Citrus Sinensis ID: 044864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRLLPDLNLDLTMSIPSSSSSPSLANKANTEKKNDSELPN
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHcccccccccHHHHHHHHHHHHHcccccHcHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrkpccdkqdtnkgawskqeDQKLIDYIRKHgegcwrtipqaaglarcgKSCRLRWINylrpdlkrgnfaedEEDLIIKLHALLGNRWsliagrlpgrtanEVKNYWNSHLRRKLInmgidpknhrlhhslphnstgatslgqqlvdmnepavkprgddiyqasdagscwedepcrllpdlnldltmsipssssspslankantekkndselpn
Flexible Loop (DISEMBL)
mrkpccdkqdtnkgawskqedqKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLiagrlpgrtaNEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRLLPDLNLDLTMSIpssssspslankantekkndselpn
Low Complexity Region (SEG)
MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRLLPDLNLDLTMsipssssspsLANKANTEKKNDSELPN
Disordered region (IsUnstruct)
**********************KLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID********************************************AGSCWEDEPCRLLPDLNLD******************************
Disordered Region (DISOPRED)
*RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLIN*****************************************************************LDLT****************************
Disordered Region (DISEMBL)
******************QEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRLLPDLNLDLTMSI*************************
Disordered Region (DISPRO)
**KPCCD****NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHR***************************************************LPDLNLDLTMSIPS***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRLLPDLNLDLTMSIPSSSSSPSLANKANTEKKNDSELPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q9SZP1	282	Transcription repressor M	yes	no	0.883	0.670	0.556	5e-59
P81393	232	Myb-related protein 308 O	N/A	no	0.859	0.793	0.584	2e-58
Q38851	236	Transcription repressor M	no	no	0.892	0.809	0.552	4e-58
Q9S9K9	257	Transcription factor MYB3	no	no	0.588	0.490	0.761	2e-57
P81395	274	Myb-related protein 330 O	N/A	no	0.584	0.456	0.752	8e-57
P20025	255	Myb-related protein Zm38	N/A	no	0.584	0.490	0.744	1e-55
O49608	274	Transcription factor MYB3	no	no	0.841	0.656	0.567	2e-55
P20026	267	Myb-related protein Hv1 O	N/A	no	0.878	0.704	0.541	6e-55
Q8LPH6	352	Transcription factor MYB8	no	no	0.584	0.355	0.672	4e-48
Q38850	249	Transcription repressor M	no	no	0.574	0.493	0.642	7e-47

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  227 bits (578), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 143/205 (69%), Gaps = 16/205 (7%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K  TNKGAW+K+ED++L+ YI+ HGEGCWR++P+AAGL RCGKSCRLRWINYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF E+E++LIIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H+RRKLIN GID
Sbjct: 63  PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGID 122

Query: 122 PKNHR-------LHHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIY------QASDAGS 168
           P +HR          S P      TS    +   + P V+   + I       + S    
Sbjct: 123 PTSHRPIQESSASQDSKPTQLEPVTSNTINISFTSAPKVETFHESISFPGKSEKISMLTF 182

Query: 169 CWEDEPCRL---LPDLNLDLTMSIP 190
             E + C +    PDLNL+L +S+P
Sbjct: 183 KEEKDECPVQEKFPDLNLELRISLP 207

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.
Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 138/190 (72%), Gaps = 6/190 (3%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K  TNKGAW+K+ED +L+ YIR HGEGCWR++P+AAGL RCGKSCRLRWINYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF E+E++LIIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H+RRKL++ GID
Sbjct: 63  PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGID 122

Query: 122 PKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCR-LLPD 180
           P  HR  +    +    T++     +  E   K +      A D     E+ P +   PD
Sbjct: 123 PTTHRSINDGTASQDQVTTISFSNANSKEEDTKHK-----VAVDIMIKEENSPVQERCPD 177

Query: 181 LNLDLTMSIP 190
           LNLDL +S P
Sbjct: 178 LNLDLKISPP 187

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  224 bits (570), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/208 (55%), Positives = 149/208 (71%), Gaps = 17/208 (8%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K  TNKGAW+K+EDQ+L+DYIR HGEGCWR++P++AGL RCGKSCRLRWINYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF +DE+ +IIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H++RKL++ GID
Sbjct: 63  PDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGID 122

Query: 122 PKNHR-LHHSLPHNSTGATSLGQQLVD--MNEPAVKPRGDDIYQ--ASDAGSCWEDEPCR 176
           P+ HR ++ S   +S     +    V+   +  AVKP+ ++     AS +G+   DE  R
Sbjct: 123 PQTHRQINESKTVSSQVVVPIQNDAVEYSFSNLAVKPKTENSSDNGASTSGTT-TDEDLR 181

Query: 177 LLPD-----------LNLDLTMSIPSSS 193
              +           LNLDLT+   S S
Sbjct: 182 QNGECYYSDNSGHIKLNLDLTLGFGSWS 209

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  222 bits (565), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 116/126 (92%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K   NKGAW+K+EDQ L+DYIRKHGEGCWR++P+AAGL RCGKSCRLRW+NYLR
Sbjct: 3   RSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF E+E++LIIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H++RKL++ GID
Sbjct: 63  PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGID 122

Query: 122 PKNHRL 127
           P +HRL
Sbjct: 123 PNSHRL 128

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  219 bits (559), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 94/125 (75%), Positives = 115/125 (92%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K  TNKGAW+K+EDQ+LI+YIR HGEGCWR++P+AAGL RCGKSCRLRWINYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF E+E+++IIKLH+LLGN+WSLIAG LPGRT NE+KNYWN+H++RKL++ GID
Sbjct: 63  PDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGID 122

Query: 122 PKNHR 126
           P+ HR
Sbjct: 123 PQTHR 127

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  216 bits (550), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 111/125 (88%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K  TN+GAW+K+ED++L+ YIR HGEGCWR++P+AAGL RCGKSCRLRWINYLR
Sbjct: 3   RSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF  DE+DLI+KLH+LLGN+WSLIA RLPGRT NE+KNYWN+H+RRKL+  GID
Sbjct: 63  PDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGID 122

Query: 122 PKNHR 126
           P  HR
Sbjct: 123 PVTHR 127

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 138/201 (68%), Gaps = 21/201 (10%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K  TNKGAW+K+ED KLI YI+ HGEGCWR++P++AGL RCGKSCRLRWINYLR
Sbjct: 3   RSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF  +E+DLIIKLH+LLGN+WSLIA RLPGRT NE+KNYWN+H++RKL+  GID
Sbjct: 63  PDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGID 122

Query: 122 PKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVK-----PR-------GDDIYQASDAGSC 169
           P  HR     P N T  +          +P VK     P+       GD+  Q     S 
Sbjct: 123 PATHR-----PINETKTSQDSSDSSKTEDPLVKILSFGPQLEKIANFGDERIQKRVEYSV 177

Query: 170 WEDEPCRLLPDLNLDLTMSIP 190
            E+   R L DLNL+L +S P
Sbjct: 178 VEE---RCL-DLNLELRISPP 194

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  213 bits (543), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 138/205 (67%), Gaps = 17/205 (8%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R PCC+K  TNKGAW+K+ED +L  YI+ HGEGCWR++P+AAGL RCGKSCRLRWINYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRGNF+ +E++LIIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H+RRKL + GID
Sbjct: 63  PDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGID 122

Query: 122 PKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVKPRGD----------------DIYQASD 165
           P  HR  +S  H ++  T   +     ++ AV  R                  D +  S+
Sbjct: 123 PVTHRAINS-DHAASNITISFESAQRDDKGAVFRRDAEPAKAAAAAAAISHHVDHHHRSN 181

Query: 166 AGSCWEDEPCRLLPDLNLDLTMSIP 190
               W        PDLNLDL +S P
Sbjct: 182 PQLDWGQGKPLKCPDLNLDLCISPP 206

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  191 bits (484), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 100/125 (80%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R  CC KQ   KG WS +ED+KL++YI +HG GCW ++P+ AGL RCGKSCRLRWINYLR
Sbjct: 3   RHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRG F++DEE LII+LHA LGNRWS IA RLPGRT NE+KN+WNS L++KL   GID
Sbjct: 63  PDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGID 122

Query: 122 PKNHR 126
           P  H+
Sbjct: 123 PTTHK 127

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  186 bits (473), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 100/123 (81%)

Query: 4   PCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
           PCC K    +G W+ +ED+ L+ +I+K GEG WR++P+ AGL RCGKSCRLRW+NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 64  LKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPK 123
           +KRG    DEEDLI++LH LLGNRWSLIAGR+PGRT NE+KNYWN+HLR+KL+  GIDP+
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQ 135

Query: 124 NHR 126
            H+
Sbjct: 136 THK 138

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
224111530	226	predicted protein [Populus trichocarpa]	0.943	0.893	0.761	2e-82
225424191	225	PREDICTED: transcription repressor MYB4	0.962	0.915	0.730	3e-80
418209844	225	MybC2-L1 [Vitis vinifera]	0.962	0.915	0.725	1e-79
158323778	225	R2R3 MYB C2 repressor motif-like1 protei	0.981	0.933	0.720	9e-79
383290973	260	R2R3-MYB transcription factor MYB12 [Epi	0.981	0.807	0.674	3e-75
356519735	231	PREDICTED: myb-related protein 308-like	0.976	0.904	0.663	3e-73
338173759	224	transcription factor R2R3-MYB2 [Camellia	0.981	0.937	0.663	9e-72
225453132	228	PREDICTED: transcription repressor MYB4	0.953	0.894	0.663	7e-71
224099463	221	predicted protein [Populus trichocarpa]	0.869	0.841	0.737	1e-70
23476313	226	myb-like transcription factor 6 [Gossypi	0.873	0.827	0.695	2e-69

>gi|224111530|ref|XP_002315890.1| predicted protein [Populus trichocarpa] gi|222864930|gb|EEF02061.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/210 (76%), Positives = 172/210 (81%), Gaps = 8/210 (3%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKPCCDKQDTNKGAWSK+EDQKLIDYIRKHGEGCWR++PQAAGL RCGKSCRLRWINYL
Sbjct: 1   MRKPCCDKQDTNKGAWSKEEDQKLIDYIRKHGEGCWRSLPQAAGLLRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNF EDEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSHLRRKLINMGI
Sbjct: 61  RPDLKRGNFGEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGI 120

Query: 121 DPKNHRLHHSL-----PHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPC 175
           DP NHRL+ +L     P N   ATS G ++    +P  KP G D  Q SDAGSC ED+ C
Sbjct: 121 DPNNHRLNQNLLRSRNPPNPANATSSGLKIQAKQQP-TKP-GVDSEQTSDAGSCLEDDQC 178

Query: 176 RLLPDLNLDLTMSIPSSSSSPSLANKANTE 205
             LPDLNLDLTMSIPSSS +    N+ + E
Sbjct: 179 -ALPDLNLDLTMSIPSSSIAHVEGNQKDNE 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424191|ref|XP_002284155.1| PREDICTED: transcription repressor MYB4 [Vitis vinifera] gi|297737716|emb|CBI26917.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/215 (73%), Positives = 171/215 (79%), Gaps = 9/215 (4%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKPCCDKQDTNKGAWSKQEDQKLIDYIRK+GEGCWRT+PQAAGL RCGKSCRLRWINYL
Sbjct: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKNGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSHLRRKLINMGI
Sbjct: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGI 120

Query: 121 DPKNHRLHHSLPH---NSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRL 177
           DP NHRL H+ P      T AT+    L +   P VK  GD+  Q SDAGSC +D   R 
Sbjct: 121 DPNNHRLSHNFPRPRDPCTAATATSSGLNNHASPPVKSVGDN-DQTSDAGSCLDDNR-RA 178

Query: 178 LPDLNLDLTMSIPSSSSSPSLANKANTEKKNDSEL 212
           LPDLNLD+ ++IP     PSL      +K N+S++
Sbjct: 179 LPDLNLDVAITIP----QPSLDTTEEAKKHNESKV 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418209844|gb|AFX64995.1| MybC2-L1 [Vitis vinifera]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/215 (72%), Positives = 170/215 (79%), Gaps = 9/215 (4%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MR PCCDKQDTNKGAWSKQEDQKLIDYIRK+GEGCWRT+PQAAGL RCGKSCRLRWINYL
Sbjct: 1   MRMPCCDKQDTNKGAWSKQEDQKLIDYIRKNGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSHLRRKLINMGI
Sbjct: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGI 120

Query: 121 DPKNHRLHHSLPH---NSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRL 177
           DP NHRL H+ P      T AT+    L +   P VK  GD+  Q SDAGSC +D   R 
Sbjct: 121 DPNNHRLSHNFPRPRDPCTAATATSSGLNNHASPPVKSVGDN-DQTSDAGSCLDDNR-RA 178

Query: 178 LPDLNLDLTMSIPSSSSSPSLANKANTEKKNDSEL 212
           LPDLNLD+ ++IP     PSL      +K N+S++
Sbjct: 179 LPDLNLDVAITIP----QPSLDTTEEAKKHNESKV 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158323778|gb|ABW34393.1| R2R3 MYB C2 repressor motif-like1 protein [Vitis vinifera]

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 168/215 (78%), Gaps = 5/215 (2%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKPCCDKQDTNKGAWSKQEDQKLIDYIRK+GEGCWRT+PQAAGL RCGKSCRLRWINYL
Sbjct: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKNGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRG+FAEDEEDLIIKLHALLGNRWSLIAGR PGRT NEVKNYWNSHLRRKLINMGI
Sbjct: 61  RPDLKRGDFAEDEEDLIIKLHALLGNRWSLIAGRPPGRTDNEVKNYWNSHLRRKLINMGI 120

Query: 121 DPKNHRLHHSLPH---NSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCRL 177
           DP NHRL H+ P      T AT+    L +   P VK  GD+  Q SDAGSC +D   R 
Sbjct: 121 DPNNHRLSHNFPRPRDPCTAATATSSGLNNHASPPVKSVGDN-DQTSDAGSCLDDNR-RA 178

Query: 178 LPDLNLDLTMSIPSSSSSPSLANKANTEKKNDSEL 212
           LPDLNLD+ ++IP  S   +   K + E K   EL
Sbjct: 179 LPDLNLDVAITIPQPSVDTTEEAKKHNEPKVSREL 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383290973|gb|AFH03064.1| R2R3-MYB transcription factor MYB12 [Epimedium sagittatum]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 167/218 (76%), Gaps = 8/218 (3%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKPCCD+QD NKGAWSKQEDQKLIDYI+ +GEGCWR++PQAAGL RCGKSCRLRWINYL
Sbjct: 1   MRKPCCDQQDKNKGAWSKQEDQKLIDYIQLNGEGCWRSLPQAAGLLRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSHLRRKL+NMGI
Sbjct: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLMNMGI 120

Query: 121 DPKNHRLHHSLPHN------STGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEP 174
           DP NHRL H+LP        ST A S G +      P +K + ++  Q SDAGS   ++ 
Sbjct: 121 DPNNHRLTHNLPGRSQIQKVSTSAASSGSK-NQTRLPVMKIQANN-DQLSDAGSSSLEDD 178

Query: 175 CRLLPDLNLDLTMSIPSSSSSPSLANKANTEKKNDSEL 212
              LPDLNLDLT+++PS S +     + + E K   E 
Sbjct: 179 TSTLPDLNLDLTINLPSPSPTFIEEAQKHVEPKTTKEF 216

Source: Epimedium sagittatum

Species: Epimedium sagittatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519735|ref|XP_003528525.1| PREDICTED: myb-related protein 308-like [Glycine max]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 164/217 (75%), Gaps = 8/217 (3%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKP CD +D NKGAWSKQEDQKLIDYI+KHGE CWRT+PQAAGL RCGKSCRLRWINYL
Sbjct: 1   MRKPSCDIKDLNKGAWSKQEDQKLIDYIKKHGEVCWRTLPQAAGLHRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSH+RRKLI+ GI
Sbjct: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGI 120

Query: 121 DPKNHRLHHSLP---HNST----GATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDE 173
           DP NHRL H++P    NS      + +   +  + NE +  PR  +  + SDA S   + 
Sbjct: 121 DPNNHRLKHTIPSSLQNSLMSDDSSKAFSMKDTNKNETSKLPRVYNHVEVSDAASGEAES 180

Query: 174 PCRLLPDLNLDLTMSIPSSSSSPSLANKANTEKKNDS 210
           PC  LPDLNLDL+++ PS+S S S  N     + N S
Sbjct: 181 PC-ALPDLNLDLSITNPSASQSISGNNVKPFHESNSS 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338173759|gb|AEI83426.1| transcription factor R2R3-MYB2 [Camellia sinensis]

 Score =  275 bits (703), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 146/220 (66%), Positives = 166/220 (75%), Gaps = 10/220 (4%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKPCC+KQDTNKGAWSKQEDQKLI+YI+++G GCWRT+PQAAGL RCGKSCRLRW NYL
Sbjct: 1   MRKPCCEKQDTNKGAWSKQEDQKLIEYIQRNGTGCWRTLPQAAGLLRCGKSCRLRWNNYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSHLRRKLINMGI
Sbjct: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGI 120

Query: 121 DPKNHRLHHSLPH----NSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPCR 176
           DP  HRL  +L H     +TG+ +         +P +K +GD   Q SDA SC ED    
Sbjct: 121 DPTKHRLSQNLTHPQIIGATGSATSSASRDHACQP-LKTKGDH-DQVSDAASCLEDATWG 178

