +P      + + 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413

Query: 193 LIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 245
            +++    +          L  LD+ +N     +      L  L  L +  N L+  +P+
Sbjct: 414 FLNLSSTGIRVVKTCIPQTLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPD 468

Query: 246 ELCQLAKLRIMDLSNNIFS 264
                  L +M +S N   
Sbjct: 469 AS-LFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 25/186 (13%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLD 152
               V          IPS L     +K LDLS NK+             LR+  +L+ L 
Sbjct: 5   DASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGH------GDLRACANLQVLI 56

Query: 153 ISGNIPNWI-----GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---- 203
           +  +  N I      ++ +L  L +S N+L +        L SL+ +++  N   +    
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 204 -------KLITLDLRDNKFFGRIPYQ-INELSNLHVLLLRGNSLQGHIPNELCQLAKLRI 255
                   L TL + + + F  I       L++L+ L ++  SL+ +    L  +  +  
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 256 MDLSNN 261
           + L  +
Sbjct: 177 LTLHLS 182

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 7e-17
 Identities = 59/278 (21%), Positives = 91/278 (32%), Gaps = 55/278 (19%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             + N     L +CL  +     L +    LS + P  L     +  L+++         
Sbjct: 43  GENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQITVLEITQ-------- 89

Query: 61  INSL----ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQD 116
            N+L       + LE L      N L    E     + LK L + + QL ++P       
Sbjct: 90  -NALISLPELPASLEYLDACD--NRLSTLPELP---ASLKHLDVDNNQLTMLPELP---A 140

Query: 117 HLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLM 172
            L++++  +N+L    P            TSLE L +  N    +P    +   L  L +
Sbjct: 141 LLEYINADNNQLT-MLP---------ELPTSLEVLSVRNNQLTFLPELPES---LEALDV 187

Query: 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL 232
           S N LE+ +P         E             I    R+N+    IP  I  L     +
Sbjct: 188 STNLLES-LPAVPVRNHHSE----------ETEIFFRCRENRI-THIPENILSLDPTCTI 235

Query: 233 LLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC 270
           +L  N L   I   L Q             FS S    
Sbjct: 236 ILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 7e-16
 Identities = 49/252 (19%), Positives = 83/252 (32%), Gaps = 40/252 (15%)

Query: 24  LDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ 83
            + F N +SG +    + +   E   L   N     S+      ++   L L+     L 
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN--RLNLS 72

Query: 84  VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLR 143
              ++     Q+ VL+++   L  +P        L++LD   N+L    P          
Sbjct: 73  SLPDNL--PPQITVLEITQNALISLPELPAS---LEYLDACDNRLS-TLP---------E 117

Query: 144 SSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFEN 199
              SL+ LD+  N    +P        L  +    N L   +P     L+ L    +  N
Sbjct: 118 LPASLKHLDVDNNQLTMLPELPAL---LEYINADNNQLTM-LPELPTSLEVL---SVRNN 170

Query: 200 SLSS------KLITLDLRDNKFFGRIPYQINELSNL----HVLLLRGNSLQGHIPNELCQ 249
            L+        L  LD+  N     +P       +          R N +  HIP  +  
Sbjct: 171 QLTFLPELPESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 250 LAKLRIMDLSNN 261
           L     + L +N
Sbjct: 229 LDPTCTIILEDN 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 5e-10
 Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 28/238 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +++ N     LP        L+ LD  +N+LS   P    +   L++LD+ +        
Sbjct: 86  EITQNALI-SLP---ELPASLEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT---M 134

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           +  L   + LE +   +  N L +  E     + L+VL + + QL  +P      + L+ 
Sbjct: 135 LPELP--ALLEYINADN--NQLTMLPELP---TSLEVLSVRNNQLTFLPELP---ESLEA 184

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           LD+S N L     +  +      S  +        N    IP  I ++     +++  N 
Sbjct: 185 LDVSTNLLESLPAVPVRN---HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLL 234
           L + I   L+   +           S      +         +     E     V  +
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 57/253 (22%), Positives = 90/253 (35%), Gaps = 38/253 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNF--PSTLTNFTSLEYLDLSS---INF 55
           +L SN  +       + LT L  L + +N LS       +    TSL+YLDLS    I  
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93

Query: 56  QGTFSINSLANHSKLEVLLLSSGSNMLQVKTES--WHPTSQLKVLKLSDCQLHVIPSFLL 113
              F         +LE L      + L+  +E   +     L  L +S     V  + + 
Sbjct: 94  SSNFL-----GLEQLEHLDFQH--SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 114 QQ-DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-----PNWIGNISTL 167
                L+ L ++ N    NF       D      +L  LD+S        P    ++S+L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFL-----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELS 227
           +VL MS N   +        L SL+++D   N + +       +  +            S
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT------SKKQELQHF-------PS 248

Query: 228 NLHVLLLRGNSLQ 240
           +L  L L  N   
Sbjct: 249 SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 61/281 (21%), Positives = 99/281 (35%), Gaps = 49/281 (17%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
             +S      +P  +   +    L++ +N+L           T L  L LSS        
Sbjct: 13  RCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS-------- 61

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
            N L               +     ++S   T+ LK L LS   +  + S  L  + L+ 
Sbjct: 62  -NGL---------------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKN 175
           LD  H+ L               S  +L  LDIS              +S+L VL M+ N
Sbjct: 106 LDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 176 -YLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQIN 224
            + E  +P     L++L  +D+ +  L             L  L++  N FF    +   
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 225 ELSNLHVLLLRGNSLQGHIPNELCQLAK-LRIMDLSNNIFS 264
            L++L VL    N +      EL      L  ++L+ N F+
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 23/211 (10%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
              + + +  N++S    ++     +L  L L S N        +    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDN 90

Query: 79  SNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGK 137
           + +  V   ++H   +L  L L  C L  +   L +    L++L L  N L    P    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP---- 145

Query: 138 MDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLE 192
            DD  R   +L  L + GN            + +L  LL+ +N +    P     L  L 
Sbjct: 146 -DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 193 LIDIFENSLSS----------KLITLDLRDN 213
            + +F N+LS+           L  L L DN
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 43/172 (25%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL 151
           +  + + L   ++  +P+   +   +L  L L  N L                   ++  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-----------------ARID-- 72

Query: 152 DISGNIPNWIGNISTLRVLLMSKNYLEANIPVQ-LNHLKSLELIDIFENSLSSKLITLDL 210
                       ++ L  L +S N    ++     + L  L  + +    L        L
Sbjct: 73  ------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------L 120

Query: 211 RDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQ-LAKLRIMDLSNN 261
               F G        L+ L  L L+ N+LQ  +P++  + L  L  + L  N
Sbjct: 121 GPGLFRG--------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 163

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 6e-16
 Identities = 65/277 (23%), Positives = 99/277 (35%), Gaps = 36/277 (12%)

Query: 1   DLSSNNFEGHLPQCLNH-LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
            L S   E       N    HL++++    Q             SL+ L  +S       
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGG--- 338

Query: 60  SINSLANHSKLEVLLLSSGS-NMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHL 118
           +  S  +   LE L LS    +     ++S   T+ LK L LS   +  + S  L  + L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWI-GNISTLRVLLMS 173
           + LD  H+ L               S  +L  LDIS        N I   +S+L VL M+
Sbjct: 399 EHLDFQHSNLKQMSEFS-----VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 174 KNYLEANIPVQ-LNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL 232
            N  + N        L++L  +D+ +  L        L    F          LS+L VL
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNS--------LSSLQVL 499

Query: 233 LLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS 269
            +  N L+        +L  L+ + L  N +  S P 
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 51/283 (18%), Positives = 94/283 (33%), Gaps = 29/283 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L+ N  +       + L+ L+ L      L+      + +  +L+ L+++    Q    
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 61  INSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKV----LKLSDCQLHVIPSFLLQQ 115
               +N + LE L LS  SN +Q +         Q+ +    L LS   ++ I     ++
Sbjct: 142 PEYFSNLTNLEHLDLS--SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 116 DHLKFLDLSHNKLVGNFP--ICGKMDDGLRSSTSLEGLDISGNI----PNWIGNISTLRV 169
             L  L L +N    N        +         L      GN+     + +  +  L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 170 LLMSKNYLEA---NIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGR 218
                 YL+    +I    N L ++    +   ++              L+L + KF   
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ- 318

Query: 219 IPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
             +   +L +L  L    N            L  L  +DLS N
Sbjct: 319 --FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRN 357

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 59/268 (22%), Positives = 98/268 (36%), Gaps = 42/268 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
                NF   +P  L      K LD+  N L      +  +F  L+ LDLS    Q T  
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE 68

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
             +  + S L  L+L +G+ +  +   ++   S L+ L   +  L  + +F +     LK
Sbjct: 69  DGAYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA 179
            L+++HN +                         S  +P +  N++ L  L +S N +++
Sbjct: 128 ELNVAHNLIQ------------------------SFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 180 NIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239
                L  L  + L+           ++LDL  N     I     +   LH L LR N  
Sbjct: 164 IYCTDLRVLHQMPLL----------NLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 240 QGHIPNELCQ-LAKLRIMDLSNNIFSGS 266
             ++     Q LA L +  L    F   
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 47/287 (16%), Positives = 91/287 (31%), Gaps = 33/287 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS    +         L+HL  L +  N +        +  +SL+ L     N   +  
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLE 116

Query: 61  INSLANHSKLEVLLLSSGSNMLQV--KTESWHPTSQLKVLKLSDCQLHVIPSFLLQ---- 114
              + +   L+ L ++   N++Q     E +   + L+ L LS  ++  I    L+    
Sbjct: 117 NFPIGHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 115 -QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTL 167
                  LDLS N +         +  G      L  L +  N      +   I  ++ L
Sbjct: 175 MPLLNLSLDLSLNPM-------NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINEL 226
            V       L         +L+  +     E   +  +    L    ++   I    N L
Sbjct: 228 EVH-----RLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 227 SNLHVLLLRGNSLQGHIPNE--LCQLAKLRIMDLSNNIFSGSIPSCL 271
           +N+    L   +++  + +         L +++     F       L
Sbjct: 282 TNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 54/318 (16%), Positives = 104/318 (32%), Gaps = 49/318 (15%)

Query: 1   DLSSNNF-EGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLS---SINFQ 56
           +++ N      LP+  ++LT+L+ LD+ +N++   + + L     +  L+LS   S+N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 57  GTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKL------SDCQLHVIPS 110
                 +     +L  L L +  + L V        + L+V +L      ++  L     
Sbjct: 190 NFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 111 FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNIS- 165
             L+   L  L +   +L         + D     T++    +       + ++  N   
Sbjct: 249 SALE--GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 166 -TLRVLLMSKNYLEANIPVQLN----------------HLKSLELIDIFENSLS------ 202
             L ++              L                  L SLE +D+  N LS      
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 203 ------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE-LCQLAKLRI 255
                 + L  LDL  N     +      L  L  L  + ++L+          L  L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 256 MDLSNNIFSGSIPSCLGN 273
           +D+S+     +       
Sbjct: 426 LDISHTHTRVAFNGIFNG 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 38/185 (20%), Positives = 61/185 (32%), Gaps = 28/185 (15%)

Query: 100 LSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN 159
             +   + IP  L      K LDLS N L               S   L+ LD+S     
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGS------YSFFSFPELQVLDLSRCEIQ 65

Query: 160 WI-----GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNK 214
            I      ++S L  L+++ N +++      + L SL+               L   +  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ--------------KLVAVETN 111

Query: 215 FFGRIPYQINELSNLHVLLLRGNSLQ-GHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
                 + I  L  L  L +  N +Q   +P     L  L  +DLS+N       + L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 274 VSFWR 278
           +    
Sbjct: 172 LHQMP 176

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ---- 56
           DL +N+           L HL  L + NN++S       +    L+ L +S  +      
Sbjct: 60  DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119

Query: 57  GTFS----------------INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKL 100
              S                    +    +  + +                  +L  L++
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 101 SDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW 160
           S+ +L  IP  L +   L  L L HNK+           + L   + L  L +  N    
Sbjct: 180 SEAKLTGIPKDLPE--TLNELHLDHNKIQ-AIE-----LEDLLRYSKLYRLGLGHNQIRM 231

Query: 161 IG-----NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKF 215
           I       + TLR L +  N L   +P  L  LK L+++ +  N+++       +  N F
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK------VGVNDF 284

Query: 216 FGRIPYQINELSNLHVLLLRGNSLQGHI--PNELCQLAKLRIMDLSNN 261
                    + +  + + L  N +      P     +     +   N 
Sbjct: 285 CPVGFG--VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 16/138 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L  N  +    + L   + L  L + +NQ+      +L+   +L  L L +        
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---R 255

Query: 61  I-NSLANHSKLEVLLLSSGSNMLQV-------KTESWHPTSQLKVLKLSDCQLHV--IPS 110
           +   L +   L+V+ L +  N +                 +    + L +  +    +  
Sbjct: 256 VPAGLPDLKLLQVVYLHT--NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

Query: 111 FLLQQ-DHLKFLDLSHNK 127
              +       +   + K
Sbjct: 314 ATFRCVTDRLAIQFGNYK 331

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.8 bits (171), Expect = 9e-14
 Identities = 54/277 (19%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 1   DLSSNNFEGHLPQ-CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
            +        +       L+ L +L +  NQ             +LE L L+  N  G  
Sbjct: 60  KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119

Query: 60  -SINSLANHSKLEVLLLSSGSNMLQ--VKTESWHPTSQLKVLKLSDCQLHVIPS---FLL 113
            S N     + LE+L+L    N ++       +    +  VL L+  ++  I        
Sbjct: 120 LSGNFFKPLTSLEMLVLR--DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177

Query: 114 QQDHLKFLDLSHNKL--VGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNIST 166
           Q  H   L LS   L  +  + +  +       +TS+  LD+SGN     +     +   
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 167 LRVLLMSKNYLEANIPVQLNHLKSLELID-IFENSLSSKLITLDLRDNKFFGRIPYQI-N 224
              +         N+     H    +  +  F+   +S + T DL  +K F  +   + +
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFS 296

Query: 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
             ++L  L L  N +     N    L  L  ++LS N
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 59/299 (19%), Positives = 104/299 (34%), Gaps = 40/299 (13%)

Query: 1   DLSSNNFEGHL--PQCLNHLTHLKVLDIFNNQLSGNFPSTL-TNFTSLEYLDLSSINFQG 57
            L+  N +G +        LT L++L + +N +    P++   N      LDL+    + 
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK- 167

Query: 58  TFSINSLANHSKLEVLLLSSGSNMLQVKTESWHP---------TSQLKVLKLSDCQLHVI 108
           +     L N       LL   S  LQ   E W            + +  L LS       
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 109 PSF----LLQQDHLKFLDLSHNKLVG------NFPICGKMDDGLRSSTSLEGLDISGN-- 156
            +      +    ++ L LS++  +G      NF            ++ ++  D+S +  
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

Query: 157 --IPNWI-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------- 203
             +   +  + + L  L +++N +          L  L  +++ +N L S          
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347

Query: 204 KLITLDLRDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           KL  LDL  N     +  Q    L NL  L L  N L+        +L  L+ + L  N
Sbjct: 348 KLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 44/261 (16%), Positives = 86/261 (32%), Gaps = 21/261 (8%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
            H+  +D+  N ++    ++ +    L++L +           N+    S L +L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-- 87

Query: 79  SNMLQ-VKTESWHPTSQLKVLKLSDCQLH--VIPSFLLQQ-DHLKFLDLSHNKLVGNFPI 134
            N    ++T +++  + L+VL L+ C L   V+     +    L+ L L  N +    P 
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP- 146

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                  +        LD++ N    I     ++   +    +   L +     +N    
Sbjct: 147 -ASFFLNM---RRFHVLDLTFNKVKSICE--EDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 191 LELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL 250
                      +S + TLDL  N F   +  +  +      +     S   +  N     
Sbjct: 201 GWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS---NSYNMGSSF 256

Query: 251 AKLRIMDLSNNIFSGSIPSCL 271
                 D  N  F G   S +
Sbjct: 257 GHTNFKDPDNFTFKGLEASGV 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 2e-13
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 32/238 (13%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
            +        ++    ++     T     S++ +  ++ + +   S+  +     +  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 71

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
           L+   N L    +       L  L L + ++  + S L     LK L L HN +      
Sbjct: 72  LN--GNKLT-DIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGI------ 121

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                +GL     LE L +  N    I   +  ++ L  L +  N +  +I   L  L  
Sbjct: 122 --SDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTK 176

Query: 191 LELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240
           L+ + + +N +S          L  L+L   +   +     + L   + +     SL 
Sbjct: 177 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 6e-12
 Identities = 51/289 (17%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +L   +         N L  +  +   N+ +       +    ++  L L+         
Sbjct: 27  NLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT---D 79

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           I  L N   L  L L    N ++    S     +LK L L    +  I + L+    L+ 
Sbjct: 80  IKPLTNLKNLGWLFLD--ENKIK-DLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLES 135

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           L L +NK+             L   T L+ L +  N    I   +  ++ L+ L +SKN+
Sbjct: 136 LYLGNNKI--------TDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSSK----------LITLDLRDNKFFGRIPYQINEL 226
           +  ++   L  LK+L+++++F     +K            T+   D       P  I++ 
Sbjct: 187 IS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDD 242

Query: 227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275
            +     ++ +  +            + I   +   F G +   L  V 
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTI-GKAKARFHGRVTQPLKEVY 290

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 8e-12
 Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 34/253 (13%)

Query: 21  LKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80
           +      +  +   FP     F      +L   +        +    + ++ ++ +  ++
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIAN--NS 53

Query: 81  MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDD 140
            ++   +       +  L L+  +L  I   L    +L +L L  NK+        K   
Sbjct: 54  DIK-SVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKI--------KDLS 103

Query: 141 GLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDI 196
            L+    L+ L +  N    I   + ++  L  L +  N +  +I V L+ L  L+ + +
Sbjct: 104 SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSL 160

Query: 197 FENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 248
            +N +S         KL  L L  N         +  L NL VL L          N   
Sbjct: 161 EDNQISDIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 249 QLAKLRIMDLSNN 261
            L     +  ++ 
Sbjct: 219 NLVVPNTVKNTDG 231

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 46/286 (16%), Positives = 85/286 (29%), Gaps = 39/286 (13%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
              S+N    +P    ++          ++   N P        +    L     +    
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR---- 71

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
                   +   L L++    L    E       L+ L  S   L  +P        L  
Sbjct: 72  --------QAHELELNN--LGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLV 118

Query: 121 LDLSHNKLVGNFPICGKMD---------DGLRSSTSLEGLDISGN-IPNWIGNISTLRVL 170
            + +   L    P+   +            L++S+ L+ +D+  N +        +L  +
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 178

Query: 171 LMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQIN 224
               N LE  +P +L +L  L  I    NSL         L ++   +N        ++ 
Sbjct: 179 AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL--EELPELQ 234

Query: 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC 270
            L  L  +    N L+  +P+    L  L + D           S 
Sbjct: 235 NLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSL 279

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 49/270 (18%), Positives = 80/270 (29%), Gaps = 43/270 (15%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
              +N  E  LP+ L +L  L  +   NN L    P    +  +L   D    +      
Sbjct: 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQ 277

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
                    L  L +S   N+    +E       L  L  S  ++  +         L+ 
Sbjct: 278 --------SLTFLDVSE--NIFSGLSEL---PPNLYYLNASSNEIRSLCDLP---PSLEE 321

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNY 176
           L++S+NKL+   P              LE L  S N    +P    N   L+ L +  N 
Sbjct: 322 LNVSNNKLI-ELP---------ALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNP 368

Query: 177 LEANIPVQLNHLKSLELIDIFEN--SLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLL 234
           L    P     ++ L +         L   L  L +  N      P     + +L    +
Sbjct: 369 LR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL-REFPDIPESVEDLR---M 423

Query: 235 RGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264
               +            KL      ++   
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 24/183 (13%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSS------- 145
           + L+        L  +P              + ++   N P        +  S       
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 146 TSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSL 201
                L+++      +P    +   L  L+ S N L   +P     LKSL + +    +L
Sbjct: 71  RQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 202 SS---KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDL 258
           S     L  L + +N+   ++P ++   S L ++ +  NSL+  +P+    L  +     
Sbjct: 127 SDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AA 180

Query: 259 SNN 261
            NN
Sbjct: 181 GNN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 144 SSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFEN 199
           S+T L+      +    +P    N+ +      + +  E N P      + + +  + + 
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 200 SLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLS 259
            L  +   L+L +      +P       +L  L+   NSL   +P     L  L + + +
Sbjct: 69  -LDRQAHELELNNLG-LSSLP---ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 260 NNIFSGSIPS 269
               S   P 
Sbjct: 123 LKALSDLPPL 132

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 37/270 (13%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
             +K LD+ NN+++    S L    +L+ L L+S N   T   +S ++   LE L LS  
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLS-- 108

Query: 79  SNMLQVKTESW-HPTSQLKVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPIC 135
            N L   + SW  P S L  L L       +   S       L+ L + +          
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-- 166

Query: 136 GKMDDGLRSSTSLEGLDISGNI-----PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                     T LE L+I  +      P  + +I  +  L++        + + ++   S
Sbjct: 167 ---RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 191 LELIDIFENSLSS------------------KLITLDLRDNKFFGRIPYQINELSNLHVL 232
           +E +++ +  L +                      + + D   F ++   +N++S L  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 233 LLRGNSLQGHIPNELCQ-LAKLRIMDLSNN 261
               N L+  +P+ +   L  L+ + L  N
Sbjct: 283 EFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 42/251 (16%), Positives = 91/251 (36%), Gaps = 29/251 (11%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L+SN          + L  L+ LD+  N LS    S     +SL +L+L    ++    
Sbjct: 82  VLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
            +  ++ +KL++L + +     +++ + +   + L+ L++    L       L+   ++ 
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA 179
            L L   + +    +     D     +S+E L++     +               + L  
Sbjct: 202 HLILHMKQHIL---LLEIFVDVT---SSVECLELRDTDLDTF-----------HFSELST 244

Query: 180 NIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQI-NELSNL 229
                L    +   + I + SL            L+ L+   N+    +P  I + L++L
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSL 303

Query: 230 HVLLLRGNSLQ 240
             + L  N   
Sbjct: 304 QKIWLHTNPWD 314

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 9e-11
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
            +   L     +L        + F  LE +++S  +       +  +N  KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 79  SNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGK 137
           +N+L +  E++     L+ L +S+  +  +P            LD+  N  +        
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RN 147

Query: 138 MDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQ-LNHLKSLE 192
              GL  S     L ++ N    I N   N + L  L +S N     +P    +      
Sbjct: 148 SFVGL--SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 193 LIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238
           ++DI    + S          KL      + K        + +L  L    L   S
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYPS 257

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 48/249 (19%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ----GTFSINSLANHSKLEVLL 74
              K LD+  N L      +  +F  L+ LDLS    Q    G +      + S L  L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-----SLSHLSTLI 82

Query: 75  LSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNF 132
           L+   N +Q +   ++   S L+ L   +  L  + +F +     LK L+++HN +    
Sbjct: 83  LT--GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI---- 136

Query: 133 PICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLE 192
                         S +  +   N+ N       L  L +S N +++   +    L+ L 
Sbjct: 137 -------------QSFKLPEYFSNLTN-------LEHLDLSSNKIQS---IYCTDLRVLH 173

Query: 193 LIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK 252
                   +    ++LDL  N     I     +   L  L L  N L+        +L  
Sbjct: 174 -------QMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225

Query: 253 LRIMDLSNN 261
           L+ + L  N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLS    +         L+HL  L +  N +        +  +SL+ L     N   +  
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLE 116

Query: 61  INSLANHSKLEVLLLSSGSNMLQV--KTESWHPTSQLKVLKLSDCQLHVIPSFLLQ---- 114
              + +   L+ L ++   N++Q     E +   + L+ L LS  ++  I    L+    
Sbjct: 117 NFPIGHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 115 -QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156
                  LDLS N +         +  G      L+ L +  N
Sbjct: 175 MPLLNLSLDLSLNPM-------NFIQPGAFKEIRLKELALDTN 210

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 25/226 (11%)

Query: 18  LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSS 77
               + L +    L        +N  ++  + +S          +S  N SK+  + + +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 78  GSNMLQVKTESWHPTSQLKVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPIC 135
             N+  +  ++      LK L + +  L + P  + +   D    L+++ N  + + P  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-- 147

Query: 136 GKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSL 191
                GL +      L +  N    +  +  N + L  + ++KN           +L  +
Sbjct: 148 VNAFQGLCN--ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN----------KYLTVI 195

Query: 192 ELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237
           +  D F   + S    LD+        +P +   L +L  L+ R  
Sbjct: 196 DK-DAFGG-VYSGPSLLDVSQTS-VTALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 30/208 (14%), Positives = 74/208 (35%), Gaps = 26/208 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDI-FNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
            L   +         ++L ++  + +  +  L      +  N + + ++++ +       
Sbjct: 37  KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96

Query: 60  SINSLANHSKLEVLLLSSGSNMLQV--KTESWHPTSQLKVLKLSD-CQLHVIP--SFLLQ 114
             ++L     L+ L +   +  L++       + T    +L+++D   +  IP  +F   
Sbjct: 97  DPDALKELPLLKFLGIF--NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 115 QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNI---------S 165
            +    L L +N           +     + T L+ + ++ N   ++  I         S
Sbjct: 155 CNETLTLKLYNNGF-------TSVQGYAFNGTKLDAVYLNKN--KYLTVIDKDAFGGVYS 205

Query: 166 TLRVLLMSKNYLEANIPVQLNHLKSLEL 193
              +L +S+  + A     L HLK L  
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIA 233

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 49/243 (20%), Positives = 84/243 (34%), Gaps = 45/243 (18%)

Query: 18  LTHLKVLDIFNNQLSGNFPSTLTNFT--SLEYLDLSSINFQGTFSINSLANHSKLEVLLL 75
           ++ L+ L + N +++G  P  L   T   L  L+L ++++    +       ++L+  L 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL-----AELQQWLK 148

Query: 76  SSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPI 134
                              LKVL ++           ++    L  LDLS N  +G   +
Sbjct: 149 PG-----------------LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 135 CGKMDDGLRSSTSLEGLDISGN--------IPNWIGNISTLRVLLMSKNYLEANIPVQ-- 184
              +        +L+ L +                     L+ L +S N L         
Sbjct: 192 ISALCPL--KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 185 --LNHLKSLEL----IDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238
              + L SL L    +      L +KL  LDL  N+   R P   +EL  +  L L+GN 
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNR-LDRNP-SPDELPQVGNLSLKGNP 307

Query: 239 LQG 241
              
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 12/137 (8%)

Query: 1   DLSSNNFEGHLP----QCLNHLTHLKVLDIFNNQ---LSGNFPSTLTNFTSLEYLDLSSI 53
           DLS N   G        C      L+VL + N      SG   +       L+ LDLS  
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 54  NFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLL 113
           + +      S    S+L  L LS     L+   +     ++L VL LS  +L   PS   
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLS--FTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDE 294

Query: 114 QQDHLKFLDLSHNKLVG 130
               +  L L  N  + 
Sbjct: 295 LP-QVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 24/242 (9%)

Query: 41  NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKL 100
           NF+  +    S+ N  G   +        LE LL    +     +      +  LK L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 101 SDCQLHVIPSF----LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156
              ++     F    +L    L+ L L + ++ G  P          +   L  L++   
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP----PLLEATGPDLNILNLRNV 131

Query: 157 ----IPNWIGNIST-----LRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLIT 207
                  W+  +       L+VL +++ +       Q+    +L  +D+ +N    +   
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-- 189

Query: 208 LDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSI 267
                       P +   L  L +      +  G          +L+ +DLS+N    + 
Sbjct: 190 -----GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 268 PS 269
            +
Sbjct: 245 GA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 40/189 (21%), Positives = 56/189 (29%), Gaps = 22/189 (11%)

Query: 1   DLSSNNFEGHLPQCLNHL-THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
           ++S    +  L +    L   LKVL I            +  F +L  LDLS     G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 60  SINS---LANHSKLEVLLLS--SGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQ 114
            + S         L+VL L          V +       QL+ L LS   L         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 115 Q--DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLR 168
                L  L+LS   L                   L  LD+S N     P+    +  + 
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKG---------LPAKLSVLDLSYNRLDRNPS-PDELPQVG 299

Query: 169 VLLMSKNYL 177
            L +  N  
Sbjct: 300 NLSLKGNPF 308

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 32/237 (13%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
            +        ++    ++     T     S++ +  ++ + +   S+  +     +  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
           L+   N L    +       L  L L + ++  + S L     LK L L HN +      
Sbjct: 75  LN--GNKLT-DIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI------ 124

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                +GL     LE L +  N    I   +  ++ L  L +  N +   +P  L  L  
Sbjct: 125 --SDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTK 179

Query: 191 LELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239
           L+ + + +N +S          L  L+L   +   +     + L   + +     SL
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 20/194 (10%)

Query: 13  QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEV 72
           Q + +L ++  L +  N+L+   P  L N  +L +L L     +    ++SL +  KL+ 
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK---DLSSLKDLKKLKS 116

Query: 73  LLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNF 132
           L L    N +           QL+ L L + ++  I + L +   L  L L  N++    
Sbjct: 117 LSLE--HNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI---- 168

Query: 133 PICGKMDDGLRSSTSLEGLDISGN-IPNW--IGNISTLRVLLMSKNYLEANIPVQLNHLK 189
                    L   T L+ L +S N I +   +  +  L VL +             ++L 
Sbjct: 169 ----SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 190 SLELIDIFENSLSS 203
               +   + SL +
Sbjct: 225 VPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 32/237 (13%)

Query: 37  STLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLK 96
            +   F      +L   +        +    + ++ ++ +  ++ ++   +       + 
Sbjct: 18  FSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIAN--NSDIK-SVQGIQYLPNVT 71

Query: 97  VLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156
            L L+  +L  I   L    +L +L L  NK+        K    L+    L+ L +  N
Sbjct: 72  KLFLNGNKLTDI-KPLANLKNLGWLFLDENKV--------KDLSSLKDLKKLKSLSLEHN 122

Query: 157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------K 204
               I   + ++  L  L +  N +  +I V L+ L  L+ + + +N +S         K
Sbjct: 123 GISDING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 205 LITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           L  L L  N         +  L NL VL L          N    L     +  ++ 
Sbjct: 180 LQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 56/259 (21%)

Query: 14  CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVL 73
               L +   +    + ++     T  +   +  L            + ++     L   
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG------VTTIEGVQYL--- 62

Query: 74  LLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFP 133
                              + L  L+L D Q+  + + L     +  L+LS N L     
Sbjct: 63  -------------------NNLIGLELKDNQITDL-APLKNLTKITELELSGNPL----- 97

Query: 134 ICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
              K    +    S++ LD++         +  +S L+VL +  N +  NI   L  L +
Sbjct: 98  ---KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTN 152

Query: 191 LELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGH 242
           L+ + I    +S         KL TL   DNK     P  +  L NL  + L+ N +   
Sbjct: 153 LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210

Query: 243 IPNELCQLAKLRIMDLSNN 261
            P  L   + L I+ L+N 
Sbjct: 211 SP--LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 32/237 (13%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
              L  +  L  F   ++      +    +L  L+L          +  L N +K+  L 
Sbjct: 37  QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELE 91

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
           LS   N L+  +        +K L L+  Q+  + + L    +L+ L L  N++      
Sbjct: 92  LS--GNPLKNVSAIAGLQ-SIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQI------ 141

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                  L   T+L+ L I       +   + N+S L  L    N +    P  L  L +
Sbjct: 142 --TNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPN 196

Query: 191 LELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239
           L  + +  N +S          L  + L +     +  +  N L   +V+     + 
Sbjct: 197 LIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 13/162 (8%)

Query: 1   DLSSNNFEGHLPQC-LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTF 59
           DLS NN      +     LT+L  L + +N L+           +L YLDLSS N   T 
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTL 103

Query: 60  SINSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ--- 115
                ++   LEVLLL   +N +  V   ++   +QL+ L LS  Q+   P  L++    
Sbjct: 104 DEFLFSDLQALEVLLLY--NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161

Query: 116 -DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156
              L  LDLS NKL     +       L  +    GL +  N
Sbjct: 162 LPKLMLLDLSSNKLKK---LPLTDLQKL-PAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 26/169 (15%)

Query: 42  FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKL 100
            +    LDLS  N     +  +    + L  LLLS   N L  + +E++ P   L+ L L
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS--HNHLNFISSEAFVPVPNLRYLDL 95

Query: 101 SDCQLHVIPSFLLQQ-DHLKFLDLSHNKLV----GNFPICGKMDDGLRSSTSLEGLDISG 155
           S   LH +  FL      L+ L L +N +V      F       + +     L+ L +S 
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-------EDM---AQLQKLYLSQ 145

Query: 156 N----IPNWI----GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDI 196
           N     P  +      +  L +L +S N L+      L  L +     +
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL 151
           + L  L LS   L+ I S       +L++LDLS N L          +       +LE L
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLD-----EFLFSDLQALEVL 117

Query: 152 DISGN----IPNWI-GNISTLRVLLMSKN---YLEANIPVQLNHLKSLELIDIFENSLSS 203
            +  N    +      +++ L+ L +S+N        +    N L  L L+D+  N L  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DLSSN+         + L  L+VL ++NN +     +   +   L+ L LS  N    F 
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFP 152

Query: 61  INSLANHSKLEVL-LLSSGSNMLQ-VKTESWHPTSQLKVLKLS--------DCQLHVIPS 110
           +  + + +KL  L LL   SN L+ +               L         DC+L+ + S
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFS 212

Query: 111 FLLQQDHLKFLDL 123
               +     +D 
Sbjct: 213 HWQYRQLSSVMDF 225

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 45/268 (16%), Positives = 101/268 (37%), Gaps = 9/268 (3%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQL-SGNFPSTLTNFTSLEYLDLSSINFQGTF 59
           DLS N     +    +   +LK LD+  N   +        N + L++L LS+ + +   
Sbjct: 75  DLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KS 130

Query: 60  SINSLANHSKLEVLLLSSGSNMLQVKTES--WHPTSQLKVLKLSDCQLHVIPSF-LLQQD 116
           S+  +A+ +  +VLL+   +   +   E      T  L ++  ++ + H I    +    
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 117 HLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNY 176
           +L+  ++              +   L+++  L  L ++     W   I  L+++  +  +
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 177 LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236
             +   V+L         D    SL + L    +  + F     Y     SN+++     
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKA-LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 237 NSLQGHIPNELCQLAKLRIMDLSNNIFS 264
           +  +        +++    +D SNN+ +
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLT 337

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 45/264 (17%), Positives = 83/264 (31%), Gaps = 48/264 (18%)

Query: 2   LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
           L               L  L +  + ++            F+++   + +    +    +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHM 317

Query: 62  NSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDH---L 118
              +  S    L  S+ + +     E+    ++L+ L L   QL  +            L
Sbjct: 318 LCPSKISPFLHLDFSN-NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           + LD+S N +  +             + SL  L++S NI                     
Sbjct: 377 QQLDISQNSVSYDEK-----KGDCSWTKSLLSLNMSSNI--------------------- 410

Query: 179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238
                         L D     L  ++  LDL  NK    IP Q+ +L  L  L +  N 
Sbjct: 411 --------------LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455

Query: 239 LQGHIPNELCQ-LAKLRIMDLSNN 261
           L+  +P+ +   L  L+ + L  N
Sbjct: 456 LK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQG-TF 59
           + + +        C + ++    LD  NN L+        + T LE L L     +  + 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 60  SINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLK 119
                     L+ L +S  S     K      T  L  L +S   L       L    +K
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-RIK 424

Query: 120 FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156
            LDL  NK+         +   +    +L+ L+++ N
Sbjct: 425 VLDLHSNKIK-------SIPKQVVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 53/329 (16%), Positives = 107/329 (32%), Gaps = 63/329 (19%)

Query: 1   DLSSNNFEGHLPQC--LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGT 58
           DLS N F+  LP C    +++ LK L +    L  +    + +    + L +    +   
Sbjct: 96  DLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154

Query: 59  FSINSLAN-------------------------------HSKLEVLLLSSGSNMLQVKTE 87
                L +                                S ++ +L  +  +       
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

Query: 88  SWHPTSQLKVLKLSDCQLHVIPSF----LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLR 143
                 +L  L L++ +           L+    + +  +S+ KL G         D   
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF----RDFDY 270

Query: 144 SSTSLEGLDISGNIPNWIGNIST--------LRVLLMSKNYLEANIPVQLNHLKSLELID 195
           S TSL+ L I   + +  G   +        + +   + +       +  + +     +D
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 196 IFENSLSS----------KLITLDLRDNKF--FGRIPYQINELSNLHVLLLRGNSLQGHI 243
              N L+           +L TL L+ N+     +I     ++ +L  L +  NS+    
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 244 PNELC-QLAKLRIMDLSNNIFSGSIPSCL 271
               C     L  +++S+NI + +I  CL
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 56/281 (19%), Positives = 97/281 (34%), Gaps = 19/281 (6%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D S N    H+P+ L       +L+I  N +S  + S + + + L  L +S    Q    
Sbjct: 6   DRSKNGLI-HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLD 61

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIP--SFLLQQDHL 118
           I+    + +LE L LS   N  ++   S HPT  LK L LS      +P          L
Sbjct: 62  ISVFKFNQELEYLDLS--HN--KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
           KFL LS   L  +          +      + L + G       +   L+       ++ 
Sbjct: 118 KFLGLSTTHLEKSSV------LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238
                + + +  + +  +    LS+    L+     +F  I  ++     L  L L    
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 239 LQGHIPNELCQLAK---LRIMDLSNNIFSGSIPSCLGNVSF 276
              +    + QL     +    +SN    G +     + S 
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 61/319 (19%), Positives = 101/319 (31%), Gaps = 59/319 (18%)

Query: 1   DLSSNNFE----GHLPQCLNHLTHLKVLDIFNNQLSGN-----FPSTLTNFTSLEYLDLS 51
            L +        G L   L  L  L+ L + +N L            L     LE L L 
Sbjct: 91  SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150

Query: 52  SINF--QGTFSINS-LANHSKLEVLLLSS---GSNMLQVKTES-WHPTSQLKVLKLSDCQ 104
             +        + S L      + L +S+       ++V  +       QL+ LKL  C 
Sbjct: 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210

Query: 105 L-----HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--- 156
           +       +   +  +  L+ L L  NKL G+  +       L  S+ L  L I      
Sbjct: 211 VTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 157 ------IPNWIGNISTLRVLLMSKNYLEAN-----IPVQLNHLKSLELIDIFENSLSSK- 204
                 +   +    +L+ L ++ N L            L     LE + +   S ++  
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 205 -------------LITLDLRDNKFFGRIPYQI-----NELSNLHVLLLRGNSLQ----GH 242
                        L+ L + +N+       ++        S L VL L    +       
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389

Query: 243 IPNELCQLAKLRIMDLSNN 261
           +   L     LR +DLSNN
Sbjct: 390 LAATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 60/309 (19%), Positives = 105/309 (33%), Gaps = 61/309 (19%)

Query: 10  HLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-----TNFTSLEYLDLSSINF--QGTFSIN 62
            +   L     L  L++ +N+L       +     T    ++ L L +      G   ++
Sbjct: 47  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106

Query: 63  S-LANHSKLEVLLLS----SGSNMLQVKTESWHPTSQLKVLKLSDCQL-----HVIPSFL 112
           S L     L+ L LS      + +  +      P  +L+ L+L  C L       + S L
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 113 LQQDHLKFLDLSHNKL--VGNFPICGKMDDGLRSST-SLEGLDISGN---------IPNW 160
             +   K L +S+N +   G   +C     GL+ S   LE L +            +   
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLC----QGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 161 IGNISTLRVLLMSKNYL-----EANIPVQLNHLKSLELIDIFENSLSSK----------- 204
           + + ++LR L +  N L         P  L+    L  + I+E  +++K           
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 205 ---LITLDLRDNKFFGR-----IPYQINELSNLHVLLLRGNSLQG----HIPNELCQLAK 252
              L  L L  N+             +     L  L ++  S       H  + L Q   
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 253 LRIMDLSNN 261
           L  + +SNN
Sbjct: 343 LLELQISNN 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 73/310 (23%)

Query: 1   DLSSNNF-EGHLPQCLNHLTHLKVLDIFNNQLS----GNFPSTLTNFTSLEYLDLSSINF 55
           D+      +    + L  L   +V+ + +  L+     +  S L    +L  L+L S N 
Sbjct: 9   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-NE 67

Query: 56  QGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQL-----HVIPS 110
            G   ++ +    +                     P+ +++ L L +C L      V+ S
Sbjct: 68  LGDVGVHCVLQGLQ--------------------TPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 111 FLLQQDHLKFLDLSHNKL--VGNFPICGKMDDGLRSSTSLEGLDISGN---------IPN 159
            L     L+ L LS N L   G   +C  +   L     LE L +            + +
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 160 WIGNISTLRVLLMSKNYLE----ANIPVQLNHLK-SLELIDIFENSLSSK---------- 204
            +      + L +S N +       +   L      LE + +    ++S           
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 205 ----LITLDLRDNKFFGR-----IPYQINELSNLHVLLLRGNSLQ----GHIPNELCQLA 251
               L  L L  NK          P  ++  S L  L +    +     G +   L    
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 252 KLRIMDLSNN 261
            L+ + L+ N
Sbjct: 285 SLKELSLAGN 294

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 60/269 (22%)

Query: 1   DLSSNNFE----GHLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-----TNFTSLEYLDLS 51
            L   +        L   L      K L + NN ++      L      +   LE L L 
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 52  S--INFQGTFSI-NSLANHSKLEVLLLS------SGSNMLQVKTESWHPTSQLKVLKLSD 102
           S  +       +   +A+ + L  L L        G   L       HP+S+L+ L + +
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL--HPSSRLRTLWIWE 265

Query: 103 CQLHV-----IPSFLLQQDHLKFLDLSHNKL--VGNFPICGKMDDGLRS-STSLEGLDIS 154
           C +       +   L  ++ LK L L+ N+L   G   +C    + L      LE L + 
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC----ETLLEPGCQLESLWVK 321

Query: 155 GN---------IPNWIGNISTLRVLLMSKNYLEANIPVQL-----NHLKSLELIDIFENS 200
                        + +     L  L +S N LE     +L          L ++ + +  
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 201 LSSK--------------LITLDLRDNKF 215
           +S                L  LDL +N  
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCL 410

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 47/266 (17%), Positives = 84/266 (31%), Gaps = 13/266 (4%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            LS N               L+ LD+ +N+L  N         SL +LDLS  +F     
Sbjct: 82  RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPV 138

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
                N +KL  L LS  +   +           L  + L     H+             
Sbjct: 139 CKEFGNLTKLTFLGLS--AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN 180
             L H     N     +++  + +   L+  +I  N  N    ++ L  L   +     N
Sbjct: 197 TVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT--RGPTLLN 253

Query: 181 IPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIP-----YQINELSNLHVLLLR 235
           + +Q         + +F+      +  L++ +     RI      Y    L +L +  ++
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 236 GNSLQGHIPNELCQLAKLRIMDLSNN 261
                          A++ I  LS +
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSIS 339

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 20/208 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            + +  F        +    + +  +  +           + +S  +L+ +  N      
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ-NVFTDSV 369

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ----- 115
               +   +L+ L+L    N L+   +    T  +  L+  D  L+ + S    +     
Sbjct: 370 FQGCSTLKRLQTLILQ--RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 116 DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLL 171
           + +  L+LS N L G+   C            ++ LD+  N    IP  + ++  L+ L 
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--------PPKVKVLDLHNNRIMSIPKDVTHLQALQELN 479

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFEN 199
           ++ N L++      + L SL+ I + +N
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 20/272 (7%)

Query: 10  HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNF---TSLEYLDLSSINFQG--TFSINSL 64
                L     L  + + + + +      L  F     +EYL++ ++           + 
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 65  ANHSKLEVLLLSSGSNMLQVKTESWHPT-SQLKVLKLSDCQLHVIPS-FLLQQDHLKFLD 122
           +  +   +++    + +     E+ +   +++ +  LS      I            FL+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 123 LSHNKLV----GNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178
            + N              ++   +     L+       +   + ++ TL V L S N   
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419

Query: 179 ANIPVQLN------HLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL 232
            +            +L S  L       L  K+  LDL +N+    IP  +  L  L  L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQEL 478

Query: 233 LLRGNSLQGHIPNELCQ-LAKLRIMDLSNNIF 263
            +  N L+  +P+ +   L  L+ + L +N +
Sbjct: 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 50/272 (18%), Positives = 89/272 (32%), Gaps = 31/272 (11%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
              K L +  N +S      ++  + L  L LS    + +   +    +  LE L +S  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS-- 108

Query: 79  SNMLQVKTESWHPTSQLKVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICG 136
            N  +++  S  P + L+ L LS     V+P          L FL LS  K      +  
Sbjct: 109 HN--RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 137 KMDDGLRSSTSLEGLDISGNIPN--WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELI 194
                      L    I G       I N + L ++    +     + + +N L  L+L 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 195 DIFENSLS--------------SKLITLDLRDNKFFGRIP---YQINELSNLHVLLLRGN 237
           +I  N  +                L+ + L+  +   +     +Q      +  L +   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 238 SLQGHIPNEL-----CQLAKLRIMDLSNNIFS 264
           ++   I  E        L  L I  + N +F 
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFL 318

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 49/324 (15%), Positives = 104/324 (32%), Gaps = 55/324 (16%)

Query: 1   DLSSNNFEGHLPQC--LNHLTHLKVLDIFNNQLSGNFPSTLTN------FTSLEYLDLSS 52
           DLS N+F+  LP C    +LT L  L +   +        + +         L    +  
Sbjct: 127 DLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 53  INFQGTFSINSLANHSKLEVLLLSS---------------------GSNMLQVKTESWHP 91
              +     N+   H       L S                       N  ++ T     
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 92  TSQLKVLKLSDCQLHVIPSFL------LQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSS 145
           T    +L ++   +                  +++L++ +  +        +      + 
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER-IDREEFTYSETAL 304

Query: 146 TSLEGLDISGN----IPNWIGNI-STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS 200
            SL    +           + ++ + + + ++S +       V      S   ++  +N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 201 LSS----------KLITLDLRDNKF--FGRIPYQINELSNLHVLLLRGNSLQGHIPNELC 248
            +           +L TL L+ N    F ++      +S+L  L +  NSL  H  +  C
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 249 QL-AKLRIMDLSNNIFSGSIPSCL 271
                + +++LS+N+ +GS+  CL
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCL 448

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
           ++ L++L+ L I    ++ +    L+  TSL  LD+S  +      +  +    K+  + 
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSID 142

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKL 128
           LS   N             +LK L +    +H     +     L  L      +
Sbjct: 143 LS--YNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            +   +        L+ LT L +LDI ++    +  + +     +  +DLS  N   T  
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY-NGAIT-D 151

Query: 61  INSLANHSKLEVLLLSS 77
           I  L    +L+ L +  
Sbjct: 152 IMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 26/188 (13%), Positives = 67/188 (35%), Gaps = 35/188 (18%)

Query: 17  HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLS 76
            +  L  + + N  ++    + +    +++ L +++I+     + N ++  S LE L + 
Sbjct: 42  QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRI- 95

Query: 77  SGSNMLQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPIC 135
            G ++   K  +    + L +L +S       I + +     +  +DLS+N  + +    
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--- 152

Query: 136 GKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELID 195
                 L++   L+ L+I  +       +   R                +     L  + 
Sbjct: 153 ----MPLKTLPELKSLNIQFD------GVHDYRG---------------IEDFPKLNQLY 187

Query: 196 IFENSLSS 203
            F  ++  
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 28/150 (18%)

Query: 116 DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLL 171
           + L ++ L++  +            G+  + +++ L I+          I  +S L  L 
Sbjct: 44  NSLTYITLANINV--------TDLTGIEYAHNIKDLTINNIHATNYNP-ISGLSNLERLR 94

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHV 231
           +    + ++    L+ L SL L+DI  ++    ++T              +IN L  ++ 
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT--------------KINTLPKVNS 140

Query: 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           + L  N     I   L  L +L+ +++  +
Sbjct: 141 IDLSYNGAITDIMP-LKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 49/190 (25%)

Query: 38  TLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV 97
           T     SL Y+ L++IN      +  L                              +K 
Sbjct: 39  TEAQMNSLTYITLANIN------VTDLTGIEYA----------------------HNIKD 70

Query: 98  LKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN- 156
           L +++       + +    +L+ L +    +  +          L   TSL  LDIS + 
Sbjct: 71  LTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKI------PNLSGLTSLTLLDISHSA 123

Query: 157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------K 204
               I   I  +  +  + +S N    +I   L  L  L+ ++I  + +          K
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPK 182

Query: 205 LITLDLRDNK 214
           L  L      
Sbjct: 183 LNQLYAFSQT 192

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 43/247 (17%), Positives = 81/247 (32%), Gaps = 33/247 (13%)

Query: 11  LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKL 70
             +       L   ++   + +    S L +   L+ L+  +        +  +     L
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK----WCLLTIILLMRAL 395

Query: 71  EVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVG 130
           + LL    +       ++  P     +  L    L       ++   ++ L L+H  L  
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT- 454

Query: 131 NFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLN 186
                  +   L     +  LD+S N    +P  +  +  L VL  S N LE N+   + 
Sbjct: 455 -------VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVA 505

Query: 187 HLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 246
           +L  L+ + +  N L        L                  L +L L+GNSL       
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLV-------------SCPRLVLLNLQGNSLC-QEEGI 551

Query: 247 LCQLAKL 253
             +LA++
Sbjct: 552 QERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 42/229 (18%), Positives = 79/229 (34%), Gaps = 20/229 (8%)

Query: 42  FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS 101
              L    L+    Q TF +    + S+ E +LL    +  +          QL   +LS
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK---DRPECWCRDSATDEQLFRCELS 357

Query: 102 DCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC-------GKMDDGLRSSTSLEGLDIS 154
             +  V+ S L     L+ L+  +   +    +            + L+  ++L+ +D  
Sbjct: 358 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417