Query: 177 LLPDLNLDLTMSIPSSSS---SPSLANKANTEKKNDSELP 213
            LPDLNLDL ++ P S +     S  N++   +K +S  P
Sbjct: 179 -LPDLNLDLRLTAPQSIAIVEEESKQNESTMSRKVESTPP 217

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453132|ref|XP_002273328.1| PREDICTED: transcription repressor MYB4 [Vitis vinifera] gi|296087174|emb|CBI33548.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 140/211 (66%), Positives = 161/211 (76%), Gaps = 7/211 (3%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKPCCDK+DT KGAWSKQEDQ+LIDYI+ HGEGCWR++P+AAGL RCGKSCRLRWINYL
Sbjct: 1   MRKPCCDKKDTTKGAWSKQEDQRLIDYIKTHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNF +DEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSH+R+KLINMGI
Sbjct: 61  RPDLKRGNFGQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLINMGI 120

Query: 121 DPKNHRLHHSL--PHN---STGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPC 175
           DP NHR++ S   P N   S    S G      +  ++KP  D+    SD+ S  EDE  
Sbjct: 121 DPNNHRVNQSFAAPLNRCASAATMSSGSMTGACDNKSLKPSADN-DPLSDSASGLEDEIS 179

Query: 176 RLLPDLNLDLTMSIPSSSSSPSLANKANTEK 206
             L DLNLDLT++IP+SS +  +  K    K
Sbjct: 180 ASL-DLNLDLTIAIPASSLTDVIDKKRQDTK 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099463|ref|XP_002311495.1| predicted protein [Populus trichocarpa] gi|222851315|gb|EEE88862.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/194 (73%), Positives = 152/194 (78%), Gaps = 8/194 (4%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           M KP  DKQ  N+GAWSKQEDQKLIDYIRKHGEGCW  +PQAAGL RCGKSCRLRWINYL
Sbjct: 1   MGKPGRDKQAKNQGAWSKQEDQKLIDYIRKHGEGCWSYLPQAAGLLRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSHLRRKLINMG+
Sbjct: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGV 120

Query: 121 DPKNHRLHHSL-----PHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDEPC 175
           DP NHRL  +L     P N   A+S G Q+  + +P  KP  D   Q SDA SC ED+  
Sbjct: 121 DPNNHRLKQNLLRPHNPPNPASASSSGLQIQAIQKP-TKPHVDK-EQVSDALSCVEDD-S 177

Query: 176 RLLPDLNLDLTMSI 189
             LPDLNLDLT S 
Sbjct: 178 YALPDLNLDLTASF 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23476313|gb|AAN28287.1| myb-like transcription factor 6 [Gossypium raimondii]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/197 (69%), Positives = 152/197 (77%), Gaps = 10/197 (5%)

Query: 1   MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           MRKPCCDKQ TNKGAWSKQEDQKLIDYIR HGEGCWR++P+AAGL RCGKSCRLRWINYL
Sbjct: 1   MRKPCCDKQGTNKGAWSKQEDQKLIDYIRIHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGI 120
           RPD+KRGNFA+DEEDLIIKLHALLGNRWSLIAGRLPGRT NEVKNYWNSH++RKL+ MGI
Sbjct: 61  RPDIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLMKMGI 120

Query: 121 DPKNHRL----HHSLPHNSTGATSLGQQLVDMNEPAVKPRGDDIYQASDAGSCWEDE-PC 175
           DP NH+L    HH  P N T   S+    V           DD    SDA S  EDE P 
Sbjct: 121 DPNNHKLNQYPHHVGPLNPTTTNSMD---VACKLRVFSTENDD--GVSDAASYLEDETPP 175

Query: 176 RLLPDLNLDLTMSIPSS 192
             + +L+LDLT++ PSS
Sbjct: 176 TGISNLDLDLTIAFPSS 192

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.766	0.694	0.611	3.6e-57
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.714	0.595	0.660	7.5e-57
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.584	0.443	0.768	3.3e-56
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.584	0.464	0.728	2.6e-54
TAIR|locus:2131576	274	MYB32 "myb domain protein 32"	0.691	0.540	0.647	3.4e-54
TAIR|locus:1005716764	212	HOS10 "high response to osmoti	0.579	0.584	0.725	2.4e-53
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.584	0.372	0.688	2e-49
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.584	0.389	0.688	5.2e-49
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.584	0.398	0.648	8.7e-49
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.579	0.354	0.661	9.8e-48

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 104/170 (61%), Positives = 136/170 (80%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCC+K  TNKGAW+K+EDQ+L+DYIR HGEGCWR++P++AGL RCGKSCRLRWINYLR
Sbjct:     3 RSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PDLKRGNF +DE+ +IIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H++RKL++ GID
Sbjct:    63 PDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGID 122

Query:   122 PKNHR-LHHSLPHNSTGATSLGQQLVD--MNEPAVKPRGDDIYQASDAGS 168
             P+ HR ++ S   +S     +    V+   +  AVKP+ ++   +SD G+
Sbjct:   123 PQTHRQINESKTVSSQVVVPIQNDAVEYSFSNLAVKPKTEN---SSDNGA 169

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 103/156 (66%), Positives = 131/156 (83%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCC+K   NKGAW+K+EDQ L+DYIRKHGEGCWR++P+AAGL RCGKSCRLRW+NYLR
Sbjct:     3 RSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PDLKRGNF E+E++LIIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H++RKL++ GID
Sbjct:    63 PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGID 122

Query:   122 PKNHRL-HHSLPHNSTGATSLGQQL-VDMNEPAVKP 155
             P +HRL + S+   S+    + + + +D + P VKP
Sbjct:   123 PNSHRLINESVVSPSSLQNDVVETIHLDFSGP-VKP 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 96/125 (76%), Positives = 115/125 (92%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCC+K  TNKGAW+K+ED++L+ YI+ HGEGCWR++P+AAGL RCGKSCRLRWINYLR
Sbjct:     3 RSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PDLKRGNF E+E++LIIKLH+LLGN+WSLIAGRLPGRT NE+KNYWN+H+RRKLIN GID
Sbjct:    63 PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGID 122

Query:   122 PKNHR 126
             P +HR
Sbjct:   123 PTSHR 127

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 91/125 (72%), Positives = 112/125 (89%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCC+K+  NKGAW+K+ED++L+ YI+ HGEGCWR++P+AAGL RCGKSCRLRWINYLR
Sbjct:     3 RSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PDLKRGNF  DE++LIIKLH+LLGN+WSLIA RLPGRT NE+KNYWN+H++RKL++ GID
Sbjct:    63 PDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKGID 122

Query:   122 PKNHR 126
             P  HR
Sbjct:   123 PATHR 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2131576 MYB32 "myb domain protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 99/153 (64%), Positives = 118/153 (77%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCC+K  TNKGAW+K+ED KLI YI+ HGEGCWR++P++AGL RCGKSCRLRWINYLR
Sbjct:     3 RSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PDLKRGNF  +E+DLIIKLH+LLGN+WSLIA RLPGRT NE+KNYWN+H++RKL+  GID
Sbjct:    63 PDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGID 122

Query:   122 PKNHRLHHSLPHNSTGATSLGQQLVDMNEPAVK 154
             P  HR     P N T  +          +P VK
Sbjct:   123 PATHR-----PINETKTSQDSSDSSKTEDPLVK 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:1005716764 HOS10 "high response to osmotic stress 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 90/124 (72%), Positives = 109/124 (87%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCC+K   NKGAW+K+EDQ+LIDYIR HGEG WR++P++ GL RCGKSCRLRWINYLR
Sbjct:     3 RSPCCEKAHMNKGAWTKEEDQRLIDYIRNHGEGSWRSLPKSVGLLRCGKSCRLRWINYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PDLKRGNF + EE +I+KLH+L GN+WSLIAG+LPGRT NE+KNYWN+H++RKL+N GID
Sbjct:    63 PDLKRGNFTDGEEQIIVKLHSLFGNKWSLIAGKLPGRTDNEIKNYWNTHIKRKLLNRGID 122

Query:   122 PKNH 125
             PK H
Sbjct:   123 PKTH 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009631 "cold acclimation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 86/125 (68%), Positives = 102/125 (81%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCCD+    KG W+++ED KLID+I+KHG G WR +P+ AGL RCGKSCRLRW NYLR
Sbjct:     3 RSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PD+KRGNF E+EE  II LH+LLGN+WS IAG LPGRT NE+KNYWN+HLR+KL+ MGID
Sbjct:    63 PDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMGID 122

Query:   122 PKNHR 126
             P  HR
Sbjct:   123 PVTHR 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 86/125 (68%), Positives = 101/125 (80%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCCD+    KG W+ +EDQKLI++IRKHG G WR +P+ AGL RCGKSCRLRW NYLR
Sbjct:     3 RSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PD+KRGNF  +EE  II LH+LLGN+WS IAG LPGRT NE+KNYWN+H+R+KLI MGID
Sbjct:    63 PDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMGID 122

Query:   122 PKNHR 126
             P  HR
Sbjct:   123 PVTHR 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 81/125 (64%), Positives = 101/125 (80%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R  CC KQ   KG WS +ED+KL++YI KHG GCW ++P+ AGL RCGKSCRLRWINYLR
Sbjct:     3 RHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PDLKRG F+ +E++LI++LHA+LGNRWS IA RLPGRT NE+KN WNS +++KL+  GID
Sbjct:    63 PDLKRGAFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGID 122

Query:   122 PKNHR 126
             P  H+
Sbjct:   123 PITHK 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 82/124 (66%), Positives = 102/124 (82%)

Query:     2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             R PCC+K    KG W+ +EDQKL+DYI+KHG G WRT+P+ AGL RCGKSCRLRW NYLR
Sbjct:     3 RSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLR 62

Query:    62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
             PD+KRG F+ +EE+ II+LH+ LGN+WS IA RLPGRT NE+KN+WN+H+R+KL+ MGID
Sbjct:    63 PDIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMGID 122

Query:   122 PKNH 125
             P  H
Sbjct:   123 PVTH 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZP1	MYB4_ARATH	No assigned EC number	0.5560	0.8831	0.6702	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-60
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	1e-58
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-15
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	8e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-06
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	4e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  195 bits (497), Expect = 2e-60
 Identities = 81/125 (64%), Positives = 99/125 (79%)

Query: 2   RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
           R  CC KQ   KG WS +ED+KL+ +I K+G GCW ++P+ AGL RCGKSCRLRWINYLR
Sbjct: 3   RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR 62

Query: 62  PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGID 121
           PDLKRG F++ EE+LII+LHA+LGNRWS IA +LPGRT NE+KN WNS L++KL   GID
Sbjct: 63  PDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGID 122

Query: 122 PKNHR 126
           P  H+
Sbjct: 123 PNTHK 127

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  184 bits (469), Expect = 1e-58
 Identities = 79/123 (64%), Positives = 100/123 (81%)

Query: 4   PCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
           PCC K    +G W+ +ED+ L+ +I+K GEG WR++P+ AGL RCGKSCRLRW+NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 64  LKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPK 123
           +KRG    DEEDLI++LH LLGNRWSLIAGR+PGRT NE+KNYWN+HLR+KL+  GIDP+
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQ 135

Query: 124 NHR 126
            H+
Sbjct: 136 THK 138

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 66.4 bits (163), Expect = 4e-15
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
          +G W+ +ED+ LI+ ++KHG G W  I +     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 8   KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRG 67
           +     G+W + ED+ L   ++K G   W  +         GK    RW N+L P LK+ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 68  NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113
           N++E+E++ +I L   LG +WS IA     RTA +    + + L  
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLED 119

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 61.8 bits (151), Expect = 2e-13
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 66  RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLPGRTANEVKNYWNSHL 111
           RG +  +E++L+I+     GN  WS IA  LPGRT N+ KN WN++L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 56.8 bits (138), Expect = 2e-11
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRP 62
          KG W+++ED+ LI+ ++K+G+  W  I +     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 66  RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRR 113
           +G + E+E++L+I+L    G N W  IA  LPGRTA + +  W + L+ 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 16 WSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEED 75
          W+++ED+KL+  + K+G   W+ I  A  L R   +CR RW   LRP   RG + ++E+ 
Sbjct: 1  WTEEEDEKLLKLVEKYGND-WKQI--AEELGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           W+++ED+ L++ ++K+G+  W  I +     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.2 bits (126), Expect = 8e-10
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 68  NFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHL 111
            + E+E++L+++     G N W  IA  LPGRT  + +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 69  FAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           + E+E++ ++KL    GN W  IA  L GRT +  ++ W   LR K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 16 WSKQEDQKLIDYIRKHGEGCWRTI 39
          W+ +ED+ L++ + K+G G W  I
Sbjct: 3  WTDEEDEALVEGVEKYGVGNWAKI 26

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.89
PLN03212	249	Transcription repressor MYB5; Provisional	99.89
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.86
PLN03091	459	hypothetical protein; Provisional	99.84
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.82
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.71
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.66
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.63
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.54
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.51
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.48
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.28
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.19
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.17
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.06
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.98
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.65
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.06
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.02
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.84
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.75
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.74
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.44
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.25
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.21
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.19
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.18
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.15
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.11
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.01
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.99
PRK13923	170	putative spore coat protein regulator protein YlbO	96.36
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.34
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.33
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.21
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.08
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.88
PRK13923	170	putative spore coat protein regulator protein YlbO	95.72
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.1
KOG2656	445	consensus DNA methyltransferase 1-associated prote	94.72
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	93.81
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.57
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.73
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.25
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	89.34
KOG1194	534	consensus Predicted DNA-binding protein, contains	88.22
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	87.16
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	86.69
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	85.35

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=6e-40  Score=275.30  Aligned_cols=130  Identities=61%  Similarity=1.250  Sum_probs=123.9

Q ss_pred             CCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHH
Q 044864            2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLH   81 (214)
Q Consensus         2 r~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv   81 (214)
                      +.|||+|+++++++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||.|||++|++++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            57999999999999999999999999999999899999999866899999999999999999999999999999999999


Q ss_pred             HhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCC
Q 044864           82 ALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSL  131 (214)
Q Consensus        82 ~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~  131 (214)
                      ..||++|+.||+.|||||+++||+||+.++++++.+.+.++.+..++...
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~~  143 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDAN  143 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999887765443

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=284.37  Aligned_cols=131  Identities=62%  Similarity=1.175  Sum_probs=125.1

Q ss_pred             CCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHH
Q 044864            2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLH   81 (214)
Q Consensus         2 r~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv   81 (214)
                      |++||+|++++||+||+|||++|+++|.+||.++|..||+.++++|+++|||+||.++|+|.+++++||.|||++|++++
T Consensus         3 r~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~   82 (459)
T PLN03091          3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (459)
T ss_pred             CCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999998876899999999999999999999999999999999999


Q ss_pred             HhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCC
Q 044864           82 ALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLP  132 (214)
Q Consensus        82 ~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~  132 (214)
                      ..||++|..||..|||||+++||+||+.+|+++++..++.+.++.++.+..
T Consensus        83 k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E  133 (459)
T PLN03091         83 AVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE  133 (459)
T ss_pred             HHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc
Confidence            999999999999999999999999999999999998888888877766543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=3.1e-36  Score=256.58  Aligned_cols=114  Identities=68%  Similarity=1.207  Sum_probs=108.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhh
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSL   90 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~   90 (214)
                      +.||+||+|||++|+++|++||.++|..||+.+|++|++++||.||.|||+|++++|.||+|||++|++++..+|++|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccc
Q 044864           91 IAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKN  124 (214)
Q Consensus        91 Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e  124 (214)
                      ||++|||||++.||++|+.+|++++...+..+..
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~  120 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPST  120 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999988754444

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.89  E-value=3.4e-25  Score=188.76  Aligned_cols=97  Identities=16%  Similarity=0.222  Sum_probs=92.3

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCC-CCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCc
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP-GRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGA  138 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~  138 (214)
                      +.+.+|+||.|||++|+++|..|| ++|..|++.++ +|++++||.||.+||+|.|+++.||++|+.+|..++. +|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 78999999998 9999999999999999999999999999999999998 99999


Q ss_pred             cccccccCCCCCCCCCCCCC
Q 044864          139 TSLGQQLVDMNEPAVKPRGD  158 (214)
Q Consensus       139 s~~~~~~~~~~~~~vkn~~~  158 (214)
                      +.||..|||||||.|||+++
T Consensus        85 s~IA~~LPGRTDNeIKN~Wn  104 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWN  104 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHH
Confidence            99999999999999999874

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.89  E-value=2.3e-24  Score=181.30  Aligned_cols=109  Identities=17%  Similarity=0.316  Sum_probs=98.5

Q ss_pred             ccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccC-CCCCHHHHHHHHHHHhhhhhhhCCC
Q 044864           43 AGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRL-PGRTANEVKNYWNSHLRRKLINMGI  120 (214)
Q Consensus        43 ~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~l-pgRt~~q~r~rw~~~l~~~~~~~~~  120 (214)
                      ++ .|+..-|.       .+.+++++||+|||++|+++|.+|| .+|..||+.| +|||++|||.||.++|+|.+++++|
T Consensus        10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW   81 (249)
T PLN03212         10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI   81 (249)
T ss_pred             CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence            44 56665553       3578899999999999999999999 7899999998 6999999999999999999999999


Q ss_pred             CccccccccCCCC-CCCCccccccccCCCCCCCCCCCCCc
Q 044864          121 DPKNHRLHHSLPH-NSTGATSLGQQLVDMNEPAVKPRGDD  159 (214)
Q Consensus       121 ~~~e~~~~~~~~~-~~~~~s~~~~~~~~~~~~~vkn~~~~  159 (214)
                      |.+||.+|...+. +|++|+.|+..++||+++.||||++.
T Consensus        82 T~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns  121 (249)
T PLN03212         82 TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNT  121 (249)
T ss_pred             ChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHH
Confidence            9999999888876 89999999999999999999999754

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.86  E-value=1.1e-22  Score=188.40  Aligned_cols=139  Identities=17%  Similarity=0.291  Sum_probs=128.2

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCC---ccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhC-C
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEG---CWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLG-N   86 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G-~   86 (214)
                      +....||+|||.+|+++|+....+   +|.+|-.+|+ ||+..|...||...|+|++++|+||.+||.+|+.+|.+|| .
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k  381 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK  381 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence            445789999999999999998644   7999999999 9999999999999999999999999999999999999999 6


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CC-CCccccccccCCCCC
Q 044864           87 RWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NS-TGATSLGQQLVDMNE  150 (214)
Q Consensus        87 ~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~-~~~s~~~~~~~~~~~  150 (214)
                      .|.+|-..+|||++.|||.||.+.|...++.+.|+-.||..+..+.. +| ..|..+|..|+.++-
T Consensus       382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~  447 (939)
T KOG0049|consen  382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS  447 (939)
T ss_pred             chhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccch
Confidence            79999999999999999999999999999999999999887777665 55 559999999998876

>PLN03091 hypothetical protein; Provisional

Probab=99.84  E-value=1.7e-22  Score=181.46  Aligned_cols=98  Identities=16%  Similarity=0.273  Sum_probs=92.4

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccC-CCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCc
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRL-PGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGA  138 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~l-pgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~  138 (214)
                      +.+++++||+|||++|+++|.+|| .+|..||+.+ +||+++|||.||.++|+|.+++++||++||.+|..++. +|++|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKW   89 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRW   89 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcch
Confidence            578899999999999999999999 6899999988 59999999999999999999999999999999988877 99999


Q ss_pred             cccccccCCCCCCCCCCCCCc
Q 044864          139 TSLGQQLVDMNEPAVKPRGDD  159 (214)
Q Consensus       139 s~~~~~~~~~~~~~vkn~~~~  159 (214)
                      +.|+..++||+++.||||++.
T Consensus        90 skIAk~LPGRTDnqIKNRWns  110 (459)
T PLN03091         90 SQIAAQLPGRTDNEIKNLWNS  110 (459)
T ss_pred             HHHHHhcCCCCHHHHHHHHHH
Confidence            999999999999999999753

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.82  E-value=1e-20  Score=175.42  Aligned_cols=104  Identities=24%  Similarity=0.427  Sum_probs=96.7

Q ss_pred             CCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHH
Q 044864            2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLH   81 (214)
Q Consensus         2 r~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv   81 (214)
                      |+...-.|++++|.||++||.+|+.+|.+||.++|.+|-+.+| +|+..|||+||.|+|+...+.+.||-.||+.|+.+|
T Consensus       349 R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V  427 (939)
T KOG0049|consen  349 RFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAV  427 (939)
T ss_pred             hheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHH
Confidence            4445567999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HhhC-CchhhhcccCCCCCHHHHHHH
Q 044864           82 ALLG-NRWSLIAGRLPGRTANEVKNY  106 (214)
Q Consensus        82 ~~~G-~~W~~Ia~~lpgRt~~q~r~r  106 (214)
                      ..|| ++|.+||..||+||++|.+.|
T Consensus       428 ~~YG~g~WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  428 KVYGKGNWAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             HHHccchHHHHHHHccccchhHHHHH
Confidence            9999 899999999999999665433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.71  E-value=5.1e-18  Score=114.68  Aligned_cols=60  Identities=38%  Similarity=0.887  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHH
Q 044864           16 WSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLI   77 (214)
Q Consensus        16 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L   77 (214)
                      ||+|||++|+.+|..||. +|..||+.|| .|++.||+.||.++|.+.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999994 6999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.66  E-value=9.4e-17  Score=148.32  Aligned_cols=115  Identities=28%  Similarity=0.482  Sum_probs=106.8

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC
Q 044864            7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN   86 (214)
Q Consensus         7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~   86 (214)
                      ...+.+.|.|+..||+.|..+|+.||..+|..||..+. .++++||+.||.++++|.+++..|+.+||..|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            45678899999999999999999999999999999998 79999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCcc
Q 044864           87 RWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPK  123 (214)
Q Consensus        87 ~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~  123 (214)
                      .|+.||..+++|+..+|.+||...+..... ..++..
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~  128 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKL  128 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc-cccccc
Confidence            999999999999999999999999988766 344433

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=8.6e-17  Score=146.33  Aligned_cols=107  Identities=24%  Similarity=0.532  Sum_probs=101.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhh
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSL   90 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~   90 (214)
                      ++.|.|+.-||+.|..+|.+||...|+.|++.+. -.+++||+.||..+|+|.+++..|+.+||++|+.+...+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            4679999999999999999999999999999998 889999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCHHHHHHHHHHHhhhhhhhCC
Q 044864           91 IAGRLPGRTANEVKNYWNSHLRRKLINMG  119 (214)
Q Consensus        91 Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~  119 (214)
                      |+..| ||+++||-.||++.+........
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~  111 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYHY  111 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhhc
Confidence            99999 99999999999999998876543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=4e-16  Score=105.34  Aligned_cols=59  Identities=29%  Similarity=0.574  Sum_probs=53.3

Q ss_pred             CChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCcccccc
Q 044864           69 FAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRL  127 (214)
Q Consensus        69 Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~  127 (214)
                      ||++||++|+++|..||.+|..||..|+.||+.+|++||..+|.+.+.+++|+++|+..
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~   59 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQR   59 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhc
Confidence            99999999999999999999999999966999999999999999999999999999864

...

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.54  E-value=6.4e-15  Score=137.58  Aligned_cols=135  Identities=23%  Similarity=0.440  Sum_probs=107.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCC--cCCCCChHHHHHHHHHHH-------
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDL--KRGNFAEDEEDLIIKLHA-------   82 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~--~~~~Wt~eED~~L~~lv~-------   82 (214)
                      .+|+||+||++.|..+|.++| ++|..|+..|+  |.+..|++||.+|...+-  +++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999 56999999996  999999999999998884  899999999999999995       


Q ss_pred             hh-------------------CCchhhhcccCCCCCHHHHHHHHHHHhhhhhhh-CCCCcccc--ccccCCC-----C-C
Q 044864           83 LL-------------------GNRWSLIAGRLPGRTANEVKNYWNSHLRRKLIN-MGIDPKNH--RLHHSLP-----H-N  134 (214)
Q Consensus        83 ~~-------------------G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~-~~~~~~e~--~~~~~~~-----~-~  134 (214)
                      .+                   +.+|..|+..+..|+..||+-+|+.++...... ..+...-+  .++-.+.     . .
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~  539 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES  539 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence            33                   136999999999999999999999988877554 44443111  1111111     1 2


Q ss_pred             CCCccccccccCCCC
Q 044864          135 STGATSLGQQLVDMN  149 (214)
Q Consensus       135 ~~~~s~~~~~~~~~~  149 (214)
                      .--|..++...++..
T Consensus       540 ~IDW~~l~~~~~g~~  554 (607)
T KOG0051|consen  540 PIDWKSLAEYAPGES  554 (607)
T ss_pred             ccCHHHHHHhCCCCC
Confidence            344888888877764

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.51  E-value=3.1e-15  Score=96.85  Aligned_cols=48  Identities=35%  Similarity=0.795  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL   60 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l   60 (214)
                      ||+||+|||++|+++|.+||.++|..||..|+.+||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998889999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.48  E-value=3.6e-14  Score=91.80  Aligned_cols=46  Identities=33%  Similarity=0.702  Sum_probs=41.8

Q ss_pred             CCCCChHHHHHHHHHHHhhCCc-hhhhcccCC-CCCHHHHHHHHHHHh
Q 044864           66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTANEVKNYWNSHL  111 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~-W~~Ia~~lp-gRt~~q~r~rw~~~l  111 (214)
                      +++||+|||++|+++|.+||.. |..||..|+ |||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999977 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.28  E-value=5.9e-12  Score=79.97  Aligned_cols=47  Identities=43%  Similarity=0.892  Sum_probs=44.3

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      +++||++||.+|+.++..|| .+|..||..|++||+.+|+.||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999 999999999999999999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.20  E-value=7.7e-12  Score=117.12  Aligned_cols=141  Identities=20%  Similarity=0.246  Sum_probs=111.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHh----CC-------------------Ccccccccccccccccccccc---chhhcccCCCc
Q 044864           12 NKGAWSKQEDQKLIDYIRKH----GE-------------------GCWRTIPQAAGLARCGKSCRL---RWINYLRPDLK   65 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~----g~-------------------~~W~~Ia~~~~~~Rs~~qcr~---Rw~~~l~p~~~   65 (214)
                      +-+.|+.+||+.|...|..|    |-                   +.|..|...|| .|+....+.   |-++.|.+  .
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~--~  383 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN--K  383 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--c
Confidence            44899999999999999988    10                   13778888888 699988877   33334443  8


Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh--hhhCCCCccccccccCCC-----------
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK--LINMGIDPKNHRLHHSLP-----------  132 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~--~~~~~~~~~e~~~~~~~~-----------  132 (214)
                      +|.||++|++.|..+|.++|+.|..|+..| ||.+..|+.||.++....  ..++.|+.+|...+....           
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q  462 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQ  462 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999 999999999999999887  589999988866443221           


Q ss_pred             --------C--------CCCCccccccccCCCCCCCCCCC
Q 044864          133 --------H--------NSTGATSLGQQLVDMNEPAVKPR  156 (214)
Q Consensus       133 --------~--------~~~~~s~~~~~~~~~~~~~vkn~  156 (214)
                              +        .+-.|+.++..+..|+-.++.-.
T Consensus       463 ~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~K  502 (607)
T KOG0051|consen  463 ASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYK  502 (607)
T ss_pred             ccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHH
Confidence                    1        23458888887777766555443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.19  E-value=7.2e-12  Score=79.56  Aligned_cols=48  Identities=38%  Similarity=0.864  Sum_probs=44.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhccc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      ++.||++||++|+.++..||..+|..||..|+ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999767999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.17  E-value=4.4e-11  Score=74.75  Aligned_cols=44  Identities=34%  Similarity=0.757  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHh
Q 044864           68 NFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHL  111 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l  111 (214)
                      +||.+|+..|+.++..|| .+|..||..|++||..+|+.||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.06  E-value=5.9e-11  Score=74.14  Aligned_cols=45  Identities=36%  Similarity=0.809  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc
Q 044864           15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL   60 (214)
Q Consensus        15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l   60 (214)
                      .||++||+.|+.++..||.++|..||..++ +|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999778999999999 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.98  E-value=4.1e-11  Score=111.16  Aligned_cols=100  Identities=21%  Similarity=0.273  Sum_probs=91.4

Q ss_pred             CCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCccc
Q 044864           63 DLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATS  140 (214)
Q Consensus        63 ~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~  140 (214)
                      ..+.|.|+..||+.|..+|..|| ++|+.||..|.-+++++|+.||++++.+.+++.+|+.+|+..+..+.. .|+.|+.
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wst   96 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST   96 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhh
Confidence            45678999999999999999999 789999999988999999999999999999999999999998888776 8999999


Q ss_pred             cccccCCCCCCCCCCCCCcccc
Q 044864          141 LGQQLVDMNEPAVKPRGDDIYQ  162 (214)
Q Consensus       141 ~~~~~~~~~~~~vkn~~~~~~~  162 (214)
                      |+...++++..++.+++...+.
T Consensus        97 ia~~~d~rt~~~~~ery~~~~~  118 (512)
T COG5147          97 IADYKDRRTAQQCVERYVNTLE  118 (512)
T ss_pred             hccccCccchHHHHHHHHHHhh
Confidence            9999999999999888754444

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=7.8e-09  Score=94.96  Aligned_cols=93  Identities=19%  Similarity=0.291  Sum_probs=81.4

Q ss_pred             CcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCcccc
Q 044864           64 LKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATSL  141 (214)
Q Consensus        64 ~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~~  141 (214)
                      ++.|.|+.-||+.|-.+|.+|| +.|+.|++.++-.|..||+.||..+++|.|++..|+.+||..++.+.. ..+.|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            4678999999999999999999 789999999999999999999999999999999999999987666655 78889999


Q ss_pred             ccccCCCCCCCCCCCC
Q 044864          142 GQQLVDMNEPAVKPRG  157 (214)
Q Consensus       142 ~~~~~~~~~~~vkn~~  157 (214)
                      +..+ ||+.+++-.|+
T Consensus        85 a~i~-gr~~~qc~eRy   99 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERY   99 (617)
T ss_pred             HHHh-hhhHHHHHHHH
Confidence            9876 55666655554

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.06  E-value=1.5e-06  Score=78.73  Aligned_cols=49  Identities=18%  Similarity=0.516  Sum_probs=45.8

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL   60 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l   60 (214)
                      +-...||.+|+-+|++++..||.|||..||.++| .|+..+|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            4567899999999999999999999999999999 999999999999854

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.02  E-value=3.2e-06  Score=56.64  Aligned_cols=48  Identities=13%  Similarity=0.315  Sum_probs=42.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCcc---ccccccccccc-cccccccchhhcc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCW---RTIPQAAGLAR-CGKSCRLRWINYL   60 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W---~~Ia~~~~~~R-s~~qcr~Rw~~~l   60 (214)
                      +-.||+||..+++++|+.+|.++|   ..|++.|...+ |..||+.++..|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            567999999999999999998899   99999887556 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.84  E-value=2.2e-05  Score=71.31  Aligned_cols=50  Identities=24%  Similarity=0.415  Sum_probs=45.2

Q ss_pred             CCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           63 DLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        63 ~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      .+-...||.+|+-+|++++..|| ++|..||.++..|+..+|+.+|.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            44566899999999999999999 999999999988999999999987654

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.75  E-value=4.5e-05  Score=63.29  Aligned_cols=99  Identities=18%  Similarity=0.375  Sum_probs=72.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCcccccccccccc--ccccccccchhhcc-cCCC--------------------cCCCCCh
Q 044864           15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA--RCGKSCRLRWINYL-RPDL--------------------KRGNFAE   71 (214)
Q Consensus        15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~--Rs~~qcr~Rw~~~l-~p~~--------------------~~~~Wt~   71 (214)
                      +|++++|-+|+.+|..-.  +-..|+..+...  -|-..+.+||+..| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998765  366666655432  36678889998765 4332                    3668999


Q ss_pred             HHHHHHHHHHHhhC---Cchhhh----cccC-CCCCHHHHHHHHHHHhhhhh
Q 044864           72 DEEDLIIKLHALLG---NRWSLI----AGRL-PGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        72 eED~~L~~lv~~~G---~~W~~I----a~~l-pgRt~~q~r~rw~~~l~~~~  115 (214)
                      +|+++|........   ..+.+|    ...| ++||++++.++|..+.+..+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            99999999776554   346666    2223 88999999999986655543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.74  E-value=6.7e-05  Score=50.22  Aligned_cols=47  Identities=21%  Similarity=0.252  Sum_probs=40.5

Q ss_pred             CCCCChHHHHHHHHHHHhhCC-ch---hhhcccCC-CC-CHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALLGN-RW---SLIAGRLP-GR-TANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~-~W---~~Ia~~lp-gR-t~~q~r~rw~~~l~  112 (214)
                      +-.||+||..+.++++..||. +|   ..|+..|. .+ |..||+.+...+..
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999995 99   99999873 45 99999998876653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.44  E-value=0.00015  Score=57.94  Aligned_cols=51  Identities=20%  Similarity=0.359  Sum_probs=44.3

Q ss_pred             cCCCCChHHHHHHHHHHHhh---C----CchhhhcccCCCCCHHHHHHHHHHHhhhhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALL---G----NRWSLIAGRLPGRTANEVKNYWNSHLRRKLI  116 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~---G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~  116 (214)
                      +...||.|||.+|.+.|-.|   |    .-+..++..| +||+..|.-||++++++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence            45689999999999999887   3    2388999999 99999999999999998754

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.25  E-value=0.0001  Score=67.60  Aligned_cols=46  Identities=24%  Similarity=0.567  Sum_probs=42.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      ....||.+|..+|+++|+.||. +|.+||.+++ +|+.-||..||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            4568999999999999999995 5999999999 99999999999864

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.21  E-value=0.0003  Score=64.64  Aligned_cols=45  Identities=16%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSH  110 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~  110 (214)
                      ...||.+|..+|++.+..||..|.+||.++.++|..||--+|.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            448999999999999999999999999999999999999999753

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.19  E-value=0.00016  Score=67.69  Aligned_cols=47  Identities=21%  Similarity=0.616  Sum_probs=42.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      --++.||.+|+-+|+++|+.||. +|.+||.+++ +|+..||..++.+.
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            34789999999999999999995 5999999999 99999999998764