Query: 155 GNIPNWIGNISTLRVLLMSKNYLEANIPVQL--NHLKSLELIDIFENSLSSKLITLDLRD 212
                       L    + K        + L    L  L  ++         +  LDL  
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL-----VTHLDLSH 472

Query: 213 NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
           N+    +P  +  L  L VL    N+L+ ++   +  L +L+ + L NN
Sbjct: 473 NRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNN 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 36/219 (16%)

Query: 4   SNNFEGHLPQCLNHLTHLKVLDIFNN-------------QLSGNFPSTLTNFTSLEYLDL 50
           S      L   L     L+ L+  N                      TL  F++L+ +D 
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 51  SSINFQGTFSINSLANHSKLEVL-----LLSSGSNMLQVKTESWHPTSQLKVLKLSDCQL 105
               +        L  +S L++      +L      L            +  L LS  +L
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRL 475

Query: 106 HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-IPNW---- 160
             +P  L     L+ L  S N L        +  DG+ +   L+ L +  N +       
Sbjct: 476 RALPPALAALRCLEVLQASDNAL--------ENVDGVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 161 -IGNISTLRVLLMSKNYLEANIPVQ---LNHLKSLELID 195
            + +   L +L +  N L     +Q      L S+  I 
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 25/197 (12%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
              L +    ++    ++     +    + ++  +  + N Q   S+  +   + L+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELH 69

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
           LS   N +          ++L+ L ++  +L  +    +    L  L L +N+L      
Sbjct: 70  LS--HNQIS-DLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNEL------ 118

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
             +  D L    +LE L I  N    I   +G +S L VL +  N +       L  LK 
Sbjct: 119 --RDTDSLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKK 173

Query: 191 LELIDIFENSLSSKLIT 207
           +  ID+      ++ + 
Sbjct: 174 VNWIDLTGQKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
           L  LT L+ L +  N+L             L  L L +   +     +SL +   LE+L 
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELR---DTDSLIHLKNLEILS 134

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
           +   +N L+         S+L+VL L   ++      L +   + ++DL+  K V N P+
Sbjct: 135 IR--NNKLK-SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV-NEPV 189

Query: 135 CGKMDDGLRSSTSLEGLDISGNIPNWIGNISTL 167
             K    L  + +++  D     P +I N  + 
Sbjct: 190 --KYQPELYITNTVKDPDGRWISPYYISNGGSY 220

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 31/171 (18%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLD 152
           S ++     +  +  + + +    +LK L LSHN++             L+  T LE L 
Sbjct: 41  SGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQI--------SDLSPLKDLTKLEELS 91

Query: 153 ISGNIPNWIGNIS--TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDL 210
           ++ N    +  I    L  L +  N L       L HLK+LE++ I  N L S       
Sbjct: 92  VNRNRLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKS------- 142

Query: 211 RDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
                       +  LS L VL L GN +       L +L K+  +DL+  
Sbjct: 143 ---------IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 52/256 (20%), Positives = 76/256 (29%), Gaps = 39/256 (15%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
           +  LT L  L   +N ++      L+  T+L YL   S           +   +KL  L 
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNL----DVTPLTKLTYLN 112

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
               +N L     S +P   L  L  +   L  I   +     L  LD   NK +    +
Sbjct: 113 CD--TNKLTKLDVSQNP--LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDV 166

Query: 135 CGKMDDGLRSSTSLEGLDISGNIPNWI--GNISTLRVLLMSKNYLEANIPVQLNHLKSLE 192
                      T L  LD S N    +       L  L    N +     + LN    L 
Sbjct: 167 TP--------QTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLT 215

Query: 193 LIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 245
            +D   N L+        +L   D   N         ++ LS L  L      L      
Sbjct: 216 FLDCSSNKLTEIDVTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLE---I 269

Query: 246 ELCQLAKLRIMDLSNN 261
           +L    +L        
Sbjct: 270 DLTHNTQLIYFQAEGC 285

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 40/270 (14%)

Query: 2   LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
            ++   +         L  L  LD  N+ ++    + +   T L  L  +S N     ++
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT---TL 79

Query: 62  NSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFL 121
           + L+ ++ L  L   S     ++      P ++L  L     +L  +         L +L
Sbjct: 80  D-LSQNTNLTYLACDSN----KLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL--LTYL 132

Query: 122 DLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---IPNWIGNISTLRVLLMSKNYLE 178
           + + N L          +  +  +T L  LD   N       +   + L  L  S N + 
Sbjct: 133 NCARNTLT---------EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183

Query: 179 ANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHV 231
               + ++  K L  ++   N+++        +L  LD   NK        +  L+ L  
Sbjct: 184 E---LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL---TEIDVTPLTQLTY 237

Query: 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNN 261
                N L   +   +  L+KL  +     
Sbjct: 238 FDCSVNPLT-ELD--VSTLSKLTTLHCIQT 264

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 38/269 (14%), Positives = 77/269 (28%), Gaps = 34/269 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           D   N     L   +   T L  LD   N+++      ++    L  L+  + N      
Sbjct: 154 DCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT---K 205

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
           ++ L  + +L  L  SS     ++      P +QL     S   L  +    L +  L  
Sbjct: 206 LD-LNQNIQLTFLDCSS----NKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSK--LTT 258

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN 180
           L      L+    +              +           + + + L +L      +   
Sbjct: 259 LHCIQTDLL-EIDLTH-----NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE- 311

Query: 181 IPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLL 233
             + L+    L  + +    L+        KL +L   +          + ++  L+   
Sbjct: 312 --LDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAH-IQDFS-SVGKIPALNNNF 367

Query: 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNI 262
                    +P E      L I    + +
Sbjct: 368 EAEGQTI-TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 43/255 (16%), Positives = 91/255 (35%), Gaps = 36/255 (14%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
           +  LT L  L+   N+L+      ++    L YL+ +        +   ++++++L  L 
Sbjct: 102 VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNT----LTEIDVSHNTQLTELD 154

Query: 75  LSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPI 134
                   ++      P +QL  L  S  ++  +   + Q   L  L+   N +     +
Sbjct: 155 C---HLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT-KLDL 208

Query: 135 CGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                     +  L  LD S N    I   +  ++ L     S N L       L+ L +
Sbjct: 209 NQ--------NIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTT 258

Query: 191 LEL----IDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 246
           L      +   + + +++LI       +    +   +   + L++L  +   +      +
Sbjct: 259 LHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELD 313

Query: 247 LCQLAKLRIMDLSNN 261
           L Q  KL  + L+N 
Sbjct: 314 LSQNPKLVYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 37/250 (14%), Positives = 75/250 (30%), Gaps = 35/250 (14%)

Query: 21  LKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80
                    ++      +     +L  LD  + +      +  +   + L  L+ +S   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN-- 74

Query: 81  MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDD 140
              + T      + L  L     +L  +   +     L +L+   NKL            
Sbjct: 75  --NITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKL---------TKL 121

Query: 141 GLRSSTSLEGLDISGNIPN--WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFE 198
            +  +  L  L+ + N      + + + L  L    N     +   +     L  +D   
Sbjct: 122 DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179

Query: 199 NSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLA 251
           N ++         L  L+   N    ++   +N+   L  L    N L      ++  L 
Sbjct: 180 NKITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLT 233

Query: 252 KLRIMDLSNN 261
           +L   D S N
Sbjct: 234 QLTYFDCSVN 243

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 53/245 (21%)

Query: 10  HLPQCLNHLTHLKVLDIFNNQLSGN----FPSTLTNFTSLEYLDLSSINFQGTFSINSLA 65
            L Q L     L  + + +N             L+  T LE+L L + N  G  +   +A
Sbjct: 85  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN-NGLGPQAGAKIA 143

Query: 66  NHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQL-----HVIPSFLLQQDHLKF 120
                  L   + +   +           L+ +     +L                 L  
Sbjct: 144 -----RALQELAVNKKAKNAP-------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---------IPNWIGNISTLRVLL 171
           + +  N +     I   + +GL     L+ LD+  N         +   + +   LR L 
Sbjct: 192 VKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250

Query: 172 MSKNYLEAN------IPVQLNHLKSLELIDIFENSLS---------------SKLITLDL 210
           ++   L A                 L+ + +  N +                  L+ L+L
Sbjct: 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 211 RDNKF 215
             N+F
Sbjct: 311 NGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 45/273 (16%), Positives = 89/273 (32%), Gaps = 56/273 (20%)

Query: 21  LKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLS--SINFQGTFSI-NSLANHSKLEVL 73
           ++   +  + ++     +  + L    S++ + LS  +I  +    +  ++A+   LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 74  LLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKL--VGN 131
             S               T ++K       +  ++   LL+   L  + LS N       
Sbjct: 66  EFSDIF------------TGRVKDEIPEALR--LLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 132 FPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSL 191
            P+     D L   T LE L +  N       +       +++   E  +  +  +   L
Sbjct: 112 EPLI----DFLSKHTPLEHLYLHNN------GLGPQAGAKIARALQELAVNKKAKNAPPL 161

Query: 192 ELIDIFENSL--------------SSKLITLDLRDNKFFGR-IPYQINEL----SNLHVL 232
             I    N L                 L T+ +  N      I + + E       L VL
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 233 LLRGNSL--QG--HIPNELCQLAKLRIMDLSNN 261
            L+ N+    G   +   L     LR + L++ 
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 60/252 (23%), Positives = 84/252 (33%), Gaps = 50/252 (19%)

Query: 12  PQC-LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKL 70
           P C ++ +     ++     L+   P  L        L LS  N   TFS+ +L  +++L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRL 57

Query: 71  EVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVG 130
             L L      L            L  L LS  QL  +P        L  LD+S N+L  
Sbjct: 58  TQLNLDR--AELTKLQVDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL-- 112

Query: 131 NFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS 190
                          TSL            +  +  L+ L +             N LK+
Sbjct: 113 ---------------TSLP--------LGALRGLGELQELYLKG-----------NELKT 138

Query: 191 LELIDIFENSLSSKLITLDLRDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNELCQ 249
           L    +       KL  L L +N     +P  + N L NL  LLL+ NSL   IP     
Sbjct: 139 LPP-GLL-TPT-PKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

Query: 250 LAKLRIMDLSNN 261
              L    L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 35/131 (26%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ---- 56
           DLS N  +  LP     L  L VLD+  N+L+      L     L+ L L     +    
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 57  GTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ 115
           G  +        KLE L L+  +N L  +     +    L  L L +  L+ IP      
Sbjct: 142 GLLT--PT---PKLEKLSLA--NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194

Query: 116 DHLKFLDLSHN 126
             L F  L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 43/209 (20%), Positives = 61/209 (29%), Gaps = 50/209 (23%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            LS N         L   T L  L++   +L+            L  LDLS         
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLS--------- 85

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLK 119
                              N LQ           L VL +S  +L  +P   L+    L+
Sbjct: 86  ------------------HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 120 FLDLSHNKL----VGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWI-GNISTLRVL 170
            L L  N+L     G                 LE L ++ N    +P  +   +  L  L
Sbjct: 128 ELYLKGNELKTLPPGLL-------TPT---PKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 171 LMSKNYLEANIPVQLNHLKSLELIDIFEN 199
           L+ +N L   IP        L    +  N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 7e-06
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 28  NNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTE 87
               + +    L    +L  L + +        +  L    +L  L +   S +  V  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI-VKSGLRFVAPD 74

Query: 88  SWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLV 129
           ++H T +L  L LS   L  +    +Q   L+ L LS N L 
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 1   DLSSNNFEGHLP-QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ--- 56
            + +     HL  + L  L  L+ L I  + L    P        L  L+LS    +   
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96

Query: 57  -GTFSINSL 64
             T    SL
Sbjct: 97  WKTVQGLSL 105

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 58  TFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-D 116
             S++ L     L  L + +  ++  ++        +L+ L +    L  +         
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 117 HLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156
            L  L+LS N L         +        SL+ L +SGN
Sbjct: 81  RLSRLNLSFNALE-------SLSWKTVQGLSLQELVLSGN 113

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 24/199 (12%)

Query: 11  LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANH-SK 69
           L   L+  + L+ L +   +LS    +TL   ++L  L+LS  +    F++ +L +  S+
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 70  LEVLLLSSGSNM--LQVKTESWHPTSQLKVLKLSDCQLHV----IPSFLLQQDHLKFLDL 123
           L+ L LS   +     V+    H +  +  L LS  + ++    + + + +  +L  LDL
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229

Query: 124 SHNKLVGNFPICGKMDDGLR---SSTSLEGLDISG--NIPN----WIGNISTLRVLLMSK 174
           S + ++         +D  +       L+ L +S   +I       +G I TL+ L +  
Sbjct: 230 SDSVMLK--------NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

Query: 175 NYLEANIPVQLNHLKSLEL 193
              +  + +    L  L++
Sbjct: 282 IVPDGTLQLLKEALPHLQI 300

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 24/192 (12%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
              K LD+ +N+LS          T L  L L+    Q T           LE L ++  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT-- 93

Query: 79  SNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKL----VGNF 132
            N LQ +    +     L  L+L   QL  +P  +      L +L L +N+L     G F
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 133 PICGKMDDGLRSSTSLEGLDISGN----IPNWI-GNISTLRVLLMSKNYLEANIPVQLNH 187
                  D L   TSL+ L +  N    +P      ++ L+ L +  N L+       + 
Sbjct: 154 -------DKL---TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 188 LKSLELIDIFEN 199
           L+ L+++ + EN
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 49/195 (25%), Positives = 73/195 (37%), Gaps = 39/195 (20%)

Query: 91  PTSQLKVLKLSDCQLHVIPSFLLQQ-DHLKFLDLSHNKL----VGNFPICGKMDDGLRSS 145
           P    K L L   +L  +PS    +   L+ L L+ NKL     G F         L   
Sbjct: 36  PAD-TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-------KEL--- 84

Query: 146 TSLEGLDISGN----IPNWI-GNISTLRVLLMSKN---YLEANIPVQLNHLKSLELIDIF 197
            +LE L ++ N    +P  +   +  L  L + +N    L   +   L  L  L L    
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL---G 141

Query: 198 ENSLSS----------KLITLDLRDNKFFGRIPYQI-NELSNLHVLLLRGNSLQGHIPNE 246
            N L S           L  L L +N+   R+P    ++L+ L  L L  N L+      
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

Query: 247 LCQLAKLRIMDLSNN 261
              L KL+++ L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 74/253 (29%)

Query: 11  LPQCL---NHLTHLKVLDIFNNQ-----LSGNFPSTLTNF-TSLEYLDLSSINFQGTF-- 59
              CL    ++ + K  + FN        +      +T+F ++     +S  +   T   
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 60  --SINSLANHSKLEV------------LLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQL 105
               + L  +                   LS  +  ++    +W     +   KL+    
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT---- 356

Query: 106 HVIPSFL--LQQDHLK--FLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI 161
            +I S L  L+    +  F  LS    V  FP                      +IP   
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLS----V--FP-----PSA--------------HIP--- 388

Query: 162 GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPY 221
                L ++       +  + V   H  SL      E+++S   I L+L+          
Sbjct: 389 --TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK---------V 437

Query: 222 QINELSNLHVLLL 234
           ++     LH  ++
Sbjct: 438 KLENEYALHRSIV 450

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 27/174 (15%)

Query: 38  TLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV 97
                T  E ++L  +         +L+     + L LS+  N ++ K  S      L++
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALST--NNIE-KISSLSGMENLRI 74

Query: 98  LKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN- 156
           L L    +  I +     D L+ L +S+N++            G+    +L  L +S N 
Sbjct: 75  LSLGRNLIKKIENLDAVADTLEELWISYNQI--------ASLSGIEKLVNLRVLYMSNNK 126

Query: 157 IPNW-----IGNISTLRVLLMSKNYLEANIPVQ----------LNHLKSLELID 195
           I NW     +  +  L  LL++ N L  +              +  L +L+ +D
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 115 QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNIST---LRVLL 171
           +  +   +    +L G  P   KMD  L +  + + L +S N    I ++S    LR+L 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILS 76

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKF--FGRIPY 221
           + +N ++  I        +LE + I  N ++S         L  L + +NK   +G I  
Sbjct: 77  LGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK 135

Query: 222 QINELSNLHVLLLRGNSLQGHIPNE 246
            +  L  L  LLL GN L       
Sbjct: 136 -LAALDKLEDLLLAGNPLYNDYKEN 159

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 44/295 (14%), Positives = 94/295 (31%), Gaps = 66/295 (22%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTL-----TNFTSLEYLDLSS--INFQGTFSINSL--A 65
            +    +  LD+  N L       L         S+  L+LS   + F+ +  +  +  A
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 66  NHSKLEVLLLSSGSNMLQVKTESW------HPTSQLKVLKLSDCQL------HVIPSFLL 113
             + +  L LS   N L  K+              + VL L               +F  
Sbjct: 78  IPANVTSLNLS--GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 114 QQDHLKFLDLSHNKL--VGNFPICGKMDDGLRS-STSLEGLDISGNIPNWIGNI------ 164
               +  L+L  N L    +  +       L +   ++  L++ G   N + +       
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELI----QILAAIPANVNSLNLRG---NNLASKNCAELA 188

Query: 165 -------STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKF-- 215
                  +++  L +S N L           KS   +    +S+ + +++L+L  N    
Sbjct: 189 KFLASIPASVTSLDLSANLLGL---------KSYAELAYIFSSIPNHVVSLNLCLNCLHG 239

Query: 216 --FGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK-------LRIMDLSNN 261
                +    + L +L  + L  + ++     +   L         + ++D +  
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 39/146 (26%)

Query: 79  SNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKM 138
           + +++   +  +     + L L   ++ VI +     D    +D S N++          
Sbjct: 6   AELIEQAAQYTNAVR-DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI---------- 54

Query: 139 DDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFE 198
                    L+G             +  L+ LL++ N +          L  L  + +  
Sbjct: 55  -------RKLDGFP----------LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 199 NSLSS-----------KLITLDLRDN 213
           NSL              L  L +  N
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRN 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 15  LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLL 74
           L  L  LK L++  N++ G          +L +L+LS    +   ++  L     L+ L 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 75  LS 76
           L 
Sbjct: 127 LF 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.26
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	90.87

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-33  Score=255.64  Aligned_cols=74  Identities=34%  Similarity=0.595  Sum_probs=40.1

Q ss_pred             ceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          205 LITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      |+.|++++|++++.+|..+..++.|+.|++++|.+++.+|..+..+++|+.||+++|+++|.+|+.++.+++|+
T Consensus       634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.7e-32  Score=245.41  Aligned_cols=261  Identities=34%  Similarity=0.447  Sum_probs=202.0

Q ss_pred             CCCCcCcCCCCccccC--CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            2 LSSNNFEGHLPQCLNH--LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      |++|.+.+..|..+..  +++|++|++++|.+++..|..+.++++|++|++++|.+.+.. +..+..+++|+.|++++|.
T Consensus       375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~  453 (768)
T 3rgz_A          375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNM  453 (768)
T ss_dssp             CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEEECCSSC
T ss_pred             ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc-cHHHhcCCCCCEEECCCCc
Confidence            4555555555555554  666777777777777677777777777777777777776333 3566777777888777776


Q ss_pred             ccccccCCCCCCCCceeEEEecCCcCc-ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--
Q 044855           80 NMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--  156 (279)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--  156 (279)
                      ....+ +..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+      ..+..+..+++|++|++++|  
T Consensus       454 l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          454 LEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG------EIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             CCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCcC-CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC------cCChHHhcCCCCCEEECCCCcc
Confidence            43333 344667778888888888774 667777778888888888887763      34466777888888888876  


Q ss_pred             ---CCccccCCCCCcEEEccccEeeeeccc--------------------------------------------------
Q 044855          157 ---IPNWIGNISTLRVLLMSKNYLEANIPV--------------------------------------------------  183 (279)
Q Consensus       157 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~--------------------------------------------------  183 (279)
                         +|..++.+++|+.|++++|.+.+..|.                                                  
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence               566778888888888888877644443                                                  


Q ss_pred             --------------------cccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEE
Q 044855          184 --------------------QLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLL  233 (279)
Q Consensus       184 --------------------~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  233 (279)
                                          .+..+++|+.|++++|.+..          .|+.|++++|++++.+|..+..+++|+.|+
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence                                34456789999999998863          899999999999999999999999999999


Q ss_pred             ccCCcccccCChhhhcccCCcEEEccCCEeeeecCcc
Q 044855          234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC  270 (279)
Q Consensus       234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  270 (279)
                      +++|++++.+|..+..+++|+.|++++|+++|.+|+.
T Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            9999999999999999999999999999999999963

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.1e-32  Score=241.07  Aligned_cols=269  Identities=23%  Similarity=0.267  Sum_probs=230.9

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ++++|.+.+..+.+|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+. ......+..+++|++|++++|..
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCc
Confidence            46788999888889999999999999999998 78888999999999999999987 44446788999999999999987


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCccc---ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVI---PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI  157 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  157 (279)
                      ...++...+..+++|++|++++|.+..+   +..+..+++|+.|++++|.+.+.      .+..+..+++|++|+++++-
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL------KTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE------CTTTTTTCTTCSEEECTTCC
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC------CHHHhcCCccCCeEECCCCc
Confidence            6677777789999999999999998655   56788899999999999987643      34567788899999998771


Q ss_pred             ------CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------------cceEEEeecCccCCC
Q 044855          158 ------PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------------KLITLDLRDNKFFGR  218 (279)
Q Consensus       158 ------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------------~L~~L~l~~~~~~~~  218 (279)
                            +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..             +|+.|++++|++.+.
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence                  2347788999999999999888777888899999999999997642             789999999999888


Q ss_pred             CchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          219 IPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       219 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      .+..+..+++|+.|++++|++++..+..+..++.| .|++++|.+++..|+.++.++.|+
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence            88888899999999999999998888899999999 999999999977787777777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-32  Score=233.83  Aligned_cols=269  Identities=21%  Similarity=0.184  Sum_probs=153.2

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..+.+|.++++|++|+|++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus        38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i  116 (477)
T 2id5_A           38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI  116 (477)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCC
T ss_pred             ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCcc
Confidence            46777787777778888888888888888877666777888888888888888776 44445567777788888877753


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC---
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---  156 (279)
                       .......+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+.+.      ....+..+++|+.|+++++   
T Consensus       117 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          117 -VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI------PTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             -CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC------CHHHHTTCTTCCEEEEESCCCC
T ss_pred             -ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc------ChhHhcccCCCcEEeCCCCcCc
Confidence             3444455667777777777777765443 3556667777777777765521      1234555566666666554   


Q ss_pred             --CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhh
Q 044855          157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQIN  224 (279)
Q Consensus       157 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~  224 (279)
                        .+..+..+++|+.|++++|...+..+.......+|+.|++++|.+..          +|+.|++++|.+.+..+..+.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence              12234445555555555543332233322233344444444443322          444444444444433333444


Q ss_pred             cCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855          225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW  277 (279)
Q Consensus       225 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l  277 (279)
                      .+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..|..++.|
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  322 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL  322 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence            44444444444444444444444444444444444444443333334444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.2e-32  Score=233.79  Aligned_cols=277  Identities=22%  Similarity=0.234  Sum_probs=178.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCccccc-CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN-FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      ||++|.+++..|.+|+++++|++|++++|.+.+. .+..|.++++|++|++++|.+. ......+..+++|++|++++|.
T Consensus        36 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~  114 (455)
T 3v47_A           36 DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCN  114 (455)
T ss_dssp             ECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCEEECTTSC
T ss_pred             EecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-ccChhhccCcccCCEEeCCCCC
Confidence            5789999988899999999999999999988644 3567889999999999999887 4445678889999999999887


Q ss_pred             cccc-ccCCCCCCCCceeEEEecCCcCccc-Chh-hhcCCCccEEEeeCCcccccCCCCCcCc-----------------
Q 044855           80 NMLQ-VKTESWHPTSQLKVLKLSDCQLHVI-PSF-LLQQDHLKFLDLSHNKLVGNFPICGKMD-----------------  139 (279)
Q Consensus        80 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------------  139 (279)
                      .... .....+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+.+..+..-...                 
T Consensus       115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~  194 (455)
T 3v47_A          115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD  194 (455)
T ss_dssp             CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred             CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence            5432 2334578889999999999988766 443 7788999999999988765443100000                 


Q ss_pred             -----------chhhccCcccceeccCCCCc-----cc-------------------------------------c--CC
Q 044855          140 -----------DGLRSSTSLEGLDISGNIPN-----WI-------------------------------------G--NI  164 (279)
Q Consensus       140 -----------~~~~~~~~L~~l~l~~~~~~-----~~-------------------------------------~--~~  164 (279)
                                 ..+..+++|++|+++++-..     .+                                     .  ..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
T 3v47_A          195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA  274 (455)
T ss_dssp             CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred             cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence                       00122345666666554110     00                                     0  01


Q ss_pred             CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEEc
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLL  234 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  234 (279)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|.+..          +|+.|++++|.+.+..+..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            355555555555555555555556666666666555432          5556666666555544555555556666666


Q ss_pred             cCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          235 RGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       235 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ++|++++..+..+..+++|+.|++++|.+++..+..|..++.|+
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence            66665555555555556666666666665543333445555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=4e-31  Score=227.00  Aligned_cols=269  Identities=21%  Similarity=0.197  Sum_probs=211.6

Q ss_pred             CCCCCcCcC-CCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccc-hhhhcccccceeeeecCC
Q 044855            1 DLSSNNFEG-HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS-INSLANHSKLEVLLLSSG   78 (279)
Q Consensus         1 ~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~   78 (279)
                      +|++|.+.+ ..+.+|+.+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+ ...+..+++|++|++++|
T Consensus        60 ~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  139 (455)
T 3v47_A           60 KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN  139 (455)
T ss_dssp             ECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred             ECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence            467787763 446788999999999999999987778889999999999999998874332 234778899999999888


Q ss_pred             cccccccCCCCCCCCceeEEEecCCcCcccC-hhhh----------------------------------cCCCccEEEe
Q 044855           79 SNMLQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLL----------------------------------QQDHLKFLDL  123 (279)
Q Consensus        79 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~----------------------------------~~~~L~~L~l  123 (279)
                      ......+...+..+++|++|++++|.+..++ ..+.                                  .+++|+.|++
T Consensus       140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L  219 (455)
T 3v47_A          140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL  219 (455)
T ss_dssp             BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred             ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence            7544444444788889999999988875442 2222                                  3367888888


Q ss_pred             eCCcccccCCC-------------------------------CCcCcchhh--ccCcccceeccCC-----CCccccCCC
Q 044855          124 SHNKLVGNFPI-------------------------------CGKMDDGLR--SSTSLEGLDISGN-----IPNWIGNIS  165 (279)
Q Consensus       124 ~~~~~~~~~~~-------------------------------~~~~~~~~~--~~~~L~~l~l~~~-----~~~~~~~~~  165 (279)
                      ++|.+.+..+.                               .......+.  ..++|+.++++++     .+..++.++
T Consensus       220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  299 (455)
T 3v47_A          220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT  299 (455)
T ss_dssp             TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence            88765431110                               000001111  2357899999887     466788899


Q ss_pred             CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855          166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLR  235 (279)
Q Consensus       166 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  235 (279)
                      +|+.|++++|.+++..+..+..+++|+.|++++|.+..          +|+.|++++|++.+..+..+..+++|+.|+++
T Consensus       300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence            99999999999999888899999999999999998754          89999999999988888899999999999999


Q ss_pred             CCcccccCChhhhcccCCcEEEccCCEeeeecCc
Q 044855          236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS  269 (279)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~  269 (279)
                      +|++++..+..+..+++|+.|++++|++++..|.
T Consensus       380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999977777888999999999999999988874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=224.17  Aligned_cols=258  Identities=22%  Similarity=0.258  Sum_probs=223.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      +|++|.+.+..|.+|.++++|++|+|++|.++...+..|.++++|++|++++|.+. ......+..+++|++|++++|. 
T Consensus        62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~-  139 (477)
T 2id5_A           62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND-  139 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTT-
T ss_pred             ECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCc-
Confidence            57899999888999999999999999999999666667899999999999999987 4455678999999999999886 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC---
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---  156 (279)
                      ...+....+..+++|++|++++|.+..++. .+..+++|+.|++++|.+....      ...+..+++|+.|+++++   
T Consensus       140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~------~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR------DYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC------TTCSCSCTTCCEEEEECCTTC
T ss_pred             cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC------hhhcccCcccceeeCCCCccc
Confidence            445566778999999999999999988876 5778999999999999887433      346778899999999976   


Q ss_pred             --CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhh
Q 044855          157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQIN  224 (279)
Q Consensus       157 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~  224 (279)
                        ++.......+|+.|++++|.++...+..+..+++|+.|++++|.+..          +|+.|++++|++.+..+..+.
T Consensus       214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred             cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence              33334445689999999999988555678999999999999998754          899999999999988888999


Q ss_pred             cCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855          225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       225 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  266 (279)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999999999999999977777888999999999999999854

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=3.2e-31  Score=236.09  Aligned_cols=265  Identities=19%  Similarity=0.224  Sum_probs=174.9

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCc-ccc-cCCccccCC------CcCcEEeccCcccCcccch-hhhccccccee
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQ-LSG-NFPSTLTNF------TSLEYLDLSSINFQGTFSI-NSLANHSKLEV   72 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~   72 (279)
                      |++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.+. .++. ..+..+++|++
T Consensus       256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~  334 (636)
T 4eco_A          256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM  334 (636)
T ss_dssp             EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred             ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence            45666666677777777777777777776 665 566655554      67777777777666 3332 25677777777


Q ss_pred             eeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCC-ccEEEeeCCcccccCCCCCcCcchhhc--cCccc
Q 044855           73 LLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDH-LKFLDLSHNKLVGNFPICGKMDDGLRS--STSLE  149 (279)
Q Consensus        73 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~~L~  149 (279)
                      |++++|.....++  .+..+++|++|++++|.+..+|..+..+++ |+.|++++|.+. ..      +..+..  +++|+
T Consensus       335 L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l------p~~~~~~~l~~L~  405 (636)
T 4eco_A          335 LECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI------PNIFDAKSVSVMS  405 (636)
T ss_dssp             EECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC------CSCCCTTCSSCEE
T ss_pred             EeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-cc------chhhhhcccCccC
Confidence            7777776544555  566777777788877777777777777777 888888887765 22      223333  23677


Q ss_pred             ceeccCC-----CCcccc-------CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc--------------
Q 044855          150 GLDISGN-----IPNWIG-------NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------------  203 (279)
Q Consensus       150 ~l~l~~~-----~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--------------  203 (279)
                      .++++++     .|..+.       .+++|+.|++++|.++...+..+..+++|+.|++++|.+..              
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~  485 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK  485 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence            7777665     234444       55577777777777765333345556777777777776542              


Q ss_pred             ---cceEEEeecCccCCCCchhhh--cCcCCcEEEccCCcccccCChhhhcccCCcEEEc------cCCEeeeecCcccc
Q 044855          204 ---KLITLDLRDNKFFGRIPYQIN--ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDL------SNNIFSGSIPSCLG  272 (279)
Q Consensus       204 ---~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~l~~~~p~~~~  272 (279)
                         +|+.|++++|++. .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++      ++|.+.+.+|+.++
T Consensus       486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~  563 (636)
T 4eco_A          486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT  563 (636)
T ss_dssp             TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred             ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence               4677777777775 4555554  67777777777777774 6666777777777777      45666667777777


Q ss_pred             CCcccc
Q 044855          273 NVSFWR  278 (279)
Q Consensus       273 ~~~~l~  278 (279)
                      .++.|+
T Consensus       564 ~l~~L~  569 (636)
T 4eco_A          564 LCPSLT  569 (636)
T ss_dssp             GCSSCC
T ss_pred             cCCCCC
Confidence            766665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=2.5e-30  Score=229.61  Aligned_cols=128  Identities=21%  Similarity=0.235  Sum_probs=90.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. ...+..+.++++|++|++++|..
T Consensus        38 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcCCcccCCEEEccCCcc
Confidence            46777777777777888888888888888777666777778888888888888776 34445677777777777777753


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVG  130 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~  130 (279)
                       ...+...+..+++|++|++++|.+.  .+|..+..+++|+.|++++|.+.+
T Consensus       117 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          117 -ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             -CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             -ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence             3444445667777777777777764  356666777777777777666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3.3e-30  Score=228.84  Aligned_cols=125  Identities=19%  Similarity=0.205  Sum_probs=77.1

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..|.+|+++++|++|++++|.+.+..|..|.++++|++|++++|.+. ......+..+++|++|++++|..
T Consensus        39 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i  117 (606)
T 3t6q_A           39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGI  117 (606)
T ss_dssp             ECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCC
T ss_pred             EccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCc
Confidence            46777777777777788888888888887777666777777777777777777776 33345566667777777766642


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNK  127 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~  127 (279)
                       ..+....+..+++|++|++++|.+..++ ..+..+++|+.|++++|.
T Consensus       118 -~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A          118 -SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             -SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred             -ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence             2332333455555555555555554331 122224444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=2.1e-30  Score=230.05  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=39.7

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCC
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG   78 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   78 (279)
                      |++|.+++..|.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. ..+...+.++++|++|++++|
T Consensus        63 Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n  138 (606)
T 3vq2_A           63 LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHN  138 (606)
T ss_dssp             CTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSS
T ss_pred             CCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCC
Confidence            4555555555555666666666666666655444555555555555555555554 222222344444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=9.5e-31  Score=233.04  Aligned_cols=265  Identities=20%  Similarity=0.281  Sum_probs=224.6

Q ss_pred             CCCCCcCcCC-----------------CCcccc--CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCc-cc
Q 044855            1 DLSSNNFEGH-----------------LPQCLN--HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQG-TF   59 (279)
Q Consensus         1 ~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~   59 (279)
                      ||++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..|.++++|++|++++|. +++ .+
T Consensus       212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l  291 (636)
T 4eco_A          212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL  291 (636)
T ss_dssp             EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHH
T ss_pred             ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccc
Confidence            4678888875                 899998  99999999999999999999999999999999999998 775 33


Q ss_pred             chhhhcc------cccceeeeecCCcccccccC-CCCCCCCceeEEEecCCcCc-ccChhhhcCCCccEEEeeCCccccc
Q 044855           60 SINSLAN------HSKLEVLLLSSGSNMLQVKT-ESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGN  131 (279)
Q Consensus        60 ~~~~~~~------~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~  131 (279)
                      + ..+..      +++|++|++++|... .++. ..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+.  
T Consensus       292 p-~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--  366 (636)
T 4eco_A          292 K-DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--  366 (636)
T ss_dssp             H-HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--
T ss_pred             h-HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--
Confidence            3 44444      499999999999755 5543 26789999999999999997 899 8888999999999999987  


Q ss_pred             CCCCCcCcchhhccCc-ccceeccCC----CCccccCCC--CCcEEEccccEeeeecccccc-------CCCCccEEecc
Q 044855          132 FPICGKMDDGLRSSTS-LEGLDISGN----IPNWIGNIS--TLRVLLMSKNYLEANIPVQLN-------HLKSLELIDIF  197 (279)
Q Consensus       132 ~~~~~~~~~~~~~~~~-L~~l~l~~~----~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~-------~~~~L~~l~l~  197 (279)
                           .++..+..+++ |++|+++++    +|..+....  +|+.|++++|.+++..|..+.       .+++|+.|+++
T Consensus       367 -----~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls  441 (636)
T 4eco_A          367 -----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS  441 (636)
T ss_dssp             -----ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred             -----cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence                 44567888999 999999987    555555544  899999999999887777777       78899999999


Q ss_pred             CCcCcc----------cceEEEeecCccCCCCchh-hhc-------CcCCcEEEccCCcccccCChhhh--cccCCcEEE
Q 044855          198 ENSLSS----------KLITLDLRDNKFFGRIPYQ-INE-------LSNLHVLLLRGNSLQGHIPNELC--QLAKLRIMD  257 (279)
Q Consensus       198 ~~~~~~----------~L~~L~l~~~~~~~~~~~~-~~~-------~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~  257 (279)
                      +|.+..          +|+.|++++|++. .+|.. +..       +++|+.|++++|+++ .+|..+.  .+++|+.|+
T Consensus       442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~  519 (636)
T 4eco_A          442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGID  519 (636)
T ss_dssp             SSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred             CCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence            998764          7999999999997 45443 332       239999999999999 7888876  899999999


Q ss_pred             ccCCEeeeecCccccCCcccc
Q 044855          258 LSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       258 l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      +++|.+++ +|..+..++.|+
T Consensus       520 Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          520 LSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             CCSSCCSS-CCCGGGGCSSCC
T ss_pred             CCCCCCCC-cChhhhcCCCCC
Confidence            99999996 999999988886

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.3e-29  Score=208.69  Aligned_cols=253  Identities=23%  Similarity=0.309  Sum_probs=164.0

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc--
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS--   79 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--   79 (279)
                      ++++.+... + ++..+++|++|++++|.+++ ++. +..+++|++|++++|.+.. .  ..+..+++|++|++++|.  
T Consensus        51 l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~--~~~~~l~~L~~L~l~~n~i~  123 (347)
T 4fmz_A           51 VAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I--SALQNLTNLRELYLNEDNIS  123 (347)
T ss_dssp             CCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCSEEECTTSCCC
T ss_pred             EeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c--hHHcCCCcCCEEECcCCccc
Confidence            344444422 2 25555566666666555552 222 5555555555555555442 1  234455555555555443  


Q ss_pred             --------------------ccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCc
Q 044855           80 --------------------NMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMD  139 (279)
Q Consensus        80 --------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  139 (279)
                                          .....+  .+..+++|++|++++|.+..++. +..+++|+.|++++|.+.+       ..
T Consensus       124 ~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~  193 (347)
T 4fmz_A          124 DISPLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-------IS  193 (347)
T ss_dssp             CCGGGTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC-------CG
T ss_pred             CchhhccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc-------cc
Confidence                                222211  13445555555555555544433 4455666666666655431       11


Q ss_pred             chhhccCcccceeccCCCC---ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc--------cceEE
Q 044855          140 DGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------KLITL  208 (279)
Q Consensus       140 ~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--------~L~~L  208 (279)
                       .+..+++|+.++++++-.   ..+..+++|+.|++++|.++...+  +..+++|+.|++++|.+..        +|+.|
T Consensus       194 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  270 (347)
T 4fmz_A          194 -PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKML  270 (347)
T ss_dssp             -GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             -cccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEE
Confidence             256677777777776622   225677889999999998877433  7888999999999887764        89999


Q ss_pred             EeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          209 DLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       209 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ++++|++.+.  ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|  +..++.|+
T Consensus       271 ~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          271 NVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             EccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            9999988764  457889999999999999998888889999999999999999986555  67777665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.1e-30  Score=211.81  Aligned_cols=234  Identities=26%  Similarity=0.378  Sum_probs=157.8

Q ss_pred             CCccEEEeeCCcccc--cCCccccCCCcCcEEeccC-cccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           19 THLKVLDIFNNQLSG--NFPSTLTNFTSLEYLDLSS-INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      .+++.|+++++.+.+  .+|..|.++++|++|++++ |.+.+.. +..+..+++|++|++++|..... .+..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence            567778888887776  6777777788888888874 6665333 35567777888888877754323 33456777788


Q ss_pred             eEEEecCCcCc-ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccC-cccceeccCC-----CCccccCCCCCc
Q 044855           96 KVLKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSST-SLEGLDISGN-----IPNWIGNISTLR  168 (279)
Q Consensus        96 ~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~-----~~~~~~~~~~L~  168 (279)
                      ++|++++|.+. .+|..+..+++|++|++++|.+.+.      .+..+..+. .|++++++++     .+..+..++ |+
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~  200 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA  200 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc------CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence            88888888775 6677777778888888888776532      335556665 6777777765     455666666 88


Q ss_pred             EEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855          169 VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL  239 (279)
Q Consensus       169 ~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (279)
                      .|++++|.+++..+..+..+++|+.|++++|.+..         +|++|++++|++.+.+|..+..+++|+.|++++|++
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            88888888887777777888888877777776542         455555555555555555555666666666666666


Q ss_pred             cccCChhhhcccCCcEEEccCCE
Q 044855          240 QGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       240 ~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      ++.+|.. ..+++|+.+++++|+
T Consensus       281 ~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          281 CGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccCCCC-ccccccChHHhcCCC
Confidence            5555554 455566666666665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.9e-30  Score=217.41  Aligned_cols=248  Identities=20%  Similarity=0.238  Sum_probs=156.0

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.++..++..++.+++|++|++++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|++|++++|. .
T Consensus        52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l  129 (390)
T 3o6n_A           52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-L  129 (390)
T ss_dssp             EESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             ecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCc-c
Confidence            3456666555566777888888888888877666667778888888888888776 4444567777888888887775 3


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW  160 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  160 (279)
                      ..++...+..+++|++|++++|.+..++. .+..+++|+.|++++|.+...         .+..+++|+.++++++....
T Consensus       130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------CGGGCTTCSEEECCSSCCSE
T ss_pred             CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------ccccccccceeecccccccc
Confidence            45666666778888888888887766643 466778888888888776532         23344555555555543333


Q ss_pred             ccCCC---------------------CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEE
Q 044855          161 IGNIS---------------------TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLD  209 (279)
Q Consensus       161 ~~~~~---------------------~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~  209 (279)
                      +...+                     +|+.|++++|.+++.  ..+..+++|+.|++++|.+..          +|+.|+
T Consensus       201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence            33333                     455555555544431  245555666666666665432          566666


Q ss_pred             eecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855          210 LRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       210 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      +++|++.+ ++..+..+++|+.|++++|+++ .++..+..+++|+.|++++|.++
T Consensus       279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence            66666543 3333445566666666666665 44555556666666666666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=1.8e-29  Score=225.06  Aligned_cols=276  Identities=23%  Similarity=0.224  Sum_probs=210.0

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.|+...+.+|+++++|++|+|++|++++..+.+|.++++|++|++++|.+. ..+...+.++++|++|++++|. 
T Consensus        58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~-  135 (635)
T 4g8a_A           58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN-  135 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSC-
T ss_pred             EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCc-
Confidence            68999999888899999999999999999999777788999999999999999987 5666788999999999999886 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCcccccCCCC-----------------------
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLVGNFPIC-----------------------  135 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------  135 (279)
                      +..++...|+.+++|++|++++|.+..  +|..+..+++|++|++++|.+.+..+..                       
T Consensus       136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~  215 (635)
T 4g8a_A          136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  215 (635)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence            456677778999999999999999864  4677888999999999988764321100                       


Q ss_pred             --------------------------------------------------------------------------------
Q 044855          136 --------------------------------------------------------------------------------  135 (279)
Q Consensus       136 --------------------------------------------------------------------------------  135 (279)
                                                                                                      
T Consensus       216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~  295 (635)
T 4g8a_A          216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL  295 (635)
T ss_dssp             ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred             cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------CcCcchhhccCcccc
Q 044855          136 -----------------------------------------------------------------GKMDDGLRSSTSLEG  150 (279)
Q Consensus       136 -----------------------------------------------------------------~~~~~~~~~~~~L~~  150 (279)
                                                                                       .........+++|+.
T Consensus       296 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~  375 (635)
T 4g8a_A          296 DGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF  375 (635)
T ss_dssp             EECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCE
T ss_pred             cchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccccc
Confidence                                                                             000000001223333


Q ss_pred             eeccCCC------------------------------C-------------------------ccccCCCCCcEEEcccc
Q 044855          151 LDISGNI------------------------------P-------------------------NWIGNISTLRVLLMSKN  175 (279)
Q Consensus       151 l~l~~~~------------------------------~-------------------------~~~~~~~~L~~L~l~~~  175 (279)
                      ++++++.                              +                         ..+..+++++.++++.|
T Consensus       376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n  455 (635)
T 4g8a_A          376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  455 (635)
T ss_dssp             EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred             chhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            3333210                              0                         11223344555555555


Q ss_pred             EeeeeccccccCCCCccEEeccCCcCcc-----------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855          176 YLEANIPVQLNHLKSLELIDIFENSLSS-----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP  244 (279)
Q Consensus       176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~-----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (279)
                      .+....+..+..++.++.+++++|....           +|+.|++++|++.+..|..|.++++|+.|++++|++++..+
T Consensus       456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  535 (635)
T 4g8a_A          456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  535 (635)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred             ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence            5555556666777888888888775321           78999999999988888889999999999999999998888


Q ss_pred             hhhhcccCCcEEEccCCEeeeecCccccCC-cccc
Q 044855          245 NELCQLAKLRIMDLSNNIFSGSIPSCLGNV-SFWR  278 (279)
Q Consensus       245 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~l~  278 (279)
                      ..+..+++|+.|++++|++++..|+.+..+ +.|+
T Consensus       536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence            889999999999999999998888888776 4554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.7e-30  Score=226.25  Aligned_cols=127  Identities=20%  Similarity=0.278  Sum_probs=95.2

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..+.+|+.+++|++|++++|.+++..+..|.++++|++|++++|.+. ..+...+..+++|++|++++|. 
T Consensus        34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-  111 (570)
T 2z63_A           34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN-  111 (570)
T ss_dssp             ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSC-
T ss_pred             EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccc-
Confidence            57788888777888888888888888888888766777888888888888888876 4445667778888888887775 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~  129 (279)
                      ...++...+..+++|++|++++|.+..  +|..+..+++|+.|++++|.+.
T Consensus       112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            334444446777777778777777754  5667777777777777776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1e-29  Score=231.15  Aligned_cols=264  Identities=21%  Similarity=0.236  Sum_probs=153.7

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCc-ccc-cCCccccCCC-------cCcEEeccCcccCcccch-hhhcccccce
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQ-LSG-NFPSTLTNFT-------SLEYLDLSSINFQGTFSI-NSLANHSKLE   71 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~-~~~~~~~~L~   71 (279)
                      |++|.+.+.+|..|.++++|++|++++|+ +++ .+|..+..++       +|++|++++|.+. .++. ..+..+++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            45666666666667777777777777766 665 5555444433       6777777777665 3332 2567777777


Q ss_pred             eeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCC-ccEEEeeCCcccccCCCCCcCcchhhcc--Ccc
Q 044855           72 VLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDH-LKFLDLSHNKLVGNFPICGKMDDGLRSS--TSL  148 (279)
Q Consensus        72 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~L  148 (279)
                      .|++++|... .++  .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.+. ..|      ..+...  ++|
T Consensus       577 ~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp------~~~~~~~~~~L  646 (876)
T 4ecn_A          577 LLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP------NIFNAKSVYVM  646 (876)
T ss_dssp             EEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC------SCCCTTCSSCE
T ss_pred             EEECCCCCcc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc------hhhhccccCCC
Confidence            7777777644 444  567777788888887777777777777777 888888777765 222      222222  225


Q ss_pred             cceeccCCC-----Cc---ccc--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------------
Q 044855          149 EGLDISGNI-----PN---WIG--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------------  203 (279)
Q Consensus       149 ~~l~l~~~~-----~~---~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------------  203 (279)
                      +.|++++|-     +.   .+.  .+++|+.|++++|.++...+..+..+++|+.|++++|.+..               
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence            555555441     11   111  12355566666655554222223355666666666555431               


Q ss_pred             --cceEEEeecCccCCCCchhhh--cCcCCcEEEccCCcccccCChhhhcccCCcEEEccC------CEeeeecCccccC
Q 044855          204 --KLITLDLRDNKFFGRIPYQIN--ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSN------NIFSGSIPSCLGN  273 (279)
Q Consensus       204 --~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~p~~~~~  273 (279)
                        +|+.|++++|++. .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++      |.+.+.+|..++.
T Consensus       727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~  804 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT  804 (876)
T ss_dssp             GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence              4556666666654 4454444  55666666666666653 455555666666666644      5555566666655


Q ss_pred             Ccccc
Q 044855          274 VSFWR  278 (279)
Q Consensus       274 ~~~l~  278 (279)
                      ++.|+
T Consensus       805 L~~L~  809 (876)
T 4ecn_A          805 CPSLI  809 (876)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            55554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.3e-29  Score=224.29  Aligned_cols=250  Identities=20%  Similarity=0.217  Sum_probs=165.9

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.+...++..|+.+++|++|++++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|++|++++|. +
T Consensus        58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l  135 (597)
T 3oja_B           58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-L  135 (597)
T ss_dssp             ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCC-C
Confidence            4566677666677888888999999888888777778888899999999988887 4555667888889999988885 4


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW  160 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  160 (279)
                      ..++...|..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+.         .+..+++|+.++++++....
T Consensus       136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------ChhhhhhhhhhhcccCcccc
Confidence            46666667888889999998888866654 577788899999988877632         23445566666666554444


Q ss_pred             ccCCCCCcEEEccccEeeeec-------------------cccccCCCCccEEeccCCcCcc----------cceEEEee
Q 044855          161 IGNISTLRVLLMSKNYLEANI-------------------PVQLNHLKSLELIDIFENSLSS----------KLITLDLR  211 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~~~~-------------------~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~  211 (279)
                      +...++|+.|++++|.+....                   +..+..+++|+.|++++|.+..          +|+.|+++
T Consensus       207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence            444444555554444443321                   2334555566666666555432          55566666


Q ss_pred             cCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855          212 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      +|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus       287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             TSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             CCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence            665543 3334444566666666666665 44555556666666666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=6.5e-29  Score=227.94  Aligned_cols=257  Identities=22%  Similarity=0.214  Sum_probs=171.6

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccC-CccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNF-PSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      ||++|.++...+.+|+++++|++|++++|...+.+ |..|.++++|++|++++|.+. ...+..+.++++|++|++++|.
T Consensus        30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCC
T ss_pred             ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCC
Confidence            57889999888899999999999999998554444 778999999999999999887 4555788899999999999887


Q ss_pred             ccccccC-CCCCCCCceeEEEecCCcCcccC--hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhcc--Cc-------
Q 044855           80 NMLQVKT-ESWHPTSQLKVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSS--TS-------  147 (279)
Q Consensus        80 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~-------  147 (279)
                      .....+. ..+..+++|++|++++|.+..++  ..+..+++|+.|++++|.+.+..+      ..+..+  ++       
T Consensus       109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~------~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE------HELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS------GGGHHHHHCSSCCCEEC
T ss_pred             CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH------HHcccccCCccceEECC
Confidence            5443332 34788999999999999886653  467889999999999988764322      222222  33       