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.18  E-value=0.00056  Score=46.98  Aligned_cols=50  Identities=18%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             CCCCChHHHHHHHHHHHhhC-------C--chhhhcccCC-CCCHHHHHHHHHHHhhhhh
Q 044864           66 RGNFAEDEEDLIIKLHALLG-------N--RWSLIAGRLP-GRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G-------~--~W~~Ia~~lp-gRt~~q~r~rw~~~l~~~~  115 (214)
                      +.+||.+||..|++.|..+.       +  -|..++..-+ .+|-...|+||...|.++.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997653       1  2999998877 9999999999999888764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.15  E-value=0.00053  Score=64.35  Aligned_cols=46  Identities=17%  Similarity=0.361  Sum_probs=42.6

Q ss_pred             cCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 044864           65 KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSH  110 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~  110 (214)
                      .+..||.+|..+|++.+..||.+|.+||.++.+||..||-.+|..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3668999999999999999999999999999999999999988653

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.11  E-value=0.0004  Score=49.73  Aligned_cols=49  Identities=27%  Similarity=0.513  Sum_probs=35.8

Q ss_pred             CCCChHHHHHHHHHHHh------hC--C------chhhhcccC----CCCCHHHHHHHHHHHhhhhh
Q 044864           67 GNFAEDEEDLIIKLHAL------LG--N------RWSLIAGRL----PGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        67 ~~Wt~eED~~L~~lv~~------~G--~------~W~~Ia~~l----pgRt~~q~r~rw~~~l~~~~  115 (214)
                      ..||.+|...||.++..      ++  +      -|..||..|    ..||+.||+++|.++.+...
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            47999999999999877      21  1      399999887    46999999999999777764

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.01  E-value=0.00021  Score=49.05  Aligned_cols=51  Identities=20%  Similarity=0.489  Sum_probs=33.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhC--------CCccccccccccccccccccccchhhcccCC
Q 044864           13 KGAWSKQEDQKLIDYIRKHG--------EGCWRTIPQAAGLARCGKSCRLRWINYLRPD   63 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g--------~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~   63 (214)
                      +.+||.|||+.|+++|..+.        ..=|..+++..+..+|-.+-++||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            46899999999999997662        2239999887765788899999999988764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.99  E-value=0.00025  Score=56.78  Aligned_cols=50  Identities=32%  Similarity=0.701  Sum_probs=42.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhC-CC-----ccccccccccccccccccccchhhcccC
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHG-EG-----CWRTIPQAAGLARCGKSCRLRWINYLRP   62 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g-~~-----~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p   62 (214)
                      .++..||.|||.+|.+.|-+|= .|     ....|+..++  ||+..|.-||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            4678999999999999999992 11     4788888885  9999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.36  E-value=0.0036  Score=50.75  Aligned_cols=50  Identities=18%  Similarity=0.347  Sum_probs=42.3

Q ss_pred             cCCCCChHHHHHHHHHHHhhCC-------chhhhcccCCCCCHHHHHHHHHHHhhhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLGN-------RWSLIAGRLPGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G~-------~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~  115 (214)
                      +...||.|+|.+|-+.|..|+.       -...++..| +||..+|..||+..+++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            4668999999999999888872       266777888 9999999999999999764

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.34  E-value=0.001  Score=47.64  Aligned_cols=46  Identities=26%  Similarity=0.687  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHHHHHH--h----CC-------Cccccccccc---cccccccccccchhhc
Q 044864           14 GAWSKQEDQKLIDYIRK--H----GE-------GCWRTIPQAA---GLARCGKSCRLRWINY   59 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~--~----g~-------~~W~~Ia~~~---~~~Rs~~qcr~Rw~~~   59 (214)
                      ..||.+|...|+.++..  +    +.       .-|..||..|   |..|++.||+.+|.++
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            57999999999999888  2    11       1399999876   4579999999999875

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.33  E-value=0.0011  Score=58.49  Aligned_cols=48  Identities=21%  Similarity=0.525  Sum_probs=44.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhccc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      ---|+..|+-+|++.....|.|||..||.++| .|....|+++|..++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            34699999999999999999999999999999 9999999999988654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.21  E-value=0.01  Score=41.56  Aligned_cols=49  Identities=27%  Similarity=0.535  Sum_probs=40.3

Q ss_pred             CCCCChHHHHHHHHHHHhhC----C-------------chhhhcccC-----CCCCHHHHHHHHHHHhhhh
Q 044864           66 RGNFAEDEEDLIIKLHALLG----N-------------RWSLIAGRL-----PGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G----~-------------~W~~Ia~~l-----pgRt~~q~r~rw~~~l~~~  114 (214)
                      ...||.+|...|++++.+|.    +             -|..|+..|     +.||..+++.+|.++....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999998873    1             399998876     3699999999998876654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.08  E-value=0.0054  Score=54.21  Aligned_cols=47  Identities=28%  Similarity=0.434  Sum_probs=43.1

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      -..|+.+|+.+|++....+| ++|..||.++..|+...|+.+|..+..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            44799999999999999999 999999999988999999999976655

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.88  E-value=0.016  Score=59.03  Aligned_cols=100  Identities=16%  Similarity=0.305  Sum_probs=77.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCcccccccccccccccccccc-------chhhc----------------------------
Q 044864           15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRL-------RWINY----------------------------   59 (214)
Q Consensus        15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~-------Rw~~~----------------------------   59 (214)
                      .||..|=..++.+..+||..+-..||..|. +++...++.       ||..+                            
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999989999999997 788776653       22110                            


Q ss_pred             --------------cc-CCCcCCCCChHHHHHHHHHHHhhC-Cchhhhcc------------cCCCCCHHHHHHHHHHHh
Q 044864           60 --------------LR-PDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAG------------RLPGRTANEVKNYWNSHL  111 (214)
Q Consensus        60 --------------l~-p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~------------~lpgRt~~q~r~rw~~~l  111 (214)
                                    +. +..++..||++||..|+-.+.+|| ++|..|-.            ++..||+..+..|...+|
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          00 122344699999999999999999 88998832            235799999999999888


Q ss_pred             hhhh
Q 044864          112 RRKL  115 (214)
Q Consensus       112 ~~~~  115 (214)
                      .-..
T Consensus       985 ~~~~  988 (1033)
T PLN03142        985 RLIE  988 (1033)
T ss_pred             HHHH
Confidence            7653

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.72  E-value=0.0021  Score=52.06  Aligned_cols=50  Identities=24%  Similarity=0.564  Sum_probs=40.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCC------ccccccccccccccccccccchhhcccC
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEG------CWRTIPQAAGLARCGKSCRLRWINYLRP   62 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~------~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p   62 (214)
                      .++..||.|||.+|.+.|-.|+..      ....++..+  +|++.+|..||+.+++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vrk   58 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVRK   58 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHHH
Confidence            568899999999999999999633      255566666  59999999999777653

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.10  E-value=0.0055  Score=42.90  Aligned_cols=49  Identities=24%  Similarity=0.478  Sum_probs=39.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC----------------Cccccccccc----cccccccccccchhhcc
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGE----------------GCWRTIPQAA----GLARCGKSCRLRWINYL   60 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~----------------~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~l   60 (214)
                      ++..||.+|.+.|+++|.+|..                ..|..|+..|    +..|+..|++..|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999821                2499999866    12689999999998754

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=94.72  E-value=0.069  Score=48.46  Aligned_cols=87  Identities=22%  Similarity=0.363  Sum_probs=66.5

Q ss_pred             ccccccccccccccccccccchhhcccCC-------------------------CcCCCCChHHHHHHHHHHHhhCCchh
Q 044864           35 CWRTIPQAAGLARCGKSCRLRWINYLRPD-------------------------LKRGNFAEDEEDLIIKLHALLGNRWS   89 (214)
Q Consensus        35 ~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~-------------------------~~~~~Wt~eED~~L~~lv~~~G~~W~   89 (214)
                      .|.-++=..+ -|...--..+|....++.                         +....||.+|-+-|.+|...|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4766654444 677777777777663321                         23457999999999999999999999


Q ss_pred             hhccc-----CCC-CCHHHHHHHHHHHhhhhhhhCCCCc
Q 044864           90 LIAGR-----LPG-RTANEVKNYWNSHLRRKLINMGIDP  122 (214)
Q Consensus        90 ~Ia~~-----lpg-Rt~~q~r~rw~~~l~~~~~~~~~~~  122 (214)
                      .||..     ++. ||-..+++||+...+..++...-+.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~  192 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPSN  192 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence            99988     555 9999999999999888877655543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=93.81  E-value=0.082  Score=47.86  Aligned_cols=45  Identities=20%  Similarity=0.396  Sum_probs=42.1

Q ss_pred             CCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           68 NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      +||.+|-++..++...+|..++.|+..+|.|..+||+-+|.+--+
T Consensus       367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999999976443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.57  E-value=0.2  Score=38.39  Aligned_cols=52  Identities=19%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             CCcCCCCChHHHHHHHHHHHhhCC----chhhhccc------------CCCCCHHHHHHHHHHHhhhh
Q 044864           63 DLKRGNFAEDEEDLIIKLHALLGN----RWSLIAGR------------LPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        63 ~~~~~~Wt~eED~~L~~lv~~~G~----~W~~Ia~~------------lpgRt~~q~r~rw~~~l~~~  114 (214)
                      ..++..||++||.-|+-.+.+||-    .|..|-..            +..||+..+..|...++.-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            456779999999999999999994    79888542            24699999999998887653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.73  E-value=0.26  Score=44.11  Aligned_cols=51  Identities=16%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             CCCCChHHHHHHHHHHHhh----------CCchhhhcccC----CCCCHHHHHHHHHHHhhhhhh
Q 044864           66 RGNFAEDEEDLIIKLHALL----------GNRWSLIAGRL----PGRTANEVKNYWNSHLRRKLI  116 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~----------G~~W~~Ia~~l----pgRt~~q~r~rw~~~l~~~~~  116 (214)
                      ...|+.+|-..||++....          +.-|..||..+    .-||+.||+.+|.++.++.-+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999887643          23499999965    459999999999998887643

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.25  E-value=0.19  Score=38.50  Aligned_cols=34  Identities=32%  Similarity=0.545  Sum_probs=28.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC---Cccccccccc
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGE---GCWRTIPQAA   43 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~   43 (214)
                      +.++..||.+||.-|+-++.+||.   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            667889999999999999999998   8899997765

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=89.34  E-value=0.8  Score=32.80  Aligned_cols=47  Identities=23%  Similarity=0.486  Sum_probs=35.0

Q ss_pred             CCChHHHHHHHHHHHhh---CC----------chhhhcccC---CC--CCHHHHHHHHHHHhhhh
Q 044864           68 NFAEDEEDLIIKLHALL---GN----------RWSLIAGRL---PG--RTANEVKNYWNSHLRRK  114 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~---G~----------~W~~Ia~~l---pg--Rt~~q~r~rw~~~l~~~  114 (214)
                      .||++++..|++++.+.   |+          .|..|+..|   +|  .+..||++||..+.+..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999988553   21          389998877   23  47899999997665544

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=88.22  E-value=0.85  Score=42.37  Aligned_cols=47  Identities=17%  Similarity=0.349  Sum_probs=42.4

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      ...||.||-.++-++...||.++.+|-+.||.|+-..+..+|+..-+
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999998875443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=87.16  E-value=0.32  Score=44.15  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc--ccCCC------cCCCCChHHHHHHH
Q 044864           14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY--LRPDL------KRGNFAEDEEDLII   78 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~--l~p~~------~~~~Wt~eED~~L~   78 (214)
                      -+||.+|-+++.++....|.. +..|+..+| .|..+|+...|.+-  .+|..      .+-++..+|-..|.
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtd-F~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~  436 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTD-FSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLR  436 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcch-HHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHH
Confidence            489999999999999999965 999999999 99999999999863  33321      24467766655433

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=86.69  E-value=1.5  Score=27.91  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           71 EDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        71 ~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      ++++..++.++...|-.+.+||..+ |.|...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            3567788888888999999999999 9999999988776554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=85.35  E-value=0.87  Score=32.71  Aligned_cols=28  Identities=36%  Similarity=0.662  Sum_probs=16.4

Q ss_pred             CCCcCCCCHHHHHHH--------HHHHHHhCCCcccccc
Q 044864           10 DTNKGAWSKQEDQKL--------IDYIRKHGEGCWRTIP   40 (214)
Q Consensus        10 ~~~kg~WT~eED~~L--------~~~v~~~g~~~W~~Ia   40 (214)
                      .--.|-||+|+|+.|        ..++++||   +..|+
T Consensus        44 ~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~   79 (87)
T PF11626_consen   44 DNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIE   79 (87)
T ss_dssp             TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHH
T ss_pred             CCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence            345889999999999        35677887   44554

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		6e-24
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		9e-24
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-22
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-22
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-22
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		7e-14
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-09
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		1e-08
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		1e-07
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		5e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		5e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-05

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 10  DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNF 69
           D  KG W+K+EDQK+I+ ++K+G   W  I +     R GK CR RW N+L P++K+ ++
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSW 62
Query: 70  AEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
            E+E+ +I + H +LGNRW+ IA  LPGRT N VKN+WNS ++RK+
Sbjct: 63  TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 10  DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNF 69
           + NKG W+K+EDQ++I++++K+G   W  I +     R GK CR RW N+L P++K+ ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82
Query: 70  AEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
            E+E+ +I + H  LGNRW+ IA  LPGRT N VKN+WNS +RRK+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           KG W+K+EDQ++I  ++K+G   W  I +     R GK CR RW N+L P++K+ ++ E+
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           E+ +I + H  LGNRW+ IA  LPGRT N +KN+WNS +RRK+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           KG W+K+EDQ++I  ++K+G   W  I +     R GK CR RW N+L P++K+ ++ E+
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           E+ +I + H  LGNRW+ IA  LPGRT N +KN+WNS +RRK+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           KG W+K+EDQ++I  ++K+G   W  I +     R GK CR RW N+L P++K+ ++ E+
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           E+ +I + H  LGNRW+ IA  LPGRT N +KN+WNS +RRK+
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           KG +++ ED  + +Y++++G   W  I  +    R  K CR RW N+L P + +  +  +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRI-TSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           E++ I + +  LG++WS+IA  +PGRT N +KN WNS + +++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 64  LKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           +K+ ++ E+E+ +I + H  LGNRW+ IA  LPGRT N +KN+WNS +RRK+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 40/53 (75%)
Query: 63  DLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           ++K+ ++ E+E+ ++ + H  LGNRW+ IA  LPGRT N +KN+WNS +RRK+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           K  ++ +ED+ L   + +HG   W+ I  A    R  + CR RW NYL P +    +  +
Sbjct: 11  KQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTAE 68
Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYW 107
           E+ L+++     G +W++IA   PGRT   +KN W
Sbjct: 69  EDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           K  ++++ED KL   + ++G   W  I Q   + R  + CR RW NY+ P L+   ++ +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYW 107
           E+ L+ + +A  G +W+ I+  L  R+ N ++N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
          KG W+K+EDQ++I+ ++K+G   W  I +     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
          KG W+K+EDQ+LI  ++K+G   W  I +     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
          KG W+K+EDQ++I  ++K+G   W  I +     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-66
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-64
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-62
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-16
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	7e-56
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-51
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-51
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-30
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	5e-25
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-21
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	5e-19
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	5e-06
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-14
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	8e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	9e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-05
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	7e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	4e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	8e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	4e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  199 bits (508), Expect = 3e-66
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           KG +++ ED  + +Y++++G   W  I       R  K CR RW N+L P + +  +  +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLP 132
           E++ I + +  LG++WS+IA  +PGRT N +KN WNS + +++       +      S  
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 133 HNST 136
             + 
Sbjct: 121 RKAA 124

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  194 bits (495), Expect = 1e-64
 Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 10  DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNF 69
           +  KG W+K+EDQ++I  ++K+G   W  I +     R GK CR RW N+L P++K+ ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 70  AEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
            E+E+ +I + H  LGNRW+ IA  LPGRT N +KN+WNS +RRK+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  190 bits (484), Expect = 1e-62
 Identities = 50/108 (46%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 8   KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRG 67
             + NKG W+K+EDQ++I++++K+G   W  I +     R GK CR RW N+L P++K+ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 68  NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           ++ E+E+ +I + H  LGNRW+ IA  LPGRT N VKN+WNS +RRK+
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 71.8 bits (177), Expect = 2e-16
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 47  RCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNR-WSLIAGRLPGRTANEVKN 105
           R    C+ RW   L P+L +G + ++E+  +I+     G + WS IA  L GR   + + 
Sbjct: 8   RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67

Query: 106 YWNSHLR 112
            W++HL 
Sbjct: 68  RWHNHLN 74

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  172 bits (439), Expect = 7e-56
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 7   DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKR 66
           + +   K  ++ +ED+ L   + +HG   W+ I       R  + CR RW NYL P +  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 67  GNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHR 126
             +  +E+ L+++     G +W++IA   PGRT   +KN W +   +  I        H 
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

Query: 127 LHH 129
            HH
Sbjct: 123 HHH 125

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  161 bits (409), Expect = 1e-51
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 13  KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           K  ++++ED KL   + ++G   W  I Q     R  + CR RW NY+ P L+   ++ +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 73  EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           E+ L+ + +A  G +W+ I+  L  R+ N ++N W    R + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  162 bits (413), Expect = 2e-51
 Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 10  DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNF 69
           +  KG W+K+EDQ++I  ++K+G   W  I +     R GK CR RW N+L P++K+ ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113

Query: 70  AEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
            E+E+ +I + H  LGNRW+ IA  LPGRT N +KN+WNS +RRK+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  108 bits (272), Expect = 3e-30
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 12  NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAE 71
            K  W+++ED+KL   + ++G   W+ I       R    C+ RW   L P+L +G + +
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTK 63

Query: 72  DEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR 112
           +E+  +IKL    G  RWS+IA  L GR   + +  W++HL 
Sbjct: 64  EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 91.4 bits (228), Expect = 5e-25
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
          KG W+K+EDQ+LI  ++K+G   W  I +     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 81.9 bits (203), Expect = 4e-21
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAED 72
           G W   ED+ L   + K+G+  W  I       +  K C+ RW  +L P +K+  ++  
Sbjct: 9  GGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGP 67

Query: 73 EE 74
            
Sbjct: 68 SS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR 112
               K G +   E++++       G N+WS IA  L  ++A + K  W   L 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 76.1 bits (188), Expect = 5e-19
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
           K  W+++ED+KL   + ++G   W+ I       R    C+ RW   L P+
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 41.4 bits (98), Expect = 5e-06
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 64  LKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR 112
           L +  +  +E++ + KL    G + W +IA  LP RT  + ++ W   L 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 64.9 bits (159), Expect = 1e-14
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA-RCGKSCRLRWINYLRPDLK 65
          + K  W+ +ED++L   +R+ G+  W+ +  A+    R  + C+ RW+  L     
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFL--ASHFPNRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLGNR-WSLIAGRLPGRTANEVKNYWNSHLR 112
                +  +  +E++ +  L    G + W  +A   P RT  + +  W   L 
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.1 bits (125), Expect = 9e-10
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAE 71
           K  WS++E++KL+   +      WRTI    G  R    C   +   L    +R +   
Sbjct: 8  KKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDSGPS 64

Query: 72 D 72
           
Sbjct: 65 S 65

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 64  LKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
            K+  ++ +EE+ ++ L  L+  +W  IA  + GRTA +   ++   L +  
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTAAQCLEHYEFLLDKAA 57

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 49.2 bits (118), Expect = 7e-09
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA-RCGKSCRLRWINYLR 61
          + AW  +ED+ L   +RK+GEG W  I        R     + RW    +
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60
           +   +W+ QE+  L++ +   G G W+ +       +  + C   ++ Y 
Sbjct: 5  SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA---RCGKSCRLRWINYLR-----PD 63
           +  +S  E + L+  + K G G WR +   A      R     + +W   +      P 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 64 LKRGNFAEDE-EDLIIKLHALLGNRWS 89
           +RG     E  + ++  H     +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA-RCGKSCRLRWINYLRPDLKRGNFAE 71
          + AW  +ED+ L   +RK+GEG W  I        R     + RW        K    + 
Sbjct: 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM----KKLKLISS 65

Query: 72 DEED 75
          D ED
Sbjct: 66 DSED 69

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 16 WSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY 59
          W   E+  LID     G G W  I    G AR  + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAA---GLARCGKSCRLRWINYLR-----PDLKR 66
           +S  E + L++ +   G G WR +   A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 67 GN-FAEDEEDLIIKLHALLGNR 87
          G    +D  D ++  HA    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA-RCGKSCRLRWINYLRPDL 64
          K  W+ +E + +   ++K+GEG W  I +      R     + RW    R  +
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA-RCGKSCRLRWINYLRPDL 64
           K  W+ +E + +   ++K+GEG W  I +      R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 12  NKGAWSKQEDQKLIDYIRKHGEGCWRTI---PQAAGLARCGKSCRLRWINYLR-----PD 63
            +  ++  E + L++ +   G G WR +          R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 64  LKRGNFAEDE-EDLIIKLHALLGNRWS 89
            +RG     E  D ++   A      S
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 42.9 bits (100), Expect = 8e-06
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 12  NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA---RCGKSCRLRWINYLR-----PD 63
            +  +S  E + L++ +   G G WR +   A      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 64  LKRGN-FAEDEEDLIIKLHALLGNRWS 89
            +RG    +D  D ++  HA    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 12  NKGAWSKQEDQKLIDYIRKHGEG-----CWRTIPQAAGLARCGKSCRLRWINYLRPDLKR 66
           NK +++ +ED+ ++D +RK+         +  I         G S R R+  YL   L+ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 67  GNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTAN 101
               +    L+       GN        LP     
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIKT--KVLPPSIKR 95

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 9  QDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRW 56
             + G ++ +E +KL +   KHG   W TI   A L R   S + R 
Sbjct: 19 DRNHVGKYTPEEIEKLKELRIKHG-NDWATI--GAALGRSASSVKDRC 63

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 53  RLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR 112
                +  R +L    + E+E     K     G  WS IA  +  +T ++ KN++ ++ +
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 113 R 113
           R
Sbjct: 63  R 63

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 7  DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY 59
           K  +    W++QE   L++ +  +    W  + +  G +R    C L ++  
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.88
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.88
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.88
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.87
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.87
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.78
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.76
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.76
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.75
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.75
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.75
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.75
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.74
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.73
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.72
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.72
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.7
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.7
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.7
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.68
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.67
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.65
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.64
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.63
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.63
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.63
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.63
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.62
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.62
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.6
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.59
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.57
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.33
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.54
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.53
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.52
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.49
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.48
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.47
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.46
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.43
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.42
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.13
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.38
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.38
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.33
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.26
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.14
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.13
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.07
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.96
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.94
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.92
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.76
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.71
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.67
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.64
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.62
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.6
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.58
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.5
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.28
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.24
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.18
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.18
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.15
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.08
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.3
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.88
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.82
2crg_A	70	Metastasis associated protein MTA3; transcription	97.79
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.74
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.64
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.46
2crg_A	70	Metastasis associated protein MTA3; transcription	97.38
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.37
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.19
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.24
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.07
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.02
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.89
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.54
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.39
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	94.92
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.47
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.11
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.52
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	88.74

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=3.9e-43  Score=280.82  Aligned_cols=150  Identities=25%  Similarity=0.513  Sum_probs=104.8

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC-ch
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN-RW   88 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~-~W   88 (214)
                      ++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            57899999999999999999999889999999998 99999999999999999999999999999999999999995 79


Q ss_pred             hhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCccccccccCCCCCCCCCCCCCcc
Q 044864           89 SLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATSLGQQLVDMNEPAVKPRGDDI  160 (214)
Q Consensus        89 ~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~~~~~~~~~~~~~vkn~~~~~  160 (214)
                      ..||..|||||++||++||.++|.+.+++++||++||.++..++. +|+.|+.|+..++||+++.|+||+...
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~  154 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST  154 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888776 899999999999999999999986443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=5.1e-37  Score=238.21  Aligned_cols=128  Identities=28%  Similarity=0.558  Sum_probs=108.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIA   92 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia   92 (214)
                      ||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCCCCCCccccccc
Q 044864           93 GRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNSTGATSLGQQ  144 (214)
Q Consensus        93 ~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~s~~~~~  144 (214)
                      ..|||||++||++||+++|++.+....++.+--.+   .......|+.+++.
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p---~~~kk~~~~~i~k~  129 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP---DRSKKRKAADVPKK  129 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC---CCC-----------
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc---hhhhhhhhhhcchh
Confidence            99999999999999999999999888776544322   22235556666554

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=2.7e-36  Score=225.44  Aligned_cols=105  Identities=46%  Similarity=0.880  Sum_probs=99.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchh
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWS   89 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~   89 (214)
                      ++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||.+|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999888999999998 99999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHHhhhhh
Q 044864           90 LIAGRLPGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        90 ~Ia~~lpgRt~~q~r~rw~~~l~~~~  115 (214)
                      .||..|||||++||++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998763

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=4.1e-36  Score=225.47  Aligned_cols=104  Identities=29%  Similarity=0.534  Sum_probs=100.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIA   92 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia   92 (214)
                      ||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhhhhhh
Q 044864           93 GRLPGRTANEVKNYWNSHLRRKLIN  117 (214)
Q Consensus        93 ~~lpgRt~~q~r~rw~~~l~~~~~~  117 (214)
                      ..|||||++||++||+.++++..++
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999887554

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=2.5e-35  Score=227.72  Aligned_cols=109  Identities=46%  Similarity=0.858  Sum_probs=102.6

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhC
Q 044864            6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLG   85 (214)
Q Consensus         6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G   85 (214)
                      .-+|++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus        20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence            346889999999999999999999999888999999998 9999999999999999999999999999999999999999


Q ss_pred             CchhhhcccCCCCCHHHHHHHHHHHhhhhh
Q 044864           86 NRWSLIAGRLPGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        86 ~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~  115 (214)
                      ++|+.||..|||||+++|++||+.++++++
T Consensus        99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999988753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=5.5e-35  Score=225.36  Aligned_cols=106  Identities=28%  Similarity=0.610  Sum_probs=101.4

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC
Q 044864            7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN   86 (214)
Q Consensus         7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~   86 (214)
                      .++..++|+||+|||++|+++|.+||. +|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467889999999999999999999997 7999999998 99999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           87 RWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        87 ~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      +|+.||..|||||+++|++||+.++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=9.3e-33  Score=220.57  Aligned_cols=108  Identities=44%  Similarity=0.845  Sum_probs=102.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC
Q 044864            7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN   86 (214)
Q Consensus         7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~   86 (214)
                      -.|++++|+||+|||++|+++|..||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            35889999999999999999999999878999999998 99999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCHHHHHHHHHHHhhhhh
Q 044864           87 RWSLIAGRLPGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        87 ~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~  115 (214)
                      +|+.||+.|||||+++|++||+.++++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999988753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=9.6e-34  Score=218.81  Aligned_cols=120  Identities=23%  Similarity=0.439  Sum_probs=94.4

Q ss_pred             ccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhhhhh
Q 044864           39 IPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRRKLIN  117 (214)
Q Consensus        39 Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~  117 (214)
                      ||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|..||..|||||+.||++||.++|.|.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788998 99999999999999999999999999999999999999995 7999999999999999999999999999999


Q ss_pred             CCCCccccccccCCCC-CCCCccccccccCCCCCCCCCCCCCc
Q 044864          118 MGIDPKNHRLHHSLPH-NSTGATSLGQQLVDMNEPAVKPRGDD  159 (214)
Q Consensus       118 ~~~~~~e~~~~~~~~~-~~~~~s~~~~~~~~~~~~~vkn~~~~  159 (214)
                      ++||++||..+..++. +|+.|+.|+..++||+++.|+||+..
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~  122 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS  122 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHT
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence            9999999998888876 89999999999999999999998644

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.88  E-value=6.7e-25  Score=163.53  Aligned_cols=97  Identities=23%  Similarity=0.433  Sum_probs=90.9

Q ss_pred             CCcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCccc
Q 044864           63 DLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATS  140 (214)
Q Consensus        63 ~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~  140 (214)
                      ++++++||+|||++|+++|..||. +|..||..|||||+.||++||.++|.|.+++++||++||..+..++. +|+.|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            367999999999999999999995 79999999999999999999999999999999999999998888766 8999999


Q ss_pred             cccccCCCCCCCCCCCCCc
Q 044864          141 LGQQLVDMNEPAVKPRGDD  159 (214)
Q Consensus       141 ~~~~~~~~~~~~vkn~~~~  159 (214)
                      |+..++||+++.|++|+..
T Consensus        81 Ia~~l~gRt~~~~k~rw~~   99 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNS   99 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHH
Confidence            9999999999999998643

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.88  E-value=1.4e-24  Score=167.02  Aligned_cols=100  Identities=17%  Similarity=0.302  Sum_probs=93.4

Q ss_pred             cCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCcc
Q 044864           61 RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGAT  139 (214)
Q Consensus        61 ~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s  139 (214)
                      .+..++++||+|||++|+++|..||.+|..||..|+|||+.||+.||.++|.+.+++++||++||..+..++. +|+.|+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999998888776 899999


Q ss_pred             ccccccCCCCCCCCCCCCCcc
Q 044864          140 SLGQQLVDMNEPAVKPRGDDI  160 (214)
Q Consensus       140 ~~~~~~~~~~~~~vkn~~~~~  160 (214)
                      .|+..++||+++.|++|+...
T Consensus        86 ~Ia~~l~gRt~~~~k~rw~~l  106 (126)
T 3osg_A           86 IIAKFFPGRTDIHIKNRWVTI  106 (126)
T ss_dssp             HHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHH
Confidence            999999999999999997543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=8.1e-24  Score=146.90  Aligned_cols=66  Identities=24%  Similarity=0.586  Sum_probs=63.7

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHH
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEE   74 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED   74 (214)
                      .+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4788999999999999999999999888999999999 99999999999999999999999999997

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.87  E-value=1.4e-24  Score=162.50  Aligned_cols=94  Identities=16%  Similarity=0.233  Sum_probs=88.7

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCcccccc
Q 044864           66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATSLGQ  143 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~~~~  143 (214)
                      +++||+|||++|+++|..|| .+|..||..|||||+.||+.||.++|.|.+++++||++||..+..++. +|+.|+.|+.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            57999999999999999999 489999999999999999999999999999999999999998888776 8999999999


Q ss_pred             ccCCCCCCCCCCCCCc
Q 044864          144 QLVDMNEPAVKPRGDD  159 (214)
Q Consensus       144 ~~~~~~~~~vkn~~~~  159 (214)
                      .++||+++.|++|+..
T Consensus        81 ~l~gRt~~~~k~rw~~   96 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMM   96 (107)
T ss_dssp             HHSSSCHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHH
Confidence            9999999999998643

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.87  E-value=4.1e-24  Score=165.43  Aligned_cols=96  Identities=21%  Similarity=0.362  Sum_probs=90.3

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCcccccc
Q 044864           66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATSLGQ  143 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~~~~  143 (214)
                      +|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.++++.||++||..+..++. +|+.|+.|+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            68999999999999999999 789999999999999999999999999999999999999998888776 8999999999


Q ss_pred             ccCCCCCCCCCCCCCccc
Q 044864          144 QLVDMNEPAVKPRGDDIY  161 (214)
Q Consensus       144 ~~~~~~~~~vkn~~~~~~  161 (214)
                      .++||+++.|++|+....
T Consensus        82 ~l~gRt~~~~k~rw~~~l   99 (131)
T 3zqc_A           82 LIPGRTDNAIKNRWNSSI   99 (131)
T ss_dssp             TSTTCCHHHHHHHHHHTT
T ss_pred             HcCCCCHHHHHHHHHHHH
Confidence            999999999999975433

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=6e-21  Score=132.36  Aligned_cols=65  Identities=22%  Similarity=0.347  Sum_probs=62.8

Q ss_pred             cCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCcccc
Q 044864           61 RPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNH  125 (214)
Q Consensus        61 ~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~  125 (214)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||++||++||+++|+|.+++++||++||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 8999999999999999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.78  E-value=1.2e-19  Score=151.55  Aligned_cols=106  Identities=21%  Similarity=0.313  Sum_probs=92.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCc-----cccccccccccccccccccchhhcccCCCc-----------------
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGC-----WRTIPQAAGLARCGKSCRLRWINYLRPDLK-----------------   65 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~-----------------   65 (214)
                      ...+++++||+|||++|+++|++||..+     |..||+.|+ |||+.||+.||.++|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3567899999999999999999998653     999999999 99999999999999999886                 


Q ss_pred             ------------CCCCChHHHHHHHHHHHh-h--------------------------------C---------------
Q 044864           66 ------------RGNFAEDEEDLIIKLHAL-L--------------------------------G---------------   85 (214)
Q Consensus        66 ------------~~~Wt~eED~~L~~lv~~-~--------------------------------G---------------   85 (214)
                                  +..||.+||-.|+..+.+ |                                |               
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999998876 1                                1               


Q ss_pred             ----------CchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           86 ----------NRWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        86 ----------~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                                ..|..||+.+|+||.+++|+||...|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                      16999999999999999999999888765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.76  E-value=1.5e-19  Score=137.41  Aligned_cols=82  Identities=22%  Similarity=0.397  Sum_probs=77.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccc----cccccccccccchhhccc-----CCCcCC-CCChHHHHHH
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAA----GLARCGKSCRLRWINYLR-----PDLKRG-NFAEDEEDLI   77 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~l~-----p~~~~~-~Wt~eED~~L   77 (214)
                      ++..++++||+|||+.|+++|++||.++|..|++.+    + +||+.+|++||.++|+     |.++++ +|+++|+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            467889999999999999999999998999999975    5 9999999999999998     999999 9999999999


Q ss_pred             HHHHHhhCCchhh
Q 044864           78 IKLHALLGNRWSL   90 (214)
Q Consensus        78 ~~lv~~~G~~W~~   90 (214)
                      +.++..+|++|+.
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999987

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.76  E-value=3e-19  Score=124.61  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=47.1

Q ss_pred             ccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHh
Q 044864           53 RLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHL  111 (214)
Q Consensus        53 r~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l  111 (214)
                      --||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 999999999998643

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=9.6e-19  Score=119.84  Aligned_cols=60  Identities=22%  Similarity=0.345  Sum_probs=57.6

Q ss_pred             cccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCC
Q 044864           59 YLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMG  119 (214)
Q Consensus        59 ~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~  119 (214)
                      +|+|.+++++||.|||++|+++|..||.+|..||. |+|||++||++||+++|++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999988765