Q ss_pred             -----------------------ccceeccCC-----CCccc------------------------------------cC
Q 044855          148 -----------------------LEGLDISGN-----IPNWI------------------------------------GN  163 (279)
Q Consensus       148 -----------------------L~~l~l~~~-----~~~~~------------------------------------~~  163 (279)
                                             |+.++++++     .+..+                                    ..
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence                                   455555443     01000                                    00


Q ss_pred             --CCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855          164 --ISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHV  231 (279)
Q Consensus       164 --~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~  231 (279)
                        .++|+.|++++|.+....+..+..+++|+.|++++|.+..          +|+.|++++|.+.+..+..+..+++|+.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence              1345556666555555555555556666666666555432          5566666666665555555556666666


Q ss_pred             EEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855          232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      |++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            666666665444555555666666666666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.9e-29  Score=203.23  Aligned_cols=225  Identities=29%  Similarity=0.416  Sum_probs=195.7

Q ss_pred             CcCcEEeccCcccCc--ccchhhhcccccceeeeecC-CcccccccCCCCCCCCceeEEEecCCcCc-ccChhhhcCCCc
Q 044855           43 TSLEYLDLSSINFQG--TFSINSLANHSKLEVLLLSS-GSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHL  118 (279)
Q Consensus        43 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L  118 (279)
                      .++++|++++|.+.+  .. +..+..+++|++|++++ +.... ..+..+..+++|++|++++|.+. .+|..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            689999999999985  33 36788999999999995 55433 34456789999999999999996 888899999999


Q ss_pred             cEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCC-CCcEEEccccEeeeeccccccCCCCcc
Q 044855          119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNIS-TLRVLLMSKNYLEANIPVQLNHLKSLE  192 (279)
Q Consensus       119 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~-~L~~L~l~~~~l~~~~~~~l~~~~~L~  192 (279)
                      ++|++++|.+.+      ..+..+..+++|++|+++++     +|..+..++ .|+.|++++|.+++..|..+..++ |+
T Consensus       128 ~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~  200 (313)
T 1ogq_A          128 VTLDFSYNALSG------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA  200 (313)
T ss_dssp             CEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred             CEEeCCCCccCC------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence            999999999874      34577889999999999987     566778887 999999999999988898898887 99


Q ss_pred             EEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855          193 LIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       193 ~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      .|++++|.+..          +|+.|++++|++.+..+. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            99999998753          899999999999876665 7788999999999999999999999999999999999999


Q ss_pred             eeeecCccccCCcccc
Q 044855          263 FSGSIPSCLGNVSFWR  278 (279)
Q Consensus       263 l~~~~p~~~~~~~~l~  278 (279)
                      +++.+|+. +.++.|+
T Consensus       280 l~~~ip~~-~~l~~L~  294 (313)
T 1ogq_A          280 LCGEIPQG-GNLQRFD  294 (313)
T ss_dssp             EEEECCCS-TTGGGSC
T ss_pred             ccccCCCC-ccccccC
Confidence            99999986 7776664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=5.9e-29  Score=216.99  Aligned_cols=101  Identities=28%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..|.+|+++++|++|++++|++++..|..|.++++|++|++++|.+. .++..   .+++|++|++++|..
T Consensus        27 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l  102 (520)
T 2z7x_B           27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAF  102 (520)
T ss_dssp             ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCC
T ss_pred             ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCcc
Confidence            35556666555556666666666666666666555556666666666666666555 22222   455666666655543


Q ss_pred             cccccCCCCCCCCceeEEEecCCcC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQL  105 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~  105 (279)
                      .....+..++.+++|++|++++|.+
T Consensus       103 ~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B          103 DALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             ccccchhhhccCCcceEEEecCccc
Confidence            2211223445555555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.1e-29  Score=221.02  Aligned_cols=107  Identities=19%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+.+..+.+|+++++|++|++++|.+++..+..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus        58 ~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l  136 (570)
T 2z63_A           58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI  136 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCcc
Confidence            57889999888889999999999999999998777788999999999999999887 34444578888999999988864


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVI  108 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~  108 (279)
                      .....+..+..+++|++|++++|.+..+
T Consensus       137 ~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          137 QSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ceecChhhhcccCCCCEEeCcCCcccee
Confidence            3322245577788888888888776443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=3.2e-28  Score=204.93  Aligned_cols=258  Identities=21%  Similarity=0.189  Sum_probs=208.9

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      +|++|.+....+.+|+.+++|++|++++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus        75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A           75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCcc
Confidence            57899999888889999999999999999999877888999999999999999987 55556678999999999998864


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCC--C--------cCcchhhccCcccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC--G--------KMDDGLRSSTSLEG  150 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~--------~~~~~~~~~~~L~~  150 (279)
                       ..++...+..+++|++|++++|.++.++  +..+++|+.+++++|.+.......  .        .........++|+.
T Consensus       154 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~  230 (390)
T 3o6n_A          154 -ERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI  230 (390)
T ss_dssp             -CBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred             -CccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence             4566667889999999999999987764  445677777777766554311100  0        00001122357888


Q ss_pred             eeccCC---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCC
Q 044855          151 LDISGN---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGR  218 (279)
Q Consensus       151 l~l~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~  218 (279)
                      |+++++   -...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..         +|+.|++++|++. .
T Consensus       231 L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~  309 (390)
T 3o6n_A          231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-H  309 (390)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-C
T ss_pred             EECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-e
Confidence            888877   23567788999999999999999888899999999999999998754         8999999999986 5


Q ss_pred             CchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855          219 IPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       219 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  266 (279)
                      ++..+..+++|+.|++++|++++. +  +..+++|+.|++++|+++..
T Consensus       310 ~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          310 VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            677788899999999999999854 3  66788999999999999854

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.4e-28  Score=201.40  Aligned_cols=264  Identities=20%  Similarity=0.215  Sum_probs=208.4

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.++ .+|..+  .+++++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|.. 
T Consensus        40 ~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l-  114 (332)
T 2ft3_A           40 CSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL-  114 (332)
T ss_dssp             CCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCC-
T ss_pred             CCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcC-
Confidence            5667777 455544  378999999999998777778999999999999999987 44457788999999999998864 


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW  160 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  160 (279)
                      ..++...+   ++|++|++++|.+..++. .+..+++|+.|++++|.+....    ..+..+..+ +|++++++++-...
T Consensus       115 ~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          115 VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG----FEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG----SCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC----CCcccccCC-ccCEEECcCCCCCc
Confidence            35554433   789999999999988876 4678999999999999875321    223344445 89999998873222


Q ss_pred             cc--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcC
Q 044855          161 IG--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSN  228 (279)
Q Consensus       161 ~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~  228 (279)
                      +.  ..++|+.|++++|.++...+..+..+++|+.|++++|.+..          +|+.|++++|++. .+|..+..+++
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence            21  12689999999999988777889999999999999998754          8999999999986 67878889999


Q ss_pred             CcEEEccCCcccccCChhhhc------ccCCcEEEccCCEee--eecCccccCCccccC
Q 044855          229 LHVLLLRGNSLQGHIPNELCQ------LAKLRIMDLSNNIFS--GSIPSCLGNVSFWRE  279 (279)
Q Consensus       229 L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~p~~~~~~~~l~~  279 (279)
                      |+.|++++|++++..+..+..      .+.++.|++++|++.  +..|..|..++.|+.
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~  324 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA  324 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence            999999999999777766655      367899999999987  667778888887763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=3.4e-29  Score=227.68  Aligned_cols=265  Identities=19%  Similarity=0.234  Sum_probs=218.1

Q ss_pred             CCCCCcCcC-----------------CCCcccc--CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCc-cc
Q 044855            1 DLSSNNFEG-----------------HLPQCLN--HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQG-TF   59 (279)
Q Consensus         1 ~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~   59 (279)
                      ||++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|..|.++++|++|++++|. +++ .+
T Consensus       454 ~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i  533 (876)
T 4ecn_A          454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL  533 (876)
T ss_dssp             EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH
T ss_pred             ECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccc
Confidence            467788887                 3888877  99999999999999999999999999999999999998 765 33


Q ss_pred             chhhhc-------ccccceeeeecCCcccccccC-CCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCccccc
Q 044855           60 SINSLA-------NHSKLEVLLLSSGSNMLQVKT-ESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGN  131 (279)
Q Consensus        60 ~~~~~~-------~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  131 (279)
                      + ..+.       .+++|++|++++|... .++. ..+..+++|++|++++|.+..+| .+..+++|+.|++++|.+.  
T Consensus       534 P-~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~--  608 (876)
T 4ecn_A          534 K-ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE--  608 (876)
T ss_dssp             H-HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--
T ss_pred             h-HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--
Confidence            3 3333       4559999999999755 5543 26789999999999999999899 8888999999999999887  


Q ss_pred             CCCCCcCcchhhccCc-ccceeccCC----CCccccCCC--CCcEEEccccEeeeecccc---cc--CCCCccEEeccCC
Q 044855          132 FPICGKMDDGLRSSTS-LEGLDISGN----IPNWIGNIS--TLRVLLMSKNYLEANIPVQ---LN--HLKSLELIDIFEN  199 (279)
Q Consensus       132 ~~~~~~~~~~~~~~~~-L~~l~l~~~----~~~~~~~~~--~L~~L~l~~~~l~~~~~~~---l~--~~~~L~~l~l~~~  199 (279)
                           .++..+..+++ |+.|++++|    +|..+...+  +|+.|++++|.+.+..|..   +.  .+++|+.|++++|
T Consensus       609 -----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          609 -----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             -----CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred             -----cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence                 34466888888 999999988    455555554  4999999999987744422   22  4458999999999


Q ss_pred             cCcc----------cceEEEeecCccCCCCchhhh--------cCcCCcEEEccCCcccccCChhhh--cccCCcEEEcc
Q 044855          200 SLSS----------KLITLDLRDNKFFGRIPYQIN--------ELSNLHVLLLRGNSLQGHIPNELC--QLAKLRIMDLS  259 (279)
Q Consensus       200 ~~~~----------~L~~L~l~~~~~~~~~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~  259 (279)
                      .+..          +|+.|++++|++. .+|..+.        ++++|+.|++++|+++ .+|..+.  .+++|+.|+++
T Consensus       684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          684 EIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS  761 (876)
T ss_dssp             CCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECC
T ss_pred             cCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeC
Confidence            8764          8999999999997 4554432        2349999999999999 7888887  89999999999


Q ss_pred             CCEeeeecCccccCCcccc
Q 044855          260 NNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       260 ~n~l~~~~p~~~~~~~~l~  278 (279)
                      +|.+++ +|..+..++.|+
T Consensus       762 ~N~L~~-lp~~l~~L~~L~  779 (876)
T 4ecn_A          762 YNCFSS-FPTQPLNSSQLK  779 (876)
T ss_dssp             SSCCSS-CCCGGGGCTTCC
T ss_pred             CCCCCc-cchhhhcCCCCC
Confidence            999996 899999988886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=4e-28  Score=218.21  Aligned_cols=275  Identities=20%  Similarity=0.240  Sum_probs=141.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+.+..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus        31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred             ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCcc
Confidence            35556666555555666666666666666655555555555556666666555554 33333445555555555554432


Q ss_pred             cccccCCCCCCCCceeEEEec------------------------CCcCcccChh---hhcCCCccEEEeeCCcccccCC
Q 044855           81 MLQVKTESWHPTSQLKVLKLS------------------------DCQLHVIPSF---LLQQDHLKFLDLSHNKLVGNFP  133 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~------------------------~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~  133 (279)
                       ..++...+..+++|++|+++                        +|.++.++..   ...+++|+.|++++|.+.+..+
T Consensus       110 -~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          110 -QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             -CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             -CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence             23333334444444444444                        4444333321   1123455555555554433222


Q ss_pred             CC---------------------------------------------CcCcchhhccC--cccceeccCC-----CCccc
Q 044855          134 IC---------------------------------------------GKMDDGLRSST--SLEGLDISGN-----IPNWI  161 (279)
Q Consensus       134 ~~---------------------------------------------~~~~~~~~~~~--~L~~l~l~~~-----~~~~~  161 (279)
                      ..                                             ...+..+..+.  +|+.|+++++     .+..+
T Consensus       189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~  268 (680)
T 1ziw_A          189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF  268 (680)
T ss_dssp             TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT
T ss_pred             hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc
Confidence            10                                             00011222232  3677777665     23456


Q ss_pred             cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc-------------------ccceEEEeecCccCCCCchh
Q 044855          162 GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS-------------------SKLITLDLRDNKFFGRIPYQ  222 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-------------------~~L~~L~l~~~~~~~~~~~~  222 (279)
                      +.+++|+.|++++|.+.+..+..+..+++|+.++++++...                   .+|+.|++++|.+.+..+..
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~  348 (680)
T 1ziw_A          269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM  348 (680)
T ss_dssp             TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred             cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence            66777777777777777666666666666666666543211                   15666666666666555555


Q ss_pred             hhcCcCCcEEEccCC----------------------------cccccCChhhhcccCCcEEEccCCEeeeecC-ccccC
Q 044855          223 INELSNLHVLLLRGN----------------------------SLQGHIPNELCQLAKLRIMDLSNNIFSGSIP-SCLGN  273 (279)
Q Consensus       223 ~~~~~~L~~L~l~~n----------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~  273 (279)
                      +..+++|+.|++++|                            ++++..+..+..+++|+.|++++|.+++.+| ..|..
T Consensus       349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  428 (680)
T 1ziw_A          349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG  428 (680)
T ss_dssp             TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred             hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence            555555544444433                            3333344445555556666666666555544 34444


Q ss_pred             Cccc
Q 044855          274 VSFW  277 (279)
Q Consensus       274 ~~~l  277 (279)
                      ++.|
T Consensus       429 l~~L  432 (680)
T 1ziw_A          429 LENI  432 (680)
T ss_dssp             CTTC
T ss_pred             cccc
Confidence            4444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.8e-28  Score=220.44  Aligned_cols=271  Identities=22%  Similarity=0.237  Sum_probs=154.7

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcc--------cchhhhccccccee
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGT--------FSINSLANHSKLEV   72 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~~~~~L~~   72 (279)
                      ||++|.+.+..+.+|+.+++|++|++++|.+++..+..|.++++|++|++++|...+.        +....+..+++|++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            4566777766667777777777777777777655555555555555555544321110        00112333444444


Q ss_pred             eeecCCcccccccCCCCCCCCceeEEE----------------------------ecCCcCccc-ChhhhcCCCccEEEe
Q 044855           73 LLLSSGSNMLQVKTESWHPTSQLKVLK----------------------------LSDCQLHVI-PSFLLQQDHLKFLDL  123 (279)
Q Consensus        73 L~l~~~~~~~~~~~~~~~~~~~L~~L~----------------------------l~~~~~~~~-~~~~~~~~~L~~L~l  123 (279)
                      |++++|.. .......+..+++|++|+                            +++|.+..+ +..+..+++|+.|++
T Consensus       334 L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  412 (680)
T 1ziw_A          334 LNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL  412 (680)
T ss_dssp             EECCSCCB-CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EECCCCcc-CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence            44444331 112222233333333333                            333333222 223444555555555


Q ss_pred             eCCcccccCCC-------------------CCcCcchhhccCcccceeccCC-------CCccccCCCCCcEEEccccEe
Q 044855          124 SHNKLVGNFPI-------------------CGKMDDGLRSSTSLEGLDISGN-------IPNWIGNISTLRVLLMSKNYL  177 (279)
Q Consensus       124 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~L~~l~l~~~-------~~~~~~~~~~L~~L~l~~~~l  177 (279)
                      ++|.+.+..+.                   ....+..+..+++|+.++++++       .|..+..+++|+.|++++|.+
T Consensus       413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI  492 (680)
T ss_dssp             CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred             CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence            55554322110                   0011233444556666666543       345566777788888888877


Q ss_pred             eeeccccccCCCCccEEeccCCcCc------------------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855          178 EANIPVQLNHLKSLELIDIFENSLS------------------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL  239 (279)
Q Consensus       178 ~~~~~~~l~~~~~L~~l~l~~~~~~------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (279)
                      +...+..+..+++|+.|++++|.+.                  .+|+.|++++|++....+..|..+++|+.|++++|++
T Consensus       493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  572 (680)
T 1ziw_A          493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL  572 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence            7766666777888888888777653                  2677888888877654445677778888888888888


Q ss_pred             cccCChhhhcccCCcEEEccCCEeeeecCcccc
Q 044855          240 QGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG  272 (279)
Q Consensus       240 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  272 (279)
                      ++..+..+..+++|+.|++++|.+++..|..+.
T Consensus       573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             CcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence            765666667778888888888887765555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=7e-29  Score=217.86  Aligned_cols=130  Identities=26%  Similarity=0.318  Sum_probs=81.9

Q ss_pred             hccCcccceeccCCCC--------ccccCCCCCcEEEccccEeeeecc--ccccCCCCccEEeccCCcCcc---------
Q 044855          143 RSSTSLEGLDISGNIP--------NWIGNISTLRVLLMSKNYLEANIP--VQLNHLKSLELIDIFENSLSS---------  203 (279)
Q Consensus       143 ~~~~~L~~l~l~~~~~--------~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~l~l~~~~~~~---------  203 (279)
                      ..+++|++|+++++-.        ..++.+++|+.|++++|.++...+  ..+..+++|+.|++++|.+..         
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  410 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE  410 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence            3567788888877621        124455666666666666544211  234455555555555554332         


Q ss_pred             ---------------------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855          204 ---------------------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       204 ---------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                                           +|+.|++++|++++.    +..+++|+.|++++|+++ .+|. ...+++|+.|++++|+
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~  484 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQ  484 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSC
T ss_pred             cccEEECCCCCcccccchhcCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCc
Confidence                                 444555555544332    236788889999998888 5554 3568889999999999


Q ss_pred             eeeecCccccCCcccc
Q 044855          263 FSGSIPSCLGNVSFWR  278 (279)
Q Consensus       263 l~~~~p~~~~~~~~l~  278 (279)
                      +++..|+.|..++.|+
T Consensus       485 l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          485 LKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             CCCCCTTGGGGCTTCC
T ss_pred             cCCcCHHHHhcCcccC
Confidence            9877777788887775

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.6e-27  Score=196.29  Aligned_cols=264  Identities=20%  Similarity=0.236  Sum_probs=207.2

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.+. .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|.. 
T Consensus        38 ~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l-  112 (330)
T 1xku_A           38 CSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL-  112 (330)
T ss_dssp             CTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCC-
T ss_pred             ecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcC-
Confidence            4556666 4454443  68999999999998766668999999999999999887 44456788899999999988864 


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW  160 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  160 (279)
                      ..++...+   ++|++|++++|.+..++. .+..+++|+.|++++|.+....    ..+..+..+++|++++++++-...
T Consensus       113 ~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          113 KELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----IENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----BCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC----cChhhccCCCCcCEEECCCCcccc
Confidence            34444332   789999999999987765 5678899999999998875321    334567889999999999873222


Q ss_pred             cc--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcC
Q 044855          161 IG--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSN  228 (279)
Q Consensus       161 ~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~  228 (279)
                      +.  ..++|+.|++++|.++...+..+..+++|+.|++++|.+..          +|+.|++++|++. .+|..+..+++
T Consensus       186 l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  264 (330)
T 1xku_A          186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY  264 (330)
T ss_dssp             CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred             CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence            21  13789999999999988778889999999999999998753          8999999999986 67778889999


Q ss_pred             CcEEEccCCcccccCChhhhc------ccCCcEEEccCCEeee--ecCccccCCcccc
Q 044855          229 LHVLLLRGNSLQGHIPNELCQ------LAKLRIMDLSNNIFSG--SIPSCLGNVSFWR  278 (279)
Q Consensus       229 L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~~--~~p~~~~~~~~l~  278 (279)
                      |+.|++++|++++..+..++.      .+.++.|++++|++..  ..|..|..++.|+
T Consensus       265 L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~  322 (330)
T 1xku_A          265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  322 (330)
T ss_dssp             CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             cCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence            999999999999776666654      3778999999999853  4556777777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.6e-28  Score=199.53  Aligned_cols=248  Identities=19%  Similarity=0.211  Sum_probs=204.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..+.+|+++++|++|++++|.+++..|..|..+++|++|++++|.+. ..+...   .++|++|++++|. 
T Consensus        58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~-  132 (330)
T 1xku_A           58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENE-  132 (330)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEECCSSC-
T ss_pred             ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEEECCCCc-
Confidence            57899999888889999999999999999999777899999999999999999887 333222   2789999999886 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCc---ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLH---VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-  156 (279)
                      ....+...+..+++|++|++++|.+.   ..+..+..+++|+.|++++|.+....       ..+  .++|++|+++++ 
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-------~~~--~~~L~~L~l~~n~  203 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-------QGL--PPSLTELHLDGNK  203 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-------SSC--CTTCSEEECTTSC
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-------ccc--cccCCEEECCCCc
Confidence            34555556788999999999999885   44567888999999999999886322       222  278999999987 


Q ss_pred             ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhh
Q 044855          157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQI  223 (279)
Q Consensus       157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~  223 (279)
                          .+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..         +|+.|++++|++.+..+..|
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence                35668889999999999999998777789999999999999998764         89999999999987766666


Q ss_pred             hc------CcCCcEEEccCCcccc--cCChhhhcccCCcEEEccCCE
Q 044855          224 NE------LSNLHVLLLRGNSLQG--HIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       224 ~~------~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      ..      .+.++.+++++|++..  ..+..+..+++++.+++++|+
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            43      4789999999999863  456788889999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=2.8e-28  Score=214.54  Aligned_cols=102  Identities=24%  Similarity=0.221  Sum_probs=63.9

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+.+..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. .++..   .+++|++|++++|..
T Consensus        58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l  133 (562)
T 3a79_B           58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDF  133 (562)
T ss_dssp             ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCC
T ss_pred             ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCc
Confidence            46667777666667777777777777777777666666777777777777777665 33322   566667777766653


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLH  106 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~  106 (279)
                      ..--....+..+++|++|++++|.+.
T Consensus       134 ~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          134 DVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             cccCchHhhcccCcccEEecCCCccc
Confidence            22111234566666666666666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=211.33  Aligned_cols=261  Identities=23%  Similarity=0.277  Sum_probs=186.1

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      |+++|.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+. ...+..+..+++|++|++++|..
T Consensus         6 ~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            6 DRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             ECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCC
T ss_pred             ecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCce
Confidence            58899999 5666555  89999999999999777788999999999999999997 45557889999999999999975


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcc--cceeccCC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSL--EGLDISGN  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~l~l~~~  156 (279)
                      . .++..   .+++|++|++++|.+..  +|..+..+++|++|++++|.+.+.         .+..+++|  +.++++++
T Consensus        82 ~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           82 V-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---------SVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             C-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---------GGGGGTTSCEEEEEEEEC
T ss_pred             e-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---------hccccccceeeEEEeecc
Confidence            4 55554   78999999999999965  568899999999999999887531         12222333  33333322


Q ss_pred             C-------Cccc--------------------------------------------------------cC----------
Q 044855          157 I-------PNWI--------------------------------------------------------GN----------  163 (279)
Q Consensus       157 ~-------~~~~--------------------------------------------------------~~----------  163 (279)
                      -       +..+                                                        +.          
T Consensus       149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~  228 (520)
T 2z7x_B          149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN  228 (520)
T ss_dssp             TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEE
T ss_pred             cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccc
Confidence            0       0111                                                        11          


Q ss_pred             -----------------CCCCcEEEccccEeeeeccccc-----cCCCCccEEeccCCc---------------------
Q 044855          164 -----------------ISTLRVLLMSKNYLEANIPVQL-----NHLKSLELIDIFENS---------------------  200 (279)
Q Consensus       164 -----------------~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~l~l~~~~---------------------  200 (279)
                                       .++|+.|++++|.+++..|..+     ..+++|+.++++.|.                     
T Consensus       229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEE
T ss_pred             ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEE
Confidence                             2267777777777775566555     555555555544433                     


Q ss_pred             -----Cc--------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccc--cCChhhhcccCCcEEEccCCEeee
Q 044855          201 -----LS--------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQG--HIPNELCQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       201 -----~~--------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~  265 (279)
                           +.        .+|++|++++|++.+..+..+..+++|+.|++++|++++  ..|..+..+++|+.|++++|.+++
T Consensus       309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY  388 (520)
T ss_dssp             EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred             cCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence                 21        167777777777777677777777888888888887775  345667777778888888888776


Q ss_pred             ecCcc-ccCCcccc
Q 044855          266 SIPSC-LGNVSFWR  278 (279)
Q Consensus       266 ~~p~~-~~~~~~l~  278 (279)
                      .+|.. +..++.|+
T Consensus       389 ~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          389 DEKKGDCSWTKSLL  402 (520)
T ss_dssp             CGGGCSCCCCTTCC
T ss_pred             ccccchhccCccCC
Confidence            56653 55555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=7.9e-28  Score=212.98  Aligned_cols=256  Identities=21%  Similarity=0.218  Sum_probs=210.6

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      +|++|.+.+..+.+|+.+++|++|+|++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|. 
T Consensus        81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~-  158 (597)
T 3oja_B           81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-  158 (597)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-
T ss_pred             ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCc-
Confidence            57899999888899999999999999999999888888999999999999999997 5565667899999999999886 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCC------------CcCcchhhccCcc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC------------GKMDDGLRSSTSL  148 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~~~~~L  148 (279)
                      +..++...+..+++|++|++++|.+..++  +..+++|+.|++++|.+.+.....            ..++.  ...++|
T Consensus       159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L  234 (597)
T 3oja_B          159 LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVEL  234 (597)
T ss_dssp             CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC--SCCSCC
T ss_pred             CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc--ccCCCC
Confidence            45566677899999999999999997765  345677777777776654311100            00001  113568


Q ss_pred             cceeccCC---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccC
Q 044855          149 EGLDISGN---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFF  216 (279)
Q Consensus       149 ~~l~l~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~  216 (279)
                      +.|+++++   -+..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+..         +|+.|++++|.+.
T Consensus       235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred             CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence            88888877   34567889999999999999999888899999999999999998754         8999999999997


Q ss_pred             CCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855          217 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       217 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  266 (279)
                       .+|..+..+++|+.|++++|.+++..   +..+++|+.|++++|++.+.
T Consensus       315 -~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          315 -HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             -CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             -ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence             57778889999999999999998543   56788999999999999854

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2.2e-27  Score=196.81  Aligned_cols=244  Identities=19%  Similarity=0.287  Sum_probs=175.1

Q ss_pred             ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855           13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT   92 (279)
Q Consensus        13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   92 (279)
                      ..+..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+. +  .+..+++|++|++++|... .+  ..+..+
T Consensus        38 ~~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~--~~~~l~~L~~L~L~~n~i~-~~--~~~~~l  109 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-S--PLSNLVKLTNLYIGTNKIT-DI--SALQNL  109 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCC-CC--GGGTTC
T ss_pred             ccchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-h--hhhcCCcCCEEEccCCccc-Cc--hHHcCC
Confidence            34568999999999999988 454 388999999999999988743 3  2889999999999998643 33  347889


Q ss_pred             CceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC--------------
Q 044855           93 SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP--------------  158 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--------------  158 (279)
                      ++|++|++++|.+..++. +..+++|+.|++++|......       ..+..+++|++++++++-.              
T Consensus       110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-------SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS  181 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccc-------cchhhCCCCcEEEecCCCcCCchhhccCCCCCE
Confidence            999999999999987766 677888888888888543221       2244444555555544411              


Q ss_pred             -----------ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc--------cceEEEeecCccCCCC
Q 044855          159 -----------NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRI  219 (279)
Q Consensus       159 -----------~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--------~L~~L~l~~~~~~~~~  219 (279)
                                 ..+..+++|+.+++++|.+....+  +..+++|+.|++++|.+..        +|+.|++++|.+.+. 
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-
Confidence                       113344455555555554444222  5566777777777776543        777888888877553 


Q ss_pred             chhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          220 PYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       220 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                       ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|+.++.++.|+
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence             4567788888888888888753  4577888888999999988877788888877775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.5e-29  Score=205.74  Aligned_cols=256  Identities=21%  Similarity=0.259  Sum_probs=179.7

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      .+++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|.. 
T Consensus        38 ~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l-  112 (353)
T 2z80_A           38 GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-  112 (353)
T ss_dssp             CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC-
T ss_pred             CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcC-
Confidence            4566666 4444443  47888888888877655557778888888888888776 34445677778888888877753 


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCc-ccccCCCCCcCcchhhccCcccceeccCC--
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNK-LVGNFPICGKMDDGLRSSTSLEGLDISGN--  156 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--  156 (279)
                      ..++...+..+++|++|++++|.+..++.  .+..+++|+.|++++|. +..      ..+..+..+++|++++++++  
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK------IQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE------ECTTTTTTCCEEEEEEEEETTC
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc------cCHHHccCCCCCCEEECCCCCc
Confidence            34444446777788888888887777765  56677888888888774 331      12345666777777777766  


Q ss_pred             ---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------------cceEEEeecCccCC---
Q 044855          157 ---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------------KLITLDLRDNKFFG---  217 (279)
Q Consensus       157 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------------~L~~L~l~~~~~~~---  217 (279)
                         .+..++.+++|+.|++++|.+.......+..+++|+.|++++|.+..             .++.++++++.+.+   
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l  266 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL  266 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence               35566777778888887777655333334456777777777776653             46667777776654   


Q ss_pred             -CCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecC
Q 044855          218 -RIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP  268 (279)
Q Consensus       218 -~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  268 (279)
                       .+|..+..+++|+.|++++|++++.....+..+++|+.|++++|++++..|
T Consensus       267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             245667889999999999999994444445889999999999999987665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=1.1e-28  Score=216.69  Aligned_cols=131  Identities=21%  Similarity=0.151  Sum_probs=106.4

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..|.+|+.+++|++|++++|++++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus        32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCC
T ss_pred             ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcc
Confidence            57889998888889999999999999999998777788999999999999999887 44556688899999999988865


Q ss_pred             cccccCCCCCCCCceeEEEecCCc-CcccC-hhhhcCCCccEEEeeCCcccccC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQ-LHVIP-SFLLQQDHLKFLDLSHNKLVGNF  132 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~  132 (279)
                      ........+..+++|++|++++|. +..++ ..+..+++|++|++++|.+.+..
T Consensus       111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A          111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence            432233467888899999999887 56665 46778888999999988876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=7.4e-28  Score=220.94  Aligned_cols=267  Identities=22%  Similarity=0.228  Sum_probs=190.9

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      .+++.++ .+|.   -.+++++|+|++|.+++..+..|.++++|++|++++|.....+....+.++++|++|++++|. +
T Consensus        11 cs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l   85 (844)
T 3j0a_A           11 YRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-I   85 (844)
T ss_dssp             ESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-C
T ss_pred             ccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-C
Confidence            3566777 4454   458899999999999988889999999999999999976667767889999999999999987 4


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcc-cChh--hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHV-IPSF--LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-  157 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-  157 (279)
                      ....+..+..+++|++|++++|.+.. ++..  +..+++|++|++++|.+.+..     ....+.++++|++|+++++. 
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSCC
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCcC
Confidence            45566788999999999999999864 4443  788999999999999886432     23568899999999999872 


Q ss_pred             ----CccccCC--CCCcEEEccccEeeeeccccccCC-------------------------------------------
Q 044855          158 ----PNWIGNI--STLRVLLMSKNYLEANIPVQLNHL-------------------------------------------  188 (279)
Q Consensus       158 ----~~~~~~~--~~L~~L~l~~~~l~~~~~~~l~~~-------------------------------------------  188 (279)
                          +..+..+  ++|+.|++++|.+....+..+..+                                           
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence                2333333  445555555554443333222222                                           


Q ss_pred             -------------------------CCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEE
Q 044855          189 -------------------------KSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLL  233 (279)
Q Consensus       189 -------------------------~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  233 (279)
                                               ++|+.|++++|.+..          +|+.|++++|++.+..+..+..+++|+.|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence                                     345555555554432          566666666666665566666667777777


Q ss_pred             ccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..|..++.|+
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  365 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ  365 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence            777776655566666677777777777777655555666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=6e-28  Score=198.98  Aligned_cols=247  Identities=19%  Similarity=0.180  Sum_probs=202.0

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+....+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. .++....   ++|++|++++|. 
T Consensus        60 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~-  134 (332)
T 2ft3_A           60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNR-  134 (332)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSC-
T ss_pred             ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCc-
Confidence            57899999888899999999999999999999887889999999999999999887 3332222   799999999886 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcc---cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHV---IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-  156 (279)
                      +..++...+..+++|++|++++|.++.   .+..+..+ +|+.|++++|.+....       ..+  .++|++|+++++ 
T Consensus       135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-------~~~--~~~L~~L~l~~n~  204 (332)
T 2ft3_A          135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP-------KDL--PETLNELHLDHNK  204 (332)
T ss_dssp             CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC-------SSS--CSSCSCCBCCSSC
T ss_pred             cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC-------ccc--cCCCCEEECCCCc
Confidence            446666678899999999999998853   34455555 8999999999887422       222  268999999987 


Q ss_pred             ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhh
Q 044855          157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQI  223 (279)
Q Consensus       157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~  223 (279)
                          .+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+..         +|+.|++++|++++..+..+
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence                23567889999999999999998777789999999999999998764         89999999999987666666


Q ss_pred             hc------CcCCcEEEccCCccc--ccCChhhhcccCCcEEEccCCE
Q 044855          224 NE------LSNLHVLLLRGNSLQ--GHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       224 ~~------~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      ..      .+.|+.+++++|++.  +..+..+..+++|+.+++++|+
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            44      467999999999987  5677888899999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.4e-27  Score=210.11  Aligned_cols=267  Identities=22%  Similarity=0.285  Sum_probs=175.9

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..|.+|+.+++|++|++++|.++ .+|..  .+++|++|++++|.+.+...+..+.++++|++|++++|..
T Consensus        82 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B           82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             ECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            57899999888999999999999999999998 56655  8999999999999987433346788899999999988764


Q ss_pred             cccccCCCCCCCCce--eEEEecCCcC--cc-cChhhhc-----------------------------------------
Q 044855           81 MLQVKTESWHPTSQL--KVLKLSDCQL--HV-IPSFLLQ-----------------------------------------  114 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~~~~~-----------------------------------------  114 (279)
                      ..    ..+..+++|  ++|++++|.+  .. .+..+..                                         
T Consensus       159 ~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  234 (562)
T 3a79_B          159 RQ----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN  234 (562)
T ss_dssp             CT----TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred             cc----CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence            32    223333444  7777666654  11 1111111                                         


Q ss_pred             ----------------------------------------CCCccEEEeeCCcccccCCCCC------------------
Q 044855          115 ----------------------------------------QDHLKFLDLSHNKLVGNFPICG------------------  136 (279)
Q Consensus       115 ----------------------------------------~~~L~~L~l~~~~~~~~~~~~~------------------  136 (279)
                                                              .++|++|++++|.+.+..|...                  
T Consensus       235 ~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~  314 (562)
T 3a79_B          235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN  314 (562)
T ss_dssp             HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred             cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence                                                    1256666666665553333110                  


Q ss_pred             ---cCc-c---h----------------------hhccCcccceeccCC-----CCccccCCCCCcEEEccccEeeee--
Q 044855          137 ---KMD-D---G----------------------LRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEAN--  180 (279)
Q Consensus       137 ---~~~-~---~----------------------~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~--  180 (279)
                         .++ .   .                      ...+++|++++++++     .+..++.+++|+.|++++|.+++.  
T Consensus       315 ~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  394 (562)
T 3a79_B          315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK  394 (562)
T ss_dssp             CCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH
T ss_pred             ceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc
Confidence               000 0   0                      045566777777665     345566677777777777776652  


Q ss_pred             ccccccCCCCccEEeccCCcCcc-----------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhc
Q 044855          181 IPVQLNHLKSLELIDIFENSLSS-----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQ  249 (279)
Q Consensus       181 ~~~~l~~~~~L~~l~l~~~~~~~-----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  249 (279)
                      .|..+..+++|+.|++++|.+..           +|+.|++++|++++..+..+.  ++|+.|++++|+++ .+|..+..
T Consensus       395 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~  471 (562)
T 3a79_B          395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH  471 (562)
T ss_dssp             HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred             chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence            23456677777777777776542           667777777776554433322  57788888888777 56666667


Q ss_pred             ccCCcEEEccCCEeeeecCcc-ccCCcccc
Q 044855          250 LAKLRIMDLSNNIFSGSIPSC-LGNVSFWR  278 (279)
Q Consensus       250 ~~~L~~L~l~~n~l~~~~p~~-~~~~~~l~  278 (279)
                      +++|+.|++++|.++ .+|.. +..++.|+
T Consensus       472 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  500 (562)
T 3a79_B          472 LQALQELNVASNQLK-SVPDGVFDRLTSLQ  500 (562)
T ss_dssp             SCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred             CCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence            788888888888887 66665 77776665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=8.5e-27  Score=200.63  Aligned_cols=261  Identities=26%  Similarity=0.307  Sum_probs=142.5

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+.+..+  +.++++|++|++++|.+.+..+  +.++++|++|++++|.+.+. +  .+..+++|++|++++|..
T Consensus        74 ~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~~n~l  146 (466)
T 1o6v_A           74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-D--PLKNLTNLNRLELSSNTI  146 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCSEEEEEEEEE
T ss_pred             ECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-h--HHcCCCCCCEEECCCCcc
Confidence            355555554433  5566666666666666553322  55666666666666655422 1  255555566665555432


Q ss_pred             ccccc-------------------CCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCC------
Q 044855           81 MLQVK-------------------TESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC------  135 (279)
Q Consensus        81 ~~~~~-------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------  135 (279)
                      .. .+                   ...+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+..+..      
T Consensus       147 ~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  224 (466)
T 1o6v_A          147 SD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLD  224 (466)
T ss_dssp             CC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCC
T ss_pred             CC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCC
Confidence            11 10                   011344556666666666555443 2455566666666665544221100      


Q ss_pred             --------CcCcchhhccCcccceeccCCCC---ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-
Q 044855          136 --------GKMDDGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-  203 (279)
Q Consensus       136 --------~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-  203 (279)
                              -.....+..+++|+.|+++++-.   ..+..+++|+.|++++|.++...+  +..+++|+.|++++|.+.. 
T Consensus       225 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  302 (466)
T 1o6v_A          225 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI  302 (466)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC
T ss_pred             EEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc
Confidence                    00002334444555555554411   114455556666666665554222  5566666666666665543 


Q ss_pred             -------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcc
Q 044855          204 -------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF  276 (279)
Q Consensus       204 -------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  276 (279)
                             +|+.|++++|++.+..+  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..++.
T Consensus       303 ~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~  376 (466)
T 1o6v_A          303 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTR  376 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred             hhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence                   66777777777665443  55677777777777777643  456677788888888888876655  666666


Q ss_pred             cc
Q 044855          277 WR  278 (279)
Q Consensus       277 l~  278 (279)
                      |+
T Consensus       377 L~  378 (466)
T 1o6v_A          377 IT  378 (466)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.2e-27  Score=195.08  Aligned_cols=221  Identities=19%  Similarity=0.260  Sum_probs=131.6

Q ss_pred             CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE
Q 044855           18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV   97 (279)
Q Consensus        18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   97 (279)
                      .++++.|+++++.++ .+|..+..+++|++|++++|.+. .++ ..+..+++|++|++++|... .++ ..+..+++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALP-ASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCC-CCC-GGGGGCTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccc-cCc-HHHhcCcCCCE
Confidence            366677777777766 55666666777777777777665 332 45566677777777666543 332 34566677777


Q ss_pred             EEecCCcC-cccChhhhc---------CCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccC
Q 044855           98 LKLSDCQL-HVIPSFLLQ---------QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGN  163 (279)
Q Consensus        98 L~l~~~~~-~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~  163 (279)
                      |++++|.. ..+|..+..         +++|+.|++++|.+.       .++..+..+++|++|++++|    ++..++.
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------SLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-------cchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            77776543 555554433         677777777776654       22233344444444444433    3344555


Q ss_pred             CCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855          164 ISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI  243 (279)
Q Consensus       164 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (279)
                      +++|+.|++++|.+.+..|..+..+++|+.|+              +++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~--------------L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLI--------------LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE--------------CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEE--------------CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            56666666666655555555555555554433              3334444566666677777777777777776677


Q ss_pred             ChhhhcccCCcEEEccCCEee
Q 044855          244 PNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       244 ~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      |..+..+++++.+++..+.+.
T Consensus       294 P~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CGGGGGSCTTCEEECCGGGSC
T ss_pred             cHHHhhccCceEEeCCHHHHH
Confidence            777777777777776665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.1e-26  Score=199.87  Aligned_cols=244  Identities=28%  Similarity=0.376  Sum_probs=167.1

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccc------------------hhh
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS------------------INS   63 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------~~~   63 (279)
                      +++|.+.+..+  ++++++|++|++++|.+++. +. +..+++|++|++++|.+.+...                  ...
T Consensus        97 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~  172 (466)
T 1o6v_A           97 MNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP  172 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG
T ss_pred             CCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchh
Confidence            55666664443  66677777777776666632 22 5566666666666665442110                  012


Q ss_pred             hcccccceeeeecCCcccccccC--------------------CCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEe
Q 044855           64 LANHSKLEVLLLSSGSNMLQVKT--------------------ESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDL  123 (279)
Q Consensus        64 ~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  123 (279)
                      +..+++|+.|++++|... ....                    ..+..+++|++|++++|.+..++ .+..+++|+.|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l  250 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL  250 (466)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred             hccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEEC
Confidence            344455555555554321 1110                    00234455555555555554442 3455666777777


Q ss_pred             eCCcccccCCCCCcCcchhhccCcccceeccCCCC---ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc
Q 044855          124 SHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS  200 (279)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~  200 (279)
                      ++|.+.+.        ..+..+++|+.|+++++-.   ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.
T Consensus       251 ~~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          251 ANNQISNL--------APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CSSCCCCC--------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred             CCCccccc--------hhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence            76665421        1277889999999998832   236788999999999999987443  7899999999999998


Q ss_pred             Ccc--------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855          201 LSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       201 ~~~--------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  265 (279)
                      +..        +|+.|++++|++.+.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       321 l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          321 ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            865        899999999999765  467899999999999999997766  7899999999999999995

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.3e-26  Score=198.65  Aligned_cols=225  Identities=19%  Similarity=0.197  Sum_probs=164.5

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      +++++|+|++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|. +..++...+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence            57888888888888777777888888888888888776 4455677778888888887775 446666667778888888


Q ss_pred             EecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC---ccccCCCCCcEEEccc
Q 044855           99 KLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSK  174 (279)
Q Consensus        99 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~  174 (279)
                      ++++|.++.++. .+..+++|+.|+++++...+..     ....+..+++|++|+++++-.   ..+..+++|+.|++++
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG  227 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----ChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence            888888877665 5667788888888875433221     123466677777777776622   2345667777777777


Q ss_pred             cEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCc
Q 044855          175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLR  254 (279)
Q Consensus       175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  254 (279)
                      |.+++..+..+..+++|+.|++++              |++.+..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus       228 N~l~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          228 NHFPEIRPGSFHGLSSLKKLWVMN--------------SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             SCCSEECGGGGTTCTTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             CcCcccCcccccCccCCCEEEeCC--------------CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            777776666677776666555554              445455677788889999999999999877777788889999


Q ss_pred             EEEccCCEee
Q 044855          255 IMDLSNNIFS  264 (279)
Q Consensus       255 ~L~l~~n~l~  264 (279)
                      .|++++|++.
T Consensus       294 ~L~L~~Np~~  303 (452)
T 3zyi_A          294 ELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcC
Confidence            9999999887

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=197.22  Aligned_cols=237  Identities=21%  Similarity=0.237  Sum_probs=174.2

Q ss_pred             CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855            4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ   83 (279)
Q Consensus         4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   83 (279)
                      +..++ .+|..+.  ++++.|+|++|.++...+..|.++++|++|++++|.+. .+....+..+++|++|++++|. +..
T Consensus        52 ~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~-l~~  126 (440)
T 3zyj_A           52 RKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR-LTT  126 (440)
T ss_dssp             SCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSC-CSS
T ss_pred             CCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCc-CCe
Confidence            34444 4444443  67888888888888777778888888888888888886 4555677888888888888875 456


Q ss_pred             ccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC---c
Q 044855           84 VKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---N  159 (279)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~  159 (279)
                      ++...+..+++|++|++++|.+..++. .+..+++|+.|+++++......     ....+..+++|++|+++++-.   .
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-----SEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----CTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-----CcchhhcccccCeecCCCCcCcccc
Confidence            666677888888888888888877765 5667888888888875433221     123566677788888877622   2


Q ss_pred             cccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855          160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL  239 (279)
Q Consensus       160 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (279)
                      .+..+++|+.|++++|.++...+..+..+++|+.|++++|              ++.+..+..|..+++|+.|++++|++
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS--------------QIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--------------CCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC--------------ceeEEChhhhcCCCCCCEEECCCCCC
Confidence            3556677888888888777766777777776665555554              44455666778888999999999998


Q ss_pred             cccCChhhhcccCCcEEEccCCEee
Q 044855          240 QGHIPNELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       240 ~~~~~~~~~~~~~L~~L~l~~n~l~  264 (279)
                      ++..+..+..+++|+.|++++|++.
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhHhccccCCCEEEcCCCCcc
Confidence            8777777888889999999999886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5e-27  Score=192.92  Aligned_cols=219  Identities=20%  Similarity=0.280  Sum_probs=168.4

Q ss_pred             CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccE
Q 044855           41 NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF  120 (279)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  120 (279)
                      ..+++++|++++|.+. .++ ..+..+++|++|++++|... .++ ..+..+++|++|++++|.+..+|..+..+++|+.
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred             cccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence            3589999999999987 444 45777999999999998754 444 5678899999999999999999999999999999


Q ss_pred             EEeeCCcccccCCCCC---cCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccE
Q 044855          121 LDLSHNKLVGNFPICG---KMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLEL  193 (279)
Q Consensus       121 L~l~~~~~~~~~~~~~---~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  193 (279)
                      |++++|...+..|...   .....+..+++|+.|+++++    +|..++.+++|+.|++++|.+++ .|..+..+++   
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~---  230 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK---  230 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT---
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC---
Confidence            9999987665443110   01112334566666666544    34455556666666666666554 3444555554   


Q ss_pred             EeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855          194 IDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN  273 (279)
Q Consensus       194 l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  273 (279)
                                 |+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.++.
T Consensus       231 -----------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          231 -----------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             -----------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             -----------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence                       445666666666788889999999999999999999899999999999999999999999999999999


Q ss_pred             Ccccc
Q 044855          274 VSFWR  278 (279)
Q Consensus       274 ~~~l~  278 (279)
                      ++.|+
T Consensus       300 L~~L~  304 (328)
T 4fcg_A          300 LPANC  304 (328)
T ss_dssp             SCTTC
T ss_pred             ccCce
Confidence            99876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.8e-26  Score=188.03  Aligned_cols=239  Identities=23%  Similarity=0.306  Sum_probs=167.0

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccc-hhhhcccccceeeeecCCcc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS-INSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~   80 (279)
                      .+++.++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+..... ...+..+++|++|++++|..
T Consensus        14 c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i   90 (306)
T 2z66_A           14 CNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV   90 (306)
T ss_dssp             CCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred             cCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence            3455666 4454332  689999999999985444567899999999999998863211 24556788999999988864


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--  156 (279)
                      . .++. .+..+++|++|++++|.+..++.  .+..+++|+.|++++|.+....      +..+..+++|++|+++++  
T Consensus        91 ~-~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           91 I-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF------NGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             E-EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS------TTTTTTCTTCCEEECTTCEE
T ss_pred             c-cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc------hhhcccCcCCCEEECCCCcc
Confidence            3 3332 36778999999999998877764  6778899999999998876332      345667788888888776  


Q ss_pred             ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEE
Q 044855          157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL  232 (279)
Q Consensus       157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  232 (279)
                          .+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.              +..+..+..+++|+.|
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--------------SLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--------------BCCSGGGTTCTTCCEE
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--------------ccChhhccCcccCCEe
Confidence                3556777888888888888888766777777777777666666543              3333345555666666


Q ss_pred             EccCCcccccCChhhhccc-CCcEEEccCCEeee
Q 044855          233 LLRGNSLQGHIPNELCQLA-KLRIMDLSNNIFSG  265 (279)
Q Consensus       233 ~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~  265 (279)
                      ++++|++++..+..+..++ +|+.|++++|++++
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            6666666555555555553 56666666666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=7.3e-26  Score=182.60  Aligned_cols=247  Identities=21%  Similarity=0.239  Sum_probs=157.6

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      .+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+. ......+..+++|++|++++|...
T Consensus        18 c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           18 CPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTC
T ss_pred             cCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCc
Confidence            3455565 344333  468899999999888766677888999999999998887 444567788888999999888656


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---  157 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---  157 (279)
                      ..+....+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....      ...+..+++|++|+++++-   
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP------DDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCE
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC------HhHhccCCCccEEECCCCcccc
Confidence            666667778888899999988888666 456677888999999888776322      1234455555555555541   


Q ss_pred             --CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855          158 --PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR  235 (279)
Q Consensus       158 --~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  235 (279)
                        +..+..+++|+.|++++|.+++..+..+..+++|+.              |++++|++.+..+..+..+++|+.|+++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT--------------LYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE--------------EECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccE--------------eeCCCCcCCcCCHHHcccCcccCEEecc
Confidence              123444555555555555555544555555544443              3444444444444556667777777777


Q ss_pred             CCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855          236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN  273 (279)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  273 (279)
                      +|++....+.. .....++.+....+.+....|+.+..
T Consensus       234 ~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          234 DNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             SSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             CCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence            77765332211 11122444445566666666665544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1e-27  Score=196.28  Aligned_cols=242  Identities=22%  Similarity=0.207  Sum_probs=154.1