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=2.6e-19  Score=120.39  Aligned_cols=57  Identities=23%  Similarity=0.571  Sum_probs=54.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCc
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLK   65 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~   65 (214)
                      .|++++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            4789999999999999999999999878999999998 99999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.75  E-value=2.7e-19  Score=116.98  Aligned_cols=52  Identities=44%  Similarity=0.861  Sum_probs=49.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD   63 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~   63 (214)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999888999999998 999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.75  E-value=1.4e-18  Score=121.11  Aligned_cols=66  Identities=23%  Similarity=0.331  Sum_probs=60.9

Q ss_pred             ccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccc
Q 044864           60 LRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHR  126 (214)
Q Consensus        60 l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~  126 (214)
                      ++|.+++++||+|||++|+++|.+||.+|..||.+|||||++||++||+.++++.++. ++++++..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s   68 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN   68 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence            5789999999999999999999999999999999999999999999999999998776 77776653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.74  E-value=4.4e-19  Score=115.90  Aligned_cols=52  Identities=29%  Similarity=0.691  Sum_probs=48.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD   63 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~   63 (214)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999878999999998 999999999999999984

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.73  E-value=1.5e-18  Score=132.05  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=72.3

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccc----cccccccccccchhhcc-----cCCCcCCCCChHH-HHHH
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAA----GLARCGKSCRLRWINYL-----RPDLKRGNFAEDE-EDLI   77 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~l-----~p~~~~~~Wt~eE-D~~L   77 (214)
                      +...++++||+|||+.|+++|++||.++|..|++.+    + +||+.||++||.+++     +|.++++.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            345679999999999999999999998999999864    5 999999999999998     8999999999999 8999


Q ss_pred             HHHHHhhCCc
Q 044864           78 IKLHALLGNR   87 (214)
Q Consensus        78 ~~lv~~~G~~   87 (214)
                      +.++..||+.
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999963

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=2.7e-18  Score=115.42  Aligned_cols=56  Identities=18%  Similarity=0.398  Sum_probs=52.7

Q ss_pred             cCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhh
Q 044864           61 RPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLI  116 (214)
Q Consensus        61 ~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~  116 (214)
                      +|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5788999999999999999999999 6999999999999999999999999998753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.72  E-value=1.8e-18  Score=119.52  Aligned_cols=63  Identities=25%  Similarity=0.408  Sum_probs=58.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccc-cccccccccchhhcccCCCcCCCCC
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGL-ARCGKSCRLRWINYLRPDLKRGNFA   70 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rs~~qcr~Rw~~~l~p~~~~~~Wt   70 (214)
                      ++..++++||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56678999999999999999999998889999999976 8999999999999999999887653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.70  E-value=1.1e-17  Score=109.21  Aligned_cols=50  Identities=28%  Similarity=0.560  Sum_probs=46.7

Q ss_pred             CcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           64 LKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        64 ~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      +++++||+|||++|+++|.+||. +|..||..|+|||++||++||+++|+|
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999996 999999999999999999999999987

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.70  E-value=1.5e-17  Score=114.90  Aligned_cols=61  Identities=23%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             ccCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhhhhhCCC
Q 044864           60 LRPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP--GRTANEVKNYWNSHLRRKLINMGI  120 (214)
Q Consensus        60 l~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRt~~q~r~rw~~~l~~~~~~~~~  120 (214)
                      ..+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||.++|++.+.+...
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            45677899999999999999999999 79999999999  999999999999999999887654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.70  E-value=1.5e-17  Score=108.65  Aligned_cols=50  Identities=36%  Similarity=0.748  Sum_probs=47.5

Q ss_pred             CcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           64 LKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        64 ~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      +++++||+|||++|+++|.+||. +|..||..|+|||++||++||.++|+|
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999996 799999999999999999999999986

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.68  E-value=1e-17  Score=112.63  Aligned_cols=54  Identities=17%  Similarity=0.524  Sum_probs=51.2

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864            9 QDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD   63 (214)
Q Consensus         9 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~   63 (214)
                      +.+.+++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            578999999999999999999999888999999999 999999999999999865

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.67  E-value=9.6e-18  Score=114.27  Aligned_cols=56  Identities=25%  Similarity=0.436  Sum_probs=49.5

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccc-cccccccccchhhcccCCCc
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGL-ARCGKSCRLRWINYLRPDLK   65 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rs~~qcr~Rw~~~l~p~~~   65 (214)
                      ..+|++||+|||++|+++|.+||.++|..||+.+++ +|++.||++||.++++|+++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            357899999999999999999999899999997542 89999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.65  E-value=1.1e-16  Score=107.59  Aligned_cols=53  Identities=13%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             cCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           61 RPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        61 ~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      .+.+.+++||+|||++|+++|..|| ++|..||..|+|||++||++||.++|.+
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3568899999999999999999999 8999999999999999999999999865

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.64  E-value=1.5e-16  Score=104.30  Aligned_cols=49  Identities=22%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             cCCCCChHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP--GRTANEVKNYWNSHLRR  113 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRt~~q~r~rw~~~l~~  113 (214)
                      ++++||+|||++|+++|..|| ++|..||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999999864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.63  E-value=2e-16  Score=107.69  Aligned_cols=52  Identities=23%  Similarity=0.448  Sum_probs=47.5

Q ss_pred             CcCCCCChHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhhh
Q 044864           64 LKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP--GRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        64 ~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRt~~q~r~rw~~~l~~~~  115 (214)
                      .++++||+|||++|+++|.+|| ++|..||..++  |||+.||++||.+++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4688999999999999999999 69999999865  9999999999999998765

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=4.2e-17  Score=114.31  Aligned_cols=61  Identities=21%  Similarity=0.335  Sum_probs=56.2

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CccccccccccccccccccccchhhcccCCCcCCC
Q 044864            7 DKQDTNKGAWSKQEDQKLIDYIRKHGE-----GCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGN   68 (214)
Q Consensus         7 ~k~~~~kg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~   68 (214)
                      .+|+++++.||+|||++|+++|.+||.     ++|..||++|+ +||..||+.||.+||.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            378999999999999999999999996     67999999999 99999999999999998777664

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.63  E-value=5.2e-17  Score=106.48  Aligned_cols=50  Identities=30%  Similarity=0.505  Sum_probs=46.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCccccccccccc-cccccccccchhhccc
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGL-ARCGKSCRLRWINYLR   61 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rs~~qcr~Rw~~~l~   61 (214)
                      ++|+||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998889999999976 6999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.4e-16  Score=110.41  Aligned_cols=59  Identities=19%  Similarity=0.146  Sum_probs=54.3

Q ss_pred             cCCCcCCCCChHHHHHHHHHHHhhC------CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCC
Q 044864           61 RPDLKRGNFAEDEEDLIIKLHALLG------NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMG  119 (214)
Q Consensus        61 ~p~~~~~~Wt~eED~~L~~lv~~~G------~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~  119 (214)
                      +|.+.+++||.|||++|+++|..||      .+|..||..|+|||++||++||+++|.+.++.+-
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            4788899999999999999999999      7899999999999999999999999998766543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.7e-17  Score=112.53  Aligned_cols=59  Identities=24%  Similarity=0.424  Sum_probs=53.6

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCC
Q 044864            7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGN   68 (214)
Q Consensus         7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~   68 (214)
                      -.|.+++++||+|||++|+++|..||. +|..||+ ++ +|++.||+.||.++|+|.++++.
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            368899999999999999999999997 6999999 77 89999999999999998876653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.62  E-value=1.1e-16  Score=106.98  Aligned_cols=51  Identities=27%  Similarity=0.496  Sum_probs=47.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL   60 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l   60 (214)
                      .+.+++||+|||++|+++|.+||.++|..||+.|+.+|++.||++||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            466899999999999999999998899999999976899999999999875

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.60  E-value=1e-15  Score=127.84  Aligned_cols=89  Identities=15%  Similarity=0.260  Sum_probs=74.5

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhCCc------hhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCCCC
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLGNR------WSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNS  135 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G~~------W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~~~  135 (214)
                      +.+++++||+|||++|+++|.+||+.      |..||+.|||||++|||+||+.+|++.+... |+.+++..+..... |
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-G   81 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-G   81 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT-S
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC-C
Confidence            35678899999999999999999975      9999999999999999999999999998854 99999887777665 7


Q ss_pred             CCccccccccCCCCCCCCCCCCC
Q 044864          136 TGATSLGQQLVDMNEPAVKPRGD  158 (214)
Q Consensus       136 ~~~s~~~~~~~~~~~~~vkn~~~  158 (214)
                      + |..++ .|++    .||++..
T Consensus        82 n-~ikis-~lp~----siK~rft   98 (246)
T 1ign_A           82 N-LIKTK-VLPP----SIKRKFS   98 (246)
T ss_dssp             C-BCEES-SCCC----CSCCCCC
T ss_pred             C-ceeee-ccCc----cccCccc
Confidence            7 98888 5554    7778754

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.59  E-value=1e-15  Score=102.19  Aligned_cols=50  Identities=28%  Similarity=0.390  Sum_probs=46.4

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCC-CCCHHHHHHHHHHHh
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP-GRTANEVKNYWNSHL  111 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRt~~q~r~rw~~~l  111 (214)
                      ..+.+++||+|||.+|+++|.+|| ++|..||..|+ |||++||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346688999999999999999999 89999999999 999999999998875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.57  E-value=3.2e-16  Score=109.05  Aligned_cols=58  Identities=17%  Similarity=0.303  Sum_probs=53.4

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcC
Q 044864            7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKR   66 (214)
Q Consensus         7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~   66 (214)
                      ..|.+++|+||+|||++|+++|..||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999997 6999999999 999999999999999876665

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.33  E-value=2.9e-16  Score=113.64  Aligned_cols=56  Identities=25%  Similarity=0.302  Sum_probs=53.2

Q ss_pred             cccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           59 YLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        59 ~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      .++|.+.+++||.|||++|+++|..||.+|..||..|+|||++||++||+++|++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56788999999999999999999999999999999999999999999999998875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.54  E-value=3.3e-16  Score=118.97  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             ccCCCcCCCCChHHHHHHHHHHHhhCC-chhhhccc----CCCCCHHHHHHHHHHHhh-----hhhhhC-CCCccccccc
Q 044864           60 LRPDLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGR----LPGRTANEVKNYWNSHLR-----RKLINM-GIDPKNHRLH  128 (214)
Q Consensus        60 l~p~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRt~~q~r~rw~~~l~-----~~~~~~-~~~~~e~~~~  128 (214)
                      +.+..++++||.|||+.|+++|.+||. +|+.|+..    |+|||+.+|++||.++++     +.++++ .|+++++..+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            456678999999999999999999995 99999998    499999999999999999     777776 6667666666


Q ss_pred             cCCCC-CCCCccc
Q 044864          129 HSLPH-NSTGATS  140 (214)
Q Consensus       129 ~~~~~-~~~~~s~  140 (214)
                      ..++. .|++|+.
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            66655 7887776

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.53  E-value=5e-15  Score=105.65  Aligned_cols=69  Identities=25%  Similarity=0.467  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcccccccc----ccccccccccccchhhcc-----cCCCcCC-CCChHHHHHHHHHHHh
Q 044864           14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQA----AGLARCGKSCRLRWINYL-----RPDLKRG-NFAEDEEDLIIKLHAL   83 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rs~~qcr~Rw~~~l-----~p~~~~~-~Wt~eED~~L~~lv~~   83 (214)
                      ++||+|||+.|+++|++||.++|..|++.    |+ +||+.+|++||.+++     +|.++++ +...+...+++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999985    77 999999999999987     6776665 6777777888888764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.52  E-value=5.5e-15  Score=109.69  Aligned_cols=77  Identities=22%  Similarity=0.373  Sum_probs=67.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccc----cccccccccccchhhcc-----cCCCcCCCCChHHHHH-H
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAA----GLARCGKSCRLRWINYL-----RPDLKRGNFAEDEEDL-I   77 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~l-----~p~~~~~~Wt~eED~~-L   77 (214)
                      ++..++++||+|||+.|+++|++||.++|..|++.+    + +||..+|++||.+++     +|.++++.-++.|-.. +
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            467889999999999999999999998999999965    5 999999999999998     6899999888777664 8


Q ss_pred             HHHHHhhC
Q 044864           78 IKLHALLG   85 (214)
Q Consensus        78 ~~lv~~~G   85 (214)
                      ++|+..+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887766

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.49  E-value=8.3e-15  Score=103.65  Aligned_cols=52  Identities=19%  Similarity=0.463  Sum_probs=48.9

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864            6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus         6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      +.+....++.||+|||++|+++|.+|| ++|..||++|+ +||..||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            466778899999999999999999999 78999999999 99999999999997

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.48  E-value=4.5e-14  Score=98.35  Aligned_cols=51  Identities=10%  Similarity=0.231  Sum_probs=47.0

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      +...+++||.+||.+|++++..||    .+|..||.+|||||.+||++||+.++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999    689999999999999999999998765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-14  Score=101.21  Aligned_cols=56  Identities=25%  Similarity=0.373  Sum_probs=47.5

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCc
Q 044864            6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLK   65 (214)
Q Consensus         6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~   65 (214)
                      .-.|++++|+||+|||++|+++|.+||.+ |..||+.|  |||+.||+.||.. |....+
T Consensus        16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           16 FQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             ---CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence            45689999999999999999999999976 99999999  7999999999985 444433

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.46  E-value=8.6e-15  Score=111.29  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=60.3

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhC-Cchhhhccc----CCCCCHHHHHHHHHHHh-----hhhhhhCCCCccc-cccccC
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGR----LPGRTANEVKNYWNSHL-----RRKLINMGIDPKN-HRLHHS  130 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~----lpgRt~~q~r~rw~~~l-----~~~~~~~~~~~~e-~~~~~~  130 (214)
                      ...++++||.|||+.|+++|.+|| ++|+.|+..    |+|||+.+|++||.+++     .+.++++.|+++| +..+..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~  106 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA  106 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence            345688999999999999999999 599999986    48999999999999999     5788888889888 454444


Q ss_pred             CC
Q 044864          131 LP  132 (214)
Q Consensus       131 ~~  132 (214)
                      ++
T Consensus       107 ~h  108 (122)
T 2roh_A          107 AQ  108 (122)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=2.9e-14  Score=99.28  Aligned_cols=56  Identities=13%  Similarity=0.402  Sum_probs=50.6

Q ss_pred             ccCCCCCCcCCCCHHHHHHHHHHHHHhCC---Cccccccccccccccccccccchhhccc
Q 044864            5 CCDKQDTNKGAWSKQEDQKLIDYIRKHGE---GCWRTIPQAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus         5 ~~~k~~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      --+++...++.||+|||++|+.++..||.   .+|..||++|| |||..||+.||.+++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34678889999999999999999999993   47999999999 9999999999998764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.42  E-value=6.9e-14  Score=98.91  Aligned_cols=48  Identities=15%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             CCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 044864           63 DLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSH  110 (214)
Q Consensus        63 ~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~  110 (214)
                      ...+++||.|||.+|+++|.+||++|..||.+|++||+.||+.||.++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999999999765

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.13  E-value=1.6e-14  Score=104.50  Aligned_cols=53  Identities=19%  Similarity=0.477  Sum_probs=49.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccC
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRP   62 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p   62 (214)
                      -+.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|..
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            47789999999999999999999997 6999999999 99999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.38  E-value=3.9e-13  Score=95.82  Aligned_cols=48  Identities=23%  Similarity=0.436  Sum_probs=44.1

Q ss_pred             CCCChHHHHHHHHHHHhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhh
Q 044864           67 GNFAEDEEDLIIKLHALLGN-RWSLIAGR----LPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        67 ~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRt~~q~r~rw~~~l~~~  114 (214)
                      ++||+|||+.|+++|.+||. +|+.|++.    |+|||+++|++||.++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999995 99999985    89999999999999999643

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.38  E-value=6.4e-13  Score=98.55  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhCC-chhhhcccC----CCCCHHHHHHHHHHHhh-----hhhhhCCCCcc
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRL----PGRTANEVKNYWNSHLR-----RKLINMGIDPK  123 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~l----pgRt~~q~r~rw~~~l~-----~~~~~~~~~~~  123 (214)
                      +..++++||.|||+.|+++|.+||. +|+.|+..+    +|||+.+|++||.++++     +.++++.-.|.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~   80 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQ   80 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCH
Confidence            4567899999999999999999995 999999965    89999999999999996     44444443333

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.33  E-value=1.8e-12  Score=86.74  Aligned_cols=49  Identities=20%  Similarity=0.398  Sum_probs=45.7

Q ss_pred             cCCCCChHHHHHHHHHHHhhCCchhhhc---ccCCCCCHHHHHHHHHHHhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLGNRWSLIA---GRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia---~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      ++.+||+|||+.|+++|.+||.+|..|+   .++++||...+++||.++.+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   678999999999999988764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.26  E-value=5.1e-12  Score=91.84  Aligned_cols=50  Identities=22%  Similarity=0.386  Sum_probs=45.6

Q ss_pred             cCCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      .+++||.|||.+|++++..||    .+|..||..|||||.+||++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    68999999999999999999999988664

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.14  E-value=5.8e-11  Score=85.96  Aligned_cols=67  Identities=15%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             ccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccC-----CCCCHHHHHHHHHHHhhhhhhhCC
Q 044864           49 GKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRL-----PGRTANEVKNYWNSHLRRKLINMG  119 (214)
Q Consensus        49 ~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~l-----pgRt~~q~r~rw~~~l~~~~~~~~  119 (214)
                      ..=+.++|.++|.+    .+||.||++.|++|+.+||.+|..|+..+     ++||..++|+||+.+.+..+...+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35567899999976    79999999999999999999999999998     589999999999999998877664

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.13  E-value=7.8e-12  Score=90.86  Aligned_cols=47  Identities=13%  Similarity=0.299  Sum_probs=43.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCccccccccccccccccccccchhhcc
Q 044864           13 KGAWSKQEDQKLIDYIRKHG---EGCWRTIPQAAGLARCGKSCRLRWINYL   60 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l   60 (214)
                      ++.||+|||++|+.++..||   ...|..||+.|| |||..||+.||.+++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            78999999999999999997   356999999999 999999999999864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.4e-10  Score=77.85  Aligned_cols=48  Identities=13%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             cCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      ...+||++|+.++++++..||.+|..||..||+||..||..+|+...+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            356999999999999999999999999999999999999999976543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.96  E-value=1.7e-10  Score=77.17  Aligned_cols=49  Identities=14%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCcccccc---ccccccccccccccchhhccc
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIP---QAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia---~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      .++.+||+|||+.|++.|++||. .|..|+   .++. +|+...+.+||.+...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            46899999999999999999997 799999   4666 9999999999998654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=2.6e-10  Score=76.48  Aligned_cols=52  Identities=13%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864            6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus         6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      .++.....+.||+||++++++++.+|| .+|..||..|+ +|+..||..+|...
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            345556789999999999999999999 57999999999 99999999998754

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.92  E-value=1.1e-09  Score=75.87  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=44.8

Q ss_pred             CCcCCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           63 DLKRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        63 ~~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      ..+.+.||.|||.+|.+++..|+    .+|..||..| |||.++|++||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34577999999999999999997    6799999998 99999999999887655

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.76  E-value=4.9e-09  Score=86.85  Aligned_cols=49  Identities=18%  Similarity=0.333  Sum_probs=46.1

Q ss_pred             cCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      ..++||+||+.++++++..||.+|..||+.|++||..||+++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3569999999999999999999999999999999999999999988766

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.71  E-value=2.7e-09  Score=73.85  Aligned_cols=51  Identities=14%  Similarity=0.276  Sum_probs=44.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC---CccccccccccccccccccccchhhcccC
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGE---GCWRTIPQAAGLARCGKSCRLRWINYLRP   62 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p   62 (214)
                      ....+.||.|||++|.+++.+|+.   +.|..||+++  ||+..+|+.||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence            456789999999999999999983   4699999997  59999999999876543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.67  E-value=5e-09  Score=69.75  Aligned_cols=48  Identities=19%  Similarity=0.526  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCccccccc-cccccccccccccchhhccc
Q 044864           13 KGAWSKQEDQKLIDYIRKH--------GEGCWRTIPQ-AAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      +.+||+|||+.|+++|..|        |..-|..+++ .++ .+|..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        5556999999 787 9999999999998874

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.64  E-value=3.3e-08  Score=68.38  Aligned_cols=47  Identities=21%  Similarity=0.278  Sum_probs=42.7

Q ss_pred             CCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      ...||.+|+.+|..+...|+    .+|..||..|||||..+|+.||..+++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45899999999999999998    479999999999999999999987744

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.62  E-value=1.8e-08  Score=92.16  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=43.2

Q ss_pred             CCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           67 GNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        67 ~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      ..||.+|-.++++++.+||.+|..||..|..||..||+++|..+.++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999765544

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.60  E-value=1e-08  Score=70.95  Aligned_cols=49  Identities=24%  Similarity=0.514  Sum_probs=43.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CccccccccccccccccccccchhhcccC
Q 044864           13 KGAWSKQEDQKLIDYIRKHGE---GCWRTIPQAAGLARCGKSCRLRWINYLRP   62 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p   62 (214)
                      ...||.+|+++|..++..|+.   ++|..||..|| +|+..+|+.||..++.-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            468999999999999999975   57999999999 99999999999977543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.58  E-value=5.7e-08  Score=64.60  Aligned_cols=47  Identities=23%  Similarity=0.400  Sum_probs=42.2

Q ss_pred             CCCCChHHHHHHHHHHHhh--------CC-chhhhcc-cCCCCCHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALL--------GN-RWSLIAG-RLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~--------G~-~W~~Ia~-~lpgRt~~q~r~rw~~~l~  112 (214)
                      +.+||+|||..|++.|..|        |+ -|..++. .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        42 3999999 7999999999999998774

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.50  E-value=3.7e-08  Score=81.60  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=46.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhccc
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      ......++||+||++++++++.+|| ++|..||+.|+ +||..||+.+|+++..
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3345578999999999999999999 56999999999 9999999999998754

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.28  E-value=1e-06  Score=76.43  Aligned_cols=100  Identities=19%  Similarity=0.243  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc---------------------------------
Q 044864           14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL---------------------------------   60 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l---------------------------------   60 (214)
                      +.||..|...++.++.+||..+|..||..|+ +++...++. |..++                                 
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~-Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIE-YNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHH-HHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHH-HHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999998 898877643 22110                                 


Q ss_pred             ------------------cCCCcCCCCChHHHHHHHHHHHhhC----Cchhhhcc------------cCCCCCHHHHHHH
Q 044864           61 ------------------RPDLKRGNFAEDEEDLIIKLHALLG----NRWSLIAG------------RLPGRTANEVKNY  106 (214)
Q Consensus        61 ------------------~p~~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~------------~lpgRt~~q~r~r  106 (214)
                                        -+..+...||++||..|+-++.+||    +.|..|..            ++..||+.+|..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                              0112345899999999999999999    57999952            3467999999999


Q ss_pred             HHHHhhhhh
Q 044864          107 WNSHLRRKL  115 (214)
Q Consensus       107 w~~~l~~~~  115 (214)
                      ...+++-..
T Consensus       269 c~tLi~~ie  277 (304)
T 1ofc_X          269 CNTLITLIE  277 (304)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=2.2e-06  Score=57.53  Aligned_cols=48  Identities=19%  Similarity=0.244  Sum_probs=44.0

Q ss_pred             CCCcCCCCChHHHHHHHHHHHhhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 044864           62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAG-RLPGRTANEVKNYWNS  109 (214)
Q Consensus        62 p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~-~lpgRt~~q~r~rw~~  109 (214)
                      |.+....||+||-.+..+.+..||.+|..|++ .|++||..+|...|+.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            56777899999999999999999999999999 5899999999988864

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.18  E-value=4.7e-07  Score=62.27  Aligned_cols=43  Identities=23%  Similarity=0.328  Sum_probs=38.3

Q ss_pred             CCCCChHHHHHHHHHHHhhCC----chhhhcccCCCCCHHHHHHHHH
Q 044864           66 RGNFAEDEEDLIIKLHALLGN----RWSLIAGRLPGRTANEVKNYWN  108 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~----~W~~Ia~~lpgRt~~q~r~rw~  108 (214)
                      .+.||.+|+.+|..+...|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999983    7999999999999999998873

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.18  E-value=2.9e-07  Score=63.27  Aligned_cols=44  Identities=11%  Similarity=0.242  Sum_probs=39.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---ccccccccccccccccccccchh
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEG---CWRTIPQAAGLARCGKSCRLRWI   57 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rs~~qcr~Rw~   57 (214)
                      .+.||.+|+++|..++..|+.+   .|.+||+.|| ||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4589999999999999999754   6999999999 999999999985

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.15  E-value=4.2e-06  Score=60.21  Aligned_cols=61  Identities=16%  Similarity=0.264  Sum_probs=52.0

Q ss_pred             chhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCC-----CCCHHHHHHHHHHHhhhhhhhCC
Q 044864           55 RWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLP-----GRTANEVKNYWNSHLRRKLINMG  119 (214)
Q Consensus        55 Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lp-----gRt~~q~r~rw~~~l~~~~~~~~  119 (214)
                      .|..+|.    ...||.||.+.|++|+..|+-+|..|+..+.     +||..++|+||+.+.++.+...+
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            4555554    3589999999999999999999999998863     79999999999999998876554

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.08  E-value=5.7e-06  Score=58.92  Aligned_cols=48  Identities=17%  Similarity=0.293  Sum_probs=43.9

Q ss_pred             CCCChHHHHHHHHHHHhhCC---chhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           67 GNFAEDEEDLIIKLHALLGN---RWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        67 ~~Wt~eED~~L~~lv~~~G~---~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      -.||.|||..||...++-|.   .|..||..|.+|+.+||++||+.+++-.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            37999999999999999985   8999999999999999999999888654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.30  E-value=6.1e-07  Score=60.59  Aligned_cols=45  Identities=13%  Similarity=0.350  Sum_probs=41.6

Q ss_pred             CCChHHHHHHHHHHHhhCC---chhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           68 NFAEDEEDLIIKLHALLGN---RWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G~---~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      .||.|||..|+..+.+-|.   .|..||..| +||++||.+||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999996   799999999 99999999999887753

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=5.4e-06  Score=55.60  Aligned_cols=49  Identities=10%  Similarity=0.173  Sum_probs=43.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccc-cccccccccccccchhh
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQ-AAGLARCGKSCRLRWIN   58 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~   58 (214)
                      .|.+....||+||-++..+++.+||. +|..|++ .|+ +|+..||..-|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            46777899999999999999999995 6999998 588 9999999887754

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.82  E-value=2.3e-05  Score=56.67  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=41.5

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSH  110 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~  110 (214)
                      ...||++|.++..+....||.+|..||..||+||..+|-..|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            458999999999999999999999999999999999999988643

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.79  E-value=3.1e-05  Score=52.94  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=40.6

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAG-RLPGRTANEVKNYWNS  109 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~-~lpgRt~~q~r~rw~~  109 (214)
                      ...||++|-.+..+.+..||.+|..|++ .|++||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999998873

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.74  E-value=9.9e-06  Score=74.07  Aligned_cols=48  Identities=21%  Similarity=0.420  Sum_probs=43.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      .....+||.||-+++++++.+|| .+|..||+.|+ +|+..||+..|.++
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34578999999999999999999 57999999999 99999999998765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.64  E-value=1.4e-05  Score=57.57  Aligned_cols=50  Identities=20%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCcccccccccc----ccccccccccchhhccc
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAG----LARCGKSCRLRWINYLR   61 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rs~~qcr~Rw~~~l~   61 (214)
                      +..+.||.||+..|++++++|+.. |..|+..+.    .+||..++++||..+..
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999976 999999882    27999999999987643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.46  E-value=3.6e-05  Score=55.60  Aligned_cols=44  Identities=18%  Similarity=0.295  Sum_probs=39.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhh
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWIN   58 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~   58 (214)
                      ...||+||-+++.+++..|| ++|..|++.++ +|+..+|.+-|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence            36899999999999999999 56999999999 9999999987753

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.38  E-value=5.6e-05  Score=51.66  Aligned_cols=45  Identities=18%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCccccccc-cccccccccccccchhh
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQ-AAGLARCGKSCRLRWIN   58 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~   58 (214)
                      ....||+||-++..+++.+||. +|..|++ .|+ +|+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            3568999999999999999995 6999999 588 9999999987763

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.37  E-value=0.00014  Score=51.24  Aligned_cols=49  Identities=16%  Similarity=0.406  Sum_probs=41.7

Q ss_pred             CCCCChHHHHHHHHHHHhhC----------CchhhhcccC----CCCCHHHHHHHHHHHhhhh
Q 044864           66 RGNFAEDEEDLIIKLHALLG----------NRWSLIAGRL----PGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G----------~~W~~Ia~~l----pgRt~~q~r~rw~~~l~~~  114 (214)
                      ...||.+|...||++...+.          ..|..||..|    -.||+.||+.+|.++.+..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            46899999999999987632          2599999987    3799999999999988876

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.19  E-value=4.5e-05  Score=53.94  Aligned_cols=49  Identities=27%  Similarity=0.580  Sum_probs=40.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC---------Cccccccccc---cccccccccccchhhcc
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGE---------GCWRTIPQAA---GLARCGKSCRLRWINYL   60 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~---~~~Rs~~qcr~Rw~~~l   60 (214)
                      +...||.+|...|+++...+..         .-|..||..|   |..|++.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4679999999999999876421         1599999976   34799999999998864

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.24  E-value=6.1e-05  Score=50.81  Aligned_cols=46  Identities=11%  Similarity=0.293  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--Cccccccccccccccccccccchhhccc
Q 044864           14 GAWSKQEDQKLIDYIRKHGE--GCWRTIPQAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      -.||.|||..++..+++.|.  .-|..||+.+  +|++.|+..||..++.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            47999999999999999986  2499999888  5999999999987543

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.07  E-value=0.00072  Score=59.95  Aligned_cols=100  Identities=20%  Similarity=0.334  Sum_probs=76.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc-------c-------------------------
Q 044864           14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL-------R-------------------------   61 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l-------~-------------------------   61 (214)
                      +.||.-|=..++.++.+||..+-..||..|+.+++...++ +|..++       .                         
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999985357766554 232211       0                         


Q ss_pred             --------------------CC-CcCCCCChHHHHHHHHHHHhhC----Cchhhhccc------------CCCCCHHHHH
Q 044864           62 --------------------PD-LKRGNFAEDEEDLIIKLHALLG----NRWSLIAGR------------LPGRTANEVK  104 (214)
Q Consensus        62 --------------------p~-~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~------------lpgRt~~q~r  104 (214)
                                          +. .+...||++||..||-++.+||    +.|..|-..            +..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                                00 0345799999999999999999    579998322            3679999999


Q ss_pred             HHHHHHhhhh
Q 044864          105 NYWNSHLRRK  114 (214)
Q Consensus       105 ~rw~~~l~~~  114 (214)
                      .|...+|+-.
T Consensus       283 rRc~tLi~~I  292 (374)
T 2y9y_A          283 RRGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.02  E-value=0.00022  Score=50.81  Aligned_cols=45  Identities=16%  Similarity=0.388  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--Cccccccccccccccccccccchhhc
Q 044864           14 GAWSKQEDQKLIDYIRKHGE--GCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      -.||.|||..++...++.|.  .-|..||+.++ +|+..|+.+||+.+
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            37999999999999999985  35999999998 99999999999864

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.89  E-value=0.00058  Score=55.62  Aligned_cols=45  Identities=13%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             CCChHHHHHHHHHHHhhC-Cchhhhcc--cC----------CC--CCHHHHHHHHHHHhh
Q 044864           68 NFAEDEEDLIIKLHALLG-NRWSLIAG--RL----------PG--RTANEVKNYWNSHLR  112 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~--~l----------pg--Rt~~q~r~rw~~~l~  112 (214)
                      .||.+||..|+-.+.+|| ++|..|..  .+          ..  ++...+..|...+|+
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            599999999999999999 99999843  11          12  456678888766655

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.54  E-value=0.002  Score=52.37  Aligned_cols=40  Identities=30%  Similarity=0.547  Sum_probs=34.2

Q ss_pred             CCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccc
Q 044864            2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQ   41 (214)
Q Consensus         2 r~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~   41 (214)
                      +-|++.++......||.+||..|+..|.+||.++|..|-.
T Consensus       123 ~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          123 TIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            4566777766677899999999999999999999999965

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.39  E-value=0.0058  Score=43.77  Aligned_cols=49  Identities=20%  Similarity=0.322  Sum_probs=40.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCcccccccccc----ccccccccccchhhcc
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAG----LARCGKSCRLRWINYL   60 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rs~~qcr~Rw~~~l   60 (214)
                      ++...||.||...|.+++++|... |--|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            445789999999999999999966 999987663    2689999999998764

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=94.92  E-value=0.022  Score=48.46  Aligned_cols=29  Identities=38%  Similarity=0.719  Sum_probs=26.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQ   41 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~   41 (214)
                      ...|+.+||..|+..|.+||.|+|..|-.
T Consensus       168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          168 SSNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            35799999999999999999999999954

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.47  E-value=0.066  Score=46.22  Aligned_cols=46  Identities=22%  Similarity=0.273  Sum_probs=40.6

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHh
Q 044864           66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHL  111 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l  111 (214)
                      -+.||..+...++.++.+|| .+|..||..|+|+|..+|+.++....
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw  156 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW  156 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            45799999999999999999 68999999999999999987765443

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.11  E-value=0.1  Score=34.74  Aligned_cols=47  Identities=13%  Similarity=0.040  Sum_probs=39.6

Q ss_pred             cCCCCChHHHHHHHHHHHhhCCc---hhhhcccC--CCCCHHHHHHHHHHHh
Q 044864           65 KRGNFAEDEEDLIIKLHALLGNR---WSLIAGRL--PGRTANEVKNYWNSHL  111 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G~~---W~~Ia~~l--pgRt~~q~r~rw~~~l  111 (214)
                      .+-.||+|.-+..+++|..+|..   +..|-+.|  +|.|..+|+.+.+.+.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999954   77887775  7999999998876554

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.52  E-value=0.17  Score=42.97  Aligned_cols=26  Identities=19%  Similarity=0.461  Sum_probs=24.1

Q ss_pred             CCChHHHHHHHHHHHhhC-Cchhhhcc
Q 044864           68 NFAEDEEDLIIKLHALLG-NRWSLIAG   93 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~   93 (214)
                      .|+.+||..|+-.|.+|| ++|..|..
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            599999999999999999 99999953