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.+...+...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..   .+..+++|++|++++|...
T Consensus        17 ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             CCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEEE
T ss_pred             ccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCccc
Confidence            4455555444555667778888888888888666677888888888888888876433   2777788888888877532


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI----  157 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----  157 (279)
                       .++     ..++|++|++++|.+..++..  .+++|+.|++++|.+....      +..+..+++|++|+++++-    
T Consensus        94 -~l~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           94 -ELL-----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             -EEE-----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGG------GBCTGGGSSEEEEECTTSCCCEE
T ss_pred             -ccc-----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCcc------chhhhccCCCCEEECCCCCCCcc
Confidence             222     237888888888887666532  3577888888888776321      2344555666666666552    


Q ss_pred             -Cccc-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855          158 -PNWI-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR  235 (279)
Q Consensus       158 -~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  235 (279)
                       +..+ ..+++|++|++++|.++.. +. ...+++|              +.|++++|++.+ ++..+..+++|+.|+++
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L--------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~  222 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKL--------------KTLDLSSNKLAF-MGPEFQSAAGVTWISLR  222 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTC--------------CEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccC--------------CEEECCCCcCCc-chhhhcccCcccEEECc
Confidence             1122 2455666666666665553 11 1224444              455555555543 33346667777777777


Q ss_pred             CCcccccCChhhhcccCCcEEEccCCEee-eecCccccCCcccc
Q 044855          236 GNSLQGHIPNELCQLAKLRIMDLSNNIFS-GSIPSCLGNVSFWR  278 (279)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~l~  278 (279)
                      +|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+
T Consensus       223 ~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             TSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             CCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            77777 45666667777777777777776 56666666655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.1e-25  Score=184.31  Aligned_cols=253  Identities=19%  Similarity=0.199  Sum_probs=208.5

Q ss_pred             ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855           15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ   94 (279)
Q Consensus        15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~   94 (279)
                      -..|+.....+.+++.++ .+|..+.  ++|++|++++|.+. ..+...+..+++|++|++++|. +..+....+..+++
T Consensus        27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  101 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGS  101 (353)
T ss_dssp             CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred             CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCC
Confidence            345777778899999888 6776554  59999999999997 5565678999999999999886 45566677899999


Q ss_pred             eeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------CCccccCCCCC
Q 044855           95 LKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTL  167 (279)
Q Consensus        95 L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------~~~~~~~~~~L  167 (279)
                      |++|++++|.++.++.. +..+++|++|++++|.+.....     ...+..+++|++|+++++      .+..++.+++|
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  176 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL  176 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc-----hhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence            99999999999988876 7789999999999998862211     136778999999999986      24567889999


Q ss_pred             cEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhh---hcCcCCcEEEc
Q 044855          168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQI---NELSNLHVLLL  234 (279)
Q Consensus       168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l  234 (279)
                      +.|++++|.+++..+..+..+++|+.|++++|.+..          +|+.|++++|++.+..+..+   ...+.++.+++
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence            999999999998888899999999999999998754          89999999999977554433   34677889999


Q ss_pred             cCCccccc----CChhhhcccCCcEEEccCCEeeeecCcc-ccCCcccc
Q 044855          235 RGNSLQGH----IPNELCQLAKLRIMDLSNNIFSGSIPSC-LGNVSFWR  278 (279)
Q Consensus       235 ~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~l~  278 (279)
                      +++.+.+.    +|..+..+++|+.|++++|.++ .+|+. |+.++.|+
T Consensus       257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~  304 (353)
T 2z80_A          257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQ  304 (353)
T ss_dssp             ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCC
Confidence            99988753    6677889999999999999999 77765 58888876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=3.3e-25  Score=189.75  Aligned_cols=205  Identities=22%  Similarity=0.227  Sum_probs=110.4

Q ss_pred             CCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCC
Q 044855           11 LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWH   90 (279)
Q Consensus        11 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   90 (279)
                      .+..++++++|++|++++|.+++ .| .+..+++|++|++++|.+.+.    .+..+++|++|++++|.... ++   +.
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~-~~---~~  103 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTN-LD---VT  103 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC---CT
T ss_pred             cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCce-ee---cC
Confidence            33445556666666666666653 33 455666666666666665532    15555666666666654322 21   45


Q ss_pred             CCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-CCc--cccCCCCC
Q 044855           91 PTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-IPN--WIGNISTL  167 (279)
Q Consensus        91 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~--~~~~~~~L  167 (279)
                      .+++|++|++++|.++.++  +..+++|++|++++|.+.+.         .+..+++|++++++++ ...  .++.+++|
T Consensus       104 ~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l---------~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L  172 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI---------DVSHNTQLTELDCHLNKKITKLDVTPQTQL  172 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC---------CCTTCTTCCEEECTTCSCCCCCCCTTCTTC
T ss_pred             CCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee---------ccccCCcCCEEECCCCCcccccccccCCcC
Confidence            5666666666666665554  45556666666666655421         1344555555555554 111  23445555


Q ss_pred             cEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855          168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ  240 (279)
Q Consensus       168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (279)
                      +.|++++|.+++ .+  +..+++|+.|++++|.+..       +|+.|++++|++.+ +|  +..+++|+.|++++|+++
T Consensus       173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             CEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence            666666555554 22  4455555555555555442       55555555555544 23  445555555555555555


Q ss_pred             cc
Q 044855          241 GH  242 (279)
Q Consensus       241 ~~  242 (279)
                      +.
T Consensus       247 ~~  248 (457)
T 3bz5_A          247 EL  248 (457)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=7.7e-26  Score=184.29  Aligned_cols=256  Identities=22%  Similarity=0.216  Sum_probs=198.5

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCccccc--CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCC
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN--FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG   78 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   78 (279)
                      +|++|.++...+..|+++++|++|++++|.++..  .+..+..+++|++|++++|.+. ..+ ..+..+++|++|++++|
T Consensus        34 ~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~-~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEE-EEEETCTTCCEEECTTS
T ss_pred             ECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cCh-hhcCCCCCCCEEECCCC
Confidence            4789999977777899999999999999998732  3566778999999999999887 333 34788999999999998


Q ss_pred             cccccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-
Q 044855           79 SNMLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-  156 (279)
Q Consensus        79 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-  156 (279)
                      ..........+..+++|++|++++|.+... +..+..+++|++|++++|.+.+.     ..+..+..+++|++|+++++ 
T Consensus       112 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----FLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-----EECSCCTTCTTCCEEECTTSC
T ss_pred             cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-----cchhHHhhCcCCCEEECCCCC
Confidence            754333336788999999999999998544 55677899999999999988631     23466788999999999988 


Q ss_pred             ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCc-CCcE
Q 044855          157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELS-NLHV  231 (279)
Q Consensus       157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~  231 (279)
                          .+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|              ++.+..+..+..++ +|+.
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~~~~~L~~  252 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN--------------HIMTSKKQELQHFPSSLAF  252 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS--------------CCCBCSSSSCCCCCTTCCE
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC--------------CCcccCHHHHHhhhccCCE
Confidence                3566788999999999999998866667777777776555554              45556677777775 8999


Q ss_pred             EEccCCcccccCC--hhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855          232 LLLRGNSLQGHIP--NELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW  277 (279)
Q Consensus       232 L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l  277 (279)
                      |++++|+++....  .....+...+.+.+..+.+....|+.+...+.+
T Consensus       253 L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~  300 (306)
T 2z66_A          253 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL  300 (306)
T ss_dssp             EECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGG
T ss_pred             EEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceee
Confidence            9999999975422  112223345556677788888889888776654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=3.8e-25  Score=189.39  Aligned_cols=247  Identities=22%  Similarity=0.214  Sum_probs=153.6

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      |+++|.+++. | +++.+++|++|++++|.+++ ++  +..+++|++|++++|.+.+.    .+..+++|++|++++|..
T Consensus        48 ~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~N~l  118 (457)
T 3bz5_A           48 DCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKL  118 (457)
T ss_dssp             ECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC----CCTTCTTCCEEECCSSCC
T ss_pred             EccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee----ecCCCCcCCEEECCCCcC
Confidence            5788888865 4 68999999999999999885 33  78899999999999988743    277888999999988864


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc-
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN-  159 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-  159 (279)
                      . .++   +..+++|++|++++|.++.++  +..+++|++|++++|...+..        .+..+++|+.|+++++-.. 
T Consensus       119 ~-~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          119 T-KLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--------DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             S-CCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--------CCTTCTTCCEEECCSSCCCC
T ss_pred             C-eec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--------ccccCCcCCEEECCCCccce
Confidence            3 232   677888999999888887664  566777777777776432211        2334455555555544111 


Q ss_pred             ----------------------cccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------cceE---
Q 044855          160 ----------------------WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------KLIT---  207 (279)
Q Consensus       160 ----------------------~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~---  207 (279)
                                            .++.+++|+.|++++|.+++ .|  +..+++|+.|++++|.+..       +|+.   
T Consensus       185 l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l  261 (457)
T 3bz5_A          185 LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC  261 (457)
T ss_dssp             CCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred             eccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence                                  13344455555555555544 22  4445555555555554432       2222   


Q ss_pred             -------EEeecCccCCCCchhhhcCcCCcEEEccCCcccccCCh--------hhhcccCCcEEEccCCEeeeecCcccc
Q 044855          208 -------LDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN--------ELCQLAKLRIMDLSNNIFSGSIPSCLG  272 (279)
Q Consensus       208 -------L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~p~~~~  272 (279)
                             +++++|...+.+|  +..+++|+.|++++|...+.+|.        .+..+++|+.|++++|.+++ ++  ++
T Consensus       262 ~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~  336 (457)
T 3bz5_A          262 IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VS  336 (457)
T ss_dssp             TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CT
T ss_pred             cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cc
Confidence                   2222222222222  23456677777777764433332        24456778888888888875 33  66


Q ss_pred             CCcccc
Q 044855          273 NVSFWR  278 (279)
Q Consensus       273 ~~~~l~  278 (279)
                      .++.|+
T Consensus       337 ~l~~L~  342 (457)
T 3bz5_A          337 HNTKLK  342 (457)
T ss_dssp             TCTTCS
T ss_pred             cCCcCc
Confidence            666664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.6e-26  Score=198.24  Aligned_cols=226  Identities=24%  Similarity=0.205  Sum_probs=154.2

Q ss_pred             CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCcee
Q 044855           17 HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLK   96 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   96 (279)
                      .+++|++|+|++|.+++..|..|..+++|++|++++|.+.+..+   +..+++|++|++++|... .++     ..++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-ELL-----VGPSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEE-EEE-----ECTTCC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCC-CCC-----CCCCcC
Confidence            44589999999998887777788889999999999988864332   777888888888887532 222     237888


Q ss_pred             EEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-----Ccccc-CCCCCcEE
Q 044855           97 VLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-----PNWIG-NISTLRVL  170 (279)
Q Consensus        97 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-----~~~~~-~~~~L~~L  170 (279)
                      +|++++|.+..++..  .+++|+.|++++|.+.+..      +..+..+++|+.|++++|-     +..+. .+++|+.|
T Consensus       103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A          103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGG------GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCC------chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence            888888888666542  4578888888888776322      2344445555555555541     22222 44555555


Q ss_pred             EccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcc
Q 044855          171 LMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL  250 (279)
Q Consensus       171 ~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  250 (279)
                      ++++|.+++..+  ...++              +|+.|++++|.+++. +..+..+++|+.|++++|.++ .+|..+..+
T Consensus       175 ~Ls~N~l~~~~~--~~~l~--------------~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l  236 (487)
T 3oja_A          175 NLQYNFIYDVKG--QVVFA--------------KLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (487)
T ss_dssp             ECTTSCCCEEEC--CCCCT--------------TCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             ecCCCccccccc--cccCC--------------CCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence            555555544211  11233              555666666666543 445778899999999999998 467778888


Q ss_pred             cCCcEEEccCCEee-eecCccccCCccc
Q 044855          251 AKLRIMDLSNNIFS-GSIPSCLGNVSFW  277 (279)
Q Consensus       251 ~~L~~L~l~~n~l~-~~~p~~~~~~~~l  277 (279)
                      ++|+.|++++|+++ +.+|..+..++.|
T Consensus       237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             TTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             CCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            99999999999987 6666667666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=3.3e-25  Score=178.74  Aligned_cols=238  Identities=20%  Similarity=0.228  Sum_probs=187.2

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      +|++|.++...+.+|+.+++|++|++++|.+++..+..|..+++|++|++++|. +. ......+..+++|++|++++|.
T Consensus        38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~  116 (285)
T 1ozn_A           38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCG  116 (285)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCc
Confidence            478999998888999999999999999999997778899999999999999997 55 5556778899999999999886


Q ss_pred             ccccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--
Q 044855           80 NMLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--  156 (279)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--  156 (279)
                      . ...+...+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+..      ...+..+++|+.|+++++  
T Consensus       117 l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          117 L-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCC
T ss_pred             C-CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC------HHHhcCccccCEEECCCCcc
Confidence            4 45556778899999999999999988875 4778999999999999887332      245778999999999988  


Q ss_pred             ---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEE
Q 044855          157 ---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLL  233 (279)
Q Consensus       157 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  233 (279)
                         .+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.              ...+.. .-...++.+.
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------c~~~~~-~~~~~l~~~~  254 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV--------------CDCRAR-PLWAWLQKFR  254 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE--------------CSGGGH-HHHHHHHHCC
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc--------------CCCCcH-HHHHHHHhcc
Confidence               3667888999999999999999866667888888887777777643              111110 0112234445


Q ss_pred             ccCCcccccCChhhhc--ccCCcEEEccCC
Q 044855          234 LRGNSLQGHIPNELCQ--LAKLRIMDLSNN  261 (279)
Q Consensus       234 l~~n~~~~~~~~~~~~--~~~L~~L~l~~n  261 (279)
                      ...+.+....|..+.+  +..+...++.+|
T Consensus       255 ~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          255 GSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             SEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             cccCccccCCchHhCCcChhhcCHHHhccC
Confidence            6667776667776654  455666666666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.5e-24  Score=185.93  Aligned_cols=231  Identities=23%  Similarity=0.266  Sum_probs=179.5

Q ss_pred             ccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEe
Q 044855           21 LKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKL  100 (279)
Q Consensus        21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  100 (279)
                      .+.++.++..++ .+|..+.  +++++|++++|.+. ......+..+++|+.|++++|. +..++...|..+++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEEC
Confidence            467777777777 5666543  68999999999987 4555778899999999999886 45666677889999999999


Q ss_pred             cCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----C-CccccCCCCCcEEEcc
Q 044855          101 SDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----I-PNWIGNISTLRVLLMS  173 (279)
Q Consensus       101 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~-~~~~~~~~~L~~L~l~  173 (279)
                      ++|.+..++.. +..+++|++|++++|.+....      ...+..+++|+.|+++++     + +..+..+++|+.|+++
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeC------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence            99999888764 667899999999999876322      245667777777777763     1 2345667777777777


Q ss_pred             ccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCC
Q 044855          174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKL  253 (279)
Q Consensus       174 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  253 (279)
                      +|.++. .+ .+..+++              |+.|++++|++.+..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus       205 ~n~l~~-~~-~~~~l~~--------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          205 MCNIKD-MP-NLTPLVG--------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             TSCCSS-CC-CCTTCTT--------------CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCcccc-cc-ccccccc--------------ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            777665 22 3444444              4456666666666778889999999999999999998889999999999


Q ss_pred             cEEEccCCEeeeecCccccCCcccc
Q 044855          254 RIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       254 ~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      +.|++++|.+++..++.|..++.|+
T Consensus       269 ~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          269 VELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             CEEECCCCcCCccChHHhccccCCC
Confidence            9999999999966667788888775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=1.2e-24  Score=193.82  Aligned_cols=125  Identities=26%  Similarity=0.375  Sum_probs=104.9

Q ss_pred             hhccCcccceeccCC-----CCccccCCCCCcEEEccccEee-eeccccccCCCCccEEeccCCcCcc----------cc
Q 044855          142 LRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLE-ANIPVQLNHLKSLELIDIFENSLSS----------KL  205 (279)
Q Consensus       142 ~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~l~l~~~~~~~----------~L  205 (279)
                      +..+.+++.++++.+     .+..+..++.++.|++++|... ...|..+..+++|+.|++++|.+..          +|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            344455566666655     3455677899999999999754 4567789999999999999998764          89


Q ss_pred             eEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcc-cCCcEEEccCCEeeee
Q 044855          206 ITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL-AKLRIMDLSNNIFSGS  266 (279)
Q Consensus       206 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~  266 (279)
                      +.|++++|++.+..+..+..+++|+.|++++|++++..+..+..+ ++|+.|++++|+++..
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            999999999988888889999999999999999998889999888 6899999999999843

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=184.78  Aligned_cols=232  Identities=23%  Similarity=0.266  Sum_probs=178.3

Q ss_pred             CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855           20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK   99 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   99 (279)
                      ..+.++..+..++ .+|..+.  +++++|++++|.+. ......+..+++|++|++++|. +..+....|..+++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEE
Confidence            3567777777777 6666553  68999999999887 5555778889999999998886 4556667788899999999


Q ss_pred             ecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------CCccccCCCCCcEEEc
Q 044855          100 LSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLRVLLM  172 (279)
Q Consensus       100 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------~~~~~~~~~~L~~L~l  172 (279)
                      +++|.++.++. .+..+++|++|++++|.+....      ...+..+++|+.|+++++      .+..+..+++|+.|++
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L  192 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL  192 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccC------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence            99999988876 5778899999999998876322      245666777777777763      1234666777777777


Q ss_pred             cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC
Q 044855          173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK  252 (279)
Q Consensus       173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  252 (279)
                      ++|.++. .| .+..+++              |+.|++++|++.+..+..|..+++|+.|++++|++++..+..+..+++
T Consensus       193 ~~n~l~~-~~-~~~~l~~--------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          193 AMCNLRE-IP-NLTPLIK--------------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             TTSCCSS-CC-CCTTCSS--------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             CCCcCcc-cc-ccCCCcc--------------cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence            7777665 33 2444444              445666666666667888999999999999999999888999999999


Q ss_pred             CcEEEccCCEeeeecCccccCCcccc
Q 044855          253 LRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       253 L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      |+.|++++|.+++..++.|..++.|+
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             CCEEECCCCCCCccChhHhccccCCC
Confidence            99999999999976667788887775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.7e-26  Score=188.58  Aligned_cols=237  Identities=20%  Similarity=0.187  Sum_probs=171.4

Q ss_pred             cccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhc-------ccccceeeeecCCcccccccC
Q 044855           14 CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLA-------NHSKLEVLLLSSGSNMLQVKT   86 (279)
Q Consensus        14 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~   86 (279)
                      .+...++|+++++++|.+  .+|..+...  |++|++++|.+..........       .+++|++|++++|......+.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            455677788888888887  566655443  888899888875322222222       688999999998876555555


Q ss_pred             CCC-CCCCceeEEEecCCcCcccChhhhcC-----CCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---
Q 044855           87 ESW-HPTSQLKVLKLSDCQLHVIPSFLLQQ-----DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---  157 (279)
Q Consensus        87 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---  157 (279)
                      ..+ ..+++|++|++++|.+..+|..+..+     ++|++|++++|.+.+..      +..+..+++|++|++++|-   
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS------CEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC------TTTCCCCSSCCEEECCSCTTCH
T ss_pred             HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch------HHHhccCCCCCEEECCCCCcCc
Confidence            443 78899999999999987777666665     88999999999886322      3567778888888888873   


Q ss_pred             ----Cccc--cCCCCCcEEEccccEeee---eccccccCCCCccEEeccCCcCcc-----------cceEEEeecCccCC
Q 044855          158 ----PNWI--GNISTLRVLLMSKNYLEA---NIPVQLNHLKSLELIDIFENSLSS-----------KLITLDLRDNKFFG  217 (279)
Q Consensus       158 ----~~~~--~~~~~L~~L~l~~~~l~~---~~~~~l~~~~~L~~l~l~~~~~~~-----------~L~~L~l~~~~~~~  217 (279)
                          +..+  +.+++|+.|++++|.++.   .....+..+++|+.|++++|.+..           +|+.|++++|+++ 
T Consensus       188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence                2223  678889999999888873   122334577888888888887643           6778888888876 


Q ss_pred             CCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855          218 RIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       218 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  265 (279)
                      .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            5555544  7788888888888754 44 7778888888888887764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.3e-24  Score=172.97  Aligned_cols=213  Identities=24%  Similarity=0.274  Sum_probs=141.8

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|. ....+...+..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence            56889999998888666667888899999999988876 4455567788888888888776 344555667788888888


Q ss_pred             EecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEe
Q 044855           99 KLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYL  177 (279)
Q Consensus        99 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l  177 (279)
                      ++++|.+..++. .+..+++|+.|++++|.+...                        .++..++.+++|+.|++++|.+
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------------------------KLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------------------CCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCcccee------------------------cCchhhccCCCCCEEECCCCCC
Confidence            888888766654 566778888888888776521                        1345566677777777777777


Q ss_pred             eeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEE
Q 044855          178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMD  257 (279)
Q Consensus       178 ~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  257 (279)
                      ++..+..+..+++|+.+.+          .|++++|++.+..+..+ ...+|+.|++++|.+++..+..+..+++|+.|+
T Consensus       162 ~~~~~~~~~~l~~L~~l~l----------~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  230 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNL----------SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW  230 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCE----------EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred             CcCCHHHhhhhhhccccce----------eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence            7655555555555551111          34444444433333222 223566666666666655455556666666667


Q ss_pred             ccCCEeeeecC
Q 044855          258 LSNNIFSGSIP  268 (279)
Q Consensus       258 l~~n~l~~~~p  268 (279)
                      +++|++++..|
T Consensus       231 l~~N~~~c~c~  241 (276)
T 2z62_A          231 LHTNPWDCSCP  241 (276)
T ss_dssp             CCSSCBCCCTT
T ss_pred             ccCCcccccCC
Confidence            76666665443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=1.3e-23  Score=179.82  Aligned_cols=244  Identities=25%  Similarity=0.314  Sum_probs=109.5

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      +++|.+++ +| +++++++|++|++++|++++ +|..   .++|++|++++|.+.+ .+  .+..+++|++|++++|...
T Consensus       138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCS
T ss_pred             CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCC
Confidence            44455553 33 35555555555555555542 3322   2355555555555442 21  3455556666666555422


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI  161 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  161 (279)
                       .++.    ..++|++|++++|.+..+|. +..+++|+.|++++|.+.+...          .+.+|+.++++++-...+
T Consensus       209 -~l~~----~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~l  272 (454)
T 1jl5_A          209 -KLPD----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTDL  272 (454)
T ss_dssp             -SCCC----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSCC
T ss_pred             -cCCC----CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCccccc
Confidence             1111    11356666666666655553 5566666666666666542111          123455555544421111


Q ss_pred             -cCCCCCcEEEccccEeeee--cccc-------------ccCC-CCccEEeccCCcCcc------cceEEEeecCccCCC
Q 044855          162 -GNISTLRVLLMSKNYLEAN--IPVQ-------------LNHL-KSLELIDIFENSLSS------KLITLDLRDNKFFGR  218 (279)
Q Consensus       162 -~~~~~L~~L~l~~~~l~~~--~~~~-------------l~~~-~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~  218 (279)
                       ...++|+.|++++|.+++.  .|..             +..+ ++|+.|++++|.+..      +|+.|++++|++.+ 
T Consensus       273 ~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~-  351 (454)
T 1jl5_A          273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE-  351 (454)
T ss_dssp             CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-
T ss_pred             CcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCcccc-
Confidence             1124455555555544431  1100             0112 356666666665543      56666666666653 


Q ss_pred             CchhhhcCcCCcEEEccCCcccc--cCChhhhcc-------------cCCcEEEccCCEeee--ecCccccCC
Q 044855          219 IPYQINELSNLHVLLLRGNSLQG--HIPNELCQL-------------AKLRIMDLSNNIFSG--SIPSCLGNV  274 (279)
Q Consensus       219 ~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~n~l~~--~~p~~~~~~  274 (279)
                      +|.   .+++|+.|++++|++++  .+|.++..+             ++|+.|++++|.+++  .+|..+..+
T Consensus       352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          352 VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred             ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence            343   35677777777777776  566666655             667777777777776  666655544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.4e-23  Score=185.01  Aligned_cols=242  Identities=24%  Similarity=0.298  Sum_probs=170.8

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      |++++.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .++.    .+++|++|++++|..
T Consensus        46 ~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           46 NVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPL  113 (622)
T ss_dssp             ECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCC
T ss_pred             EecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcC
Confidence            46788888 5565554  78999999999888 5555   5789999999999886 3332    678899999988753


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchh--------------hccC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGL--------------RSST  146 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------~~~~  146 (279)
                       ..++.    .+++|++|++++|.+..+|..   +++|+.|++++|.+.+...    ....+              ..++
T Consensus       114 -~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~~~~  181 (622)
T 3g06_A          114 -THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPMLPS  181 (622)
T ss_dssp             -CCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCCT
T ss_pred             -CCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCcccCC
Confidence             23332    456788888888888777754   3778888888877653221    11111              1236


Q ss_pred             cccceeccCCCCccc-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCC
Q 044855          147 SLEGLDISGNIPNWI-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRI  219 (279)
Q Consensus       147 ~L~~l~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~  219 (279)
                      +|+.|++++|-...+ ...++|+.|++++|.++. ++.   .+++|+.|++++|.+..      +|+.|++++|.+.. +
T Consensus       182 ~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~-l  256 (622)
T 3g06_A          182 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-L  256 (622)
T ss_dssp             TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-C
T ss_pred             CCcEEECCCCCCCCCCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc-C
Confidence            667777776633222 234667777777777665 332   24778888888887764      78888888888863 4


Q ss_pred             chhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCc
Q 044855          220 PYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS  275 (279)
Q Consensus       220 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  275 (279)
                      |.   .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus       257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            43   5678999999999988 6788888899999999999999888777665443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2.2e-25  Score=182.40  Aligned_cols=234  Identities=21%  Similarity=0.231  Sum_probs=185.1

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++..|.+|+.+++|++|++++|.+++..+  |..+++|++|++++|.+.+      +...++|++|++++|..
T Consensus        40 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI  111 (317)
T ss_dssp             ECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCC
T ss_pred             ECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCcc
Confidence            588999998888999999999999999999985543  8999999999999998863      22448999999998874


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchh-hccCcccceeccCCCC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGL-RSSTSLEGLDISGNIP  158 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~  158 (279)
                      . ..+.   ..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+..      +..+ ..+++|++|+++++-.
T Consensus       112 ~-~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          112 S-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------FAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             S-EEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE------GGGGGGGTTTCCEEECTTSCC
T ss_pred             C-CcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc------HHHHhhccCcCCEEECCCCcC
Confidence            3 3333   336789999999999977754 6777899999999999887432      2333 4678999999998843


Q ss_pred             cc---ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855          159 NW---IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR  235 (279)
Q Consensus       159 ~~---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  235 (279)
                      ..   ...+++|+.|++++|.++. .+..+..+++|+.|++++|.+.               .+|..+..+++|+.|+++
T Consensus       182 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~---------------~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          182 YDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV---------------LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             CEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC---------------EECTTCCCCTTCCEEECT
T ss_pred             cccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc---------------chhhHhhcCCCCCEEEcc
Confidence            22   3347999999999999998 4445888888887777666543               245667788999999999


Q ss_pred             CCccc-ccCChhhhcccCCcEEEccCCE-eeeecC
Q 044855          236 GNSLQ-GHIPNELCQLAKLRIMDLSNNI-FSGSIP  268 (279)
Q Consensus       236 ~n~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~p  268 (279)
                      +|++. +..+..+..++.|+.+++.+|. +++..|
T Consensus       246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            99998 6778888889999999988554 554444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=4.4e-24  Score=182.67  Aligned_cols=240  Identities=20%  Similarity=0.274  Sum_probs=162.2

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcC-------------cEEeccCcccCcccchhhhccc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSL-------------EYLDLSSINFQGTFSINSLANH   67 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~~~~~~~~~   67 (279)
                      ++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+.+|             ++|++++|.+++ ++.    ..
T Consensus        17 ~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~----~~   90 (454)
T 1jl5_A           17 LRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE----LP   90 (454)
T ss_dssp             ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS----CC
T ss_pred             hcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC----Cc
Confidence            4678888 6889999999999999999999998999988888765             899999998873 221    23


Q ss_pred             ccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCc
Q 044855           68 SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTS  147 (279)
Q Consensus        68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  147 (279)
                      ++|++|++++|.... ++.    ..++|++|++++|.+..++..   .++|++|++++|.+.+       ++ .+..+++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-------lp-~~~~l~~  154 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-------LP-ELQNSSF  154 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-------CC-CCTTCTT
T ss_pred             CCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-------Cc-ccCCCCC
Confidence            688999998876433 432    247888899988888776642   2678889998887762       23 4777888


Q ss_pred             ccceeccCCCCccc-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCc
Q 044855          148 LEGLDISGNIPNWI-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIP  220 (279)
Q Consensus       148 L~~l~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~  220 (279)
                      |++++++++-...+ ....+|++|++++|.+++ .| .+..+++|+.|++++|.+..      +|+.|++++|.+. .+|
T Consensus       155 L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp  231 (454)
T 1jl5_A          155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP  231 (454)
T ss_dssp             CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC
T ss_pred             CCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc
Confidence            88888887733322 223588889998888877 45 57888888888888887764      7888888888886 455


Q ss_pred             hhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccc
Q 044855          221 YQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCL  271 (279)
Q Consensus       221 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  271 (279)
                       .+..+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|+.+
T Consensus       232 -~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~-~l~~~~  276 (454)
T 1jl5_A          232 -ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT-DLPELP  276 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS-CCCCCC
T ss_pred             -ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc-ccCccc
Confidence             37778888888888888774 3322   245666666666655 244433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=1e-26  Score=199.90  Aligned_cols=262  Identities=23%  Similarity=0.203  Sum_probs=114.9

Q ss_pred             CCCCCcCcCCCCcccc-CCC----CccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCcccchh---h-hccc
Q 044855            1 DLSSNNFEGHLPQCLN-HLT----HLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQGTFSIN---S-LANH   67 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~-~l~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~-~~~~   67 (279)
                      ||++|.+.+..+..+. .++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+.....   . ....
T Consensus        62 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  141 (461)
T 1z7x_W           62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ  141 (461)
T ss_dssp             ECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             eCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence            3555555543333222 233    46666666666652    33555666666666666666654211110   0 1123


Q ss_pred             ccceeeeecCCcccccc---cCCCCCCCCceeEEEecCCcCccc-----Chhhh-cCCCccEEEeeCCcccccCCCCCcC
Q 044855           68 SKLEVLLLSSGSNMLQV---KTESWHPTSQLKVLKLSDCQLHVI-----PSFLL-QQDHLKFLDLSHNKLVGNFPICGKM  138 (279)
Q Consensus        68 ~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~  138 (279)
                      ++|++|++++|......   ....+..+++|++|++++|.+...     ...+. ..++|++|++++|.+.....  ..+
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l  219 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDL  219 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHH
Confidence            45666666555432211   112233445555555555554221     11111 23455555555554432100  012


Q ss_pred             cchhhccCcccceeccCCCCc----------cccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCc--
Q 044855          139 DDGLRSSTSLEGLDISGNIPN----------WIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLS--  202 (279)
Q Consensus       139 ~~~~~~~~~L~~l~l~~~~~~----------~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~--  202 (279)
                      +..+..+++|++|+++++-..          .+..+++|+.|++++|.++..    ++..+..+++|+.|++++|.+.  
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            233444455555555544111          111344555555555544432    2333344455555555555442  


Q ss_pred             -------------ccceEEEeecCccCCC----CchhhhcCcCCcEEEccCCcccccCChhhhc-----ccCCcEEEccC
Q 044855          203 -------------SKLITLDLRDNKFFGR----IPYQINELSNLHVLLLRGNSLQGHIPNELCQ-----LAKLRIMDLSN  260 (279)
Q Consensus       203 -------------~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~  260 (279)
                                   .+|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .++|+.|++++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence                         1445555555544332    2223333444444444444444333332221     33444444444


Q ss_pred             CEee
Q 044855          261 NIFS  264 (279)
Q Consensus       261 n~l~  264 (279)
                      |.++
T Consensus       380 n~i~  383 (461)
T 1z7x_W          380 CDVS  383 (461)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            4444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=2.7e-26  Score=197.29  Aligned_cols=263  Identities=22%  Similarity=0.185  Sum_probs=174.2

Q ss_pred             CCCCCcCcC----CCCccccCCCCccEEEeeCCcccccCCccc-----cCCCcCcEEeccCcccCcccc---hhhhcccc
Q 044855            1 DLSSNNFEG----HLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-----TNFTSLEYLDLSSINFQGTFS---INSLANHS   68 (279)
Q Consensus         1 ~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~   68 (279)
                      ||++|.++.    .++.++..+++|++|++++|.+++..+..+     ...++|++|++++|.+.+...   ...+..++
T Consensus        91 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  170 (461)
T 1z7x_W           91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP  170 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred             EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC
Confidence            467777774    447778888888888888888764433332     225678888888887764221   23456678


Q ss_pred             cceeeeecCCcccccccCCCC-----CCCCceeEEEecCCcCcc-----cChhhhcCCCccEEEeeCCcccccCCCCCcC
Q 044855           69 KLEVLLLSSGSNMLQVKTESW-----HPTSQLKVLKLSDCQLHV-----IPSFLLQQDHLKFLDLSHNKLVGNFPICGKM  138 (279)
Q Consensus        69 ~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  138 (279)
                      +|++|++++|....... ..+     ...++|++|++++|.++.     ++..+..+++|++|++++|.+.+...  ..+
T Consensus       171 ~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--~~l  247 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM--AEL  247 (461)
T ss_dssp             TCCEEECCSSBCHHHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH--HHH
T ss_pred             CCCEEECcCCCcchHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH--HHH
Confidence            88888888776422211 111     135578888888887754     46666778888888888887653210  001


Q ss_pred             cc-hhhccCcccceeccCCC---------CccccCCCCCcEEEccccEeeeecccccc-----CCCCccEEeccCCcCcc
Q 044855          139 DD-GLRSSTSLEGLDISGNI---------PNWIGNISTLRVLLMSKNYLEANIPVQLN-----HLKSLELIDIFENSLSS  203 (279)
Q Consensus       139 ~~-~~~~~~~L~~l~l~~~~---------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~l~l~~~~~~~  203 (279)
                      .. ....+++|++|++++|-         +..+..+++|+.|++++|.+....+..+.     ..++|+.|++++|.+..
T Consensus       248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence            11 12246788888888772         23344578888888888877653333322     23688888888887752


Q ss_pred             --------------cceEEEeecCccCCCCchhhhc-----CcCCcEEEccCCcccc----cCChhhhcccCCcEEEccC
Q 044855          204 --------------KLITLDLRDNKFFGRIPYQINE-----LSNLHVLLLRGNSLQG----HIPNELCQLAKLRIMDLSN  260 (279)
Q Consensus       204 --------------~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~  260 (279)
                                    +|+.|++++|.+.+..+..+..     .++|+.|++++|.+++    .++..+..+++|+.|++++
T Consensus       328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  407 (461)
T 1z7x_W          328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  407 (461)
T ss_dssp             GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence                          7888888888876554444432     5688888888888876    5667777788888888888


Q ss_pred             CEeeee
Q 044855          261 NIFSGS  266 (279)
Q Consensus       261 n~l~~~  266 (279)
                      |++++.
T Consensus       408 N~i~~~  413 (461)
T 1z7x_W          408 NCLGDA  413 (461)
T ss_dssp             SSCCHH
T ss_pred             CCCCHH
Confidence            888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.7e-23  Score=166.41  Aligned_cols=211  Identities=20%  Similarity=0.308  Sum_probs=152.4

Q ss_pred             cccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855           14 CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS   93 (279)
Q Consensus        14 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   93 (279)
                      .+..+++|+.|++.++.++ ..+ .+..+++|++|++++|.+.+.   ..+..+++|++|++++|. ...++...+..++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~  109 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQ-LQSLPNGVFDKLT  109 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred             ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCc-cCccChhHhcCCc
Confidence            3456788888888888776 333 477788888888888877632   356777788888887775 3455555667777


Q ss_pred             ceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEc
Q 044855           94 QLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLM  172 (279)
Q Consensus        94 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l  172 (279)
                      +|++|++++|.+..++.. +..+++|+.|++++|.+.+.                         .+..++.+++|+.|++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL-------------------------PKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------------------CTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc-------------------------CHHHhccCccCCEEEC
Confidence            888888888877666553 56677788888887766521                         1234567788888888


Q ss_pred             cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC
Q 044855          173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK  252 (279)
Q Consensus       173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  252 (279)
                      ++|.+++..+..+..+++|+.|++++              |++.+..+..+..+++|+.|++++|++.       +.++.
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~--------------N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~  223 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQ--------------NQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPG  223 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCS--------------SCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTT
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCC--------------CcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcH
Confidence            88888875565667777666555544              4454556666788899999999999887       34667


Q ss_pred             CcEEEccCCEeeeecCccccCCcc
Q 044855          253 LRIMDLSNNIFSGSIPSCLGNVSF  276 (279)
Q Consensus       253 L~~L~l~~n~l~~~~p~~~~~~~~  276 (279)
                      ++.+++..|.++|.+|..++.++.
T Consensus       224 l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHHHHHHhCCCcccCcccccCC
Confidence            888899999999999988887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2.3e-22  Score=162.23  Aligned_cols=205  Identities=25%  Similarity=0.261  Sum_probs=141.5

Q ss_pred             ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855           13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT   92 (279)
Q Consensus        13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   92 (279)
                      ..+++++++++++++++.++ .+|..+.  +++++|++++|.+. ......+..+++|++|++++|... .++..  ..+
T Consensus         4 C~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l   76 (290)
T 1p9a_G            4 CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTL   76 (290)
T ss_dssp             SEEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCC
T ss_pred             ccccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccC-cccCC--CCC
Confidence            45788999999999999998 5665553  78999999999987 555577889999999999988643 33332  678


Q ss_pred             CceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEc
Q 044855           93 SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLM  172 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l  172 (279)
                      ++|++|++++|.+..+|..+..+++|+.|++++|.+....                         +..+..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-------------------------~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-------------------------LGALRGLGELQELYL  131 (290)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-------------------------SSTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC-------------------------HHHHcCCCCCCEEEC
Confidence            8999999999999999988888999999999999876322                         234555566666666


Q ss_pred             cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC
Q 044855          173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK  252 (279)
Q Consensus       173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  252 (279)
                      ++|.++...+..+..+++|+.|++++|.+              .+..+..+..+++|+.|++++|+++ .+|..+...++
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------------~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~  196 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNNL--------------TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCC--------------SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCcC--------------CccCHHHhcCcCCCCEEECCCCcCC-ccChhhccccc
Confidence            66666654444555555555444444433              2233334455556666666666655 44555555555


Q ss_pred             CcEEEccCCEee
Q 044855          253 LRIMDLSNNIFS  264 (279)
Q Consensus       253 L~~L~l~~n~l~  264 (279)
                      |+.+++++|++.
T Consensus       197 L~~l~L~~Np~~  208 (290)
T 1p9a_G          197 LPFAFLHGNPWL  208 (290)
T ss_dssp             CSEEECCSCCBC
T ss_pred             CCeEEeCCCCcc
Confidence            666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2e-22  Score=161.13  Aligned_cols=201  Identities=21%  Similarity=0.312  Sum_probs=108.5

Q ss_pred             CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855           20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK   99 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   99 (279)
                      +.++++++++.++ .+|..+.  +++++|++++|.+. ..+...+..+++|++|++++|. +..++...+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence            4566777777766 4554332  56777777777665 3444456666777777776664 3345555566677777777


Q ss_pred             ecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEee
Q 044855          100 LSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE  178 (279)
Q Consensus       100 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~  178 (279)
                      +++|.+..++. .+..+++|++|++++|.+....                         +..++.+++|+.|++++|.++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-------------------------PRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-------------------------HHHhCcCcCCCEEECCCCcCC
Confidence            77777766654 3455677777777776654221                         122344455555555555555


Q ss_pred             eeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEc
Q 044855          179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDL  258 (279)
Q Consensus       179 ~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  258 (279)
                      ...+..+..+++|+.|++++|.              +.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus       147 ~~~~~~~~~l~~L~~L~L~~n~--------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          147 SLPKGVFDKLTSLKELRLYNNQ--------------LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL  212 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC--------------CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccCHhHccCCcccceeEecCCc--------------CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence            4333334444444433333332              22223333444455555555555554333334444455555555


Q ss_pred             cCCEee
Q 044855          259 SNNIFS  264 (279)
Q Consensus       259 ~~n~l~  264 (279)
                      ++|++.
T Consensus       213 ~~N~~~  218 (270)
T 2o6q_A          213 QENPWD  218 (270)
T ss_dssp             CSSCBC
T ss_pred             cCCCee
Confidence            555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=8.8e-24  Score=182.44  Aligned_cols=225  Identities=21%  Similarity=0.218  Sum_probs=180.1

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+.+..|.+|+.+++|++|+|++|.+++..+  |..+++|++|++++|.+.+.      ...++|+.|++++|..
T Consensus        40 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNI  111 (487)
T ss_dssp             ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------EECTTCCEEECCSSCC
T ss_pred             EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------CCCCCcCEEECcCCcC
Confidence            588999999888999999999999999999986554  89999999999999988632      2338999999999875


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhh-ccCcccceeccCCCC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLR-SSTSLEGLDISGNIP  158 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~  158 (279)
                      .. .+.   ..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+..      +..+. .+++|+.|++++|-.
T Consensus       112 ~~-~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          112 SR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------FAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CC-EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE------GGGGGGGTTTCCEEECTTSCC
T ss_pred             CC-CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC------hHHHhhhCCcccEEecCCCcc
Confidence            43 333   2468899999999999766 457778999999999999887432      34444 689999999999843


Q ss_pred             cc---ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855          159 NW---IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR  235 (279)
Q Consensus       159 ~~---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  235 (279)
                      ..   ...+++|+.|++++|.+++ .|..+..+++|+.|++++|.+.               .+|..+..+++|+.|+++
T Consensus       182 ~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~---------------~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          182 YDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV---------------LIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             CEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC---------------EECTTCCCCTTCCEEECT
T ss_pred             ccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc---------------ccchhhccCCCCCEEEcC
Confidence            22   3458999999999999998 4445888888887777666543               255567788999999999


Q ss_pred             CCccc-ccCChhhhcccCCcEEEcc
Q 044855          236 GNSLQ-GHIPNELCQLAKLRIMDLS  259 (279)
Q Consensus       236 ~n~~~-~~~~~~~~~~~~L~~L~l~  259 (279)
                      +|++. +..+..+..++.++.++++
T Consensus       246 ~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          246 GNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcCcchHHHHHhCCCCcEEecc
Confidence            99987 5677778888888888775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.2e-22  Score=161.44  Aligned_cols=204  Identities=20%  Similarity=0.227  Sum_probs=156.8

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.++...+.+|+++++|++|++++|.+++..+..|..+++|++|++++|.+. ......+..+++|++|++++|..
T Consensus        34 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCc
Confidence            57899999888889999999999999999999777778999999999999999987 45557789999999999998864


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP  158 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  158 (279)
                       .......+..+++|++|++++|.+..  +|..+..+++|+.|++++|.+.+..+      ..+..+..           
T Consensus       113 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~-----------  174 (276)
T 2z62_A          113 -ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC------TDLRVLHQ-----------  174 (276)
T ss_dssp             -CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG------GGGHHHHT-----------
T ss_pred             -cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH------HHhhhhhh-----------
Confidence             44555568899999999999999976  67889999999999999998763221      22222222           


Q ss_pred             ccccCCCCCc-EEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855          159 NWIGNISTLR-VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN  237 (279)
Q Consensus       159 ~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  237 (279)
                           ++.+. .|++++|.++...+..+. ..+|+              .|++++|++.+..+..+..+++|+.|++++|
T Consensus       175 -----L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~--------------~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          175 -----MPLLNLSLDLSLNPMNFIQPGAFK-EIRLK--------------ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             -----CTTCCEEEECCSSCCCEECTTSSC-SCCEE--------------EEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             -----ccccceeeecCCCcccccCccccC-CCccc--------------EEECCCCceeecCHhHhcccccccEEEccCC
Confidence                 22222 788888888775444433 23444              5555556655555556788899999999999


Q ss_pred             cccccC
Q 044855          238 SLQGHI  243 (279)
Q Consensus       238 ~~~~~~  243 (279)
                      +++...
T Consensus       235 ~~~c~c  240 (276)
T 2z62_A          235 PWDCSC  240 (276)
T ss_dssp             CBCCCT
T ss_pred             cccccC
Confidence            988543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=3.5e-23  Score=169.01  Aligned_cols=198  Identities=24%  Similarity=0.252  Sum_probs=103.3

Q ss_pred             CCCCccEEEeeCCcccccCCccc--cCCCcCcEEeccCcccCcccchhhhccc-----ccceeeeecCCcccccccCCCC
Q 044855           17 HLTHLKVLDIFNNQLSGNFPSTL--TNFTSLEYLDLSSINFQGTFSINSLANH-----SKLEVLLLSSGSNMLQVKTESW   89 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~   89 (279)
                      ++++|++|++++|.+++..|..+  ..+++|++|++++|.+.+. + ..+..+     ++|++|++++|. +...+...+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence            35555555555555554444433  4555555555555555432 1 222222     455555555444 233333344


Q ss_pred             CCCCceeEEEecCCcCcc---cChhh--hcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCC
Q 044855           90 HPTSQLKVLKLSDCQLHV---IPSFL--LQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNI  164 (279)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  164 (279)
                      ..+++|++|++++|.+..   ++..+  ..+++|++|++++|.+.....   ....                   .+..+
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-------------------~~~~l  227 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG---VCSA-------------------LAAAR  227 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---HHHH-------------------HHHTT
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH---HHHH-------------------HHhcC
Confidence            455555555555554321   12222  344555555555554431100   0001                   12244


Q ss_pred             CCCcEEEccccEeeeecc-ccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEEEccC
Q 044855          165 STLRVLLMSKNYLEANIP-VQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRG  236 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  236 (279)
                      ++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..       +|+.|++++|++.+. |. +..+++|+.|++++
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence            555666666655555332 234445556666665555432       677888888888665 54 88999999999999


Q ss_pred             Ccccc
Q 044855          237 NSLQG  241 (279)
Q Consensus       237 n~~~~  241 (279)
                      |++++
T Consensus       306 N~l~~  310 (312)
T 1wwl_A          306 NPFLD  310 (312)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            99985

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.6e-21  Score=154.67  Aligned_cols=197  Identities=21%  Similarity=0.283  Sum_probs=152.1

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      |++++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++|. 
T Consensus        22 ~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~-   96 (270)
T 2o6q_A           22 DCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK-   96 (270)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSC-
T ss_pred             EccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCc-
Confidence            46677888 4555443  68999999999999766678999999999999999987 5565677889999999999886 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN  159 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  159 (279)
                      +..++...+..+++|++|++++|.+..++. .+..+++|+.|++++|.+....                         +.
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------------------~~  151 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-------------------------KG  151 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------TT
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-------------------------Hh
Confidence            456667778899999999999999987765 4678999999999999876221                         23


Q ss_pred             cccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855          160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL  239 (279)
Q Consensus       160 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (279)
                      .+..+++|+.|++++|.++...+..+..+++|+.|++++|              ++.+..+..+..+++|+.|++++|++
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN--------------QLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS--------------CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC--------------cCCcCCHHHhccccCCCEEEecCCCe
Confidence            3566778888888888887755556777776665555444              34344455567788888888888887


Q ss_pred             cc
Q 044855          240 QG  241 (279)
Q Consensus       240 ~~  241 (279)
                      ..
T Consensus       218 ~c  219 (270)
T 2o6q_A          218 DC  219 (270)
T ss_dssp             CC
T ss_pred             eC
Confidence            53

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=4.1e-24  Score=178.04  Aligned_cols=249  Identities=16%  Similarity=0.170  Sum_probs=151.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCC----ccccCCC-cCcEEeccCcccCcccchhhhccc-----ccc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFP----STLTNFT-SLEYLDLSSINFQGTFSINSLANH-----SKL   70 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-----~~L   70 (279)
                      +|++|.+++.+|..+...++|++|++++|.+++..+    ..|..++ +|++|++++|.+.+. ....+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCc
Confidence            478899998888887777889999999999986665    6788888 999999999988743 23334333     889


Q ss_pred             eeeeecCCcccccccC---CCCCCC-CceeEEEecCCcCcccCh-----hhhc-CCCccEEEeeCCcccccCCCCCcCcc
Q 044855           71 EVLLLSSGSNMLQVKT---ESWHPT-SQLKVLKLSDCQLHVIPS-----FLLQ-QDHLKFLDLSHNKLVGNFPICGKMDD  140 (279)
Q Consensus        71 ~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~  140 (279)
                      ++|++++|......+.   ..+..+ ++|++|++++|.++..+.     .+.. .++|++|++++|.+.+...  ..+..
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~  160 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--DELIQ  160 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--HHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--HHHHH
Confidence            9999998874322211   123344 789999999998866553     2333 3589999999988763321  12222


Q ss_pred             hhhccC-cccceeccCCCCc---------cccCC-CCCcEEEccccEeeee----ccccccC-CCCccEEeccCCcCccc
Q 044855          141 GLRSST-SLEGLDISGNIPN---------WIGNI-STLRVLLMSKNYLEAN----IPVQLNH-LKSLELIDIFENSLSSK  204 (279)
Q Consensus       141 ~~~~~~-~L~~l~l~~~~~~---------~~~~~-~~L~~L~l~~~~l~~~----~~~~l~~-~~~L~~l~l~~~~~~~~  204 (279)
                      .+...+ +|++|++++|-..         .+... ++|+.|++++|.++..    ++..+.. .++              
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~--------------  226 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH--------------  226 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT--------------
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC--------------
Confidence            333333 5666666655211         12223 3566666666655442    1222222 234              


Q ss_pred             ceEEEeecCccCCCCc----hhhhcCcCCcEEEccCCccccc-------CChhhhcccCCcEEEccCCEeeee
Q 044855          205 LITLDLRDNKFFGRIP----YQINELSNLHVLLLRGNSLQGH-------IPNELCQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       205 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~  266 (279)
                      |+.|++++|.+.+..+    ..+..+++|+.|++++|.+.+.       .+..+..+++|+.||+++|++.+.
T Consensus       227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            4455555555544433    2234556677777777763322       122344556667777777776544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=5.7e-21  Score=168.54  Aligned_cols=221  Identities=22%  Similarity=0.233  Sum_probs=163.3

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      .+++.|+++++.++ .+|..+.  ++|++|++++|.+. .++.    .+++|++|++++|.. ..++.    .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQL-TSLPV----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCC-SCCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcC-CcCCC----CCCCCCEE
Confidence            46899999999998 7777664  89999999999987 3332    578999999999874 34443    67899999


Q ss_pred             EecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc-cCC-------------
Q 044855           99 KLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI-GNI-------------  164 (279)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~-------------  164 (279)
                      ++++|.+..++.   .+++|+.|++++|.+....       .   .+++|++|++++|-...+ ...             
T Consensus       107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp-------~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          107 SIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLP-------V---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL  173 (622)
T ss_dssp             EECSCCCCCCCC---CCTTCCEEECCSSCCSCCC-------C---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             ECcCCcCCCCCC---CCCCcCEEECCCCCCCcCC-------C---CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCC
Confidence            999999988887   5688999999999887422       2   136788888877622221 112             


Q ss_pred             -------CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855          165 -------STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQINELSNLHV  231 (279)
Q Consensus       165 -------~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~L~~  231 (279)
                             ++|+.|++++|.++. +|.   ..++|+.|++++|.+..      +|+.|++++|.+.+ +|   ..+++|+.
T Consensus       174 ~~l~~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~  245 (622)
T 3g06_A          174 TSLPMLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKE  245 (622)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred             CCCcccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence                   455555555555544 222   23556666666665543      68888888888765 44   45688999


Q ss_pred             EEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      |++++|.++ .+|.   .+++|+.|++++|.++ .+|..+..++.|+
T Consensus       246 L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~  287 (622)
T 3g06_A          246 LMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET  287 (622)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred             EECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence            999999988 4444   5688999999999999 8899999988876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.3e-21  Score=159.31  Aligned_cols=194  Identities=20%  Similarity=0.260  Sum_probs=119.8

Q ss_pred             ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855           15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ   94 (279)
Q Consensus        15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~   94 (279)
                      ++.+++|++|+++++.++ .++ .+..+++|++|++++|.+.+. +.  +..+++|++|++++|... ..+  .+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~--~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP--LKNLTKITELELSGNPLK-NVS--AIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh--HccCCCCCEEEccCCcCC-Cch--hhcCCCC
Confidence            456888888888888887 444 577888889999988887632 22  777888888888877632 332  4677888


Q ss_pred             eeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccc
Q 044855           95 LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSK  174 (279)
Q Consensus        95 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~  174 (279)
                      |++|++++|.+..++. +..+++|+.|++++|.+.+..                           .++.+++|+.|++++
T Consensus       109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~  160 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS---------------------------PLAGLTNLQYLSIGN  160 (308)
T ss_dssp             CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG---------------------------GGGGCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc---------------------------cccCCCCccEEEccC
Confidence            8888888888877654 677788888888887765211                           134445555555555


Q ss_pred             cEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCc
Q 044855          175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLR  254 (279)
Q Consensus       175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  254 (279)
                      |.+++. +. +..+++|+.|++++|.+.              +. + .+..+++|+.|++++|++++..  .+..+++|+
T Consensus       161 n~l~~~-~~-l~~l~~L~~L~l~~n~l~--------------~~-~-~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~  220 (308)
T 1h6u_A          161 AQVSDL-TP-LANLSKLTTLKADDNKIS--------------DI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLF  220 (308)
T ss_dssp             SCCCCC-GG-GTTCTTCCEEECCSSCCC--------------CC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred             CcCCCC-hh-hcCCCCCCEEECCCCccC--------------cC-h-hhcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence            555542 22 445555544444433322              11 1 1444555555555555555332  244555555


Q ss_pred             EEEccCCEee
Q 044855          255 IMDLSNNIFS  264 (279)
Q Consensus       255 ~L~l~~n~l~  264 (279)
                      .|++++|+++
T Consensus       221 ~L~l~~N~i~  230 (308)
T 1h6u_A          221 IVTLTNQTIT  230 (308)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEccCCeee
Confidence            5555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5e-24  Score=179.08  Aligned_cols=243  Identities=16%  Similarity=0.152  Sum_probs=155.2

Q ss_pred             CCCccccCCCCccEEEeeCCcccccCC----ccccCCCcCcEEeccCcccCc---ccch------hhhcccccceeeeec
Q 044855           10 HLPQCLNHLTHLKVLDIFNNQLSGNFP----STLTNFTSLEYLDLSSINFQG---TFSI------NSLANHSKLEVLLLS   76 (279)
Q Consensus        10 ~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~---~~~~------~~~~~~~~L~~L~l~   76 (279)
                      .++.++..+++|++|++++|.+....+    ..+..+++|++|++++|.+..   ..+.      ..+..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            456677788889999999988875433    346788899999998875431   1111      123677888888888


Q ss_pred             CCccccc---ccCCCCCCCCceeEEEecCCcCc-----ccChhhhcC---------CCccEEEeeCCcccccCCCCCcCc
Q 044855           77 SGSNMLQ---VKTESWHPTSQLKVLKLSDCQLH-----VIPSFLLQQ---------DHLKFLDLSHNKLVGNFPICGKMD  139 (279)
Q Consensus        77 ~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~---------~~L~~L~l~~~~~~~~~~~~~~~~  139 (279)
                      +|.....   .....+..+++|++|++++|.+.     .++..+..+         ++|+.|++++|.+.....  ..+.
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~  180 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--KEWA  180 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--HHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH--HHHH
Confidence            7764331   12234566778888888888773     233334444         788888888877642110  0122


Q ss_pred             chhhccCcccceeccCCCCc----------cccCCCCCcEEEccccEee----eeccccccCCCCccEEeccCCcCcccc
Q 044855          140 DGLRSSTSLEGLDISGNIPN----------WIGNISTLRVLLMSKNYLE----ANIPVQLNHLKSLELIDIFENSLSSKL  205 (279)
Q Consensus       140 ~~~~~~~~L~~l~l~~~~~~----------~~~~~~~L~~L~l~~~~l~----~~~~~~l~~~~~L~~l~l~~~~~~~~L  205 (279)
                      ..+..+++|+.|++++|-..          .+..+++|+.|++++|.++    ..++..+..+++|+.|++++       
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~-------  253 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND-------  253 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT-------
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC-------
Confidence            34556667777777666322          4556667777777777664    23444555666666555554       


Q ss_pred             eEEEeecCccCCC----Cchhhhc--CcCCcEEEccCCcccc----cCChhh-hcccCCcEEEccCCEeeeecC
Q 044855          206 ITLDLRDNKFFGR----IPYQINE--LSNLHVLLLRGNSLQG----HIPNEL-CQLAKLRIMDLSNNIFSGSIP  268 (279)
Q Consensus       206 ~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~p  268 (279)
                             |.+.+.    ++..+..  +++|+.|++++|.+++    .++..+ ..+++|+.|++++|++++..|
T Consensus       254 -------n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          254 -------CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             -------CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             -------CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence                   444333    3445533  7889999999999886    366666 557899999999999886553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=1.7e-21  Score=152.91  Aligned_cols=198  Identities=16%  Similarity=0.166  Sum_probs=123.5

Q ss_pred             CccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      ++++|++++|.+++..+..|..+++|++|++++|. +. .++...+..+++|++|+++++.....++...|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            67777777777775555567777777777777775 54 44445566677777777766223445555566667777777


Q ss_pred             EecCCcCcccChhhhcCCCcc---EEEeeCC-cccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCc-EEEcc
Q 044855           99 KLSDCQLHVIPSFLLQQDHLK---FLDLSHN-KLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLR-VLLMS  173 (279)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~-~L~l~  173 (279)
                      ++++|.+..+|. +..+++|+   .|++++| .+....                         +..+..+++|+ .|+++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-------------------------~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-------------------------VNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-------------------------TTTTTTTBSSEEEEECC
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcC-------------------------cccccchhcceeEEEcC
Confidence            777776666665 55555555   6677666 443111                         23456667777 77777


Q ss_pred             ccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCc-cCCCCchhhhcC-cCCcEEEccCCcccccCChhhhccc
Q 044855          174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNK-FFGRIPYQINEL-SNLHVLLLRGNSLQGHIPNELCQLA  251 (279)
Q Consensus       174 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~  251 (279)
                      +|.++...+..+.. ++|+.              |++++|+ +.+..+..+..+ ++|+.|++++|++++..+.   .++
T Consensus       165 ~n~l~~i~~~~~~~-~~L~~--------------L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~  226 (239)
T 2xwt_C          165 NNGFTSVQGYAFNG-TKLDA--------------VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLE  226 (239)
T ss_dssp             SCCCCEECTTTTTT-CEEEE--------------EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCT
T ss_pred             CCCCcccCHhhcCC-CCCCE--------------EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hhc
Confidence            77776533333333 44444              4444442 433445566777 8888888888888743333   566


Q ss_pred             CCcEEEccCCE
Q 044855          252 KLRIMDLSNNI  262 (279)
Q Consensus       252 ~L~~L~l~~n~  262 (279)
                      +|+.|+++++.
T Consensus       227 ~L~~L~l~~~~  237 (239)
T 2xwt_C          227 HLKELIARNTW  237 (239)
T ss_dssp             TCSEEECTTC-
T ss_pred             cCceeeccCcc
Confidence            78888887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=4e-23  Score=170.37  Aligned_cols=239  Identities=17%  Similarity=0.186  Sum_probs=160.9

Q ss_pred             CccccCC--CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCC
Q 044855           12 PQCLNHL--THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESW   89 (279)
Q Consensus        12 ~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   89 (279)
                      +..+..+  ++++.++++++.+.+..+. +..+++|++|++++|.+.+......+..+++|++|++++|..... ....+
T Consensus        61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l  138 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTL  138 (336)
T ss_dssp             HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHH
T ss_pred             HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHH
Confidence            3455555  7888888888888755554 557888888888888776332345667788888888888753322 23345


Q ss_pred             CCCCceeEEEecCC-cCc--ccChhhhcCCCccEEEeeCC-cccccCCCCCcCcchhhccC-cccceeccCCC-------
Q 044855           90 HPTSQLKVLKLSDC-QLH--VIPSFLLQQDHLKFLDLSHN-KLVGNFPICGKMDDGLRSST-SLEGLDISGNI-------  157 (279)
Q Consensus        90 ~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~-------  157 (279)
                      ..+++|++|++++| .++  .++..+..+++|++|++++| .+.+.     .+...+..++ +|++|+++++-       
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~  213 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNLSGYRKNLQKSD  213 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence            66788888888888 564  35666777888888888887 65421     1234566677 78888887762       


Q ss_pred             -CccccCCCCCcEEEccccE-eeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855          158 -PNWIGNISTLRVLLMSKNY-LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR  235 (279)
Q Consensus       158 -~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  235 (279)
                       +..+..+++|+.|++++|. ++...+..+..+++|+.|++++|.             .+.+.....+..+++|+.|+++
T Consensus       214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-------------DIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-------------TCCGGGGGGGGGCTTCCEEECT
T ss_pred             HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-------------CCCHHHHHHHhcCCCCCEEecc
Confidence             2334567788888888877 555455566666666666555542             1222223357789999999999


Q ss_pred             CCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855          236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN  273 (279)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  273 (279)
                      +| +++.....+.  ..+..|++++|.+++..|..++.
T Consensus       281 ~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          281 GI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             Cc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence            99 6544333332  23566668999999999987765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=7.4e-21  Score=149.29  Aligned_cols=199  Identities=18%  Similarity=0.262  Sum_probs=149.6

Q ss_pred             cCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecC-CcCcccCh-h
Q 044855           34 NFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSD-CQLHVIPS-F  111 (279)
Q Consensus        34 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~  111 (279)
                      .+|. +  .++|++|++++|.+. .++...+..+++|++|++++|..+..++...|..+++|++|++++ |.++.++. .
T Consensus        25 ~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           25 RIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            5555 3  348999999999887 555567888899999999888656667777788888999999988 88877764 5


Q ss_pred             hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCc---EEEcccc-EeeeeccccccC
Q 044855          112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLR---VLLMSKN-YLEANIPVQLNH  187 (279)
Q Consensus       112 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~l~~  187 (279)
                      +..+++|+.|++++|.+.+                          ++. +..+++|+   .|++++| .++...+..+..
T Consensus       101 f~~l~~L~~L~l~~n~l~~--------------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM--------------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS--------------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             hCCCCCCCEEeCCCCCCcc--------------------------ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence            6678889999998887652                          122 44555555   9999999 888866667888


Q ss_pred             CCCcc-EEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc-ccccCChhhhcc-cCCcEEEccCCEee
Q 044855          188 LKSLE-LIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS-LQGHIPNELCQL-AKLRIMDLSNNIFS  264 (279)
Q Consensus       188 ~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~l~  264 (279)
                      +++|+ .+++++|.+.              ...+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|.++
T Consensus       154 l~~L~~~L~l~~n~l~--------------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFT--------------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TBSSEEEEECCSCCCC--------------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             hhcceeEEEcCCCCCc--------------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            88877 7777666543              222334444 789999999995 987777888899 99999999999999


Q ss_pred             eecCccccCCcccc
Q 044855          265 GSIPSCLGNVSFWR  278 (279)
Q Consensus       265 ~~~p~~~~~~~~l~  278 (279)
                      +.-+..|.+++.|+
T Consensus       219 ~l~~~~~~~L~~L~  232 (239)
T 2xwt_C          219 ALPSKGLEHLKELI  232 (239)
T ss_dssp             CCCCTTCTTCSEEE
T ss_pred             cCChhHhccCceee
Confidence            43334577766653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=1.6e-20  Score=151.45  Aligned_cols=193  Identities=22%  Similarity=0.181  Sum_probs=146.4

Q ss_pred             ccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCc
Q 044855           39 LTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHL  118 (279)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  118 (279)
                      +.+++++++++++++.++ .++...   .+.++.|++++|.. ..+....+..+++|++|++++|.++.++.. ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcC-CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence            567888999999988876 333221   25778888877763 444455677788888888888887666544 567778


Q ss_pred             cEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccC
Q 044855          119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFE  198 (279)
Q Consensus       119 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~  198 (279)
                      +.|++++|.+.                          .++..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus        80 ~~L~Ls~N~l~--------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           80 GTLDLSHNQLQ--------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (290)
T ss_dssp             CEEECCSSCCS--------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCC--------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence            88888877664                          1345567788999999999999886667788888777666655


Q ss_pred             CcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          199 NSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       199 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      |.              +.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|+.+...+.|+
T Consensus       134 N~--------------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~  198 (290)
T 1p9a_G          134 NE--------------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (290)
T ss_dssp             SC--------------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             CC--------------CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCC
Confidence            54              44455667788999999999999999666667788999999999999999 8888777766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=159.10  Aligned_cols=227  Identities=20%  Similarity=0.181  Sum_probs=158.6

Q ss_pred             CCCccEEEeeCCcccccCCc---cccCCCcCcEEeccCcccCcccchhhh-cccccceeeeecCCccccccc---CCCCC
Q 044855           18 LTHLKVLDIFNNQLSGNFPS---TLTNFTSLEYLDLSSINFQGTFSINSL-ANHSKLEVLLLSSGSNMLQVK---TESWH   90 (279)
Q Consensus        18 l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~   90 (279)
                      ...++.+.+.++.++.....   .+..+++|++|++++|.+.+..+...+ ..+++|++|++++|......+   ...+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34478888888776532111   123457799999999988755543333 788999999999887543222   12334


Q ss_pred             CCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc--------cc
Q 044855           91 PTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN--------WI  161 (279)
Q Consensus        91 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------~~  161 (279)
                      .+++|++|++++|.+..++ ..+..+++|++|++++|.+.+....  .....+..+++|++|++++|-..        .+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL--MAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH--HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh--hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            6889999999999997665 5677889999999999986421100  01122356788999999988432        23


Q ss_pred             cCCCCCcEEEccccEeeeeccccccCC---CCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855          162 GNISTLRVLLMSKNYLEANIPVQLNHL---KSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS  238 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  238 (279)
                      +.+++|++|++++|.+++..|..+..+   ++|+              +|++++|++. .+|..+.  ++|+.|++++|+
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~--------------~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN--------------SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR  283 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC--------------CEECCSSCCC-SCCSCCC--SCCSCEECCSCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCC--------------EEECCCCCCC-chhhhhc--CCCCEEECCCCc
Confidence            567899999999999988656666555   4555              5555555554 4555543  799999999999


Q ss_pred             ccccCChhhhcccCCcEEEccCCEeee
Q 044855          239 LQGHIPNELCQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       239 ~~~~~~~~~~~~~~L~~L~l~~n~l~~  265 (279)
                      +++. |. +..+++|+.|++++|+++.
T Consensus       284 l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          284 LNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9853 33 5778999999999999873

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=7.1e-20  Score=146.45  Aligned_cols=200  Identities=20%  Similarity=0.220  Sum_probs=146.5

Q ss_pred             CCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEE
Q 044855           42 FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFL  121 (279)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  121 (279)
                      +..+..+++.++.+.+.   .....+++|+.|+++++... ..  ..+..+++|++|++++|.+..++ .+..+++|++|
T Consensus        18 ~~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L   90 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEE
T ss_pred             HHHHHHHHhcCcccccc---cccccccceeeeeeCCCCcc-cc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEE
Confidence            34555566666655433   34566788999999877632 22  34678899999999999987764 67788999999


Q ss_pred             EeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEec
Q 044855          122 DLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDI  196 (279)
Q Consensus       122 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l  196 (279)
                      ++++|.+.+..      +..+..+++|++|+++++     .+..++.+++|+.|++++|.++...+..+..+++|+    
T Consensus        91 ~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----  160 (272)
T 3rfs_A           91 ILTGNQLQSLP------NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT----  160 (272)
T ss_dssp             ECTTSCCCCCC------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC----
T ss_pred             ECCCCccCccC------hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC----
Confidence            99999876322      234566777777777766     123356677777777777777765555556666555    


Q ss_pred             cCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecC
Q 044855          197 FENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP  268 (279)
Q Consensus       197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  268 (279)
                                .|++++|++.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       161 ----------~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          161 ----------ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             ----------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ----------EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence                      45555555555666677899999999999999998888888999999999999999997766

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=153.36  Aligned_cols=202  Identities=22%  Similarity=0.191  Sum_probs=151.7

Q ss_pred             CCCCccEEEeeCCcccccCCccc--cCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCcccccccCCCCCC
Q 044855           17 HLTHLKVLDIFNNQLSGNFPSTL--TNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNMLQVKTESWHP   91 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   91 (279)
                      .+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+   ...+..+++|++|++++|.. ...+...+..
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~  167 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRA  167 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhcc
Confidence            45779999999999998888877  889999999999999875333   23445789999999998874 5666677889


Q ss_pred             CCceeEEEecCCcCcc---cC--hhhhcCCCccEEEeeCCcccccCCCCCcCcc-hhhccCcccceeccCC-----CCcc
Q 044855           92 TSQLKVLKLSDCQLHV---IP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDD-GLRSSTSLEGLDISGN-----IPNW  160 (279)
Q Consensus        92 ~~~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~-----~~~~  160 (279)
                      +++|++|++++|.+..   ++  ..+..+++|++|++++|.+....    .... .+..+++|++|++++|     .|..
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT----GVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----HHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----HHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            9999999999998632   32  23357899999999999875211    1111 2467899999999988     2444


Q ss_pred             ccCC---CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855          161 IGNI---STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN  237 (279)
Q Consensus       161 ~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  237 (279)
                      +..+   ++|++|++++|.++. +|..+.  ++|+              .|++++|++.+. +. +..+++|+.|++++|
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~--------------~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLR--------------VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCS--------------CEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred             HHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCC--------------EEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence            5555   699999999999986 555442  4555              555555555543 32 577899999999999


Q ss_pred             ccccc
Q 044855          238 SLQGH  242 (279)
Q Consensus       238 ~~~~~  242 (279)
                      ++++.
T Consensus       305 ~l~~~  309 (310)
T 4glp_A          305 PFLVP  309 (310)
T ss_dssp             TTSCC
T ss_pred             CCCCC
Confidence            99753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=3e-21  Score=159.08  Aligned_cols=225  Identities=18%  Similarity=0.228  Sum_probs=164.5

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCccccc-CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN-FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      ++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ .....+..+++|++|++++|.
T Consensus        76 ~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B           76 RCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             ECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCB
T ss_pred             EcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCC
Confidence            3677888866555 55799999999999998755 77788999999999999998863 334567789999999999984


Q ss_pred             cccc-ccCCCCCCCCceeEEEecCC-cCcc--cChhhhcCC-CccEEEeeCCc--ccccCCCCCcCcchhhccCccccee
Q 044855           80 NMLQ-VKTESWHPTSQLKVLKLSDC-QLHV--IPSFLLQQD-HLKFLDLSHNK--LVGNFPICGKMDDGLRSSTSLEGLD  152 (279)
Q Consensus        80 ~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~  152 (279)
                      .... .....+..+++|++|++++| .++.  ++..+..++ +|++|++++|.  +.+     ..++..+..+++|++|+
T Consensus       154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-----~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-----SDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----HHHHHHHHHCTTCSEEE
T ss_pred             CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-----HHHHHHHhhCCCCCEEe
Confidence            3332 23344677899999999999 8854  667788899 99999999995  321     13345677899999999


Q ss_pred             ccCCC------CccccCCCCCcEEEccccE-eeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhc
Q 044855          153 ISGNI------PNWIGNISTLRVLLMSKNY-LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINE  225 (279)
Q Consensus       153 l~~~~------~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  225 (279)
                      ++++.      +..+..+++|+.|++++|. +.......+..+++|+.|++++| ++              +.....+. 
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~--------------~~~~~~l~-  292 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP--------------DGTLQLLK-  292 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC--------------TTCHHHHH-
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC--------------HHHHHHHH-
Confidence            99873      3456788999999999994 33322335677787777766655 22              22222222 


Q ss_pred             CcCCcEEEccCCcccccCChhhhc
Q 044855          226 LSNLHVLLLRGNSLQGHIPNELCQ  249 (279)
Q Consensus       226 ~~~L~~L~l~~n~~~~~~~~~~~~  249 (279)
                       ..+..|++++|.+++..|..+..
T Consensus       293 -~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          293 -EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             -HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -hhCcceEEecccCccccCCcccc
Confidence             23555567888888776665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=3.3e-19  Score=140.90  Aligned_cols=178  Identities=22%  Similarity=0.268  Sum_probs=98.2

Q ss_pred             CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855           20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK   99 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   99 (279)
                      ..++++++++.++ .+|..+.  +++++|++++|.+. ......+..+++|++|++++|. +...+...+..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence            4456666666665 4444332  46666666666665 3333455666666666666654 3334445566667777777


Q ss_pred             ecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEee
Q 044855          100 LSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE  178 (279)
Q Consensus       100 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~  178 (279)
                      +++|.++.++. .+..+++|+.|++++|.+....                         +..+..+++|+.|++++|.++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------------------~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-------------------------SGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-------------------------hhHhccCCcccEEECcCCcCC
Confidence            77777765553 3456677777777776654211                         122344555666666666655


Q ss_pred             eeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccc
Q 044855          179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQG  241 (279)
Q Consensus       179 ~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (279)
                      ...+..+..+++|+.|++++|.              +.+..+..+..+++|+.|++++|++..
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQ--------------LQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC--------------CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ccCHHHcCcCcCCCEEECCCCc--------------CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            5444445555544443333332              333334455555666666666666553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=7.7e-22  Score=165.77  Aligned_cols=241  Identities=16%  Similarity=0.158  Sum_probs=161.1

Q ss_pred             EeeCCcccccCCccccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCccc--c-cccC------CCCCCC
Q 044855           25 DIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNM--L-QVKT------ESWHPT   92 (279)
Q Consensus        25 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~--~-~~~~------~~~~~~   92 (279)
                      .+....+. .++..+..+++|++|++++|.+.....   ...+..+++|++|++++|...  . .++.      ..+..+
T Consensus        15 ~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~   93 (386)
T 2ca6_A           15 AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC   93 (386)
T ss_dssp             SCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred             CCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence            33333433 566778889999999999998874322   123668899999999886321  1 1111      123678


Q ss_pred             CceeEEEecCCcCcc-----cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhcc---------CcccceeccCCCC
Q 044855           93 SQLKVLKLSDCQLHV-----IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSS---------TSLEGLDISGNIP  158 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---------~~L~~l~l~~~~~  158 (279)
                      ++|++|++++|.+..     ++..+..+++|+.|++++|.+....+  ..+...+..+         ++|++|++++|-.
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--AKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH--HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH--HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            999999999998854     66778889999999999998753221  1122233333         6777777776632


Q ss_pred             ---------ccccCCCCCcEEEccccEeee-----eccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhh
Q 044855          159 ---------NWIGNISTLRVLLMSKNYLEA-----NIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN  224 (279)
Q Consensus       159 ---------~~~~~~~~L~~L~l~~~~l~~-----~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~  224 (279)
                               ..+..+++|+.|++++|.++.     ..+..+..+++|+.|++++|.+...          -...++..+.
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----------g~~~l~~~l~  241 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----------GSSALAIALK  241 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----------HHHHHHHHGG
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----------HHHHHHHHHc
Confidence                     234456677777777777652     1222555666666555554443210          0034566788


Q ss_pred             cCcCCcEEEccCCccccc----CChhhhc--ccCCcEEEccCCEeee----ecCccc-cCCcccc
Q 044855          225 ELSNLHVLLLRGNSLQGH----IPNELCQ--LAKLRIMDLSNNIFSG----SIPSCL-GNVSFWR  278 (279)
Q Consensus       225 ~~~~L~~L~l~~n~~~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~p~~~-~~~~~l~  278 (279)
                      .+++|+.|++++|.+++.    ++..+..  +++|+.|++++|.+++    .+|..+ .+++.|+
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence            899999999999999866    4555533  8999999999999997    488766 5566654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=4.6e-19  Score=146.83  Aligned_cols=119  Identities=17%  Similarity=0.290  Sum_probs=74.8

Q ss_pred             CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855            4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ   83 (279)
Q Consensus         4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   83 (279)
                      ++.++ .+|..+  .+++++|+|++|+++...+.+|.++++|++|++++|.+.+.++...+.+++++..+....+..+..
T Consensus        18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   94 (350)
T ss_dssp             STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred             CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence            44555 444444  256777788777777444456777777888888777766555556666776666544443334556


Q ss_pred             ccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeC
Q 044855           84 VKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSH  125 (279)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~  125 (279)
                      ++...|..+++|++|++++|.+..++. ......++..+++.+
T Consensus        95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~  137 (350)
T 4ay9_X           95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD  137 (350)
T ss_dssp             ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred             cCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence            666667777777777777777766554 233445566666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=3.6e-19  Score=140.71  Aligned_cols=175  Identities=22%  Similarity=0.224  Sum_probs=124.4

Q ss_pred             ccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccC
Q 044855           68 SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSST  146 (279)
Q Consensus        68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  146 (279)
                      ...+.++++++. ...++...   .++++.|++++|.+..++. .+..+++|++|++++|.+.+..      +..+..++
T Consensus        14 ~~~~~l~~~~~~-l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~   83 (251)
T 3m19_A           14 EGKKEVDCQGKS-LDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS------AGVFDDLT   83 (251)
T ss_dssp             GGGTEEECTTCC-CSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC------TTTTTTCT
T ss_pred             CCCeEEecCCCC-ccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC------HhHhccCC
Confidence            345667776554 33444322   2578899999998876654 5777888999999988876322      24456667


Q ss_pred             cccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCch
Q 044855          147 SLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPY  221 (279)
Q Consensus       147 ~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~  221 (279)
                      +|++|+++++     .+..+..+++|+.|++++|.++...+..+..+++|+              .|++++|++.+..+.
T Consensus        84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--------------~L~Ls~N~l~~~~~~  149 (251)
T 3m19_A           84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK--------------ELRLNTNQLQSIPAG  149 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC--------------EEECCSSCCCCCCTT
T ss_pred             cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc--------------EEECcCCcCCccCHH
Confidence            7777777665     123455667777777777776664444455555555              555555656556666


Q ss_pred             hhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855          222 QINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  266 (279)
                      .+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            788999999999999999977787899999999999999999865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=4.4e-19  Score=144.35  Aligned_cols=180  Identities=19%  Similarity=0.267  Sum_probs=131.7

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      +++++.+.. ++ ++..+++|++|++++|.+++ .+. +..+++|++|++++|.+.+.   ..+..+++|++|++++|..
T Consensus        47 ~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~l~~n~l  119 (308)
T 1h6u_A           47 SAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQI  119 (308)
T ss_dssp             ECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC---GGGTTCTTCCEEECTTSCC
T ss_pred             EeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc---hhhcCCCCCCEEECCCCCC
Confidence            367888875 34 68999999999999999984 444 89999999999999998743   3688899999999999874


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC--
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP--  158 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--  158 (279)
                      . .++  .+..+++|++|++++|.+..++. +..+++|+.|++++|.+.+       +.. +..+++|+.|+++++-.  
T Consensus       120 ~-~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          120 T-DVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-------LTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             C-CCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             C-Cch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-------Chh-hcCCCCCCEEECCCCccCc
Confidence            3 333  37889999999999999988775 7889999999999998762       112 55566666666665521  


Q ss_pred             -ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcC
Q 044855          159 -NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSL  201 (279)
Q Consensus       159 -~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~  201 (279)
                       ..+..+++|+.|++++|.+++..  .+..+++|+.|++++|.+
T Consensus       188 ~~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          188 ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CGGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred             ChhhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence             12445566666666666665532  245555555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=9.3e-21  Score=157.77  Aligned_cols=228  Identities=18%  Similarity=0.164  Sum_probs=160.7

Q ss_pred             CCCCCcCcCCCC----ccccCCC-CccEEEeeCCcccccCCccccCC-----CcCcEEeccCcccCcccch---hhhccc
Q 044855            1 DLSSNNFEGHLP----QCLNHLT-HLKVLDIFNNQLSGNFPSTLTNF-----TSLEYLDLSSINFQGTFSI---NSLANH   67 (279)
Q Consensus         1 ~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~---~~~~~~   67 (279)
                      ||++|.+++..+    .++..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+.+....   ..+..+
T Consensus        28 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~  107 (362)
T 3goz_A           28 DLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI  107 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             EccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhC
Confidence            588999998777    7888999 99999999999997777777665     9999999999998743321   124445


Q ss_pred             -ccceeeeecCCcccccccCC----CCCC-CCceeEEEecCCcCc-----ccChhhhcCC-CccEEEeeCCcccccCCCC
Q 044855           68 -SKLEVLLLSSGSNMLQVKTE----SWHP-TSQLKVLKLSDCQLH-----VIPSFLLQQD-HLKFLDLSHNKLVGNFPIC  135 (279)
Q Consensus        68 -~~L~~L~l~~~~~~~~~~~~----~~~~-~~~L~~L~l~~~~~~-----~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~  135 (279)
                       ++|++|++++|... .....    .+.. .++|++|++++|.++     .++..+...+ +|++|++++|.+.+..+  
T Consensus       108 ~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~--  184 (362)
T 3goz_A          108 PFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC--  184 (362)
T ss_dssp             CTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--
T ss_pred             CCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH--
Confidence             89999999999743 33222    2333 369999999999986     3445556665 89999999998874432  


Q ss_pred             CcCcchhhcc-CcccceeccCCCCc---------cccC-CCCCcEEEccccEeeeeccc----cccCCCCccEEeccCCc
Q 044855          136 GKMDDGLRSS-TSLEGLDISGNIPN---------WIGN-ISTLRVLLMSKNYLEANIPV----QLNHLKSLELIDIFENS  200 (279)
Q Consensus       136 ~~~~~~~~~~-~~L~~l~l~~~~~~---------~~~~-~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~l~l~~~~  200 (279)
                      ..+...+... ++|++|++++|-..         .+.. .++|+.|++++|.++...+.    .+..+++|+.       
T Consensus       185 ~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~-------  257 (362)
T 3goz_A          185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT-------  257 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE-------
T ss_pred             HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE-------
Confidence            1223344555 59999999988322         2333 46999999999998874442    3345555555       


Q ss_pred             CcccceEEEeecCccCCC-------CchhhhcCcCCcEEEccCCcccccCCh
Q 044855          201 LSSKLITLDLRDNKFFGR-------IPYQINELSNLHVLLLRGNSLQGHIPN  245 (279)
Q Consensus       201 ~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~n~~~~~~~~  245 (279)
                             |++++|.+.+.       ++..+..+++|+.|++++|++.+..+.
T Consensus       258 -------L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          258 -------VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             -------EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             -------EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence                   45555543222       223455678889999999998765333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=9.1e-21  Score=167.71  Aligned_cols=116  Identities=14%  Similarity=0.105  Sum_probs=70.2

Q ss_pred             CCCCCcEEEccccEeeeeccccccC-CCCccEEecc----CCcCcc---------------cceEEEeecCc--cCCCCc
Q 044855          163 NISTLRVLLMSKNYLEANIPVQLNH-LKSLELIDIF----ENSLSS---------------KLITLDLRDNK--FFGRIP  220 (279)
Q Consensus       163 ~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~l~l~----~~~~~~---------------~L~~L~l~~~~--~~~~~~  220 (279)
                      .+++|+.|++..+.++...+..+.. +++|+.|+++    .+.+++               +|+.|+++.|.  +++...
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            3566666666555555433434433 6677777764    233321               67777776543  333333


Q ss_pred             hhh-hcCcCCcEEEccCCccccc-CChhhhcccCCcEEEccCCEeeee-cCccccCCcccc
Q 044855          221 YQI-NELSNLHVLLLRGNSLQGH-IPNELCQLAKLRIMDLSNNIFSGS-IPSCLGNVSFWR  278 (279)
Q Consensus       221 ~~~-~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~l~  278 (279)
                      ..+ ..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. ++.....++.|+
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  516 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR  516 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence            333 3478888888888888764 344556788899999999987654 333334555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1e-18  Score=152.50  Aligned_cols=190  Identities=24%  Similarity=0.342  Sum_probs=111.0

Q ss_pred             CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855           20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK   99 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   99 (279)
                      +++.|++++|.+++ +|..+  .++|++|++++|.+. .++    ..+++|++|++++|... .++.  +..  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEE
Confidence            78888888888874 55544  377888888888776 333    44677888888777543 3443  333  788888


Q ss_pred             ecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEcccc
Q 044855          100 LSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKN  175 (279)
Q Consensus       100 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~  175 (279)
                      +++|.++.+|.   .+++|+.|++++|.+.+.       +.   .+++|+.|++++|    +|. +.  ++|+.|++++|
T Consensus       127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-------p~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          127 VDNNQLTMLPE---LPALLEYINADNNQLTML-------PE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CCSSCCSCCCC---CCTTCCEEECCSSCCSCC-------CC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred             CCCCcCCCCCC---cCccccEEeCCCCccCcC-------CC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence            88887777776   567788888888776521       11   2344555555544    222 22  44555555555


Q ss_pred             EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcc
Q 044855          176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL  250 (279)
Q Consensus       176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  250 (279)
                      .++. +|. +..  +|       ......|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus       191 ~L~~-lp~-~~~--~L-------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          191 LLES-LPA-VPV--RN-------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCSS-CCC-CC-----------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CCCc-hhh-HHH--hh-------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            4443 222 211  11       000001255666666654 355555567777777777777766666665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=2e-20  Score=165.51  Aligned_cols=261  Identities=15%  Similarity=0.078  Sum_probs=148.8

Q ss_pred             CCCCccEEEeeCCcccccCCccccC-CCc-CcEEeccCccc-CcccchhhhcccccceeeeecCCcccccc---cCCCCC
Q 044855           17 HLTHLKVLDIFNNQLSGNFPSTLTN-FTS-LEYLDLSSINF-QGTFSINSLANHSKLEVLLLSSGSNMLQV---KTESWH   90 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~   90 (279)
                      .+++|++|++++|.+++..+..+.. +++ |++|++++|.. ...........+++|++|++++|......   ......
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5677777777777665444444433 333 66666666641 11111122235667777777666431110   011223


Q ss_pred             CCCceeEEEecCCcCc-----ccChhhhcCCCccEEEeeCCcccccC--------------------CCCCcCcchhhcc
Q 044855           91 PTSQLKVLKLSDCQLH-----VIPSFLLQQDHLKFLDLSHNKLVGNF--------------------PICGKMDDGLRSS  145 (279)
Q Consensus        91 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~~~~~~  145 (279)
                      .+++|++|+++++.+.     .++..+..+++|+.|++++|.+.+..                    .........+..+
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            4556666666666553     22333445666666666665543100                    0001112233444


Q ss_pred             CcccceeccCC----CCccccCCCCCcEEEccccEeeeecc-ccccCCCCccEEeccCCcCc-----------ccceEEE
Q 044855          146 TSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIP-VQLNHLKSLELIDIFENSLS-----------SKLITLD  209 (279)
Q Consensus       146 ~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~-----------~~L~~L~  209 (279)
                      ++|+.+++++.    ++..+..+++|++|++++|.++.... ..+..+++|+.|+++++ +.           .+|++|+
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEE
Confidence            55555555433    34455667888888888887654322 34578888888888733 22           2789999


Q ss_pred             eec-----------CccCCCCc-hhhhcCcCCcEEEccCCcccccCChhhhc-ccCCcEEEcc----CCEeeee-----c
Q 044855          210 LRD-----------NKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCQ-LAKLRIMDLS----NNIFSGS-----I  267 (279)
Q Consensus       210 l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~  267 (279)
                      +++           +.+++... .....+++|+.|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     +
T Consensus       349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~  428 (592)
T 3ogk_B          349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV  428 (592)
T ss_dssp             EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred             eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence            983           44443322 22356899999999888888777777765 8899999996    5567642     3


Q ss_pred             CccccCCcccc
Q 044855          268 PSCLGNVSFWR  278 (279)
Q Consensus       268 p~~~~~~~~l~  278 (279)
                      +..+..++.|+
T Consensus       429 ~~~~~~~~~L~  439 (592)
T 3ogk_B          429 RSLLIGCKKLR  439 (592)
T ss_dssp             HHHHHHCTTCC
T ss_pred             HHHHHhCCCCC
Confidence            33455566554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=3.5e-18  Score=150.58  Aligned_cols=175  Identities=21%  Similarity=0.254  Sum_probs=106.9

Q ss_pred             ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855           15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ   94 (279)
Q Consensus        15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~   94 (279)
                      +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+   +..+++|+.|++++|... .+  ..+..+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~l--~~l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIK-DL--SSLKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCC-CC--TTSTTCTT
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCC-CC--hhhccCCC
Confidence            345666777777777665 333 36667777777777776653221   556666666666665432 22  13555666


Q ss_pred             eeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccc
Q 044855           95 LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSK  174 (279)
Q Consensus        95 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~  174 (279)
                      |+.|++++|.+..++ .+..+++|+.|++++|.+.+                           ...+..+++|+.|++++
T Consensus       111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~---------------------------l~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A          111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD---------------------------ITVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC---------------------------CGGGGSCTTCSEEECCS
T ss_pred             CCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC---------------------------chhhcccCCCCEEECcC
Confidence            666666666665543 35556666666666655431                           13456677888888888


Q ss_pred             cEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855          175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI  243 (279)
Q Consensus       175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (279)
                      |.+.+..+  +..+++|+.|++++|.+.              + + ..+..+++|+.|++++|++.+..
T Consensus       163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~--------------~-l-~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          163 NQISDIVP--LAGLTKLQNLYLSKNHIS--------------D-L-RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCC--------------B-C-GGGTTCTTCSEEECCSEEEECCC
T ss_pred             CcCCCchh--hccCCCCCEEECcCCCCC--------------C-C-hHHccCCCCCEEEccCCcCcCCc
Confidence            88776444  666776666555555433              2 2 24677888888888888877543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=3.5e-18  Score=137.88  Aligned_cols=106  Identities=22%  Similarity=0.240  Sum_probs=71.5

Q ss_pred             ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855           15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ   94 (279)
Q Consensus        15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~   94 (279)
                      ++.+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+   +..+++|++|++++|... ..+  .+..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVK-DLS--SLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC-CGG--GGTTCTT
T ss_pred             hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCC-CCh--hhccCCC
Confidence            356777888888888776 333 36777888888888887763222   667777777777776532 222  2566777


Q ss_pred             eeEEEecCCcCcccChhhhcCCCccEEEeeCCccc
Q 044855           95 LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        95 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  129 (279)
                      |++|++++|.+..+ ..+..+++|+.|++++|.+.
T Consensus       114 L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A          114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             CCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCC
Confidence            77777777777665 34566777777777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=6e-18  Score=136.50  Aligned_cols=84  Identities=18%  Similarity=0.256  Sum_probs=56.1

Q ss_pred             ccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCc
Q 044855           39 LTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHL  118 (279)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  118 (279)
                      +..+++|++|++++|.+...   ..+..+++|+.|++++|... .++.  +..+++|++|++++|.+..++. +..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred             hhhcCcccEEEccCCCcccC---hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence            45677788888888776532   24666777777777776533 2222  5667777777777777766553 6667777


Q ss_pred             cEEEeeCCccc
Q 044855          119 KFLDLSHNKLV  129 (279)
Q Consensus       119 ~~L~l~~~~~~  129 (279)
                      +.|++++|.+.
T Consensus       115 ~~L~L~~n~i~  125 (291)
T 1h6t_A          115 KSLSLEHNGIS  125 (291)
T ss_dssp             CEEECTTSCCC
T ss_pred             CEEECCCCcCC
Confidence            77777777655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=2.9e-18  Score=131.62  Aligned_cols=158  Identities=23%  Similarity=0.263  Sum_probs=114.2

Q ss_pred             CCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----C-CccccCCC
Q 044855           92 TSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----I-PNWIGNIS  165 (279)
Q Consensus        92 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~-~~~~~~~~  165 (279)
                      .++|++|++++|.++.++.. +..+++|++|++++|.+....      ...+..+++|++|+++++    + +..+..++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  100 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP------NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT  100 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC------hhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence            45899999999998877764 567899999999998876322      234566777777777766    1 22345667


Q ss_pred             CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCCh
Q 044855          166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN  245 (279)
Q Consensus       166 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  245 (279)
                      +|++|++++|.++...+..+..+++|+.              |++++|++.+..+..+..+++|+.|++++|++.     
T Consensus       101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~--------------L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A          101 QLKELALNTNQLQSLPDGVFDKLTQLKD--------------LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCE--------------EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             CCCEEEcCCCcCcccCHhHhccCCcCCE--------------EECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence            7777777777776644445566665554              455555555555556788899999999999876     


Q ss_pred             hhhcccCCcEEEccCCEeeeecCccccCCcc
Q 044855          246 ELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF  276 (279)
Q Consensus       246 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  276 (279)
                        +.++.|+.|++..|.++|.+|+.++.++.
T Consensus       162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence              35677889999999999999988887753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=7e-18  Score=129.45  Aligned_cols=172  Identities=23%  Similarity=0.213  Sum_probs=121.0

Q ss_pred             CCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855            3 SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML   82 (279)
Q Consensus         3 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   82 (279)
                      +++.+. .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|++|++++|. +.
T Consensus        15 ~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~   89 (208)
T 2o6s_A           15 YSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQ   89 (208)
T ss_dssp             CSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred             cCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc-CC
Confidence            455555 334333  468999999999998666667888999999999999887 4555667888999999998886 44


Q ss_pred             cccCCCCCCCCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855           83 QVKTESWHPTSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI  161 (279)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  161 (279)
                      .++...+..+++|++|++++|.+..++.. +..+++|+.|++++|.+.+..      ...+..+++|+.++++++  .+.
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~------~~~~~~l~~L~~L~l~~N--~~~  161 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP------DGVFDRLTSLQYIWLHDN--PWD  161 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSC--CBC
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC------HHHhccCCCccEEEecCC--Cee
Confidence            56666678889999999999988777664 567889999999998776322      233455566666666655  223


Q ss_pred             cCCCCCcEEEccccEeeeeccccccC
Q 044855          162 GNISTLRVLLMSKNYLEANIPVQLNH  187 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~l~~~~~~~l~~  187 (279)
                      +.+++|+.|+++.|.+++..|..++.
T Consensus       162 ~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          162 CTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             cCCCCHHHHHHHHHhCCceeeccCcc
Confidence            44555666666666555555544443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=1.7e-17  Score=126.16  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             cccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855           65 ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS  144 (279)
Q Consensus        65 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  144 (279)
                      ..+++|+.|+++++... .++  .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+.             
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~-------------  103 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSD-------------  103 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGG-------------
T ss_pred             hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcc-------------
Confidence            33445555555544322 222  2444555555555555443332 344455555555555444311             


Q ss_pred             cCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhh
Q 044855          145 STSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN  224 (279)
Q Consensus       145 ~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~  224 (279)
                                  .+..++.+++|+.|++++|.++...+..+..+++|+.|++++|..             + ..++ .+.
T Consensus       104 ------------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~-------------i-~~~~-~l~  156 (197)
T 4ezg_A          104 ------------KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-------------I-TDIM-PLK  156 (197)
T ss_dssp             ------------GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB-------------C-CCCG-GGG
T ss_pred             ------------cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC-------------c-cccH-hhc
Confidence                        244567788888888888888776667777777777666655541             2 2344 678


Q ss_pred             cCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855          225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       225 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  265 (279)
                      .+++|+.|++++|++++ .+ .+..+++|+.|++++|++.+
T Consensus       157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            89999999999999985 33 78889999999999999863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.75  E-value=2.2e-20  Score=165.28  Aligned_cols=89  Identities=17%  Similarity=0.080  Sum_probs=44.1

Q ss_pred             cCCCCccEEEeeCCcccccCCcccc-CCCcCcEEeccCc-ccCcccchhhhcccccceeeeecCCcccccc---cCCCCC
Q 044855           16 NHLTHLKVLDIFNNQLSGNFPSTLT-NFTSLEYLDLSSI-NFQGTFSINSLANHSKLEVLLLSSGSNMLQV---KTESWH   90 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~   90 (279)
                      ..+++|++|++++|.+++..+..+. .+++|++|++++| .+...........+++|++|++++|......   ......
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            3566666676666666544444443 4666666666666 3321111222335666666666655421111   111223


Q ss_pred             CCCceeEEEecCCc
Q 044855           91 PTSQLKVLKLSDCQ  104 (279)
Q Consensus        91 ~~~~L~~L~l~~~~  104 (279)
                      .+++|++|++++|.
T Consensus       182 ~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          182 TYTSLVSLNISCLA  195 (594)
T ss_dssp             TCCCCCEEECTTCC
T ss_pred             cCCcCcEEEecccC
Confidence            44555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.8e-17  Score=128.19  Aligned_cols=134  Identities=24%  Similarity=0.309  Sum_probs=91.8

Q ss_pred             CceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEE
Q 044855           93 SQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLL  171 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~  171 (279)
                      ++++.|++++|.++.++. .+..+++|+.|++++|.+...                         .+..|..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-------------------------~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-------------------------APDAFQGLRSLNSLV   86 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------------------------CTTTTTTCSSCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------------------------CHHHhhCCcCCCEEE
Confidence            345555555555544443 344445555555555544311                         245677778888888


Q ss_pred             ccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhccc
Q 044855          172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLA  251 (279)
Q Consensus       172 l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  251 (279)
                      +++|.++...+..+..+++|+.|++              ++|++.+..+..|..+++|+.|++++|.+++..+..+..++
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L--------------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLL--------------NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR  152 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEEC--------------CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             CCCCcCCccCHhHccCCCCCCEEEC--------------CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence            8888888755555677776665554              55555566677888899999999999999877777788899


Q ss_pred             CCcEEEccCCEeee
Q 044855          252 KLRIMDLSNNIFSG  265 (279)
Q Consensus       252 ~L~~L~l~~n~l~~  265 (279)
                      +|+.|++++|++..
T Consensus       153 ~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          153 AIQTMHLAQNPFIC  166 (220)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             CCCEEEeCCCCcCC
Confidence            99999999999873

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=3.2e-17  Score=143.08  Aligned_cols=167  Identities=26%  Similarity=0.360  Sum_probs=128.4

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ ++.  +..  +|++|++++|..
T Consensus        65 ~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           65 QLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             ECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCC
T ss_pred             EeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcC
Confidence            578899986 55544  388999999999999 677   457999999999999985 443  433  999999999874


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----  156 (279)
                      . .++.    .+++|++|++++|.++.+|.   .+++|+.|++++|.+.+       ++. +.  ++|+.|++++|    
T Consensus       133 ~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-------lp~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          133 T-MLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-------LPE-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             S-CCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-------CCC-CC--TTCCEEECCSSCCSS
T ss_pred             C-CCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-------cch-hh--CCCCEEECcCCCCCc
Confidence            3 3444    57899999999999988887   57899999999999874       222 33  89999999988    


Q ss_pred             CCccccCCCCC-------cEEEccccEeeeeccccccCCCCccEEeccCCcC
Q 044855          157 IPNWIGNISTL-------RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSL  201 (279)
Q Consensus       157 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~  201 (279)
                      +|. +..  +|       +.|++++|.++. +|..+..+++|+.|++++|.+
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSC
T ss_pred             hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcC
Confidence            333 332  66       999999999987 677676787777665555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=4.2e-17  Score=135.03  Aligned_cols=228  Identities=15%  Similarity=0.128  Sum_probs=161.5

Q ss_pred             cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE-EEe
Q 044855           22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV-LKL  100 (279)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l  100 (279)
                      ++++-++++++ .+|..+  .+++++|++++|.++ .++...+.++++|++|++++|.....++..+|..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888888 677655  368999999999997 6777789999999999999998777788888999988776 556


Q ss_pred             cCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----C-CccccCC-CCCcEEEc
Q 044855          101 SDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----I-PNWIGNI-STLRVLLM  172 (279)
Q Consensus       101 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~-~~~~~~~-~~L~~L~l  172 (279)
                      .+|.+..++ ..+..+++|+.|++++|.+....+      ..+.....+..+++.++     + ...+..+ ..++.|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCc------hhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            678888885 466789999999999998863322      23344555666666543     1 1233333 45777888


Q ss_pred             cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeec-CccCCCCchhhhcCcCCcEEEccCCcccccCChhhhccc
Q 044855          173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRD-NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLA  251 (279)
Q Consensus       173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  251 (279)
                      ++|.++...+..+ ...+|+              .+++.+ |.+....+.+|..+++|+.|++++|+++...+..   +.
T Consensus       162 ~~N~i~~i~~~~f-~~~~L~--------------~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~  223 (350)
T 4ay9_X          162 NKNGIQEIHNSAF-NGTQLD--------------ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LE  223 (350)
T ss_dssp             CSSCCCEECTTSS-TTEEEE--------------EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CT
T ss_pred             ccccccCCChhhc-cccchh--------------HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hc
Confidence            8888776444333 333444              455543 3343333457889999999999999999544444   45


Q ss_pred             CCcEEEccCCEeeeecCccccCCcccc
Q 044855          252 KLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       252 ~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      +|+.|.+.++.-...+|. +..++.|+
T Consensus       224 ~L~~L~~l~~~~l~~lP~-l~~l~~L~  249 (350)
T 4ay9_X          224 NLKKLRARSTYNLKKLPT-LEKLVALM  249 (350)
T ss_dssp             TCCEEECTTCTTCCCCCC-TTTCCSCC
T ss_pred             cchHhhhccCCCcCcCCC-chhCcChh
Confidence            677777777765558884 66666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=5.4e-17  Score=125.54  Aligned_cols=96  Identities=21%  Similarity=0.195  Sum_probs=75.0

Q ss_pred             ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855          159 NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS  238 (279)
Q Consensus       159 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  238 (279)
                      ..+..+++|+.|++++|.++...+..+..+++|+.|++++              |++.+..+..+..+++|+.|++++|+
T Consensus        75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~--------------N~l~~~~~~~~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A           75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS--------------NRITCVGNDSFIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT--------------SCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred             HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC--------------CcCCeECHhHcCCCccCCEEECCCCc
Confidence            3567788888888888888876666677777777555554              44555667778888999999999999


Q ss_pred             ccccCChhhhcccCCcEEEccCCEeeeecC
Q 044855          239 LQGHIPNELCQLAKLRIMDLSNNIFSGSIP  268 (279)
Q Consensus       239 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  268 (279)
                      +++..+..+..+++|+.|++++|++.+..+
T Consensus       141 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          141 ITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            987778888889999999999999875443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=1.3e-16  Score=121.33  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      +.+++|++|++++|.++ .++ .+..+++|++|++++|.+..   ...+..+++|++|++++|.... .....+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCc-ccChhhcCCCCC
Confidence            44566666666666655 334 45566666666666664431   1234445555555555443221 112234444455


Q ss_pred             eEEEecCCcCcc-cChhhhcCCCccEEEeeCCc
Q 044855           96 KVLKLSDCQLHV-IPSFLLQQDHLKFLDLSHNK  127 (279)
Q Consensus        96 ~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~  127 (279)
                      ++|++++|.+.. .+..+..+++|++|++++|.
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            555555444432 23334444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.4e-16  Score=122.62  Aligned_cols=148  Identities=20%  Similarity=0.260  Sum_probs=110.5

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      .+++.+. .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|. +
T Consensus        26 c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~-l  100 (229)
T 3e6j_A           26 CRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ-L  100 (229)
T ss_dssp             CTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             ccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCc-C
Confidence            4556666 4444333  78889999999888777788888899999999988886 5555667788888888888875 4


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI  161 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  161 (279)
                      ..++...+..+++|++|++++|.+..+|..+..+++|+.|++++|.+....                         +..+
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-------------------------~~~~  155 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP-------------------------HGAF  155 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-------------------------TTTT
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC-------------------------HHHH
Confidence            466666678888888888888888888888888888888888888775221                         1345


Q ss_pred             cCCCCCcEEEccccEeee
Q 044855          162 GNISTLRVLLMSKNYLEA  179 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~l~~  179 (279)
                      ..+++|+.|++++|.+..
T Consensus       156 ~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          156 DRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTCTTCCEEECTTSCBCT
T ss_pred             hCCCCCCEEEeeCCCccC
Confidence            566777777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=3.5e-16  Score=137.83  Aligned_cols=163  Identities=22%  Similarity=0.223  Sum_probs=131.7

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ++++|.+... + .++.+++|+.|+|++|.+.+..+  +..+++|++|++++|.+.+ .  ..+..+++|+.|++++|..
T Consensus        49 ~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l  121 (605)
T 1m9s_A           49 IANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L--SSLKDLKKLKSLSLEHNGI  121 (605)
T ss_dssp             BCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--TTSTTCTTCCEEECTTSCC
T ss_pred             ECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C--hhhccCCCCCEEEecCCCC
Confidence            4677888744 3 58999999999999999985443  8899999999999999874 2  3688899999999999875


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---  157 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---  157 (279)
                      .. +  ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+.       .. +..+++|+.|++++|-   
T Consensus       122 ~~-l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~-------~~-l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          122 SD-I--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CC-C--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCB
T ss_pred             CC-C--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc-------hh-hccCCCCCEEECcCCCCCC
Confidence            43 3  3478899999999999999887 6788999999999999988632       22 7778888899888872   


Q ss_pred             CccccCCCCCcEEEccccEeeeecc
Q 044855          158 PNWIGNISTLRVLLMSKNYLEANIP  182 (279)
Q Consensus       158 ~~~~~~~~~L~~L~l~~~~l~~~~~  182 (279)
                      ...+..+++|+.|++++|.+.....
T Consensus       190 l~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          190 LRALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred             ChHHccCCCCCEEEccCCcCcCCcc
Confidence            2346778888899998888876433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=2e-18  Score=152.81  Aligned_cols=243  Identities=13%  Similarity=0.123  Sum_probs=127.7

Q ss_pred             ccccCCCCccEEEeeCCcccc---cCC------------ccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecC
Q 044855           13 QCLNHLTHLKVLDIFNNQLSG---NFP------------STLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSS   77 (279)
Q Consensus        13 ~~~~~l~~L~~L~l~~~~~~~---~~~------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   77 (279)
                      ..+..+++|++|++.++....   ..|            ..+..+++|++|++++|.+.+.........+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            345677888888888764221   111            12345778888888888765333222223577888888877


Q ss_pred             Ccccccc-cCCCCCCCCceeEEEecCCcCcc-----cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccce
Q 044855           78 GSNMLQV-KTESWHPTSQLKVLKLSDCQLHV-----IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL  151 (279)
Q Consensus        78 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l  151 (279)
                      |...... .......+++|++|++++|.+..     ++.....+++|+.|+++++. . ... ...+......+++|+.|
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~-~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVS-FSALERLVTRCPNLKSL  216 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCC-HHHHHHHHHHCTTCCEE
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCC-HHHHHHHHHhCCCCcEE
Confidence            7433221 22223467788888888776532     22223355677777777664 0 000 00111122334555555


Q ss_pred             eccCC-----CCcccc------------------------------------------------------CCCCCcEEEc
Q 044855          152 DISGN-----IPNWIG------------------------------------------------------NISTLRVLLM  172 (279)
Q Consensus       152 ~l~~~-----~~~~~~------------------------------------------------------~~~~L~~L~l  172 (279)
                      +++++     ++..+.                                                      .+++|+.|++
T Consensus       217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L  296 (594)
T 2p1m_B          217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL  296 (594)
T ss_dssp             ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEEC
T ss_pred             ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEc
Confidence            55544     111122                                                      3455666666


Q ss_pred             cccEeeeec-cccccCCCCccEEeccCCcCc-----------ccceEEEeec---------CccCCCCchhh-hcCcCCc
Q 044855          173 SKNYLEANI-PVQLNHLKSLELIDIFENSLS-----------SKLITLDLRD---------NKFFGRIPYQI-NELSNLH  230 (279)
Q Consensus       173 ~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~-----------~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~  230 (279)
                      ++|.++... ...+..+++|+.|++.+| +.           .+|+.|++.+         +.+++.....+ ..+++|+
T Consensus       297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~  375 (594)
T 2p1m_B          297 SYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE  375 (594)
T ss_dssp             TTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred             cCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence            665543321 122345566666666655 21           1566666633         22222212222 2366777


Q ss_pred             EEEccCCcccccCChhhh-cccCCcEEEcc
Q 044855          231 VLLLRGNSLQGHIPNELC-QLAKLRIMDLS  259 (279)
Q Consensus       231 ~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~  259 (279)
                      .|.+.++.+++.....+. .+++|+.|+++
T Consensus       376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          376 SVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            776666666655555444 46777777777

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4.6e-16  Score=121.04  Aligned_cols=133  Identities=24%  Similarity=0.250  Sum_probs=77.4

Q ss_pred             CceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEE
Q 044855           93 SQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLL  171 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~  171 (279)
                      ++|++|++++|.+..+ +..+..+++|+.|++++|.+....                         +..+..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-------------------------~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-------------------------VGVFDSLTQLTVLD   94 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------TTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-------------------------hhhcccCCCcCEEE
Confidence            5667777777766555 345556666777777766654111                         13345566677777


Q ss_pred             ccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhccc
Q 044855          172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLA  251 (279)
Q Consensus       172 l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  251 (279)
                      +++|.++...+..+..+++|+.|++++|.+.               .+|..+..+++|+.|++++|++++..+..+..++
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc---------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence            7777666644555566666665555544432               3444555566666666666666544444555566


Q ss_pred             CCcEEEccCCEeee
Q 044855          252 KLRIMDLSNNIFSG  265 (279)
Q Consensus       252 ~L~~L~l~~n~l~~  265 (279)
                      +|+.|++++|++.+
T Consensus       160 ~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          160 SLTHAYLFGNPWDC  173 (229)
T ss_dssp             TCCEEECTTSCBCT
T ss_pred             CCCEEEeeCCCccC
Confidence            66666666666553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=2.1e-16  Score=131.40  Aligned_cols=123  Identities=24%  Similarity=0.254  Sum_probs=67.9

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCcccc-CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLT-NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ++++.++ .+|..+.  +.++.|+|++|.+++..+..|. ++++|++|++++|.+. .+....+..+++|++|++++|. 
T Consensus        25 c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~-   99 (361)
T 2xot_A           25 CSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH-   99 (361)
T ss_dssp             CCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC-
T ss_pred             eCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCc-
Confidence            3445555 2333332  3356666666666654444454 6666666666666665 3333455566666666666554 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  129 (279)
                      +..++...|..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            3344444555666666666666666544 334555566666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=7.9e-17  Score=128.00  Aligned_cols=171  Identities=25%  Similarity=0.287  Sum_probs=117.7

Q ss_pred             CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccE
Q 044855           41 NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF  120 (279)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  120 (279)
                      .+.++..++++++.+.+..   .+..+++|+.|++++|.. ..++  .+..+++|++|++++|.+..++. +..+++|+.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i-~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNI-QSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCC-CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCc-ccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence            4666777788887776322   466777888888877753 3333  46677888888888888877766 677788888


Q ss_pred             EEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc
Q 044855          121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS  200 (279)
Q Consensus       121 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~  200 (279)
                      |++++|.+.+.                          +. +.. ++|+.|++++|.+++ .+ .+..+++|+.|++++|.
T Consensus        90 L~L~~N~l~~l--------------------------~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A           90 LSVNRNRLKNL--------------------------NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             EECCSSCCSCC--------------------------TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSC
T ss_pred             EECCCCccCCc--------------------------Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCc
Confidence            88888776521                          11 112 778888898888877 33 47777777776666665


Q ss_pred             CcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855          201 LSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       201 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  266 (279)
                      +.              + ++ .+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       140 i~--------------~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          140 LK--------------S-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CC--------------B-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CC--------------C-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            44              2 22 466777788888888877754  5566777788888888877743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.6e-16  Score=126.23  Aligned_cols=158  Identities=20%  Similarity=0.216  Sum_probs=95.6

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+   +..+++|++|++++|...
T Consensus        26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~   98 (263)
T 1xeu_A           26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLK   98 (263)
T ss_dssp             HTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCS
T ss_pred             hcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccC
Confidence            3455555333  4667777788888777776 444 56777778888887777763222   667777777777776532


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC---
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---  158 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---  158 (279)
                       .++.  +.. ++|++|++++|.++.++ .+..+++|+.|++++|.+.+       + ..+..+++|+.|++++|-.   
T Consensus        99 -~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-------~-~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           99 -NLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-------I-VMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             -CCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-------C-GGGGGCTTCCEEECTTSCCCBC
T ss_pred             -CcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-------C-hHHccCCCCCEEECCCCcCcch
Confidence             2222  222 67777777777776664 46667777777777776652       1 1344555555555555421   


Q ss_pred             ccccCCCCCcEEEccccEeee
Q 044855          159 NWIGNISTLRVLLMSKNYLEA  179 (279)
Q Consensus       159 ~~~~~~~~L~~L~l~~~~l~~  179 (279)
                      ..+..+++|+.|++++|.+..
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEEC
T ss_pred             HHhccCCCCCEEeCCCCcccC
Confidence            233445555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=6.7e-16  Score=119.35  Aligned_cols=148  Identities=14%  Similarity=0.251  Sum_probs=97.5

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+. ......+..+++|++|++++|. +
T Consensus        18 c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l   92 (220)
T 2v9t_B           18 CRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK-I   92 (220)
T ss_dssp             CTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSC-C
T ss_pred             cCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCc-C
Confidence            4556666 3444333  56778888888777666667777788888888887776 4444566777777777777665 3


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW  160 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  160 (279)
                      ..++...|..+++|++|++++|.+..++ ..+..+++|+.|++++|.+....                         +..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------------------~~~  147 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-------------------------KGT  147 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-------------------------TTT
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-------------------------HHH
Confidence            4555566677777777777777776553 45566777777777777665221                         234


Q ss_pred             ccCCCCCcEEEccccEeee
Q 044855          161 IGNISTLRVLLMSKNYLEA  179 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~~  179 (279)
                      +..+++|+.|++++|.+..
T Consensus       148 ~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTCTTCCEEECCSSCEEC
T ss_pred             HhCCCCCCEEEeCCCCcCC
Confidence            5566777777777776644

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=1e-15  Score=118.36  Aligned_cols=150  Identities=17%  Similarity=0.253  Sum_probs=85.1

Q ss_pred             cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855           22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS  101 (279)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  101 (279)
                      +.++++++.++ .+|..+  .+.+++|++++|.+.+..+...+..+++|+.|++++|. +..++...+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence            46777777776 455543  23456777777777633333445566666666665554 334444455666666666666


Q ss_pred             CCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeee
Q 044855          102 DCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN  180 (279)
Q Consensus       102 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~  180 (279)
                      +|.++.++. .+..+++|++|++++|.+.+.                         .+..+..+++|+.|++++|.++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCV-------------------------GNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCB-------------------------CTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeE-------------------------CHhHcCCCccCCEEECCCCcCCEE
Confidence            666655544 344566666666666655421                         123444555666666666666554


Q ss_pred             ccccccCCCCccEEeccCCc
Q 044855          181 IPVQLNHLKSLELIDIFENS  200 (279)
Q Consensus       181 ~~~~l~~~~~L~~l~l~~~~  200 (279)
                      .|..+..+++|+.|++++|.
T Consensus       145 ~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          145 APGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSCC
T ss_pred             CHHHhcCCCCCCEEEecCcC
Confidence            45555555555555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=7.1e-18  Score=147.69  Aligned_cols=196  Identities=21%  Similarity=0.201  Sum_probs=98.1

Q ss_pred             cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-------------cCcccchhhhcccccceeee-ecCCccc
Q 044855           16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-------------FQGTFSINSLANHSKLEVLL-LSSGSNM   81 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~L~~L~-l~~~~~~   81 (279)
                      ..+++|+.|+|++|++. .+|..+..+++|+.|++++|.             .. ...+..+..+++|+.|+ ++.+.. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYL-  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhccc-
Confidence            56778888888888877 677788888888888886653             11 12223445555555555 222210 


Q ss_pred             ccccCC-----CCC--CCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceecc
Q 044855           82 LQVKTE-----SWH--PTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS  154 (279)
Q Consensus        82 ~~~~~~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  154 (279)
                      ......     .+.  ....|+.|++++|.++.+|. +..+++|+.|++++|.+.                         
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-------------------------  476 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-------------------------  476 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-------------------------
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-------------------------
Confidence            000000     000  00124444444444444443 444444444444444433                         


Q ss_pred             CCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCC-chhhhcCcCCcEEE
Q 044855          155 GNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRI-PYQINELSNLHVLL  233 (279)
Q Consensus       155 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  233 (279)
                       .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++              |++.+.. |..+..+++|+.|+
T Consensus       477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~--------------N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN--------------NRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS--------------SCCCSSSTTGGGGGCTTCCEEE
T ss_pred             -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC--------------CCCCCCCCcHHHhcCCCCCEEE
Confidence             133445555556666666665555 33 455555444333333              3333333 55556666666666


Q ss_pred             ccCCcccccCCh---hhhcccCCcEEE
Q 044855          234 LRGNSLQGHIPN---ELCQLAKLRIMD  257 (279)
Q Consensus       234 l~~n~~~~~~~~---~~~~~~~L~~L~  257 (279)
                      +++|++++..+.   .+..+|+|+.|+
T Consensus       540 L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          540 LQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ecCCcCCCCccHHHHHHHHCcccCccC
Confidence            666666543322   223355566554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=9.1e-16  Score=125.94  Aligned_cols=234  Identities=17%  Similarity=0.128  Sum_probs=151.2

Q ss_pred             CCCccEEEeeCCccc--ccCCccccCCCcCcEEeccCcccCcccchhhhcc--------cccceeeeecCCcccccccCC
Q 044855           18 LTHLKVLDIFNNQLS--GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLAN--------HSKLEVLLLSSGSNMLQVKTE   87 (279)
Q Consensus        18 l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~   87 (279)
                      +++|+.|+|++|++.  .....   .++.++.+....+.    ++...+..        +++|+.+.+..  .+..+...
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~  118 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF----VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDA  118 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE----ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTT
T ss_pred             hccCeEEecCcceeEEecCccc---cccccccccccccc----cCHHHhcccccccccccCCCcEEECCc--cccchhHH
Confidence            788999999999877  22211   22334444444443    33455566        78888888766  35567777


Q ss_pred             CCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhc----------------------
Q 044855           88 SWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS----------------------  144 (279)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----------------------  144 (279)
                      +|.++++|+.+++.++.+..++. .+..+.++..+............  ......+..                      
T Consensus       119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~--~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~  196 (329)
T 3sb4_A          119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN--RWEHFAFIEGEPLETTIQVGAMGKLEDEIMK  196 (329)
T ss_dssp             TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST--TTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred             HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc--cccccccccccccceeEEecCCCcHHHHHhh
Confidence            78888888888888777765554 33445555555544321100000  000111222                      


Q ss_pred             ----cCcccceeccCCCCcc----c-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCcc
Q 044855          145 ----STSLEGLDISGNIPNW----I-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKF  215 (279)
Q Consensus       145 ----~~~L~~l~l~~~~~~~----~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~  215 (279)
                          ..++..+.+.+.+...    + ..+++|+.+++++|.++......|.++++|+.+++.++ +              
T Consensus       197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i--------------  261 (329)
T 3sb4_A          197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L--------------  261 (329)
T ss_dssp             TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C--------------
T ss_pred             cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c--------------
Confidence                2333344444432111    1 13789999999998888877788999998888777654 2              


Q ss_pred             CCCCchhhhcCcCCc-EEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          216 FGRIPYQINELSNLH-VLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       216 ~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ......+|.+|++|+ .+++.+ .++...+..|.+|++|+.+++++|.++..-+.+|.+++.|+
T Consensus       262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence            234456788999999 999988 77767788899999999999999999866667999998886

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=7.9e-16  Score=127.92  Aligned_cols=148  Identities=31%  Similarity=0.343  Sum_probs=124.2

Q ss_pred             CCCCCcCcCCCCcccc-CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            1 DLSSNNFEGHLPQCLN-HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      ||++|.++...+..+. .+++|++|+|++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|+.|++++|.
T Consensus        45 ~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~  123 (361)
T 2xot_A           45 DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH  123 (361)
T ss_dssp             ECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCc
Confidence            5889999988888888 9999999999999999777788999999999999999997 5566778999999999999987


Q ss_pred             ccccccCCCCCCCCceeEEEecCCcCcccChhh----hcCCCccEEEeeCCcccccCCCCCcCcchhhccCc--ccceec
Q 044855           80 NMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFL----LQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTS--LEGLDI  153 (279)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--L~~l~l  153 (279)
                       +..+....|..+++|++|++++|.+..++...    ..+++|+.|++++|.+....      ...+..++.  ++.+++
T Consensus       124 -i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          124 -IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP------LTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             -CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC------HHHHHHSCHHHHTTEEC
T ss_pred             -ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC------HHHhhhccHhhcceEEe
Confidence             45566677899999999999999999998765    46899999999999887322      245556665  477888


Q ss_pred             cCC
Q 044855          154 SGN  156 (279)
Q Consensus       154 ~~~  156 (279)
                      ++|
T Consensus       197 ~~N  199 (361)
T 2xot_A          197 HNN  199 (361)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=1.1e-15  Score=113.14  Aligned_cols=138  Identities=18%  Similarity=0.220  Sum_probs=102.9

Q ss_pred             CCceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcE
Q 044855           92 TSQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRV  169 (279)
Q Consensus        92 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~  169 (279)
                      .++|++|++++|.+.  .+|..+..+++|+.|++++|.+..                          + ..+..+++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--------------------------~-~~~~~l~~L~~   75 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--------------------------V-SNLPKLPKLKK   75 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--------------------------C-SSCCCCSSCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--------------------------h-hhhccCCCCCE
Confidence            367888888888876  777777778888888888887651                          1 34566788888


Q ss_pred             EEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCC-CchhhhcCcCCcEEEccCCcccccCC---h
Q 044855          170 LLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRGNSLQGHIP---N  245 (279)
Q Consensus       170 L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~  245 (279)
                      |++++|.++...|..+..+++|+.|++++|.+              .+. .+..+..+++|+.|++++|++++..+   .
T Consensus        76 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  141 (168)
T 2ell_A           76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKL--------------KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES  141 (168)
T ss_dssp             EEEESCCCCSCCCHHHHHCTTCCEEECBSSSC--------------CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred             EECcCCcCchHHHHHHhhCCCCCEEeccCCcc--------------CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH
Confidence            88888888776666666677777665555543              332 12567889999999999999986555   4


Q ss_pred             hhhcccCCcEEEccCCEeeeecCccc
Q 044855          246 ELCQLAKLRIMDLSNNIFSGSIPSCL  271 (279)
Q Consensus       246 ~~~~~~~L~~L~l~~n~l~~~~p~~~  271 (279)
                      .+..+++|+.|++++|.+. .+|++.
T Consensus       142 ~~~~l~~L~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A          142 VFKLLPQLTYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             HHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred             HHHhCccCcEecCCCCChh-hccccc
Confidence            7888999999999999987 667643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=7.4e-14  Score=117.27  Aligned_cols=240  Identities=10%  Similarity=0.093  Sum_probs=156.2

Q ss_pred             CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCcee
Q 044855           17 HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLK   96 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   96 (279)
                      .+..++.+.+.+. ++.....+|.++ +|+.+.+..+ +. .+....+.++ +|+.+.+..  .+..+...+|..+++|+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCC
Confidence            4566677777654 333445566664 6777777665 33 4444555554 577777764  35566667777788888


Q ss_pred             EEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----CccccCCCCCcEEEc
Q 044855           97 VLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI----PNWIGNISTLRVLLM  172 (279)
Q Consensus        97 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~~L~~L~l  172 (279)
                      .+++.++.+..++...+.+.+|+.+.+..+ +..      .-...+.++.+|+.+++..++    ..+|.. .+|+.+.+
T Consensus       184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~------I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKE------IGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCE------ECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE
T ss_pred             eeecCCCcceEechhhEeecccCEEEeCCc-hhe------ehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe
Confidence            888887777777776666777887777643 331      223566677777777776653    233444 56777777


Q ss_pred             cccEeeeeccccccCCCCccEEeccCCcCc---------------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855          173 SKNYLEANIPVQLNHLKSLELIDIFENSLS---------------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN  237 (279)
Q Consensus       173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~---------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  237 (279)
                      .. .++.....+|.+|++|+.+.+.++...               .+|+.+.+.+ .+......+|.+|++|+.+.+..+
T Consensus       256 p~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          256 PN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             ET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            43 355555667777777777777665432               1677777763 354455667888888888888554


Q ss_pred             cccccCChhhhcccCCcEEEccCCEeeeecCccccCCc
Q 044855          238 SLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS  275 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  275 (279)
                       ++......|.++ +|+.+++.+|......+..|..++
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence             555667778888 888888888887755555666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=3.8e-15  Score=112.64  Aligned_cols=70  Identities=19%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855          159 NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS  238 (279)
Q Consensus       159 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  238 (279)
                      ..+..+++|+.|++++|.+++..+..+..+++|+.|++++              |++.+..+..+..+++|+.|++++|+
T Consensus        72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--------------N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD--------------NQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS--------------SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC--------------CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            4555666677777777766665555565655555444433              33334455566667777777777777


Q ss_pred             cccc
Q 044855          239 LQGH  242 (279)
Q Consensus       239 ~~~~  242 (279)
                      +...
T Consensus       138 l~c~  141 (192)
T 1w8a_A          138 FNCN  141 (192)
T ss_dssp             BCCS
T ss_pred             ccCc
Confidence            6644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=2.5e-16  Score=141.96  Aligned_cols=101  Identities=24%  Similarity=0.364  Sum_probs=53.2

Q ss_pred             ccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCc
Q 044855           84 VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPN  159 (279)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~  159 (279)
                      .+...+..+++|+.|++++|.+..++..++.+++|+.|++++|.+.       .++..+..+++|+.|++++|    +|.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~l~~L~~L~Ls~N~l~~lp~  287 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-------ELPAEIKNLSNLRVLDLSHNRLTSLPA  287 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-------CCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-------ccChhhhCCCCCCEEeCcCCcCCccCh
Confidence            3445566777777888887777777777777777888888777665       22233333333444333333    333


Q ss_pred             cccCCCCCcEEEccccEeeeeccccccCCCCcc
Q 044855          160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLE  192 (279)
Q Consensus       160 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  192 (279)
                      .++.+++|+.|++++|.++. +|..+..+++|+
T Consensus       288 ~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~  319 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQ  319 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCC
T ss_pred             hhcCCCCCCEEECCCCCCCc-cChhhhcCCCcc
Confidence            44445555555555555443 343344444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=3.3e-15  Score=122.63  Aligned_cols=215  Identities=12%  Similarity=0.063  Sum_probs=130.9

Q ss_pred             CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc---cccccCCCCCCCCc
Q 044855           18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN---MLQVKTESWHPTSQ   94 (279)
Q Consensus        18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~   94 (279)
                      |++|++|.+.+ .++.....+|.++++|+++++.+|.+. .+....+..+.++..+.......   ...+...+|..+..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            77777777766 555455556777777777777766655 44445555555555554433210   11222333444444


Q ss_pred             ee-EEEecCCcCcccChhhh----cCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----C-CccccCC
Q 044855           95 LK-VLKLSDCQLHVIPSFLL----QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----I-PNWIGNI  164 (279)
Q Consensus        95 L~-~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~-~~~~~~~  164 (279)
                      |+ .+.+....  .++..+.    ...++..+.+.+.-...      ........+++|+.++++++    + ...|..+
T Consensus       178 L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~------~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~  249 (329)
T 3sb4_A          178 LETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNA------DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK  249 (329)
T ss_dssp             CEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHH------HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred             cceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHH------HHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence            54 33333221  1111111    22344455544431110      00111123677888888764    2 3457889


Q ss_pred             CCCcEEEccccEeeeeccccccCCCCcc-EEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLE-LIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI  243 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (279)
                      .+|+.+++.++ ++.....+|.++++|+ .+++.+ .              +....+.+|.+|++|+.+++++|.++...
T Consensus       250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~--------------l~~I~~~aF~~c~~L~~l~l~~n~i~~I~  313 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S--------------VTAIEFGAFMGCDNLRYVLATGDKITTLG  313 (329)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T--------------CCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred             CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c--------------ceEEchhhhhCCccCCEEEeCCCccCccc
Confidence            99999999988 7777778899999888 777765 2              22344678899999999999999999788


Q ss_pred             ChhhhcccCCcEEEc
Q 044855          244 PNELCQLAKLRIMDL  258 (279)
Q Consensus       244 ~~~~~~~~~L~~L~l  258 (279)
                      ...|.++++|+.++.
T Consensus       314 ~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          314 DELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTCTTCCCCEEEC
T ss_pred             hhhhcCCcchhhhcc
Confidence            889999999998863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=2.3e-17  Score=144.45  Aligned_cols=192  Identities=22%  Similarity=0.201  Sum_probs=138.4

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCc-------------ccccCCccccCCCcCcEEe-ccCcccCccc----chh
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQ-------------LSGNFPSTLTNFTSLEYLD-LSSINFQGTF----SIN   62 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~----~~~   62 (279)
                      ||++|.++ .+|..++++++|+.|++.++.             ..+..|..+..+++|+.|+ ++.+.+....    ...
T Consensus       355 ~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n  433 (567)
T 1dce_A          355 ELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN  433 (567)
T ss_dssp             CCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             cCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcc
Confidence            46777887 789999999999999997664             3456677788899999998 5655432100    001


Q ss_pred             hhcc--cccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcc
Q 044855           63 SLAN--HSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDD  140 (279)
Q Consensus        63 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  140 (279)
                      .+..  ...|+.|++++|.. ..++.  +..+++|+.|++++|.+..+|..+..+++|+.|++++|.+.+          
T Consensus       434 ~i~~l~~~~L~~L~Ls~n~l-~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~----------  500 (567)
T 1dce_A          434 SVLKMEYADVRVLHLAHKDL-TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN----------  500 (567)
T ss_dssp             HHHHHHHTTCSEEECTTSCC-SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC----------
T ss_pred             cccccCccCceEEEecCCCC-CCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC----------
Confidence            1111  13588999999864 34543  889999999999999999999999999999999999998762          


Q ss_pred             hhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeec-cccccCCCCccEEeccCCcCcccceEEEeecCccCCCC
Q 044855          141 GLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANI-PVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRI  219 (279)
Q Consensus       141 ~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~  219 (279)
                                      +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|.+..           +....
T Consensus       501 ----------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-----------~~~~~  552 (567)
T 1dce_A          501 ----------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-----------EEGIQ  552 (567)
T ss_dssp             ----------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-----------SSSCT
T ss_pred             ----------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-----------CccHH
Confidence                            23 5667788888888888888754 7778888877776666665442           00112


Q ss_pred             chhhhcCcCCcEEEc
Q 044855          220 PYQINELSNLHVLLL  234 (279)
Q Consensus       220 ~~~~~~~~~L~~L~l  234 (279)
                      ...+..+++|+.|++
T Consensus       553 ~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          553 ERLAEMLPSVSSILT  567 (567)
T ss_dssp             THHHHHCTTCSEEEC
T ss_pred             HHHHHHCcccCccCC
Confidence            223445788888764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=8.5e-15  Score=110.74  Aligned_cols=108  Identities=29%  Similarity=0.360  Sum_probs=59.4

Q ss_pred             ceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEcc
Q 044855           94 QLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMS  173 (279)
Q Consensus        94 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~  173 (279)
                      +|++|++++|.++.+|..+..+++|+.|++++|.+...                         .+..|..+++|+.|+++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-------------------------~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-------------------------SNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-------------------------CTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-------------------------CHhHccCCCCCCEEECC
Confidence            45555555555555555555555555555555544311                         12345566666677777


Q ss_pred             ccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855          174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ  240 (279)
Q Consensus       174 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (279)
                      +|.++...+..+..+++|+.|++++|.              +....+..+..+++|+.|++++|++.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGND--------------ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSC--------------CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCC--------------CCeeChhhhhcCccccEEEeCCCCee
Confidence            666666555556666655544444433              32333344566666777777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=7.3e-15  Score=108.62  Aligned_cols=134  Identities=22%  Similarity=0.175  Sum_probs=103.4

Q ss_pred             CCCCccEEEeeCCccc-ccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           17 HLTHLKVLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.   ..+..+++|++|++++|..... ....+..+++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCC
Confidence            3478999999999887 67777788899999999999988743   6778888999999988875433 33445568899


Q ss_pred             eEEEecCCcCcccC--hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC
Q 044855           96 KVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI  157 (279)
Q Consensus        96 ~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  157 (279)
                      ++|++++|.+..++  ..+..+++|+.|++++|.+.+..+   .....+..+++|++|+++++-
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND---YRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT---HHHHHHTTCSSCCEETTEETT
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH---HHHHHHHhCccCcEecCCCCC
Confidence            99999999988776  577788999999999998863221   011367788899999988773

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=1e-14  Score=105.57  Aligned_cols=128  Identities=20%  Similarity=0.228  Sum_probs=86.7

Q ss_pred             CCceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcE
Q 044855           92 TSQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRV  169 (279)
Q Consensus        92 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~  169 (279)
                      .++|+.|++++|.+.  .+|..+..+++|+.|++++|.+.+                          . ..++.+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~-~~~~~l~~L~~   68 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--------------------------I-ANLPKLNKLKK   68 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--------------------------C-TTCCCCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--------------------------c-hhhhcCCCCCE
Confidence            356777777777775  666666677777777777776541                          1 34556677777


Q ss_pred             EEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCC-CchhhhcCcCCcEEEccCCcccccCC---h
Q 044855          170 LLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRGNSLQGHIP---N  245 (279)
Q Consensus       170 L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~  245 (279)
                      |++++|.+++..|..+..+++|+.|++++|.+.              +. .+..+..+++|+.|++++|++++..+   .
T Consensus        69 L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~--------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  134 (149)
T 2je0_A           69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK--------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN  134 (149)
T ss_dssp             EECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC--------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHH
T ss_pred             EECCCCcccchHHHHhhhCCCCCEEECCCCcCC--------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHH
Confidence            777777777655555656666665555555433              21 23567778888888888888886555   4


Q ss_pred             hhhcccCCcEEEccC
Q 044855          246 ELCQLAKLRIMDLSN  260 (279)
Q Consensus       246 ~~~~~~~L~~L~l~~  260 (279)
                      .+..+++|+.|++++
T Consensus       135 ~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          135 VFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHCTTCCEETTBC
T ss_pred             HHHHCCCcccccCCC
Confidence            677888888888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=2.6e-15  Score=135.31  Aligned_cols=157  Identities=22%  Similarity=0.242  Sum_probs=80.7

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccC-----cccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSS-----INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS   93 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   93 (279)
                      +.++.|+|.++.+.. .+..+.....|+.+.|..     +.+  ......+..+..|+.|++++|... .++.. +..++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIF-NISAN-IFKYD  247 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGG-GGGCC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCC-CCChh-hcCCC
Confidence            556667776666553 333332223333333222     111  122345566677777777766532 34333 33667


Q ss_pred             ceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcE
Q 044855           94 QLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRV  169 (279)
Q Consensus        94 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~  169 (279)
                      +|++|++++|.+..+|..+..+++|+.|++++|.+.       .++..+..+++|++|++++|    +|..++.+++|+.
T Consensus       248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-------SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF  320 (727)
T ss_dssp             SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-------SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred             CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-------ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence            777777777777777777777777777777777765       33455667777777777766    5677889999999


Q ss_pred             EEccccEeeeeccccccC
Q 044855          170 LLMSKNYLEANIPVQLNH  187 (279)
Q Consensus       170 L~l~~~~l~~~~~~~l~~  187 (279)
                      |++++|.+++..|..+..
T Consensus       321 L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          321 LGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             EECTTSCCCSHHHHHHHH
T ss_pred             EeCCCCccCCCChHHHhh
Confidence            999999998866666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=3.6e-13  Score=113.07  Aligned_cols=240  Identities=11%  Similarity=0.129  Sum_probs=158.0

Q ss_pred             cCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccccc
Q 044855            6 NFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVK   85 (279)
Q Consensus         6 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   85 (279)
                      .++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .+....+..|.+|+.+++..+. +..++
T Consensus       123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~-l~~I~  196 (401)
T 4fdw_A          123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTK-ITKLP  196 (401)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSC-CSEEC
T ss_pred             ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCc-ceEec
Confidence            3444556677775 6888888766 554555567663 688888775 343 4555677778888888886653 45556


Q ss_pred             CCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----Ccc
Q 044855           86 TESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI----PNW  160 (279)
Q Consensus        86 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~  160 (279)
                      ..+|. ..+|+.+.+..+ +..++. .+..+++|+.+.+..+ +...      -...+.+ .+|+.+.+...+    ...
T Consensus       197 ~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I------~~~aF~~-~~L~~i~lp~~i~~I~~~a  266 (401)
T 4fdw_A          197 ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI------GQEAFRE-SGITTVKLPNGVTNIASRA  266 (401)
T ss_dssp             TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE------CTTTTTT-CCCSEEEEETTCCEECTTT
T ss_pred             hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc------ccccccc-CCccEEEeCCCccEEChhH
Confidence            66666 467777777643 555544 4556777777777654 2211      1223333 567777776553    345


Q ss_pred             ccCCCCCcEEEccccEee-----eeccccccCCCCccEEeccCCcCc----------ccceEEEeecCccCCCCchhhhc
Q 044855          161 IGNISTLRVLLMSKNYLE-----ANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQINE  225 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~l~l~~~~~~----------~~L~~L~l~~~~~~~~~~~~~~~  225 (279)
                      |..+++|+.+.+.++.+.     ......|.+|++|+.+.+.++ +.          .+|+.+.+..+ +......+|.+
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~  344 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN  344 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence            677778888887776554     345567777788887777643 22          16778887544 44455678889


Q ss_pred             CcCCcEEEccCCcccccCChhhhccc-CCcEEEccCCEee
Q 044855          226 LSNLHVLLLRGNSLQGHIPNELCQLA-KLRIMDLSNNIFS  264 (279)
Q Consensus       226 ~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~  264 (279)
                      + +|+.+++.+|.........+.+++ .+..|++-.+.+.
T Consensus       345 ~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          345 T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            9 999999999988766667777775 6888888776654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.1e-14  Score=105.46  Aligned_cols=131  Identities=21%  Similarity=0.197  Sum_probs=104.4

Q ss_pred             CCCCccEEEeeCCccc-ccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           17 HLTHLKVLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      ..+++++|++++|.++ +.+|..+..+++|++|++++|.+.+.   ..+..+++|++|++++|...... +..+..+++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCC
Confidence            3578999999999988 67888889999999999999988744   67788899999999988754333 3345668999


Q ss_pred             eEEEecCCcCcccC--hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceecc
Q 044855           96 KVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS  154 (279)
Q Consensus        96 ~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  154 (279)
                      ++|++++|.++.++  ..+..+++|+.|++++|.+.+..+   .....+..+++|+.++++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND---YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---HHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH---HHHHHHHHCCCcccccCC
Confidence            99999999998765  678889999999999998873321   111367888999999876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=7.7e-14  Score=105.44  Aligned_cols=123  Identities=24%  Similarity=0.379  Sum_probs=93.5

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      +++++.++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|.+. ......+..+++|++|++++|. 
T Consensus        16 ~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~-   89 (193)
T 2wfh_A           16 RCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR-   89 (193)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-
T ss_pred             EcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCc-
Confidence            35677777 4454442  57888888888887 67778888888888888888887 4555677888888888888776 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  129 (279)
                      +..++...|..+++|++|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            455666677888888888888888877776 3566788888888888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=7.9e-14  Score=103.95  Aligned_cols=131  Identities=20%  Similarity=0.210  Sum_probs=64.1

Q ss_pred             eEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEcccc
Q 044855           96 KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKN  175 (279)
Q Consensus        96 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~  175 (279)
                      +.+++++++++.+|..+  .++++.|++++|.+.+..                         +..++.+++|++|++++|
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~-------------------------~~~~~~l~~L~~L~l~~n   62 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLP-------------------------HGVFDKLTQLTKLSLSQN   62 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCC-------------------------TTTTTTCTTCSEEECCSS
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeC-------------------------HHHhcCcccccEEECCCC
Confidence            44555555555555432  245666666666544111                         122344455555555555


Q ss_pred             EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcE
Q 044855          176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRI  255 (279)
Q Consensus       176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  255 (279)
                      .++...+..+..+++|+.|++++|.              +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus        63 ~l~~~~~~~~~~l~~L~~L~l~~N~--------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           63 QIQSLPDGVFDKLTKLTILYLHENK--------------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK  128 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cceEeChhHccCCCccCEEECCCCC--------------ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence            5554333344444444433333332              22333334445555555555555555434434455555555


Q ss_pred             EEccCCEeeeec
Q 044855          256 MDLSNNIFSGSI  267 (279)
Q Consensus       256 L~l~~n~l~~~~  267 (279)
                      |++++|++++..
T Consensus       129 L~l~~N~~~~~~  140 (177)
T 2o6r_A          129 IWLHTNPWDCSC  140 (177)
T ss_dssp             EECCSSCBCCCH
T ss_pred             EEecCCCeeccC
Confidence            555555555433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=3.5e-14  Score=105.75  Aligned_cols=112  Identities=13%  Similarity=0.166  Sum_probs=85.4

Q ss_pred             ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855           13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT   92 (279)
Q Consensus        13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   92 (279)
                      ..+.++++|++|++++|.++ .++......++|++|++++|.+.+.   ..+..+++|++|++++|.. ..++...+..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQAL   87 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHC
T ss_pred             HhcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcC
Confidence            34677889999999999888 4555333344999999999988743   5677788888888888764 34555555778


Q ss_pred             CceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCccc
Q 044855           93 SQLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~  129 (279)
                      ++|++|++++|.+..++.  .+..+++|+.|++++|.+.
T Consensus        88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence            888888888888877776  6777888888888888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=5.5e-14  Score=104.71  Aligned_cols=133  Identities=17%  Similarity=0.223  Sum_probs=96.0

Q ss_pred             CCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCc
Q 044855           89 WHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLR  168 (279)
Q Consensus        89 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~  168 (279)
                      +..+.+|+.|++++|.++.++......++|+.|++++|.+.+.                           ..++.+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---------------------------~~l~~l~~L~   67 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---------------------------DGFPLLRRLK   67 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---------------------------CCCCCCSSCC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---------------------------cccccCCCCC
Confidence            4556788888888888877765433345888888888876521                           2456678888


Q ss_pred             EEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCch--hhhcCcCCcEEEccCCcccccCCh-
Q 044855          169 VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPY--QINELSNLHVLLLRGNSLQGHIPN-  245 (279)
Q Consensus       169 ~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~-  245 (279)
                      .|++++|.++...+..+..+++|+.|++++|.+.               .++.  .+..+++|+.|++++|+++ ..+. 
T Consensus        68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~  131 (176)
T 1a9n_A           68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV---------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHY  131 (176)
T ss_dssp             EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC---------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTH
T ss_pred             EEECCCCcccccCcchhhcCCCCCEEECCCCcCC---------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhH
Confidence            8888888888754455577777776666655542               2343  6778889999999999988 4454 


Q ss_pred             ---hhhcccCCcEEEccCCEee
Q 044855          246 ---ELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       246 ---~~~~~~~L~~L~l~~n~l~  264 (279)
                         .+..+++|+.||+++|...
T Consensus       132 ~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          132 RLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHHHHHCTTCSEETTEECCHH
T ss_pred             HHHHHHHCCccceeCCCcCCHH
Confidence               4788899999999988765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=1.2e-13  Score=104.45  Aligned_cols=124  Identities=20%  Similarity=0.299  Sum_probs=90.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCc-cccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPS-TLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      |++++.++ .+|..+.  +++++|++++|.+++..+. .|..+++|++|++++|.+. ......+..+++|++|++++|.
T Consensus        14 ~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           14 DCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCC
T ss_pred             EcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCc
Confidence            46677776 4554443  3788888888888755443 4778888888888888887 3444667788888888888776


Q ss_pred             ccccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCccc
Q 044855           80 NMLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  129 (279)
                       +..++...+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus        90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence             4455556677788888888888888655 556677788888888888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=4e-13  Score=100.12  Aligned_cols=123  Identities=21%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.+.. +|..+  .++|++|++++|++++..+..|..+++|++|++++|.+. ..+...+..+++|+.|++++|. +
T Consensus        14 ~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~-l   88 (177)
T 2o6r_A           14 CNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK-L   88 (177)
T ss_dssp             CCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             ecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCC-c
Confidence            45666663 34333  367888888888888666666788888888888888876 4444556778888888888775 3


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCccc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  129 (279)
                      ..++...+..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            455566677788888888888888777764 356788888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=1.5e-12  Score=109.32  Aligned_cols=116  Identities=13%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             CcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc-------
Q 044855            7 FEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS-------   79 (279)
Q Consensus         7 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------   79 (279)
                      ++.+...+|.+|.+|+++.+..+ ++.....+|.++.+|+.+++..+ +. .+....+..+..|+.+.+..+-       
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeeccee
Confidence            44456678999999999999854 55456678999999999999765 33 4445666777777666554221       


Q ss_pred             -------------ccccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCC
Q 044855           80 -------------NMLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHN  126 (279)
Q Consensus        80 -------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  126 (279)
                                   ....+...+|..+.+|+.+.+.++. ..++. .+..+.+|+.+.+..+
T Consensus       136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred             eecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence                         0112234456677777777776542 33332 4445666766666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=8.2e-15  Score=111.37  Aligned_cols=145  Identities=23%  Similarity=0.278  Sum_probs=84.3

Q ss_pred             ceeEEEecCC--cCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCC
Q 044855           94 QLKVLKLSDC--QLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTL  167 (279)
Q Consensus        94 ~L~~L~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L  167 (279)
                      .++...+.+.  .++.+|..+..+++|++|++++|.+.+       ++ .+..+++|+.|++++|    ++..+..+++|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-------l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L   95 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-------IS-SLSGMENLRILSLGRNLIKKIENLDAVADTL   95 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-------CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-------cc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence            4555555544  456666678888899999998887762       22 4444555555555444    22223333445


Q ss_pred             cEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCc-hhhhcCcCCcEEEccCCcccccCCh-
Q 044855          168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPN-  245 (279)
Q Consensus       168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-  245 (279)
                      +.|++++|.+++ .+ .+..++              +|+.|++++|++.+... ..+..+++|+.|++++|++.+..|. 
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~--------------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLV--------------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHH--------------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             CEEECcCCcCCc-CC-ccccCC--------------CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence            555555554443 22 233333              44455555555543222 3567788888888888888655443 


Q ss_pred             ---------hhhcccCCcEEEccCCEee
Q 044855          246 ---------ELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       246 ---------~~~~~~~L~~L~l~~n~l~  264 (279)
                               .+..+++|+.||  ++.++
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cchHHHHHHHHHhCCCcEEEC--CcccC
Confidence                     366778888776  66555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=2.7e-14  Score=108.47  Aligned_cols=147  Identities=22%  Similarity=0.276  Sum_probs=90.3

Q ss_pred             cCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCC
Q 044855          114 QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLK  189 (279)
Q Consensus       114 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  189 (279)
                      ....++.+++..+.+.+..+....++..+..+++|++|+++++    ++ .+..+++|+.|++++|.++. +|..+..++
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~   93 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-IENLDAVAD   93 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-ccchhhcCC
Confidence            3344555555555554433322333334555555555555543    22 33444555555555555443 333333333


Q ss_pred             CccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC-hhhhcccCCcEEEccCCEeeeecC
Q 044855          190 SLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP-NELCQLAKLRIMDLSNNIFSGSIP  268 (279)
Q Consensus       190 ~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p  268 (279)
                                    +|+.|++++|++.+ ++ .+..+++|+.|++++|++++... ..+..+++|+.|++++|++++..|
T Consensus        94 --------------~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           94 --------------TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             --------------HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             --------------cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence                          56677777777755 34 67889999999999999985433 578899999999999999987766


Q ss_pred             cc----------ccCCcccc
Q 044855          269 SC----------LGNVSFWR  278 (279)
Q Consensus       269 ~~----------~~~~~~l~  278 (279)
                      ..          +..++.|+
T Consensus       158 ~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          158 ENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             TTTTHHHHHHHHHHHCSSCS
T ss_pred             cccchHHHHHHHHHhCCCcE
Confidence            53          66666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.31  E-value=2.8e-10  Score=95.57  Aligned_cols=113  Identities=12%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CcCCCCccccCCC-CccEEEeeCCcccccCCccccCCCcCcEEeccCcc---cCcccchhhhcccccceeeeecCCcccc
Q 044855            7 FEGHLPQCLNHLT-HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN---FQGTFSINSLANHSKLEVLLLSSGSNML   82 (279)
Q Consensus         7 l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~   82 (279)
                      ++.+...+|.+++ .|+++.+.++ ++.....+|.++.+|+.+.+..+.   +. .+....+..+..|+.+.+..+  ..
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~--~~  126 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS--VT  126 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT--CS
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc--cc
Confidence            3445566788775 5888888865 454666788888999998887652   32 444556677777777666433  34


Q ss_pred             cccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEee
Q 044855           83 QVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLS  124 (279)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~  124 (279)
                      .+...+|..+.+|+.+.+... +..+. ..+..+.+|+.+.+.
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             eehhhhhhhhcccccccccce-eeeecccceeccccccccccc
Confidence            455556666666776666532 22222 233344445554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=1.5e-11  Score=91.18  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855           22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS  101 (279)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  101 (279)
                      +.++++++.++ .+|..+.  ++|++|++++|.+. ......+..+++|++|++++|. +..++...|..+++|++|+++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence            56777777765 5555442  67777777777776 3444566677777777777764 445566667778888888888


Q ss_pred             CCcCcccChh-hhcCCCccEEEeeCCccc
Q 044855          102 DCQLHVIPSF-LLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus       102 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  129 (279)
                      +|.+..++.. +..+++|+.|++++|.+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            8888777764 667888888888888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.5e-11  Score=90.89  Aligned_cols=104  Identities=20%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             ccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEe
Q 044855           21 LKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKL  100 (279)
Q Consensus        21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  100 (279)
                      .++++++++.++ .+|..+  .++|++|++++|.+. ......+..+++|++|++++|. +..++...|..+++|++|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence            456667766666 455444  266777777777665 3334556666777777776665 34556666777888888888


Q ss_pred             cCCcCcccCh-hhhcCCCccEEEeeCCccc
Q 044855          101 SDCQLHVIPS-FLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  129 (279)
                      ++|.+..++. .+..+++|+.|++++|.+.
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            8888877766 3667788888888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=9.9e-12  Score=92.17  Aligned_cols=86  Identities=22%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP  244 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (279)
                      ++|+.|++++|.+++..+..+..+++|+.|++++|.+              .+..+..|..+++|+.|++++|++++..+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~i~~~~~~~l~~L~~L~L~~N~l~~l~~   98 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL--------------TAIPTGVFDKLTQLTQLDLNDNHLKSIPR   98 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--------------CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC--------------CccChhHhCCcchhhEEECCCCccceeCH
Confidence            4566666666666665555566665555444444433              22333334555566666666666654444


Q ss_pred             hhhhcccCCcEEEccCCEee
Q 044855          245 NELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       245 ~~~~~~~~L~~L~l~~n~l~  264 (279)
                      ..+..+++|+.|++++|++.
T Consensus        99 ~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           99 GAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTTCTTCSEEECCSSCBC
T ss_pred             HHhccccCCCEEEeCCCCcc
Confidence            44555566666666666555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=8.7e-12  Score=92.14  Aligned_cols=87  Identities=23%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP  244 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (279)
                      ++++.|++++|.+++..+..+..+++|+.|++++|.              +.+..+..|..+++|+.|++++|++++..+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~--------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~   95 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ--------------LTVLPAGVFDKLTQLTQLSLNDNQLKSIPR   95 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC--------------cCccChhhccCCCCCCEEECCCCccCEeCH
Confidence            566777777777777556666666666654444443              333444455667777777777777765555


Q ss_pred             hhhhcccCCcEEEccCCEeee
Q 044855          245 NELCQLAKLRIMDLSNNIFSG  265 (279)
Q Consensus       245 ~~~~~~~~L~~L~l~~n~l~~  265 (279)
                      ..+..+++|+.|++++|+++.
T Consensus        96 ~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           96 GAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTTTTCTTCCEEECCSSCBCT
T ss_pred             HHhcCCCCCCEEEeCCCCCCC
Confidence            556667777777777777663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.29  E-value=1.5e-10  Score=97.21  Aligned_cols=99  Identities=11%  Similarity=0.015  Sum_probs=65.5

Q ss_pred             ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855          161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ  240 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (279)
                      +..+.+|+.+.+..+ ++.....+|.++.+|+.+++..              + +......+|.+|.+|+.+++..+ ++
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--------------~-v~~I~~~aF~~c~~L~~i~lp~~-l~  355 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--------------L-VEEIGKRSFRGCTSLSNINFPLS-LR  355 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--------------T-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCC--------------c-ccEEhHHhccCCCCCCEEEECcc-cc
Confidence            445556666665543 3443444555666665555432              1 22334567889999999999776 66


Q ss_pred             ccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          241 GHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ......|.+|++|+.+++..+ +. .+..+|.++++|+
T Consensus       356 ~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          356 KIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             EECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             EehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence            567778999999999999765 33 4566888888876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=7.4e-10  Score=92.96  Aligned_cols=242  Identities=10%  Similarity=0.098  Sum_probs=139.7

Q ss_pred             CcCCCCccccCCCCccEEEeeCCc---ccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855            7 FEGHLPQCLNHLTHLKVLDIFNNQ---LSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ   83 (279)
Q Consensus         7 l~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   83 (279)
                      ++.+...+|.+|.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ +. .+....+..+.+|+.+.+...  ...
T Consensus        75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i~lp~~--~~~  150 (394)
T 4gt6_A           75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDTVTIPEG--VTS  150 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCEEECCTT--CCE
T ss_pred             eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhcccccccccce--eee
Confidence            455667899999999999998753   55455667888999998887654 32 455567788888988888643  445


Q ss_pred             ccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCc----------------
Q 044855           84 VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTS----------------  147 (279)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~----------------  147 (279)
                      +...+|..+..|+.+.+..+ +..+....+...+|+.+.+..+-.. ..      ...+..+.+                
T Consensus       151 I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~------~~af~~c~~l~~~~~~~~~~~~~~~  222 (394)
T 4gt6_A          151 VADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IG------TNAFSECFALSTITSDSESYPAIDN  222 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-EC------TTTTTTCTTCCEEEECCSSSCBSSS
T ss_pred             ecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cc------cchhhhccccceecccccccccccc
Confidence            66667778888888887654 3444443344455666665432211 00      011111111                


Q ss_pred             ---------------------ccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc--
Q 044855          148 ---------------------LEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS--  200 (279)
Q Consensus       148 ---------------------L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~--  200 (279)
                                           +..+.+...    -..+|..+..|+.+.+..+.. ......|.++++|+.+.+...-  
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~i~~  301 (394)
T 4gt6_A          223 VLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSRITE  301 (394)
T ss_dssp             CEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTTCCE
T ss_pred             eeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCCCcccc
Confidence                                 111111111    122345556666666654422 2244455566666666554221  


Q ss_pred             Cc-------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEe
Q 044855          201 LS-------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIF  263 (279)
Q Consensus       201 ~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l  263 (279)
                      +.       .+|+.+.+..+ ++.....+|.+|.+|+.+.+-.+ ++......|.+|++|+.+++.++..
T Consensus       302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            00       15566666543 33334456777777777777543 4445556677777777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=4.4e-13  Score=111.49  Aligned_cols=153  Identities=19%  Similarity=0.142  Sum_probs=94.0

Q ss_pred             CCceeEEEecCCcCccc-----Chhhhc-CCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc-----c
Q 044855           92 TSQLKVLKLSDCQLHVI-----PSFLLQ-QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN-----W  160 (279)
Q Consensus        92 ~~~L~~L~l~~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~  160 (279)
                      .+.|+.|++++|.++..     ...+.. .++|++|++++|.+.+..     .......+.+|+.|++++|-..     .
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----LRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            45789999999988532     233332 368999999999875321     1122233557888888887321     1


Q ss_pred             c-----cCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCC
Q 044855          161 I-----GNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFG  217 (279)
Q Consensus       161 ~-----~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~  217 (279)
                      +     ...+.|+.|++++|.++..    ++..+..+++|+.|++++|.+.+              +|+.|++++|.+++
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            1     2457788888888887652    33344667788888888777653              56666666666544


Q ss_pred             CC----chhhhcCcCCcEEEccCCcccccCChhhhc
Q 044855          218 RI----PYQINELSNLHVLLLRGNSLQGHIPNELCQ  249 (279)
Q Consensus       218 ~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  249 (279)
                      ..    +..+..+++|++|++++|.+++.....+..
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            22    223334566666666666665554444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=3.9e-13  Score=111.78  Aligned_cols=133  Identities=21%  Similarity=0.127  Sum_probs=64.3

Q ss_pred             ccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCccc-----Chhh-hcCCCccEEEeeCCcccccCCCCCcCcch
Q 044855           68 SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVI-----PSFL-LQQDHLKFLDLSHNKLVGNFPICGKMDDG  141 (279)
Q Consensus        68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  141 (279)
                      .+|+.|++++|.............+++|++|++++|.++..     ...+ ...++|+.|++++|.+.+...  ..+...
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV--AVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH--HHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH--HHHHHH
Confidence            35555555555432211111122234555555555555221     1112 123455555555555432110  112223


Q ss_pred             hhccCcccceeccCCC---------CccccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCc
Q 044855          142 LRSSTSLEGLDISGNI---------PNWIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       142 ~~~~~~L~~l~l~~~~---------~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~  202 (279)
                      +...++|++|++++|-         ...+...++|+.|++++|.++..    ++..+...++|+.|++++|.+.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3445555555555552         23345567788888888887653    2233445566776666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=1.6e-08  Score=84.34  Aligned_cols=129  Identities=12%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             cCcccceeccCCC----CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcC-------c--ccceEEEee
Q 044855          145 STSLEGLDISGNI----PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSL-------S--SKLITLDLR  211 (279)
Q Consensus       145 ~~~L~~l~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~-------~--~~L~~L~l~  211 (279)
                      ..+++.+.+...+    ...+..+..|+.+.+..+ ++......+..+.+|+.+.+..+-.       .  .+|+.+.+.
T Consensus       216 ~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          216 GKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             CSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEEC
T ss_pred             ccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccccc
Confidence            3444444444331    233455666777766654 4444455666667777666643310       0  166677776


Q ss_pred             cCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcc
Q 044855          212 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF  276 (279)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  276 (279)
                      ++.+......+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+.+..+ ++..-..+|.++..
T Consensus       295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            66655455566777777777777543 44455566777777777777544 44334456655543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=1.1e-09  Score=90.34  Aligned_cols=99  Identities=20%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             CCCC-cCcCCCCccccCCCCccEEEeeC-CcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855            2 LSSN-NFEGHLPQCLNHLTHLKVLDIFN-NQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS   79 (279)
Q Consensus         2 l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   79 (279)
                      .+++ .++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+. ..+...+..+++|+.|++++|.
T Consensus        15 ~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           15 CTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSC
T ss_pred             cCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCc
Confidence            3444 6663 555 77788888888885 7777666667788888888888888776 4444566777777777777765


Q ss_pred             ccccccCCCCCCCCceeEEEecCCcC
Q 044855           80 NMLQVKTESWHPTSQLKVLKLSDCQL  105 (279)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~L~l~~~~~  105 (279)
                       +..++...+..++ |+.|++.+|.+
T Consensus        92 -l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           92 -LESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             -CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             -cceeCHHHcccCC-ceEEEeeCCCc
Confidence             3455555555554 77777777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.02  E-value=1.1e-07  Score=79.22  Aligned_cols=256  Identities=11%  Similarity=0.109  Sum_probs=147.9

Q ss_pred             ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855           13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT   92 (279)
Q Consensus        13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   92 (279)
                      .++....+|+++.+... ++.....+|.++.+|+.+.+..+ +. .+....+.++ +|+.+.+..+  ...+...+|...
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT  113 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC
T ss_pred             cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce--eeEeccceeccC
Confidence            34556677888888654 44455567888888888888654 33 4445556665 4666655433  344455555543


Q ss_pred             CceeEEEecCCcCcccChhh-----------------------hcCCCccEEEeeCCcccccCC------CCCcCcchhh
Q 044855           93 SQLKVLKLSDCQLHVIPSFL-----------------------LQQDHLKFLDLSHNKLVGNFP------ICGKMDDGLR  143 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~~~-----------------------~~~~~L~~L~l~~~~~~~~~~------~~~~~~~~~~  143 (279)
                       +|+.+.+... +..+....                       ..+.+++.+.+..........      ........+.
T Consensus       114 -~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          114 -DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             -CCSEEECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             -CcccccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence             5777766543 22222222                       223333333332211100000      0000011122


Q ss_pred             ccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc--Cc-------ccceEEEe
Q 044855          144 SSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS--LS-------SKLITLDL  210 (279)
Q Consensus       144 ~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~--~~-------~~L~~L~l  210 (279)
                      ....+..+.+...    ....+..+..++.+.+..+ +.......+..+..|+.+.+..+-  +.       .+|+.+.+
T Consensus       192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l  270 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNF  270 (379)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccc
Confidence            2222333333222    1233455677788777654 344455677888889888876541  11       16778877


Q ss_pred             ecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccccC
Q 044855          211 RDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWRE  279 (279)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~~  279 (279)
                      ..+ +......+|.+|++|+.+.+.++.++......|.+|.+|+.+++..+ ++..-..+|.+|+.|++
T Consensus       271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            543 33344567889999999999999888777888999999999999765 55455679999988864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=2.9e-09  Score=87.73  Aligned_cols=104  Identities=23%  Similarity=0.219  Sum_probs=89.1

Q ss_pred             cEEEeeCC-cccccCCccccCCCcCcEEeccC-cccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855           22 KVLDIFNN-QLSGNFPSTLTNFTSLEYLDLSS-INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK   99 (279)
Q Consensus        22 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   99 (279)
                      ..++.+++ .++ .+|. +..+++|++|+|++ |.+. ..+...+..+++|+.|++++|. +..++...|..+++|++|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEe
Confidence            35688887 888 6888 99999999999996 8887 5666789999999999999986 5667777889999999999


Q ss_pred             ecCCcCcccChhhhcCCCccEEEeeCCccc
Q 044855          100 LSDCQLHVIPSFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus       100 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  129 (279)
                      |++|.+..+|........|+.|++.+|.+.
T Consensus        87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            999999999876665555999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=8.6e-10  Score=91.06  Aligned_cols=76  Identities=16%  Similarity=0.203  Sum_probs=43.3

Q ss_pred             CCCCCceeEEEecCCcCc----------ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-
Q 044855           89 WHPTSQLKVLKLSDCQLH----------VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-  157 (279)
Q Consensus        89 ~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-  157 (279)
                      ...+++|+.|.+.+...+          .+...+..+|+|++|.++++.-.       .++. + .+++|+.|++..+- 
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-------~l~~-~-~~~~L~~L~L~~~~l  205 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-------SIGK-K-PRPNLKSLEIISGGL  205 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-------BCCS-C-BCTTCSEEEEECSBC
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-------eecc-c-cCCCCcEEEEecCCC
Confidence            345678888877654321          23345566788888888776211       1111 2 26677777776552 


Q ss_pred             Cc----cc--cCCCCCcEEEcc
Q 044855          158 PN----WI--GNISTLRVLLMS  173 (279)
Q Consensus       158 ~~----~~--~~~~~L~~L~l~  173 (279)
                      +.    .+  ..+++|+.|+++
T Consensus       206 ~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          206 PDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CHHHHHHHHHSBCTTCCEEEEE
T ss_pred             ChHHHHHHHHccCCCCcEEEEe
Confidence            11    12  256777877775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=3e-09  Score=87.85  Aligned_cols=205  Identities=18%  Similarity=0.150  Sum_probs=112.0

Q ss_pred             CCccEEEeeCCcccc-c-------CCccccCCCcCcEEeccCcccCc----c----cchhhhcccccceeeeecCCcccc
Q 044855           19 THLKVLDIFNNQLSG-N-------FPSTLTNFTSLEYLDLSSINFQG----T----FSINSLANHSKLEVLLLSSGSNML   82 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~l~~~~~~~----~----~~~~~~~~~~~L~~L~l~~~~~~~   82 (279)
                      ..++.|.+....+.+ .       +..+...+++|+.|.+.+.....    .    .....+..+++|+.|.++++... 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            446677776554331 1       12334567888888886543210    0    11234466788888888766311 


Q ss_pred             cccCCCCCCCCceeEEEecCCcCccc-Chhhh--cCCCccEEEeeCC--cccccCCCCCcCcchhhccCcccceeccCCC
Q 044855           83 QVKTESWHPTSQLKVLKLSDCQLHVI-PSFLL--QQDHLKFLDLSHN--KLVGNFPICGKMDDGLRSSTSLEGLDISGNI  157 (279)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~--~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  157 (279)
                      ..+.  + .+++|++|.+..+.+..- ...+.  .+|+|+.|+++.+  ...+..        .+.   .+         
T Consensus       186 ~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--------~~~---~l---------  242 (362)
T 2ra8_A          186 SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--------DMN---VF---------  242 (362)
T ss_dssp             BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--------CGG---GT---------
T ss_pred             eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--------hHH---HH---------
Confidence            2221  2 267888888877766321 11222  5788888887532  111000        000   00         


Q ss_pred             Cccc--cCCCCCcEEEccccEeeeecccccc---CCCCccEEeccCCcCcccceEEEeecCccCCCC----chhhhcCcC
Q 044855          158 PNWI--GNISTLRVLLMSKNYLEANIPVQLN---HLKSLELIDIFENSLSSKLITLDLRDNKFFGRI----PYQINELSN  228 (279)
Q Consensus       158 ~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~  228 (279)
                      ...+  ..+++|+.|.+.+|.+....+..+.   .+++|+              +|+++.|.+.+..    +..+..+++
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~--------------~LdLs~n~L~d~G~~~L~~~L~~l~~  308 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE--------------TMDISAGVLTDEGARLLLDHVDKIKH  308 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS--------------EEECCSSCCBHHHHHHHHTTHHHHTT
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC--------------EEECCCCCCChHHHHHHHhhcccCCc
Confidence            0111  2467888888888776543222222   244445              4555555544432    233356789


Q ss_pred             CcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855          229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       229 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      |+.|++++|.+++.....+...- -..++++++.
T Consensus       309 L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          309 LKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             ceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence            99999999998876666555411 3558888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=3.5e-09  Score=79.16  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=72.3

Q ss_pred             ccCCCCCcEEEcccc-Eeeee----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCC---
Q 044855          161 IGNISTLRVLLMSKN-YLEAN----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGR---  218 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~-~l~~~----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~---  218 (279)
                      +...+.|++|++++| .+...    +...+...++|++|++++|.+.+              +|++|++++|.+.+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            444566666666666 55431    23344556667777777776653              677888888887654   


Q ss_pred             -CchhhhcCcCCcEEEc--cCCcccccCC----hhhhcccCCcEEEccCCEee
Q 044855          219 -IPYQINELSNLHVLLL--RGNSLQGHIP----NELCQLAKLRIMDLSNNIFS  264 (279)
Q Consensus       219 -~~~~~~~~~~L~~L~l--~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~  264 (279)
                       +...+...++|++|++  ++|.+.+...    ..+...++|+.|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             3455667889999999  8899986643    44556689999999999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.61  E-value=3.4e-08  Score=72.25  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=54.6

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCcccchhhhccc----ccceeeeecCCcccccccCCCCCCCC
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQGTFSINSLANH----SKLEVLLLSSGSNMLQVKTESWHPTS   93 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~   93 (279)
                      .+|+.|++++|.++......+..+++|++|++++|. ++ ......+..+    +.|++|++++|..+++.....+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            457888888887776555667778888888888875 44 3233344442    46777777777655554444455566


Q ss_pred             ceeEEEecCCc
Q 044855           94 QLKVLKLSDCQ  104 (279)
Q Consensus        94 ~L~~L~l~~~~  104 (279)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777776663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=2.7e-08  Score=74.27  Aligned_cols=117  Identities=14%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             ccccCCCCccEEEeeCC-cccc----cCCccccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCcccccc
Q 044855           13 QCLNHLTHLKVLDIFNN-QLSG----NFPSTLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNMLQV   84 (279)
Q Consensus        13 ~~~~~l~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~   84 (279)
                      ..+...+.|++|+|++| .+..    .+...+...++|++|++++|.+.+...   ...+...+.|++|++++|......
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34566778888888887 7653    233445667788888888887753211   123445566777777776543221


Q ss_pred             ---cCCCCCCCCceeEEEe--cCCcCc-----ccChhhhcCCCccEEEeeCCccc
Q 044855           85 ---KTESWHPTSQLKVLKL--SDCQLH-----VIPSFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        85 ---~~~~~~~~~~L~~L~l--~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~  129 (279)
                         ....+...++|++|++  ++|.++     .+...+...++|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               2233455566777777  666663     23445555667777777776653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.49  E-value=6.7e-08  Score=70.72  Aligned_cols=85  Identities=9%  Similarity=0.043  Sum_probs=57.2

Q ss_pred             CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcC----cCCcEEEccCCc-c
Q 044855          165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINEL----SNLHVLLLRGNS-L  239 (279)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~L~~L~l~~n~-~  239 (279)
                      ..|+.|++++|.++......+..+++|+.|++++|.             .+++.....+..+    ++|++|++++|. +
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~-------------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH-------------YIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT-------------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC-------------ccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            468999999998877556666777777765555553             1333333344442    467788887774 7


Q ss_pred             cccCChhhhcccCCcEEEccCCE
Q 044855          240 QGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       240 ~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      ++.....+..+++|+.|++++|+
T Consensus       128 TD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          128 TDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CHHHHHHHhcCCCCCEEECCCCC
Confidence            77766777777788888888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=8.1e-08  Score=75.49  Aligned_cols=83  Identities=19%  Similarity=0.113  Sum_probs=47.1

Q ss_pred             cCCCcCcEEeccCcccCcccc-hhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCc-ccC-------h
Q 044855           40 TNFTSLEYLDLSSINFQGTFS-INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIP-------S  110 (279)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~-------~  110 (279)
                      .++++|++|++++|.+.+... ...+..+++|+.|++++|..........+..+ +|++|++.+|.+. .++       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            346666677777666653221 12345666667777666654332222223333 7788888888773 333       2


Q ss_pred             hhhcCCCccEEEe
Q 044855          111 FLLQQDHLKFLDL  123 (279)
Q Consensus       111 ~~~~~~~L~~L~l  123 (279)
                      .+..+|+|+.|+-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3556788887653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=1.5e-06  Score=68.29  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=18.6

Q ss_pred             CCCCCcEEEccccEeeee--ccccccCCCCccEEeccCCc
Q 044855          163 NISTLRVLLMSKNYLEAN--IPVQLNHLKSLELIDIFENS  200 (279)
Q Consensus       163 ~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~l~l~~~~  200 (279)
                      .++.|+.|++++|.+++.  ++..+..+++|+.|++++|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            345666666666665551  22334445555544444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.63  E-value=3.3e-05  Score=57.54  Aligned_cols=102  Identities=10%  Similarity=0.070  Sum_probs=66.5

Q ss_pred             cCCCCCcEEEcccc-Eeee----eccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCCC---
Q 044855          162 GNISTLRVLLMSKN-YLEA----NIPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGRI---  219 (279)
Q Consensus       162 ~~~~~L~~L~l~~~-~l~~----~~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~~---  219 (279)
                      .+-+.|+.|+++++ .+..    .+...+...+.|+.|++++|.+.+              .|+.|+|++|.|.+..   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456777777664 5433    233445566677777777777764              7788888888876543   


Q ss_pred             -chhhhcCcCCcEEEccCC---ccccc----CChhhhcccCCcEEEccCCEe
Q 044855          220 -PYQINELSNLHVLLLRGN---SLQGH----IPNELCQLAKLRIMDLSNNIF  263 (279)
Q Consensus       220 -~~~~~~~~~L~~L~l~~n---~~~~~----~~~~~~~~~~L~~L~l~~n~l  263 (279)
                       .+++.....|++|+++++   .+.+.    +.+.+..-++|..|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             334555677999999765   44432    444566678888998887764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.26  E-value=0.00024  Score=52.88  Aligned_cols=81  Identities=15%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             ccccccCCCCccEEeccCC-cCcc--------------cceEEEeecCccCCC----CchhhhcCcCCcEEEccCCcccc
Q 044855          181 IPVQLNHLKSLELIDIFEN-SLSS--------------KLITLDLRDNKFFGR----IPYQINELSNLHVLLLRGNSLQG  241 (279)
Q Consensus       181 ~~~~l~~~~~L~~l~l~~~-~~~~--------------~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~  241 (279)
                      +...+..-+.|+.|+++++ .+.+              .|+.|+|++|++.+.    +.+.+...+.|+.|+|+.|.|.+
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3345567789999999986 7664              899999999999754    34455677899999999999987


Q ss_pred             cCChh----hhcccCCcEEEccCC
Q 044855          242 HIPNE----LCQLAKLRIMDLSNN  261 (279)
Q Consensus       242 ~~~~~----~~~~~~L~~L~l~~n  261 (279)
                      .....    +..-+.|+.|++++|
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCC
Confidence            65554    445678999999876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.90  E-value=0.0013  Score=45.64  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=24.2

Q ss_pred             cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855          204 KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ  240 (279)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (279)
                      +++.|+|++|+++..-+..|..+++|+.|+|++|++.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555666666665555556677777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0036  Score=43.31  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=27.8

Q ss_pred             CccEEEeeCCcccccCCccccCCCcCcEEeccCcccC
Q 044855           20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ   56 (279)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   56 (279)
                      +|++|+|++|.++...+..|..+++|++|+|.+|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5788888888887555566777888888888887664

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=90.87  E-value=0.33  Score=31.55  Aligned_cols=49  Identities=16%  Similarity=0.114  Sum_probs=38.6

Q ss_pred             CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCc
Q 044855            4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSI   53 (279)
Q Consensus         4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   53 (279)
                      +..++.+...+|..|..|+.+.|..+- +.....+|.++.+|+.+.+.+.
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence            456777788899999999999998763 3355668889999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 4e-13
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 13/267 (4%)

Query: 16  NHLTHLKVLDIFNNQLSGNF--PSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVL 73
                +  LD+    L   +  PS+L N   L +L +  IN        ++A  ++L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 74  LLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFP 133
            ++  +    +        + + +    +     +P  +    +L  +    N++ G  P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 134 ICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVL--------LMSKNYLEANIPVQL 185
                   L +S ++    ++G IP    N++   V           S  +       ++
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 186 NHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 245
           +  K+    D+ +  LS  L  LDLR+N+ +G +P  + +L  LH L +  N+L G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 246 ELCQLAKLRIMDLSNNIF--SGSIPSC 270
           +   L +  +   +NN       +P+C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLS 51
           DL +N   G LPQ L  L  L  L++  N L G  P    N    +    +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 10  HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSK 69
                +    +L  LD+ NN++ G  P  LT    L  L++S  N  G   I    N  +
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQR 292

Query: 70  LEVLLLS 76
            +V   +
Sbjct: 293 FDVSAYA 299

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 48/261 (18%), Positives = 97/261 (37%), Gaps = 22/261 (8%)

Query: 10  HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSK 69
            L    N ++ +  L    +    +F + +T+   L  L         +  ++ ++  +K
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 70  LEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLV 129
           L  L     +N            + L  L L+  QL  I +      +L  LDL++N++ 
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQIS 254

Query: 130 GNFPICGKMDDGLRSSTSLEGLDISG-NIPNWIGNISTLRVLLMSKNYLEANIPVQLNHL 188
              P+ G         T L  L +    I N         +  +  N  +      +++L
Sbjct: 255 NLAPLSG--------LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 189 KSLELIDIFENSLS--------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240
           K+L  + ++ N++S        +KL  L   +NK        +  L+N++ L    N + 
Sbjct: 307 KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 241 GHIPNELCQLAKLRIMDLSNN 261
              P  L  L ++  + L++ 
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
            L  NN     P  ++ LT L+ L   NN++S    S+L N T++ +L            
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD--- 365

Query: 61  INSLANHSKLEVLLLSS 77
           +  LAN +++  L L+ 
Sbjct: 366 LTPLANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 8e-08
 Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 25/260 (9%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
               +LD+ NN+++        N  +L  L L +          + A   KLE L L S 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYL-SK 88

Query: 79  SNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKM 138
           + + ++  +      +L+V +    ++       L Q  +  L  +  K  G        
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN----- 143

Query: 139 DDGLRSSTSLEGLDISGNIPNWI--GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDI 196
               +    L  + I+      I  G   +L  L +  N +       L  L +L  + +
Sbjct: 144 -GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 197 FENSLSSKLITLDLRD---------NKFFGRIPYQINELSNLHVLLLRGNSLQG------ 241
             NS+S+                  N    ++P  + +   + V+ L  N++        
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 242 HIPNELCQLAKLRIMDLSNN 261
             P    + A    + L +N
Sbjct: 263 CPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 50/261 (19%), Positives = 92/261 (35%), Gaps = 33/261 (12%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLS--------- 51
           DL +N           +L +L  L + NN++S   P        LE L LS         
Sbjct: 37  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96

Query: 52  -----------SINFQGTFSINSLANHSKLEVLLLSSGSNM-LQVKTESWHPTSQLKVLK 99
                        N       +     +++ V+ L +       ++  ++    +L  ++
Sbjct: 97  KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156

Query: 100 LSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN 159
           ++D  +  IP  L     L  L L  NK+        K  + L     L    IS     
Sbjct: 157 IADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLA-KLGLSFNSISAVDNG 213

Query: 160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRI 219
            + N   LR L ++ N L   +P  L   K ++++ +  N++S+      +  N F    
Sbjct: 214 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA------IGSNDFCP-- 264

Query: 220 PYQINELSNLHVLLLRGNSLQ 240
           P    + ++   + L  N +Q
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 20/71 (28%), Positives = 25/71 (35%)

Query: 200 SLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLS 259
            L      LDL++NK           L NLH L+L  N +    P     L KL  + LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 260 NNIFSGSIPSC 270
            N         
Sbjct: 88  KNQLKELPEKM 98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 9/201 (4%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           +    N    LP  L       +L +  N L     +TL  +T L  L+L          
Sbjct: 16  NCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
             +L     L++      S  L  +T        +   +L+   L  +      Q+    
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN 180
            +       G      K++    ++ +L  L         +  +  L  LL+ +N L   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTEL-----PAGLLNGLENLDTLLLQENSL-YT 186

Query: 181 IPVQLNHLKSLELIDIFENSL 201
           IP        L    +  N  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 47/258 (18%), Positives = 82/258 (31%), Gaps = 17/258 (6%)

Query: 19  THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78
              + + +  N++S    ++     +L  L L S       +          ++  LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL-DLSDN 90

Query: 79  SNMLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGK 137
           + +  V   ++H   +L  L L  C L  + P        L++L L  N L        +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 138 MDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIF 197
               L     L G  IS         + +L  LL+ +N +    P     L  L  + +F
Sbjct: 151 DLGNLT-HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 198 EN----------SLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL 247
            N          +    L  L L DN +           + L       + +   +P   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQR- 267

Query: 248 CQLAKLRIMDLSNNIFSG 265
             LA   +  L+ N   G
Sbjct: 268 --LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 39/246 (15%), Positives = 72/246 (29%), Gaps = 14/246 (5%)

Query: 42  FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS 101
             + + + L         +  S      L +L L S                  ++    
Sbjct: 31  PAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 102 DCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW 160
           + QL  + P+       L  L L    L    P   +    L+    L+   +     + 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY-LYLQDNALQALPDDT 148

Query: 161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDL 210
             ++  L  L +  N + +        L SL+ + + +N ++           +L+TL L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 211 RDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC 270
             N         +  L  L  L L  N             A L+    S++    S+P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 271 LGNVSF 276
           L     
Sbjct: 268 LAGRDL 273

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 12/195 (6%)

Query: 93  SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLD 152
                       L  +P  +      + + L  N++        +    L        + 
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 153 ISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDI----------FENSLS 202
              +   + G     ++ L     L +  P   + L  L  + +                
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 203 SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI 262
           + L  L L+DN           +L NL  L L GN +          L  L  + L  N 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 263 FSGSIPSCLGNVSFW 277
            +   P    ++   
Sbjct: 189 VAHVHPHAFRDLGRL 203

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 2/132 (1%)

Query: 2   LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSI 61
           L  N  +         L +L  L +  N++S           SL+ L L           
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP- 194

Query: 62  NSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFL 121
                     + L    +N+  + TE+  P   L+ L+L+D               L+  
Sbjct: 195 -HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253

Query: 122 DLSHNKLVGNFP 133
             S +++  + P
Sbjct: 254 RGSSSEVPCSLP 265

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 9/115 (7%)

Query: 1   DLSSNNF-EGHLPQCLNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINF 55
           D+      +    + L  L   +V+ + +  L+     +  S L    +L  L+L S   
Sbjct: 8   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 56  QGT----FSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH 106
                            K++ L L +                 L  L+      +
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 44/274 (16%), Positives = 85/274 (31%), Gaps = 12/274 (4%)

Query: 1   DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS 60
           DL+  N    +   L     +       + +        +    ++++DLS+   + +  
Sbjct: 6   DLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTL 63

Query: 61  INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120
              L+  SKL+  L   G  +      +    S L  L LS C      +          
Sbjct: 64  HGILSQCSKLQN-LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN 180
           LD  +     +F            S ++  L++SG   N   +  +              
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-----TLVRRCPNL 177

Query: 181 IPVQLNHLKSLELIDIFENSLSSKLITLDLRD-NKFFGRIPYQINELSNLHVLLLRGNSL 239
           + + L+    L+     E    + L  L L            ++ E+  L  L + G   
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237

Query: 240 QGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273
            G +      L  L+I   + + F+      +GN
Sbjct: 238 DGTLQLLKEALPHLQI---NCSHFTTIARPTIGN 268

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQINE 225
              N     I    +   SLE +++  N L        +L  L    N     +P     
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHL-AEVP---EL 322

Query: 226 LSNLHVLLLRGNSLQGHIPNELCQLAKLRI 255
             NL  L +  N L+   P+    +  LR+
Sbjct: 323 PQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=5.6e-27  Score=189.66  Aligned_cols=232  Identities=28%  Similarity=0.376  Sum_probs=121.6

Q ss_pred             CCCCcCcC--CCCccccCCCCccEEEeeC-CcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCC
Q 044855            2 LSSNNFEG--HLPQCLNHLTHLKVLDIFN-NQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG   78 (279)
Q Consensus         2 l~~~~l~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   78 (279)
                      |+++.+.+  .+|.++.++++|++|+|++ |.+++.+|..|.++++|++|++++|.+. ......+..+..|+.+++++|
T Consensus        57 L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSS
T ss_pred             CCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccc-ccccccccchhhhcccccccc
Confidence            34444444  2455555555555555554 4555555555555555555555555554 222234455555555555555


Q ss_pred             cccccccCCCCCCCCceeEEEecCCcC-cccChhhhcCCCc-cEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC
Q 044855           79 SNMLQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHL-KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN  156 (279)
Q Consensus        79 ~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  156 (279)
                      .....++ ..+..+++++++++++|.+ ..+|..+..+.++ +.+.+++|.+.+..                        
T Consensus       136 ~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~------------------------  190 (313)
T d1ogqa_         136 ALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI------------------------  190 (313)
T ss_dssp             EEESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC------------------------
T ss_pred             cccccCc-hhhccCcccceeeccccccccccccccccccccccccccccccccccc------------------------
Confidence            4332222 2345555555555555555 2445544444443 45555555544222                        


Q ss_pred             CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCc
Q 044855          157 IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELS  227 (279)
Q Consensus       157 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~  227 (279)
                       +..+..+. ...+++..+...+..+..+..+++++.+++.++.+..         +++.|++++|++++.+|..+.+++
T Consensus       191 -~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~  268 (313)
T d1ogqa_         191 -PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             -CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             -cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCC
Confidence             22222222 2234444444444444444444444444444333221         444555566666666777777777


Q ss_pred             CCcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855          228 NLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI  262 (279)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (279)
                      +|+.|++++|++++.+|. +..+++|+.+++++|+
T Consensus       269 ~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         269 FLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             TCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            777777777777766664 3566777777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=8.6e-25  Score=176.69  Aligned_cols=229  Identities=25%  Similarity=0.370  Sum_probs=159.9

Q ss_pred             CccEEEeeCCcccc--cCCccccCCCcCcEEeccC-cccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCcee
Q 044855           20 HLKVLDIFNNQLSG--NFPSTLTNFTSLEYLDLSS-INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLK   96 (279)
Q Consensus        20 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   96 (279)
                      +++.|+|+++.+.+  .+|..+.++++|++|++++ |.+.+.++ ..+.++++|++|++++|.. .......+..+..|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-~~i~~L~~L~~L~Ls~N~l-~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECC-EEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc-cccccccccchhhhccccc-cccccccccchhhhc
Confidence            46667777766654  3566666777777777765 45543333 3456666666666665543 223333445556666


Q ss_pred             EEEecCCcC-cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCC-cEEEccc
Q 044855           97 VLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTL-RVLLMSK  174 (279)
Q Consensus        97 ~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L-~~L~l~~  174 (279)
                      .+++.+|.+ ..+|..+..+++++.+++++|.+.+.                         +|..+..+..+ +.+++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~-------------------------ip~~~~~l~~l~~~l~~~~  183 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-------------------------IPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-------------------------CCGGGGCCCTTCCEEECCS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccc-------------------------ccccccccccccccccccc
Confidence            666666554 44555556666666666666554421                         45556666554 8899999


Q ss_pred             cEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855          175 NYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP  244 (279)
Q Consensus       175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (279)
                      |.+++..+..+..+..+ .+++..+....          +++.++++++.+.+.++ .+..+++|+.|++++|++++.+|
T Consensus       184 n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP  261 (313)
T d1ogqa_         184 NRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCC
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCC
Confidence            99998888877776554 68887775432          78999999999977655 57788999999999999999999


Q ss_pred             hhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          245 NELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       245 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ..++.+++|++|++++|+++|.+|+ +++++.|+
T Consensus       262 ~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~  294 (313)
T d1ogqa_         262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFD  294 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCC-STTGGGSC
T ss_pred             hHHhCCCCCCEEECcCCcccccCCC-cccCCCCC
Confidence            9999999999999999999999996 56666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=2.3e-23  Score=172.65  Aligned_cols=253  Identities=23%  Similarity=0.248  Sum_probs=178.4

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++++.++..  +.+.++++|++|++++|++++ ++ .+.++++|++|++++|.+.+.   ..+.++++|+.++++++...
T Consensus        51 l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i---~~l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2          51 ADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             CCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc---cccccccccccccccccccc
Confidence            566777643  467888999999999998884 44 388889999999999888633   24677788888877654321


Q ss_pred             cccc--------------------------------------------------------------CCCCCCCCceeEEE
Q 044855           82 LQVK--------------------------------------------------------------TESWHPTSQLKVLK   99 (279)
Q Consensus        82 ~~~~--------------------------------------------------------------~~~~~~~~~L~~L~   99 (279)
                      ....                                                              ...+..+++++.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  203 (384)
T d2omza2         124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI  203 (384)
T ss_dssp             CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceee
Confidence            1000                                                              01223345666666


Q ss_pred             ecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC---ccccCCCCCcEEEccccE
Q 044855          100 LSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSKNY  176 (279)
Q Consensus       100 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~~~  176 (279)
                      ++++.++.++. ...+++|+.|++++|.+.+        ...+..+++++.++++++-.   ..++.+++|+.|+++++.
T Consensus       204 l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         204 ATNNQISDITP-LGILTNLDELSLNGNQLKD--------IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             CCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             ccCCccCCCCc-ccccCCCCEEECCCCCCCC--------cchhhcccccchhccccCccCCCCcccccccCCEeeccCcc
Confidence            66666655543 3445677777777776542        13466677788888776622   235667788888888887


Q ss_pred             eeeeccccccCCCCccEEeccCCcCcc--------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhh
Q 044855          177 LEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELC  248 (279)
Q Consensus       177 l~~~~~~~l~~~~~L~~l~l~~~~~~~--------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  248 (279)
                      ++...  .+..++.++.+.+..+.+..        +++.|++++|++.+..  .+..+++|+.|++++|++++ ++ .+.
T Consensus       275 l~~~~--~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~  348 (384)
T d2omza2         275 ISNIS--PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLA  348 (384)
T ss_dssp             CCCCG--GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGG
T ss_pred             cCCCC--ccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHc
Confidence            76532  35677778888887777653        8899999999997643  37889999999999999984 33 688


Q ss_pred             cccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          249 QLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       249 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      .+++|+.|++++|++++..|  +.+++.|+
T Consensus       349 ~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         349 NLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             GCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             CCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            99999999999999995443  78888776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.6e-23  Score=164.14  Aligned_cols=246  Identities=22%  Similarity=0.233  Sum_probs=152.0

Q ss_pred             CCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855            3 SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML   82 (279)
Q Consensus         3 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   82 (279)
                      ++..++ .+|..+.  +++++|+|++|+++...+..|.++++|++|++++|.+. .+....+..+..++.+.........
T Consensus        19 ~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          19 PQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             CSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             CCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccc
Confidence            344555 4454443  56899999999998666678999999999999999887 5555677778888888877666677


Q ss_pred             cccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----
Q 044855           83 QVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----  156 (279)
Q Consensus        83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----  156 (279)
                      .+....+..+++|++|++++|.+..++. .+...++|+.+++++|.+....      ...+....+|+.|+++++     
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~------~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP------DDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccC------hhHhccccchhhcccccCccccc
Confidence            7777788899999999999998876654 4556788999999998876322      223444444555555444     


Q ss_pred             CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccC
Q 044855          157 IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRG  236 (279)
Q Consensus       157 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  236 (279)
                      .+..+..+++|+.+++++|.++...|..|..+++|+              +|++++|++.+..+.++..+++|+.|++++
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~--------------~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM--------------TLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC--------------EEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcc--------------cccccccccccccccccccccccCEEEecC
Confidence            123344445555555555555444444444444433              333344444444555566666666666666


Q ss_pred             CcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855          237 NSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN  273 (279)
Q Consensus       237 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  273 (279)
                      |++...... ..-...++......+.++...|..+.+
T Consensus       235 N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         235 NPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             SCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             CCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHHcC
Confidence            665532111 011112333444444555555555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.3e-22  Score=160.76  Aligned_cols=260  Identities=21%  Similarity=0.266  Sum_probs=198.6

Q ss_pred             CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855            4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ   83 (279)
Q Consensus         4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   83 (279)
                      +..++ .+|..+.  +++++|+|++|+++...+..|.++++|++|++++|.+. ......+..++.|++|++++|. +..
T Consensus        19 ~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~-l~~   93 (305)
T d1xkua_          19 DLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ-LKE   93 (305)
T ss_dssp             TSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSC-CSB
T ss_pred             CCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCc-cCc
Confidence            34566 4555553  67999999999999555557999999999999999988 5555778899999999999886 344


Q ss_pred             ccCCCCCCCCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc-
Q 044855           84 VKTESWHPTSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI-  161 (279)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-  161 (279)
                      ++.   .....++.+.+.++.+..++.. +........+....+.....    ......+..+++|+.+++.++-...+ 
T Consensus        94 l~~---~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          94 LPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----GIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             CCS---SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----GBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             Ccc---chhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----CCCccccccccccCccccccCCccccC
Confidence            443   2345788999999988877764 34567778888877654322    13345677888999999987733222 


Q ss_pred             -cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCc
Q 044855          162 -GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLH  230 (279)
Q Consensus       162 -~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~  230 (279)
                       ...++|+.|++++|..+...+..+..++.++.|++++|.+..          +|++|++++|+++ .+|.++..+++|+
T Consensus       167 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         167 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC
Confidence             346889999999999888788889999999999999998764          8999999999986 4677899999999


Q ss_pred             EEEccCCcccccCChhh------hcccCCcEEEccCCEee--eecCccccCCcc
Q 044855          231 VLLLRGNSLQGHIPNEL------CQLAKLRIMDLSNNIFS--GSIPSCLGNVSF  276 (279)
Q Consensus       231 ~L~l~~n~~~~~~~~~~------~~~~~L~~L~l~~n~l~--~~~p~~~~~~~~  276 (279)
                      .|++++|+++......|      ...++|+.|++++|++.  ..-|.+|.-++.
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence            99999999985544433      34688999999999975  344455555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=2.4e-21  Score=160.37  Aligned_cols=240  Identities=25%  Similarity=0.322  Sum_probs=187.3

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccc--------------------
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS--------------------   60 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------   60 (279)
                      ||++|++++..  .++++++|++|++++|.+.+ ++ .+..+++|++|+++++.+.+...                    
T Consensus        72 ~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  147 (384)
T d2omza2          72 NFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI  147 (384)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC
T ss_pred             eCcCCcCCCCc--cccCCccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            58899999654  39999999999999999984 33 38899999999998876642100                    


Q ss_pred             ------------------------------------------hhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           61 ------------------------------------------INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        61 ------------------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                                                                ......++.++.+.++++.... +.  .+...++|+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~-~~--~~~~~~~L~~L  224 (384)
T d2omza2         148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-IT--PLGILTNLDEL  224 (384)
T ss_dssp             GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG--GGGGCTTCCEE
T ss_pred             ccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCC-CC--cccccCCCCEE
Confidence                                                      0123445566677776664322 22  13567899999


Q ss_pred             EecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---CccccCCCCCcEEEcccc
Q 044855           99 KLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---PNWIGNISTLRVLLMSKN  175 (279)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~L~~L~l~~~  175 (279)
                      ++++|.++.++ .+..+++++.+++++|.+.+.        ..+..+++|+.++++++-   ...+..++.++.+.+..|
T Consensus       225 ~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n  295 (384)
T d2omza2         225 SLNGNQLKDIG-TLASLTNLTDLDLANNQISNL--------APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN  295 (384)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC--------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             ECCCCCCCCcc-hhhcccccchhccccCccCCC--------CcccccccCCEeeccCcccCCCCcccccccccccccccc
Confidence            99999998775 567889999999999987632        246778899999998772   234667889999999999


Q ss_pred             EeeeeccccccCCCCccEEeccCCcCcc--------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhh
Q 044855          176 YLEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL  247 (279)
Q Consensus       176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~--------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  247 (279)
                      .+..  ...+..+++++.+++++|.+..        +|+.|++++|++++ ++ .+.++++|+.|++++|++++..|  +
T Consensus       296 ~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l  369 (384)
T d2omza2         296 QLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--L  369 (384)
T ss_dssp             CCSC--CGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--G
T ss_pred             cccc--ccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--h
Confidence            8876  2347888999999999998765        89999999999865 33 58899999999999999996544  7


Q ss_pred             hcccCCcEEEccCCE
Q 044855          248 CQLAKLRIMDLSNNI  262 (279)
Q Consensus       248 ~~~~~L~~L~l~~n~  262 (279)
                      .++++|+.|+|++|.
T Consensus       370 ~~l~~L~~L~L~~Na  384 (384)
T d2omza2         370 ANLTRITQLGLNDQA  384 (384)
T ss_dssp             TTCTTCSEEECCCEE
T ss_pred             ccCCCCCEeeCCCCc
Confidence            889999999999983

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.1e-22  Score=157.56  Aligned_cols=195  Identities=21%  Similarity=0.234  Sum_probs=164.6

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|+++...+.+|..+++|++|+++++.+....+..+..++.++.+.+..+......+...+.++++|+.|+++++..
T Consensus        38 ~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~  117 (284)
T d1ozna_          38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL  117 (284)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCccc
Confidence            58999999888889999999999999999999778888888999999987655444466677889999999999998863


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC---
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---  156 (279)
                       ..+....+...++|+.+++.+|.++.++. .+..+++|+.|++++|.+....      +..+.++++|+.++++++   
T Consensus       118 -~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~------~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         118 -QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             -CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCCC
T ss_pred             -ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc------hhhhccccccchhhhhhcccc
Confidence             45566677889999999999999988875 5667899999999999887332      367788999999999977   


Q ss_pred             --CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855          157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       157 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  202 (279)
                        .+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence              4677889999999999999999877788999999988888777643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=8.6e-21  Score=152.40  Aligned_cols=237  Identities=19%  Similarity=0.206  Sum_probs=162.8

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|+++...+.+|..+++|++|++++|.+....|..|.++++|++|++++|.+. .++.   .....+..|....+..
T Consensus        37 ~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~---~~~~~l~~L~~~~n~l  112 (305)
T d1xkua_          37 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE---KMPKTLQELRVHENEI  112 (305)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCS---SCCTTCCEEECCSSCC
T ss_pred             ECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCcc---chhhhhhhhhccccch
Confidence            58899999777789999999999999999999777888999999999999999887 3332   2234666676666542


Q ss_pred             cccccCCCCCCCCceeEEEecCCcC---cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQL---HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-  156 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-  156 (279)
                       ..+....+.....++.+....+..   ...+..+..+++|+.++++++.+...       +..  .+++++.++++++ 
T Consensus       113 -~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-------~~~--~~~~L~~L~l~~n~  182 (305)
T d1xkua_         113 -TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-------PQG--LPPSLTELHLDGNK  182 (305)
T ss_dssp             -CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-------CSS--CCTTCSEEECTTSC
T ss_pred             -hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-------Ccc--cCCccCEEECCCCc
Confidence             233333344555666666666543   22334556667777777777765421       111  2456777777665 


Q ss_pred             ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchh-
Q 044855          157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQ-  222 (279)
Q Consensus       157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~-  222 (279)
                          .+..+..++.+++|++++|.+....+..+.++++|++|++++|.+..         +|+.|++++|++...-... 
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhc
Confidence                34556667777777777777777666677777778888777776543         7778888888776432222 


Q ss_pred             -----hhcCcCCcEEEccCCccc--ccCChhhhccc
Q 044855          223 -----INELSNLHVLLLRGNSLQ--GHIPNELCQLA  251 (279)
Q Consensus       223 -----~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~  251 (279)
                           ....++|+.+++++|++.  ...|..|..+.
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~  298 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  298 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             cCcchhcccCCCCEEECCCCcCccCcCCHhHhcccc
Confidence                 345788999999999875  23454554433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-21  Score=151.02  Aligned_cols=202  Identities=25%  Similarity=0.253  Sum_probs=120.2

Q ss_pred             cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      .+...+.+++-++++++ .+|..+.  +++++|++++|.++ .++...+.++++|++|++++|.. ..++.  +..+++|
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l-~~l~~--~~~l~~L   79 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL-TKLQV--DGTLPVL   79 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCC-CEEEC--CSCCTTC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccc-ccccc--ccccccc
Confidence            34455556666666666 4555442  46777777777776 44555667777777777777653 33332  4567788


Q ss_pred             eEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEcccc
Q 044855           96 KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKN  175 (279)
Q Consensus        96 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~  175 (279)
                      ++|++++|.+..++..+..+++|+.|+++++.+....                         +..+..+.+++.|++++|
T Consensus        80 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-------------------------~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-------------------------LGALRGLGELQELYLKGN  134 (266)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-------------------------SSTTTTCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccceee-------------------------cccccccccccccccccc
Confidence            8888888887777777777788888888877654211                         123344455666666666


Q ss_pred             EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcE
Q 044855          176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRI  255 (279)
Q Consensus       176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  255 (279)
                      .++...+..+..+++++.+++++|              ++++..+..+..+++|++|++++|+++ .+|..+..+++|+.
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~  199 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANN--------------NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF  199 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTS--------------CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred             ccceeccccccccccchhcccccc--------------cccccCccccccccccceeecccCCCc-ccChhHCCCCCCCE
Confidence            655544444444554443333333              333344444555566666666666665 45555555666666


Q ss_pred             EEccCCEee
Q 044855          256 MDLSNNIFS  264 (279)
Q Consensus       256 L~l~~n~l~  264 (279)
                      |++++|++.
T Consensus       200 L~L~~Np~~  208 (266)
T d1p9ag_         200 AFLHGNPWL  208 (266)
T ss_dssp             EECCSCCBC
T ss_pred             EEecCCCCC
Confidence            666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-19  Score=142.09  Aligned_cols=185  Identities=22%  Similarity=0.166  Sum_probs=125.6

Q ss_pred             cccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhcc
Q 044855           67 HSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSS  145 (279)
Q Consensus        67 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  145 (279)
                      ...+.+++.+++. ...+|...   .+++++|++++|.++.++. .+..+++|++|++++|.+....        .+..+
T Consensus         9 ~~~~~~v~C~~~~-L~~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--------~~~~l   76 (266)
T d1p9ag_           9 VASHLEVNCDKRN-LTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--------VDGTL   76 (266)
T ss_dssp             STTCCEEECTTSC-CSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--------CCSCC
T ss_pred             cCCCeEEEccCCC-CCeeCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--------ccccc
Confidence            3444555665543 33444322   1478888999888887764 5677888999999888765211        12334


Q ss_pred             CcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCch
Q 044855          146 TSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPY  221 (279)
Q Consensus       146 ~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~  221 (279)
                      ++|+.|+++++    .+..+..+++|+.|+++++.+....+..+..++              +++.|++++|.+....+.
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--------------~l~~L~l~~n~l~~l~~~  142 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--------------ELQELYLKGNELKTLPPG  142 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT--------------TCCEEECTTSCCCCCCTT
T ss_pred             ccccccccccccccccccccccccccccccccccccceeecccccccc--------------ccccccccccccceeccc
Confidence            55555555544    233344455555555555554443333344444              455666666666666667


Q ss_pred             hhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          222 QINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      .+..++.++.+++++|++++..+..+..+++|+.|++++|.++ .+|+.+..++.|+
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC
Confidence            7788999999999999999888888999999999999999999 9999888887775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.8e-18  Score=131.61  Aligned_cols=190  Identities=21%  Similarity=0.265  Sum_probs=97.8

Q ss_pred             ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855           15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ   94 (279)
Q Consensus        15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~   94 (279)
                      ++.+.+|++|++.+|.++ .+ ..+..+++|++|++++|.+.+.   ..+..+++++.++++++... .+  ..+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~~---~~l~~l~~l~~l~~~~n~~~-~i--~~l~~l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITDL---APLKNLTKITELELSGNPLK-NV--SAIAGLQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCC---GGGTTCCSCCEEECCSCCCS-CC--GGGTTCTT
T ss_pred             HHHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeecc---cccccccccccccccccccc-cc--cccccccc
Confidence            344556666666666555 23 2355566666666666655421   12444555555555444321 11  12334445


Q ss_pred             eeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccc
Q 044855           95 LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSK  174 (279)
Q Consensus        95 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~  174 (279)
                      |+.+.++++....++ .+...+.++.+.++++.+.                           ....+..+++|+.|++++
T Consensus       109 L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~---------------------------~~~~~~~~~~L~~L~l~~  160 (227)
T d1h6ua2         109 IKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQIT---------------------------NISPLAGLTNLQYLSIGN  160 (227)
T ss_dssp             CCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCC---------------------------CCGGGGGCTTCCEEECCS
T ss_pred             ccccccccccccccc-hhccccchhhhhchhhhhc---------------------------hhhhhccccccccccccc
Confidence            555555444433222 1223344444444433322                           112344566677777777


Q ss_pred             cEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCc
Q 044855          175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLR  254 (279)
Q Consensus       175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  254 (279)
                      |.+....  .+.++++|+.|++++|              ++.+ ++ .+..+++|++|++++|++++..  .+..+++|+
T Consensus       161 n~~~~~~--~l~~l~~L~~L~Ls~n--------------~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~  220 (227)
T d1h6ua2         161 AQVSDLT--PLANLSKLTTLKADDN--------------KISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLF  220 (227)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSS--------------CCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred             cccccch--hhcccccceecccCCC--------------ccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCC
Confidence            7665422  2555665555444444              3322 22 3567788888888888877432  366778888


Q ss_pred             EEEccC
Q 044855          255 IMDLSN  260 (279)
Q Consensus       255 ~L~l~~  260 (279)
                      .|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            887763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.2e-18  Score=131.39  Aligned_cols=203  Identities=15%  Similarity=0.130  Sum_probs=121.6

Q ss_pred             CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855           19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL   98 (279)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   98 (279)
                      +++++|++++|.++...+.+|.++++|++|++++|.+...++...+..++.++++.+..+..........+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            46777777777776444456777777777777777766555555666677777776665544555555666667777777


Q ss_pred             EecCCcCcccCh--hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCC-CCCcEEEcccc
Q 044855           99 KLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNI-STLRVLLMSKN  175 (279)
Q Consensus        99 ~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~L~~L~l~~~  175 (279)
                      +++++.+...+.  ....+..+..+...++.+....                         ...+..+ ..+..+++.+|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~-------------------------~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-------------------------RNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC-------------------------TTSSTTSBSSCEEEECCSS
T ss_pred             ccchhhhccccccccccccccccccccccccccccc-------------------------ccccccccccceeeecccc
Confidence            777776654432  2223334443333333322110                         1223333 46778888888


Q ss_pred             EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcE
Q 044855          176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRI  255 (279)
Q Consensus       176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  255 (279)
                      .++...+..+ ..+++..+             +.+.+|++.+..+..|.++++|+.|++++|+++...+..+..++.|+.
T Consensus       164 ~l~~i~~~~~-~~~~l~~~-------------~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         164 GIQEIHNCAF-NGTQLDEL-------------NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             CCCEECTTTT-TTCCEEEE-------------ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             cccccccccc-cchhhhcc-------------ccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            8877444333 33333332             223444454444456788999999999999998555656677666666


Q ss_pred             EEccC
Q 044855          256 MDLSN  260 (279)
Q Consensus       256 L~l~~  260 (279)
                      +++.+
T Consensus       230 l~~~~  234 (242)
T d1xwdc1         230 RSTYN  234 (242)
T ss_dssp             SSEES
T ss_pred             CcCCC
Confidence            65544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=6.2e-17  Score=131.80  Aligned_cols=66  Identities=23%  Similarity=0.329  Sum_probs=52.8

Q ss_pred             cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          204 KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       204 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      +|++|++++|++. .+|.   .+++|+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|+...++..||
T Consensus       285 ~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~~~~L~~L~  350 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESVEDLR  350 (353)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred             CCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCccccccCeeE
Confidence            7999999999886 3443   3678999999999998 4554   2467999999999988 8888777777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-16  Score=122.68  Aligned_cols=215  Identities=14%  Similarity=0.133  Sum_probs=149.0

Q ss_pred             cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855           22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS  101 (279)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  101 (279)
                      +.++.++..++ .+|..+.  +++++|++++|.+. .++...+.++++|++|++++|.....++...|..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            67788888777 6666542  58999999999987 66667788999999999999887667777788889999999876


Q ss_pred             C-CcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeee
Q 044855          102 D-CQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA  179 (279)
Q Consensus       102 ~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~  179 (279)
                      . +.+..++ ..+..+++|+.+++.++.+....+                        ...+..+..+..+...++.+..
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~------------------------~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------------------------VHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC------------------------CTTTCBSSCEEEEEESCTTCCE
T ss_pred             ccccccccccccccccccccccccchhhhccccc------------------------cccccccccccccccccccccc
Confidence            4 4565444 456788999999999887652211                        1123344555555556555655


Q ss_pred             eccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEE-EccCCcccccCChhhhcccCCcEEEc
Q 044855          180 NIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL-LLRGNSLQGHIPNELCQLAKLRIMDL  258 (279)
Q Consensus       180 ~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l  258 (279)
                      ..+..+..++             ..++.+++++|++.......+ ..+++..+ .+.+|.+++..+..+.++++|+.|++
T Consensus       143 i~~~~~~~~~-------------~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         143 IERNSFVGLS-------------FESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             ECTTSSTTSB-------------SSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEEC
T ss_pred             cccccccccc-------------ccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEEC
Confidence            4444444433             133455555565544334344 34555555 56788898655667899999999999


Q ss_pred             cCCEeeeecCccccCCcccc
Q 044855          259 SNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       259 ~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ++|+++..-+..|.+++.|+
T Consensus       209 s~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         209 SRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             TTSCCCCCCSSSCTTCCEEE
T ss_pred             CCCcCCccCHHHHcCCcccc
Confidence            99999943345788888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.2e-16  Score=122.32  Aligned_cols=196  Identities=22%  Similarity=0.244  Sum_probs=129.1

Q ss_pred             cEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeC
Q 044855           46 EYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSH  125 (279)
Q Consensus        46 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  125 (279)
                      ..++++.+.+.+..   ..+.+.+|+.|++.++.. ..+  ..+..+++|+++++++|.+..+.. +..+++++.+++++
T Consensus        22 ~~~~l~~~~~~d~~---~~~~l~~L~~L~l~~~~i-~~l--~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV---TQADLDGITTLSAFGTGV-TTI--EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHTTCSSTTSEE---CHHHHHTCCEEECTTSCC-CCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS
T ss_pred             HHHHhCCCCcCCcC---CHHHcCCcCEEECCCCCC-Ccc--hhHhcCCCCcEeecCCceeecccc-cccccccccccccc
Confidence            34566666655332   445567788888877753 333  346778888888888888766543 67778888888887


Q ss_pred             CcccccCCCCCcCcchhhccCcccceeccCCC---CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855          126 NKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS  202 (279)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  202 (279)
                      +.+...        ..+.+++.|+.++++++.   ...+...+.+..+.++.+.+....  .+...++|+          
T Consensus        95 n~~~~i--------~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~----------  154 (227)
T d1h6ua2          95 NPLKNV--------SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQ----------  154 (227)
T ss_dssp             CCCSCC--------GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCC----------
T ss_pred             cccccc--------ccccccccccccccccccccccchhccccchhhhhchhhhhchhh--hhccccccc----------
Confidence            765421        235556666666666552   222344556666666666554321  234444444          


Q ss_pred             ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          203 SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                          .|++++|.+.+.  ..+.++++|+.|++++|++++ + ..+..+++|+.|++++|+++ .+|. +.+++.|+
T Consensus       155 ----~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l-~~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~  220 (227)
T d1h6ua2         155 ----YLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-I-SPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLF  220 (227)
T ss_dssp             ----EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCC
T ss_pred             ----cccccccccccc--hhhcccccceecccCCCccCC-C-hhhcCCCCCCEEECcCCcCC-CCcc-cccCCCCC
Confidence                555555555432  247789999999999999985 3 34789999999999999999 5663 77777775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8.9e-17  Score=121.53  Aligned_cols=166  Identities=19%  Similarity=0.288  Sum_probs=103.9

Q ss_pred             CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccE
Q 044855           41 NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF  120 (279)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  120 (279)
                      .+.+|++|++++|.+...   ..+..+++|++|++++|.. ..++  .+..+++|++|++++|.++.++ .+..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l---~~l~~l~~L~~L~L~~n~i-~~l~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKL-TDIK--PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCC-CCCG--GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCCc---hhHhhCCCCCEEeCCCccc-cCcc--ccccCccccccccccccccccc-cccccccccc
Confidence            456777777777766521   2355666666666666643 2222  2456677777777777776665 3566777777


Q ss_pred             EEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc
Q 044855          121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS  200 (279)
Q Consensus       121 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~  200 (279)
                      |+++++.+.                           ....+..++.++.+++++|.++.  +..+..+++|+.+++++  
T Consensus       117 L~l~~~~~~---------------------------~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~--  165 (210)
T d1h6ta2         117 LSLEHNGIS---------------------------DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED--  165 (210)
T ss_dssp             EECTTSCCC---------------------------CCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCS--
T ss_pred             ccccccccc---------------------------ccccccccccccccccccccccc--ccccccccccccccccc--
Confidence            777776543                           11235556677777777776654  22344555555544444  


Q ss_pred             CcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccC
Q 044855          201 LSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSN  260 (279)
Q Consensus       201 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  260 (279)
                                  |++.+ ++ .+.++++|+.|++++|++++ ++ .+.++++|+.|++++
T Consensus       166 ------------n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         166 ------------NQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------------SCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ------------ccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence                        44433 22 36678888888888888874 33 577888888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.9e-16  Score=116.96  Aligned_cols=176  Identities=20%  Similarity=0.231  Sum_probs=104.1

Q ss_pred             EEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCC
Q 044855           47 YLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHN  126 (279)
Q Consensus        47 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  126 (279)
                      ...++.+.+.+...   ...++++++|+++++... .+  ..+..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus        22 ~~~l~~~~~~~~~~---~~~l~~l~~L~l~~~~i~-~l--~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIK-SI--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEEC---HHHHTTCCEEECTTSCCC-CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCccC---HHHhcCCCEEECCCCCCC-Cc--cccccCCCcCcCccccccccCccc-ccCCccccccccccc
Confidence            33455554443222   233456666666665432 11  234556666666666666655543 556666666666665


Q ss_pred             cccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccce
Q 044855          127 KLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLI  206 (279)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~  206 (279)
                      .+.                           ....++.++.|+.++++++.....  ..+..+++|+.+++++|       
T Consensus        95 ~~~---------------------------~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n-------  138 (199)
T d2omxa2          95 QIA---------------------------DITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSN-------  138 (199)
T ss_dssp             CCC---------------------------CCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSS-------
T ss_pred             ccc---------------------------cccccccccccccccccccccccc--cccchhhhhHHhhhhhh-------
Confidence            543                           112355667777777777766542  23555666655554444       


Q ss_pred             EEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          207 TLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                             ++.. + ..+..+++++.|++.+|++++.  ..+.++++|+.|++++|+++ .+| .++.++.||
T Consensus       139 -------~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~  197 (199)
T d2omxa2         139 -------TISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS-DIS-VLAKLTNLE  197 (199)
T ss_dssp             -------CCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCS
T ss_pred             -------hhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC-CCc-cccCCCCCC
Confidence                   3322 2 2466778888888888888743  24677888888888888887 455 467777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-17  Score=132.58  Aligned_cols=213  Identities=19%  Similarity=0.193  Sum_probs=125.1

Q ss_pred             CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCC-cCc--ccChhhhcCCC
Q 044855           41 NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDC-QLH--VIPSFLLQQDH  117 (279)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~  117 (279)
                      ...+|++|++++|.+........+..+++|++|+++++... ......+..+++|++|++++| .++  .+......+++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCC-cHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            45577777777776653333345666777777777766432 222233455677777777775 333  22233445677


Q ss_pred             ccEEEeeCCcccccCCCCCcCcchhhc-cCcccceeccCCC--------CccccCCCCCcEEEccccE-eeeeccccccC
Q 044855          118 LKFLDLSHNKLVGNFPICGKMDDGLRS-STSLEGLDISGNI--------PNWIGNISTLRVLLMSKNY-LEANIPVQLNH  187 (279)
Q Consensus       118 L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~--------~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~  187 (279)
                      |++|+++++......    .....+.. .+.|+.++++++.        ...+..+++|+.|++++|. +++.....+..
T Consensus       123 L~~L~ls~c~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         123 LDELNLSWCFDFTEK----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             CCEEECCCCTTCCHH----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             ccccccccccccccc----cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            777777765321000    01111222 3567777776541        1223457888888888864 56555666777


Q ss_pred             CCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhh-hcccCCcEEEccCCEeeee
Q 044855          188 LKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNEL-CQLAKLRIMDLSNNIFSGS  266 (279)
Q Consensus       188 ~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~  266 (279)
                      +++|++|++++|.             .+++.....+.++++|+.|+++++ +++.....+ ..+|+|+   +..+++++.
T Consensus       199 ~~~L~~L~L~~C~-------------~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~  261 (284)
T d2astb2         199 LNYLQHLSLSRCY-------------DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTI  261 (284)
T ss_dssp             CTTCCEEECTTCT-------------TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred             cCcCCEEECCCCC-------------CCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCC
Confidence            7777766665542             233444556778899999999988 543333333 4566665   567778866


Q ss_pred             cCccccCCc
Q 044855          267 IPSCLGNVS  275 (279)
Q Consensus       267 ~p~~~~~~~  275 (279)
                      .++.++..+
T Consensus       262 ~~~~~~~~~  270 (284)
T d2astb2         262 ARPTIGNKK  270 (284)
T ss_dssp             TCSSCSSTT
T ss_pred             CCCccCccc
Confidence            666666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=114.51  Aligned_cols=158  Identities=21%  Similarity=0.267  Sum_probs=110.5

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM   81 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   81 (279)
                      ++.+.+++.+.  .+.++++++|+++++.++. + ..+..+++|++|++++|.+++.   ..+..+++|++|++++|...
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~---~~l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc---ccccCCcccccccccccccc
Confidence            34555554433  3568999999999999884 3 3588899999999999998743   24888999999999988642


Q ss_pred             ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855           82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI  161 (279)
Q Consensus        82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  161 (279)
                       .++  .+..+++|+.++++++....++ .+..+++|+.|++++|.+..                           ...+
T Consensus        98 -~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~---------------------------~~~l  146 (199)
T d2omxa2          98 -DIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD---------------------------ISAL  146 (199)
T ss_dssp             -CCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC---------------------------CGGG
T ss_pred             -ccc--cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhcc---------------------------cccc
Confidence             222  3678999999999999876554 46778999999999987641                           1234


Q ss_pred             cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCC
Q 044855          162 GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFEN  199 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~  199 (279)
                      ..+++++.|++.+|.++.. + .++++++|+.|++++|
T Consensus       147 ~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSN  182 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccCC-c-cccCCCCCCEEECCCC
Confidence            4555666666666665542 2 2455555554444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2e-15  Score=113.95  Aligned_cols=159  Identities=23%  Similarity=0.278  Sum_probs=103.9

Q ss_pred             cccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccC
Q 044855           67 HSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSST  146 (279)
Q Consensus        67 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  146 (279)
                      +..|++|+++++... .+  ..+..+++|++|++++|.++.++. +..+++|+.|++++|.+.+                
T Consensus        45 L~~L~~L~l~~~~i~-~l--~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~----------------  104 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-SV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD----------------  104 (210)
T ss_dssp             HHTCCEEECTTSCCC-CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC----------------
T ss_pred             hcCccEEECcCCCCC-Cc--hhHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccc----------------
Confidence            445666666655422 11  124556666666666666655542 3456666666666665431                


Q ss_pred             cccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcC
Q 044855          147 SLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINEL  226 (279)
Q Consensus       147 ~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  226 (279)
                                + ..+..+++|+.|++++|.+.. . ..+..++.++.++++.|              .+.+  +..+..+
T Consensus       105 ----------l-~~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n--------------~l~~--~~~~~~l  155 (210)
T d1h6ta2         105 ----------L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNN--------------KITD--ITVLSRL  155 (210)
T ss_dssp             ----------G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSS--------------CCCC--CGGGGGC
T ss_pred             ----------c-ccccccccccccccccccccc-c-ccccccccccccccccc--------------cccc--ccccccc
Confidence                      1 235567788888888887654 2 24556666665555544              4432  2345678


Q ss_pred             cCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855          227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR  278 (279)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~  278 (279)
                      ++|+.+++++|++++. + .+..+++|+.|++++|.++ .+| .+.+++.|+
T Consensus       156 ~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~  203 (210)
T d1h6ta2         156 TKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLD  203 (210)
T ss_dssp             TTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred             cccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCC
Confidence            9999999999999853 2 3788999999999999998 676 588888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.61  E-value=1.3e-13  Score=111.89  Aligned_cols=235  Identities=21%  Similarity=0.208  Sum_probs=142.7

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||+++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++.+|.+.. +.  .  -.+.|++|++++|..
T Consensus        44 dLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~--~--lp~~L~~L~L~~n~l  110 (353)
T d1jl5a_          44 ELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LS--D--LPPLLEYLGVSNNQL  110 (353)
T ss_dssp             ECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC--S--CCTTCCEEECCSSCC
T ss_pred             EeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hh--h--hcccccccccccccc
Confidence            57888887 45643   578999999999888 66654   4578888888887762 21  1  114688888887763


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-------------------hhhcCCCccEEEeeCCcccccCCCC------
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-------------------FLLQQDHLKFLDLSHNKLVGNFPIC------  135 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~------  135 (279)
                       ..++.  +..+++|++++++++.+...+.                   .+..++.++.+.++++.........      
T Consensus       111 -~~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l  187 (353)
T d1jl5a_         111 -EKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI  187 (353)
T ss_dssp             -SSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             -ccccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccc
Confidence             34432  4677888888888776543321                   2233456677777766543221110      


Q ss_pred             ------CcCcchhhccCcccceeccCCCCccc-c--------------------CCCCCcEEEccccEeee---------
Q 044855          136 ------GKMDDGLRSSTSLEGLDISGNIPNWI-G--------------------NISTLRVLLMSKNYLEA---------  179 (279)
Q Consensus       136 ------~~~~~~~~~~~~L~~l~l~~~~~~~~-~--------------------~~~~L~~L~l~~~~l~~---------  179 (279)
                            .........++.++.++++++....+ .                    ....+...++..+.+..         
T Consensus       188 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  267 (353)
T d1jl5a_         188 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY  267 (353)
T ss_dssp             ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhc
Confidence                  01112244456677777765421111 1                    11223333333322111         


Q ss_pred             -------eccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChh
Q 044855          180 -------NIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE  246 (279)
Q Consensus       180 -------~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  246 (279)
                             ........+++|++|++++|.+..      +|+.|++++|+++. +|.   .+++|++|++++|+++ .+|..
T Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             EEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC
T ss_pred             ccccccCccccccccCCCCCEEECCCCccCccccccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCcc
Confidence                   011112335789999999998754      89999999999864 553   3568999999999998 55543


Q ss_pred             hhcccCCcEEEcc
Q 044855          247 LCQLAKLRIMDLS  259 (279)
Q Consensus       247 ~~~~~~L~~L~l~  259 (279)
                         .++|+.|.+.
T Consensus       343 ---~~~L~~L~~~  352 (353)
T d1jl5a_         343 ---PESVEDLRMN  352 (353)
T ss_dssp             ---CTTCCEEECC
T ss_pred             ---ccccCeeECc
Confidence               2357777664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-16  Score=126.25  Aligned_cols=218  Identities=17%  Similarity=0.155  Sum_probs=123.2

Q ss_pred             cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855           22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS  101 (279)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  101 (279)
                      +++|++++.+.......+.. .....+.++...+..  +........+|++|+++++..........+..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~--~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQ--PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECS--CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeecccccccc--chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35677766543211111111 123444554443321  112233445777777777654433333445667777788777


Q ss_pred             CCcCc-ccChhhhcCCCccEEEeeCCc-ccccCCCCCcCcchhhccCcccceeccCCC--C-----ccc-cCCCCCcEEE
Q 044855          102 DCQLH-VIPSFLLQQDHLKFLDLSHNK-LVGNFPICGKMDDGLRSSTSLEGLDISGNI--P-----NWI-GNISTLRVLL  171 (279)
Q Consensus       102 ~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~-----~~~-~~~~~L~~L~  171 (279)
                      +|.+. .....+..+++|++|+++++. +++.     .+......+++|++|+++++.  .     ..+ ...+.|+.|+
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-----~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~  154 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  154 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             ccCCCcHHHHHHhcCCCCcCcccccccccccc-----ccchhhHHHHhccccccccccccccccchhhhcccccccchhh
Confidence            77663 334455667777777777753 2210     111223456667777776541  1     111 1235666666


Q ss_pred             ccccE--eeee-ccccccCCCCccEEeccCCcCcccceEEEeecC-ccCCCCchhhhcCcCCcEEEccCC-cccccCChh
Q 044855          172 MSKNY--LEAN-IPVQLNHLKSLELIDIFENSLSSKLITLDLRDN-KFFGRIPYQINELSNLHVLLLRGN-SLQGHIPNE  246 (279)
Q Consensus       172 l~~~~--l~~~-~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~  246 (279)
                      ++++.  ++.. ......++++|+              +|++++| .+++.....+..+++|++|++++| .+++.....
T Consensus       155 l~~~~~~i~~~~l~~l~~~~~~L~--------------~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~  220 (284)
T d2astb2         155 LSGYRKNLQKSDLSTLVRRCPNLV--------------HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE  220 (284)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCS--------------EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             hccccccccccccccccccccccc--------------ccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH
Confidence            66542  2221 112223455555              5555544 244556667788999999999996 588777888


Q ss_pred             hhcccCCcEEEccCC
Q 044855          247 LCQLAKLRIMDLSNN  261 (279)
Q Consensus       247 ~~~~~~L~~L~l~~n  261 (279)
                      +..+|+|+.|++++|
T Consensus       221 L~~~~~L~~L~l~~~  235 (284)
T d2astb2         221 LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeeeCC
Confidence            899999999999998

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-17  Score=139.80  Aligned_cols=105  Identities=21%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             CCCCCcCcCCC-CccccCCCCccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCcccch---hhh-cccccce
Q 044855            1 DLSSNNFEGHL-PQCLNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQGTFSI---NSL-ANHSKLE   71 (279)
Q Consensus         1 ~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~-~~~~~L~   71 (279)
                      |++++++++.. ..-+..++++++|+|++|.++.    .++..+..+++|++|++++|.+++....   ..+ ....+|+
T Consensus         8 d~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~   87 (460)
T d1z7xw1           8 DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ   87 (460)
T ss_dssp             EEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCC
T ss_pred             EeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCC
Confidence            45566666433 2334567888888888887763    3344567788888888888877521111   111 1234688


Q ss_pred             eeeecCCccccc---ccCCCCCCCCceeEEEecCCcC
Q 044855           72 VLLLSSGSNMLQ---VKTESWHPTSQLKVLKLSDCQL  105 (279)
Q Consensus        72 ~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~  105 (279)
                      .|++++|.....   .....+..+++|++|++++|.+
T Consensus        88 ~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          88 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             EEECCCCCccccccccccchhhccccccccccccccc
Confidence            888887764222   1223456678888888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=3.3e-15  Score=111.14  Aligned_cols=123  Identities=19%  Similarity=0.268  Sum_probs=96.0

Q ss_pred             CCCCcCcCCCCccccCCCCccEEEeeCCcccc-cCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSG-NFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      .+++.++ .+|..+.  +++++|+|++|.+++ ..+..|.++++|++|++++|.+. ......+..+++|++|++++|. 
T Consensus        15 Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~N~-   89 (192)
T d1w8aa_          15 CTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK-   89 (192)
T ss_dssp             CTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCC-
T ss_pred             EeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeecccc-
Confidence            5677777 4555443  678899999998875 33556788899999999998887 4555778888889999998885 


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCccc
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  129 (279)
                      +..++..+|.++++|++|++++|.++.++. .+..+++|+++++++|.+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            556777788888999999999998888765 4567888899999888765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=1.7e-16  Score=129.15  Aligned_cols=238  Identities=18%  Similarity=0.160  Sum_probs=129.4

Q ss_pred             CCccccCCCCccEEEeeCCccccc----CCccccCCCcCcEEeccCcccCcccc---------hhhhcccccceeeeecC
Q 044855           11 LPQCLNHLTHLKVLDIFNNQLSGN----FPSTLTNFTSLEYLDLSSINFQGTFS---------INSLANHSKLEVLLLSS   77 (279)
Q Consensus        11 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~~~L~~L~l~~   77 (279)
                      +..++.+...+++|+|++|.+...    +...+...++|+.++++++.......         ...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            345667788888899888877532    33446677888888888765431110         12344567777777776


Q ss_pred             Ccccccc---cCCCCCCCCceeEEEecCCcCcc-----cChh---------hhcCCCccEEEeeCCcccccCCCCCcCcc
Q 044855           78 GSNMLQV---KTESWHPTSQLKVLKLSDCQLHV-----IPSF---------LLQQDHLKFLDLSHNKLVGNFPICGKMDD  140 (279)
Q Consensus        78 ~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-----~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  140 (279)
                      |......   ....+...++|++|++++|.+..     +...         ....+.++.+.++++.+.....  ..+..
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~--~~l~~  180 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--KEWAK  180 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--HHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc--ccccc
Confidence            6432211   11223445677777777776521     1111         1234566777777665432111  11222


Q ss_pred             hhhccCcccceeccCCCC----------ccccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcccce
Q 044855          141 GLRSSTSLEGLDISGNIP----------NWIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSSKLI  206 (279)
Q Consensus       141 ~~~~~~~L~~l~l~~~~~----------~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~~L~  206 (279)
                      .+.....++.++++++-.          ..+..+++|+.|++++|.++..    +...+..+++              |+
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~--------------L~  246 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN--------------LR  246 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT--------------CC
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccccc--------------ch
Confidence            334445555555554411          1223344555555555544321    1222334444              55


Q ss_pred             EEEeecCccCCCCc----hhhh--cCcCCcEEEccCCcccccCCh----hhh-cccCCcEEEccCCEee
Q 044855          207 TLDLRDNKFFGRIP----YQIN--ELSNLHVLLLRGNSLQGHIPN----ELC-QLAKLRIMDLSNNIFS  264 (279)
Q Consensus       207 ~L~l~~~~~~~~~~----~~~~--~~~~L~~L~l~~n~~~~~~~~----~~~-~~~~L~~L~l~~n~l~  264 (279)
                      .|++++|.+.+...    ..+.  ..+.|++|++++|.+++....    .+. +.+.|+.|++++|.+.
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            55555665544322    2232  246788999999988754333    332 4678999999999886

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=5.6e-15  Score=109.87  Aligned_cols=109  Identities=24%  Similarity=0.321  Sum_probs=57.2

Q ss_pred             CceeEEEecCCcCcc-cC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEE
Q 044855           93 SQLKVLKLSDCQLHV-IP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVL  170 (279)
Q Consensus        93 ~~L~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L  170 (279)
                      +++++|++++|.+.. ++ ..+..+++|+.|++++|.+...                         .+..+..+++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-------------------------~~~~~~~~~~L~~L   83 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-------------------------EPNAFEGASHIQEL   83 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-------------------------CTTTTTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-------------------------ccccccccccccee
Confidence            355556666665532 22 2334555566666655554421                         12344555666666


Q ss_pred             EccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855          171 LMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ  240 (279)
Q Consensus       171 ~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (279)
                      ++++|.++...+..|.++++|+.|++++|.+.              ...+.+|..+++|+++++++|.+.
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~--------------~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQIS--------------CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCC--------------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeccccccccCHHHHhCCCcccccccCCcccc--------------ccCHHHhcCCcccccccccccccc
Confidence            66666666655555666655554444444332              333444555566666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=104.29  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             cccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855           14 CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS   93 (279)
Q Consensus        14 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   93 (279)
                      .+.++.++++|+|++|+++ .++..+..+++|++|++++|.+. .+  ..+..+++|++|++++|. +..++...+..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l--~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL--DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE--CCCCCCSSCCEEECCSSC-CCEECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc--CCcccCcchhhhhccccc-ccCCCcccccccc
Confidence            4667888999999999998 55666778899999999999887 33  357778888888888886 4455555556788


Q ss_pred             ceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCccc
Q 044855           94 QLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        94 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~  129 (279)
                      +|++|++++|.+..++.  .+..+++|+.|++++|.+.
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccc
Confidence            88888888888877653  5667888888888888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-16  Score=134.74  Aligned_cols=78  Identities=19%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             CCCCcCcC----CCCccccCCCCccEEEeeCCccccc----CCcccc-CCCcCcEEeccCcccCcccc---hhhhccccc
Q 044855            2 LSSNNFEG----HLPQCLNHLTHLKVLDIFNNQLSGN----FPSTLT-NFTSLEYLDLSSINFQGTFS---INSLANHSK   69 (279)
Q Consensus         2 l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~   69 (279)
                      |++|.++.    .++.++..+++|++|+|++|.++..    +...+. ...+|++|++++|.+++...   ...+..++.
T Consensus        34 L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~  113 (460)
T d1z7xw1          34 LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT  113 (460)
T ss_dssp             EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTT
T ss_pred             eCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccc
Confidence            44565552    2345567888888888888887632    222222 23578888888888763321   234567788


Q ss_pred             ceeeeecCCc
Q 044855           70 LEVLLLSSGS   79 (279)
Q Consensus        70 L~~L~l~~~~   79 (279)
                      |++|++++|.
T Consensus       114 L~~L~L~~N~  123 (460)
T d1z7xw1         114 LQELHLSDNL  123 (460)
T ss_dssp             CCEEECCSSB
T ss_pred             cccccccccc
Confidence            8888887765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.7e-14  Score=102.81  Aligned_cols=120  Identities=13%  Similarity=0.123  Sum_probs=98.1

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|+|+.. +..+..+++|+.|++++|.++ .++ .|..+++|++|++++|.+. .++...+..+++|++|++++|..
T Consensus        24 ~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i   99 (162)
T d1a9na_          24 DLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSL   99 (162)
T ss_dssp             ECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCC
T ss_pred             ECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccccccceeccccc
Confidence            6899999954 667788999999999999998 443 5889999999999999997 45555677899999999999975


Q ss_pred             cccccCCCCCCCCceeEEEecCCcCcccCh----hhhcCCCccEEEee
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS----FLLQQDHLKFLDLS  124 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~  124 (279)
                      ........+..+++|+++++++|.+...+.    .+..+|+|+.|+-.
T Consensus       100 ~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         100 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            432233557889999999999999977764    46778999988744

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=8.8e-14  Score=95.42  Aligned_cols=99  Identities=24%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855            1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN   80 (279)
Q Consensus         1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   80 (279)
                      ||++|+++. ++ .+.++++|++|++++|+++ .+|..|..+++|++|++++|.+.. .  ..+..+++|+++++++|..
T Consensus         4 ~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l--~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           4 HLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V--DGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             ECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C--GGGTTCSSCCEEECCSSCC
T ss_pred             EcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-c--CccccccccCeEECCCCcc
Confidence            567777773 33 3777788888888888777 566667777888888888777752 2  2344555555555554432


Q ss_pred             cccccCCCCCCCCceeEEEecCCcC
Q 044855           81 MLQVKTESWHPTSQLKVLKLSDCQL  105 (279)
Q Consensus        81 ~~~~~~~~~~~~~~L~~L~l~~~~~  105 (279)
                      ........+..+++|+++++++|.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcC
Confidence            2111112234444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=6.6e-13  Score=90.95  Aligned_cols=118  Identities=29%  Similarity=0.323  Sum_probs=62.7

Q ss_pred             eEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEcccc
Q 044855           96 KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKN  175 (279)
Q Consensus        96 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~  175 (279)
                      |+|++++|.++.++. +..+++|++|++++|.+.                          .+|..++.+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~--------------------------~lp~~~~~l~~L~~L~l~~N   53 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR--------------------------ALPPALAALRCLEVLQASDN   53 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC--------------------------CCCGGGGGCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccC--------------------------cchhhhhhhhcccccccccc
Confidence            355666666665543 455666666666666554                          12334555566666666666


Q ss_pred             EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCC-CchhhhcCcCCcEEEccCCccccc---CChhhhccc
Q 044855          176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRGNSLQGH---IPNELCQLA  251 (279)
Q Consensus       176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~  251 (279)
                      .++. .+ .++.+++|+.+++++|.+.              +. ....+..+++|+.+++++|++++.   .......+|
T Consensus        54 ~i~~-l~-~~~~l~~L~~L~l~~N~i~--------------~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp  117 (124)
T d1dcea3          54 ALEN-VD-GVANLPRLQELLLCNNRLQ--------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  117 (124)
T ss_dssp             CCCC-CG-GGTTCSSCCEEECCSSCCC--------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             cccc-cC-ccccccccCeEECCCCccC--------------CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCc
Confidence            6654 22 2555555554444444332              21 123455667777777777776532   122333456


Q ss_pred             CCcEE
Q 044855          252 KLRIM  256 (279)
Q Consensus       252 ~L~~L  256 (279)
                      +++.|
T Consensus       118 ~L~~L  122 (124)
T d1dcea3         118 SVSSI  122 (124)
T ss_dssp             TCSEE
T ss_pred             CcceE
Confidence            66554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=8e-15  Score=119.08  Aligned_cols=226  Identities=20%  Similarity=0.187  Sum_probs=149.7

Q ss_pred             CCCCCcCcCC----CCccccCCCCccEEEeeCCcccc----------cCCccccCCCcCcEEeccCcccCcccc---hhh
Q 044855            1 DLSSNNFEGH----LPQCLNHLTHLKVLDIFNNQLSG----------NFPSTLTNFTSLEYLDLSSINFQGTFS---INS   63 (279)
Q Consensus         1 ~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~   63 (279)
                      +|++|.+...    +..++...++|+.++++++....          .+...+..+++|++|++++|.+.....   ...
T Consensus        37 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  116 (344)
T d2ca6a1          37 VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF  116 (344)
T ss_dssp             ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH
T ss_pred             ECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhh
Confidence            3667766533    33456788999999999875431          123345678999999999998864322   134


Q ss_pred             hcccccceeeeecCCccccccc------------CCCCCCCCceeEEEecCCcCc-----ccChhhhcCCCccEEEeeCC
Q 044855           64 LANHSKLEVLLLSSGSNMLQVK------------TESWHPTSQLKVLKLSDCQLH-----VIPSFLLQQDHLKFLDLSHN  126 (279)
Q Consensus        64 ~~~~~~L~~L~l~~~~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~  126 (279)
                      +..++.|++|++++|.......            .......+.|+.+.++++.++     .+...+..+++++.|++++|
T Consensus       117 l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n  196 (344)
T d2ca6a1         117 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN  196 (344)
T ss_dssp             HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccc
Confidence            5677899999999886421100            001135678999999998773     34445667899999999999


Q ss_pred             cccccCCCCCcCcchhhccCcccceeccCCC---------CccccCCCCCcEEEccccEeeeeccccc----cC--CCCc
Q 044855          127 KLVGNFPICGKMDDGLRSSTSLEGLDISGNI---------PNWIGNISTLRVLLMSKNYLEANIPVQL----NH--LKSL  191 (279)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---------~~~~~~~~~L~~L~l~~~~l~~~~~~~l----~~--~~~L  191 (279)
                      .+..... ...+...+..++.|+.|+++++.         ...+..+++|++|++++|.++......+    ..  .+.|
T Consensus       197 ~i~~~g~-~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L  275 (344)
T d2ca6a1         197 GIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL  275 (344)
T ss_dssp             CCCHHHH-HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred             ccccccc-ccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCC
Confidence            8753210 01133456778899999999873         2345678999999999999876433322    22  2334


Q ss_pred             cEEeccCCcCcccceEEEeecCccCCC----Cchhhh-cCcCCcEEEccCCcccc
Q 044855          192 ELIDIFENSLSSKLITLDLRDNKFFGR----IPYQIN-ELSNLHVLLLRGNSLQG  241 (279)
Q Consensus       192 ~~l~l~~~~~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~n~~~~  241 (279)
                      +              +|++++|.+...    +...+. +++.|+.|++++|.+.+
T Consensus       276 ~--------------~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         276 Q--------------TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             C--------------EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             C--------------EEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            4              555555555432    223332 57889999999999873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=8.5e-14  Score=103.65  Aligned_cols=134  Identities=25%  Similarity=0.267  Sum_probs=71.3

Q ss_pred             CcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEeeee
Q 044855          105 LHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEAN  180 (279)
Q Consensus       105 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~  180 (279)
                      ++.++..+..+++|++|++++|.+..       + ..+..+++|+.|++++|    ++.....++.|+.|++++|.++..
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~-------i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l  108 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEK-------I-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESC-------C-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH
T ss_pred             hhhhhhHHhcccccceeECcccCCCC-------c-ccccCCccccChhhccccccccccccccccccccccccccccccc
Confidence            34455556666666666666665541       1 11333333333333332    111222234566666666665542


Q ss_pred             ccccccCCCCccEEeccCCcCcccceEEEeecCccCCCC-chhhhcCcCCcEEEccCCcccccCCh----------hhhc
Q 044855          181 IPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRI-PYQINELSNLHVLLLRGNSLQGHIPN----------ELCQ  249 (279)
Q Consensus       181 ~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~----------~~~~  249 (279)
                       + .+..++              +|+.|++++|++.+.. ...+..+++|+.|++++|++....+.          .+..
T Consensus       109 -~-~~~~l~--------------~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_         109 -S-GIEKLV--------------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             -H-HHHHHH--------------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             -c-cccccc--------------cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence             1 233444              4445555556554322 13567888999999999987644332          2566


Q ss_pred             ccCCcEEEccCCEee
Q 044855          250 LAKLRIMDLSNNIFS  264 (279)
Q Consensus       250 ~~~L~~L~l~~n~l~  264 (279)
                      +|+|+.||  +..++
T Consensus       173 lp~L~~LD--~~~I~  185 (198)
T d1m9la_         173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCCEES--SGGGT
T ss_pred             CCCcCEeC--CccCC
Confidence            88888875  44443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=2.1e-13  Score=101.44  Aligned_cols=105  Identities=23%  Similarity=0.306  Sum_probs=71.7

Q ss_pred             ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855          161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHV  231 (279)
Q Consensus       161 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~  231 (279)
                      ++.+++|+.|++++|.++. ++ .+..+++|+.|++++|.+..         +|+.|++++|+++..  ..+..+++|+.
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~  119 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSE
T ss_pred             HhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccccccccccccccccccccccccc--ccccccccccc
Confidence            4445555555555555554 22 34555555555555554433         577778888877542  35778999999


Q ss_pred             EEccCCcccccC-ChhhhcccCCcEEEccCCEeeeecCc
Q 044855          232 LLLRGNSLQGHI-PNELCQLAKLRIMDLSNNIFSGSIPS  269 (279)
Q Consensus       232 L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~  269 (279)
                      |++++|++++.. ...+..+++|+.|++++|++....+.
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            999999998543 25788999999999999998755543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.5e-11  Score=84.60  Aligned_cols=110  Identities=21%  Similarity=0.143  Sum_probs=89.2

Q ss_pred             CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855           17 HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL   95 (279)
Q Consensus        17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   95 (279)
                      .+...+.++.+++.+. ..|..+..+++|++|++.+++ ++ .++...+..+++|+.|++++|. +..++..+|..+++|
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRL   82 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccc-cCCcccccccccccc
Confidence            3445567888887777 567778888999999997765 55 6666788889999999998886 567777788999999


Q ss_pred             eEEEecCCcCcccChhhhcCCCccEEEeeCCccc
Q 044855           96 KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLV  129 (279)
Q Consensus        96 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  129 (279)
                      ++|++++|.++.++.......+++.|++++|.+.
T Consensus        83 ~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cceeccCCCCcccChhhhccccccccccCCCccc
Confidence            9999999999999887777778999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-10  Score=82.66  Aligned_cols=90  Identities=21%  Similarity=0.137  Sum_probs=42.3

Q ss_pred             ccccCCCCCcEEEcccc-EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855          159 NWIGNISTLRVLLMSKN-YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN  237 (279)
Q Consensus       159 ~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  237 (279)
                      ..+..+++|+.|++.++ .++...+..|.++++|+.|++++|.+.              ...+.+|..+++|+.|++++|
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~--------------~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--------------FVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--------------EECTTGGGSCSCCCEEECCSS
T ss_pred             ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC--------------CcccccccccccccceeccCC
Confidence            33444555566665544 255544445555555554444433322              233444555555555555555


Q ss_pred             cccccCChhhhcccCCcEEEccCCEe
Q 044855          238 SLQGHIPNELCQLAKLRIMDLSNNIF  263 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~L~~L~l~~n~l  263 (279)
                      +++...+..+ ....|+.|++++|++
T Consensus        91 ~l~~l~~~~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred             CCcccChhhh-ccccccccccCCCcc
Confidence            5552222222 233455555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3e-08  Score=70.59  Aligned_cols=86  Identities=23%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             cCCCCCcEEEccccEeeeec--cccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855          162 GNISTLRVLLMSKNYLEANI--PVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL  239 (279)
Q Consensus       162 ~~~~~L~~L~l~~~~l~~~~--~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (279)
                      ..++.|++|++++|.++...  +..+..+++|+.|++++|.+.              +.....+.....|+.+++++|++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~--------------~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK--------------SERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC--------------CGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc--------------cchhhhhhhccccceeecCCCCc
Confidence            45677888888888776632  233555666665555555443              22222333455688888888888


Q ss_pred             cccCCh-------hhhcccCCcEEEccCCEe
Q 044855          240 QGHIPN-------ELCQLAKLRIMDLSNNIF  263 (279)
Q Consensus       240 ~~~~~~-------~~~~~~~L~~L~l~~n~l  263 (279)
                      ......       .+..+|+|+.||  |..+
T Consensus       128 ~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         128 SDTFRDQSTYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             SSSSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred             CcCcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence            644332       245578888774  4444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=1.5e-06  Score=61.77  Aligned_cols=79  Identities=10%  Similarity=0.031  Sum_probs=48.6

Q ss_pred             ccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCCC----chhhhcCcCCcEEEccCCccccc----
Q 044855          185 LNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGRI----PYQINELSNLHVLLLRGNSLQGH----  242 (279)
Q Consensus       185 l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~----  242 (279)
                      +...+.|+.|++++|.+.+              .|+.|++++|.+.+..    ..++...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3444455555555554432              5666777777665432    33456678899999988764422    


Q ss_pred             ---CChhhhcccCCcEEEccCCEe
Q 044855          243 ---IPNELCQLAKLRIMDLSNNIF  263 (279)
Q Consensus       243 ---~~~~~~~~~~L~~L~l~~n~l  263 (279)
                         +...+...++|+.|+++.+..
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCccEeeCcCCCc
Confidence               344555678888888877653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4e-07  Score=64.54  Aligned_cols=86  Identities=19%  Similarity=0.057  Sum_probs=54.8

Q ss_pred             CccccCCCcCcEEeccCcccCcccc-hhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccC-----
Q 044855           36 PSTLTNFTSLEYLDLSSINFQGTFS-INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIP-----  109 (279)
Q Consensus        36 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----  109 (279)
                      +..+..+++|++|++++|.++.... ...+..+++|+.|++++|....-.... +....+|+.+++.+|.+....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~-~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHH-HHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhh-hhhccccceeecCCCCcCcCcccchh
Confidence            3344568888888888888874332 244667888888888887643222211 223456888888888774332     


Q ss_pred             ---hhhhcCCCccEEE
Q 044855          110 ---SFLLQQDHLKFLD  122 (279)
Q Consensus       110 ---~~~~~~~~L~~L~  122 (279)
                         ..+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               2345678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=4e-06  Score=59.53  Aligned_cols=111  Identities=18%  Similarity=0.156  Sum_probs=64.1

Q ss_pred             cCCCCccEEEeeCC-cccc----cCCccccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCcccccc---
Q 044855           16 NHLTHLKVLDIFNN-QLSG----NFPSTLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNMLQV---   84 (279)
Q Consensus        16 ~~l~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~---   84 (279)
                      .+.++|++|+|+++ .+..    .+...+...++|++|++++|.+.....   ...+...+.|++|++++|......   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999874 4542    233456677888888888887763211   123445567777777766543221   


Q ss_pred             cCCCCCCCCceeEEEecCCcCcc--------cChhhhcCCCccEEEeeCC
Q 044855           85 KTESWHPTSQLKVLKLSDCQLHV--------IPSFLLQQDHLKFLDLSHN  126 (279)
Q Consensus        85 ~~~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~L~~L~l~~~  126 (279)
                      ...++...++|++|+++++.+..        +...+...++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            12234555667777766654322        2334444566666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.60  E-value=4.5e-06  Score=59.16  Aligned_cols=115  Identities=14%  Similarity=0.113  Sum_probs=68.3

Q ss_pred             CccccCCCCccEEEeeC-Ccccc----cCCccccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCccccc
Q 044855           12 PQCLNHLTHLKVLDIFN-NQLSG----NFPSTLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNMLQ   83 (279)
Q Consensus        12 ~~~~~~l~~L~~L~l~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~   83 (279)
                      .....+.|.|++|++.+ +.++.    .+..++...++|++|++++|.+.....   ...+...+.++.++++++.....
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            33445778999999987 45542    234456678899999999998763222   12344556777777776654222


Q ss_pred             c---cCCCCCCCCceeEEEec--CCcCc-----ccChhhhcCCCccEEEeeCC
Q 044855           84 V---KTESWHPTSQLKVLKLS--DCQLH-----VIPSFLLQQDHLKFLDLSHN  126 (279)
Q Consensus        84 ~---~~~~~~~~~~L~~L~l~--~~~~~-----~~~~~~~~~~~L~~L~l~~~  126 (279)
                      .   ....+...++|+.+++.  ++.+.     .+...+...++|+.|++..+
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            1   12334555666665553  33442     34445556667777766554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=1.7e-05  Score=56.12  Aligned_cols=60  Identities=18%  Similarity=0.165  Sum_probs=39.2

Q ss_pred             cceEEEeecCccCCC----CchhhhcCcCCcEEEcc--CCccccc----CChhhhcccCCcEEEccCCEe
Q 044855          204 KLITLDLRDNKFFGR----IPYQINELSNLHVLLLR--GNSLQGH----IPNELCQLAKLRIMDLSNNIF  263 (279)
Q Consensus       204 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~--~n~~~~~----~~~~~~~~~~L~~L~l~~n~l  263 (279)
                      +++.+++.+|.+...    +...+...++|+.+++.  +|.+.+.    +...+...++|+.|+++.+..
T Consensus        75 ~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          75 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            555666666665433    23455677888876664  5667543    444566789999999987754