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=88.74  E-value=0.23  Score=32.96  Aligned_cols=49  Identities=8%  Similarity=0.169  Sum_probs=35.5

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCC--ccccccccccc-cccccccccchhhc
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEG--CWRTIPQAAGL-ARCGKSCRLRWINY   59 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rs~~qcr~Rw~~~   59 (214)
                      ..+-.||+|.-++.+++|...|..  -++.|.+.|+. +.|..++..+.+.|
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            457799999999999999999943  15677776652 55666666554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-18
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-08
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	6e-11
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	5e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-13
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-05
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-13
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-04
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	6e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-07
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (182), Expect = 1e-18
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
           KG W+K+EDQ+LI  ++K+G   W  I +     R GK CR RW N+L P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (123), Expect = 5e-10
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 64  LKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR 112
           L +G + ++E+  +IKL    G  RWS+IA  L GR   + +  W++HL 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.9 bits (179), Expect = 3e-18
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63
          K  W+++ED+KL   + ++G   W+ I       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (108), Expect = 6e-08
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 66  RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR 112
           +  +  +E++ + KL    G + W +IA  LP RT  + ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.4 bits (159), Expect = 5e-15
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEG-----CWRTIPQAAGLARCGKSCRLRWINYLRPDLKRG 67
          K +++ +ED+ ++D +RK+         +  I         G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 68 NFAEDEEDLIIKLHA 82
             +    L+     
Sbjct: 60 YEVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (131), Expect = 6e-11
 Identities = 12/68 (17%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 66  RGNFAEDEEDLIIKLHALLGNR------WSLIAGRLPGRTANEVKNYWNSHLRRKLINMG 119
           + +F ++E++ I+ +      R      +  I+  +P  T N +++ +  +L ++L  + 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 120 IDPKNHRL 127
              K  +L
Sbjct: 61  EVDKFGKL 68

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 65.5 bits (159), Expect = 5e-15
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAA---GLARCGKSCRLRWINYLRPDLKRGN--- 68
           +S  E + L++ +   G G WR +   A      R     + +W   +           
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 69 ---FAEDEEDLIIKLHALLGNR 87
               +D  D ++  HA    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 1e-13
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA-RCGKSCRLRWINYLRPDL 64
          K  W+ +E + +   ++K+GEG W  I +      R     + RW    R  +
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 6e-05
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 65  KRGNFAEDEEDLIIKLHALLG-NRWSLIA--GRLPGRTANEVKNYWNSHLRRKL 115
           K+  +  +E + +       G   W+ I+       RTA  +K+ W +  R  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA-RCGKSCRLRWINYLR 61
          + AW  +ED+ L   +RK+GEG W  I        R     + RW    +
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 5e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 65  KRGNFAEDEEDLIIKLHALLGN-RWSLIA--GRLPGRTANEVKNYWNSHLR 112
           KR  +  +E+  +       G   WS I    +   RT+  +K+ W +  +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 6e-13
 Identities = 23/47 (48%), Positives = 34/47 (72%)

Query: 66  RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR 112
           + ++ E+E+ +I + H  LGNRW+ IA  LPGRT N +KN+WNS +R
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (120), Expect = 1e-09
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
          K +W+++ED+ +    ++ G           G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 2e-11
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 16 WSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEE 74
          W+ +E +     + K G   W  I +  G +R     +     Y +  +K G   E   
Sbjct: 5  WTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 69  FAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115
           +  +E++L  +  A  G RW+ I+  +  RT  +VK+Y   + + K+
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 8e-11
 Identities = 9/49 (18%), Positives = 18/49 (36%)

Query: 65  KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113
               ++E E++   +        + LIA  L  +T  E   Y+    + 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 8e-11
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 65  KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113
               +  +E+ L ++     G  +  I+  +  ++  +VKN++ ++ RR
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 3e-07
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61
             W+ +E    +  IRK+G   ++ I    G  +     +  ++NY R
Sbjct: 5  NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 3e-10
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 16 WSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY 59
          W+ QE+  L++ +   G G W+ +       +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 5e-09
 Identities = 6/52 (11%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7  DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA--RCGKSCRLRW 56
          ++  + +  W++ + + L   ++++  G      + A     +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 4e-06
 Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 61  RPDLKRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYW 107
           R       + ++++ L+            + W  IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 16 WSKQEDQKLIDYIRKHGEGCWRTIPQAAGLA--RCGKSCRLRWINYLRPDLKR 66
          WS +E++     +  + +         A     R  +  +  +   L  D+K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 71  EDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLRR-KLINMGIDP 122
             E     +  A+      +RW+ +A  + GRT  EVK ++   +   K I  G  P
Sbjct: 6   AKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 62

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 38  TIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNR---WSLIAGR 94
            +P+A+    C                K   +  + + +I+ +    G +   +S+I+ +
Sbjct: 10  ALPKASEATVCAN-----NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ 64

Query: 95  LPGRTANEVKNYWNSHLRR 113
           L  +T  EV + +   ++ 
Sbjct: 65  LGNKTPVEVSHRFRELMQL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.79
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.79
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.78
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.76
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.74
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.73
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.66
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.63
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.58
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.57
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.57
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.56
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.53
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.51
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.47
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.45
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.44
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.43
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.38
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.36
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.32
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.24
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.23
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.1
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.9
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.28
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.27
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.15
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.98
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.51
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.85
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.33
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.31
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.59
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.13
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	93.62
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.3
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.57
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	84.49

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=8.1e-21  Score=122.80  Aligned_cols=52  Identities=44%  Similarity=0.861  Sum_probs=49.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864           11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD   63 (214)
Q Consensus        11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~   63 (214)
                      ++||+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3.5e-22  Score=142.11  Aligned_cols=70  Identities=21%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----ccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHh
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEG-----CWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHAL   83 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~-----~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~   83 (214)
                      |+.||+|||++|+++|.+||..     +|..||+.|+ |||+.||++||.++|+|.++++.||.+||.+|+..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999864     4999999999 99999999999999999999999999999998865533

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=6.9e-20  Score=130.08  Aligned_cols=68  Identities=18%  Similarity=0.290  Sum_probs=64.0

Q ss_pred             CCCCChHHHHHHHHHHHhhCCc------hhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC
Q 044864           66 RGNFAEDEEDLIIKLHALLGNR------WSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH  133 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~------W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~  133 (214)
                      ++.||+|||++|+++|.+||..      |..||..|||||++||++||+++|.|.+++..|+.+||.++.+.+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~   74 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   74 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhh
Confidence            5799999999999999999964      9999999999999999999999999999999999999999987753

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=5.8e-20  Score=117.81  Aligned_cols=50  Identities=30%  Similarity=0.724  Sum_probs=48.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD   63 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~   63 (214)
                      |++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999989999999998 999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=7.3e-19  Score=113.45  Aligned_cols=51  Identities=35%  Similarity=0.752  Sum_probs=48.2

Q ss_pred             CcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           64 LKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        64 ~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      +.+|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4689999999999999999999 68999999999999999999999999873

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.5e-18  Score=109.64  Aligned_cols=47  Identities=49%  Similarity=0.905  Sum_probs=45.0

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      +++||+|||++|+++|.+||++|+.||..|||||++||++||+++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.3e-17  Score=106.67  Aligned_cols=49  Identities=27%  Similarity=0.571  Sum_probs=46.3

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      +++||.+||++|+++|.+|| ++|..||..|+|||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            57899999999999999999 68999999999999999999999999873

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.66  E-value=1.1e-17  Score=118.02  Aligned_cols=73  Identities=21%  Similarity=0.410  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCccccccccc---cccccccccccchhhccc-----CCCcCCCCChHHHHHHHHHHHhhCC
Q 044864           15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAA---GLARCGKSCRLRWINYLR-----PDLKRGNFAEDEEDLIIKLHALLGN   86 (214)
Q Consensus        15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~---~~~Rs~~qcr~Rw~~~l~-----p~~~~~~Wt~eED~~L~~lv~~~G~   86 (214)
                      +||+|||++|+++|.+||.++|..|++.+   ..+|++.||++||.++|+     +..+++.|+++|   |+..|..++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            79999999999999999999999999753   238999999999999984     667888898776   4455555555


Q ss_pred             chhh
Q 044864           87 RWSL   90 (214)
Q Consensus        87 ~W~~   90 (214)
                      .|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.1e-17  Score=107.65  Aligned_cols=53  Identities=25%  Similarity=0.445  Sum_probs=48.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCcccccccc--ccccccccccccchhhcccCCCc
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQA--AGLARCGKSCRLRWINYLRPDLK   65 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~--~~~~Rs~~qcr~Rw~~~l~p~~~   65 (214)
                      ++++||+|||++|+++|++||.++|..|++.  ++ +|++.||++||.++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999899999987  44 89999999999999988764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.6e-16  Score=100.46  Aligned_cols=51  Identities=22%  Similarity=0.417  Sum_probs=46.7

Q ss_pred             cCCCCChHHHHHHHHHHHhhC-Cchhhhccc--CCCCCHHHHHHHHHHHhhhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLG-NRWSLIAGR--LPGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~--lpgRt~~q~r~rw~~~l~~~~  115 (214)
                      ++++||+|||++|+++|.+|| ++|..||..  |++||+.||++||.+++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            467999999999999999999 689999987  569999999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-16  Score=100.26  Aligned_cols=44  Identities=20%  Similarity=0.644  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864           15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus        15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      .||+|||++|+++|++||.++|..||+.|+ +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999999 99999999999986

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-16  Score=101.79  Aligned_cols=49  Identities=31%  Similarity=0.463  Sum_probs=44.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCcccccccccc-ccccccccccchhhcc
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAG-LARCGKSCRLRWINYL   60 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rs~~qcr~Rw~~~l   60 (214)
                      ++++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            588999999999999999999989999998643 2899999999999864

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.5e-16  Score=99.24  Aligned_cols=47  Identities=21%  Similarity=0.540  Sum_probs=44.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhccc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      |++||+|||++|+++|++||. +|..||+.|+ |||+.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999996 5999999999 9999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-15  Score=97.61  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=43.5

Q ss_pred             cCCCCChHHHHHHHHHHHhhC-CchhhhcccC--CCCCHHHHHHHHHHHhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLG-NRWSLIAGRL--PGRTANEVKNYWNSHLR  112 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~l--pgRt~~q~r~rw~~~l~  112 (214)
                      ++++||+|||++|+++|.+|| ++|..|+..+  .|||+.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 6999999875  59999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.5e-15  Score=100.05  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             CCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCc
Q 044864           67 GNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDP  122 (214)
Q Consensus        67 ~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~  122 (214)
                      ..||.|||.+|++++..||.+|..||.+|||||+.||++||+.++++..+.+....
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~   58 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKE   58 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            57999999999999999999999999999999999999999999998876555433

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.6e-15  Score=92.94  Aligned_cols=43  Identities=16%  Similarity=0.304  Sum_probs=41.2

Q ss_pred             CCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHH
Q 044864           68 NFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSH  110 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~  110 (214)
                      .||.+||.+|+++|..|| ++|..||..|+|||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999876

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.5e-15  Score=96.98  Aligned_cols=51  Identities=16%  Similarity=0.505  Sum_probs=46.9

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCC---ccccccccccccccccccccchhh
Q 044864            7 DKQDTNKGAWSKQEDQKLIDYIRKHGEG---CWRTIPQAAGLARCGKSCRLRWIN   58 (214)
Q Consensus         7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rs~~qcr~Rw~~   58 (214)
                      +++...+++||+|||++|+++|..||.+   +|..||+.|| +|++.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5677889999999999999999999976   4999999999 9999999999974

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6e-14  Score=92.53  Aligned_cols=50  Identities=12%  Similarity=0.243  Sum_probs=44.9

Q ss_pred             cCCCcCCCCChHHHHHHHHHHHhhCC----chhhhcccCCCCCHHHHHHHHHHH
Q 044864           61 RPDLKRGNFAEDEEDLIIKLHALLGN----RWSLIAGRLPGRTANEVKNYWNSH  110 (214)
Q Consensus        61 ~p~~~~~~Wt~eED~~L~~lv~~~G~----~W~~Ia~~lpgRt~~q~r~rw~~~  110 (214)
                      .+...+++||.|||.+|+++|..||.    +|..||..|||||+.||+.||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34567789999999999999999994    599999999999999999999753

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.6e-15  Score=99.44  Aligned_cols=59  Identities=20%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHH
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDE   73 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eE   73 (214)
                      .++||+|||++|+++|..|| .+|..||++|+ +||..||+.||.+++.+..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            36899999999999999999 57999999999 9999999999999998877777665443

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.43  E-value=6e-14  Score=98.42  Aligned_cols=57  Identities=21%  Similarity=0.357  Sum_probs=48.3

Q ss_pred             CCChHHHHHHHHHHHhhC-Cchhhhccc----CCCCCHHHHHHHHHHHhhhhh-----hhCCCCccc
Q 044864           68 NFAEDEEDLIIKLHALLG-NRWSLIAGR----LPGRTANEVKNYWNSHLRRKL-----INMGIDPKN  124 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~~----lpgRt~~q~r~rw~~~l~~~~-----~~~~~~~~e  124 (214)
                      +||.|||++|+++|.+|| ++|..|++.    ++|||+.||++||.++|+...     +++.++|+|
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e   68 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD   68 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH
Confidence            899999999999999999 699999874    689999999999999997554     445555444

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.38  E-value=2.6e-13  Score=90.29  Aligned_cols=46  Identities=24%  Similarity=0.433  Sum_probs=41.5

Q ss_pred             CCCChHHHHHHHHHHHhhCC----chhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           67 GNFAEDEEDLIIKLHALLGN----RWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        67 ~~Wt~eED~~L~~lv~~~G~----~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      .+||.|||.+|++++..||.    +|..||..|||||++||++||+.++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999994    49999999999999999999965443

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=4.7e-13  Score=95.05  Aligned_cols=72  Identities=14%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             cccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCc---hhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           42 AAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNR---WSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        42 ~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~---W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      .++ ..+..++..++.+....+.....||.|||..||+.++++|..   |..||..|+||+++||++||..+++-.
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            444 667777888888888888888899999999999999999977   999999999999999999998888765

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.32  E-value=1.2e-13  Score=91.91  Aligned_cols=44  Identities=14%  Similarity=0.340  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCc---cccccccccccccccccccchhh
Q 044864           14 GAWSKQEDQKLIDYIRKHGEGC---WRTIPQAAGLARCGKSCRLRWIN   58 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~~Rs~~qcr~Rw~~   58 (214)
                      .+||+|||++|+++|..||.+.   |..||..|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5799999999999999999764   999999999 9999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.7e-12  Score=85.64  Aligned_cols=48  Identities=19%  Similarity=0.359  Sum_probs=44.4

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR  113 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~  113 (214)
                      ...||++||.+|++++..||.+|..||..|+|||..||+++|+.+.+.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999887643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.3e-12  Score=85.98  Aligned_cols=47  Identities=19%  Similarity=0.194  Sum_probs=43.4

Q ss_pred             cCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHh
Q 044864           65 KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHL  111 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l  111 (214)
                      ...+||+||+++|++++..||.+|..||..|||||..||+++|+...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999997543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.4e-12  Score=83.95  Aligned_cols=50  Identities=18%  Similarity=0.258  Sum_probs=44.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864            8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus         8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      +......+||+|||++|+++|..|| .+|..||+.|+ +|+..||+.+|...
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLT   61 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT-TSCHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            3444567899999999999999999 56999999999 99999999999764

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.2e-12  Score=83.00  Aligned_cols=47  Identities=23%  Similarity=0.452  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhccc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      ..+||++||++|++++..|| .+|..||+.|+ +||..||+.+|.++..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            46799999999999999999 56999999999 9999999999998653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.6e-10  Score=81.86  Aligned_cols=51  Identities=14%  Similarity=0.341  Sum_probs=45.2

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCc--cccccccccccccccccccchhhcc
Q 044864            9 QDTNKGAWSKQEDQKLIDYIRKHGEGC--WRTIPQAAGLARCGKSCRLRWINYL   60 (214)
Q Consensus         9 ~~~~kg~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~~~~Rs~~qcr~Rw~~~l   60 (214)
                      .+.....||.|||..|++.++++|...  |..||+.|+ +|++.||+.||..++
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            455678999999999999999999543  999999999 999999999998643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=6.1e-07  Score=57.53  Aligned_cols=42  Identities=17%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             CCChHHHHHHHHHHHhhCCchhhhccc-CCCCCHHHHHHHHHH
Q 044864           68 NFAEDEEDLIIKLHALLGNRWSLIAGR-LPGRTANEVKNYWNS  109 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G~~W~~Ia~~-lpgRt~~q~r~rw~~  109 (214)
                      .||+||-.+..+++..||.+|..|++. +|+||..||.+.|+.
T Consensus         3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999999999999985 699999999999874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.1e-07  Score=59.33  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=40.5

Q ss_pred             CCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           67 GNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        67 ~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      +.||.+|+.+|.+++.+|.    .+|..||..| |||..+|..||+.+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            4799999999999999997    5799999999 9999999999975543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2e-07  Score=60.23  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---ccccccccccccccccccccchhhc
Q 044864           14 GAWSKQEDQKLIDYIRKHGEG---CWRTIPQAAGLARCGKSCRLRWINY   59 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rs~~qcr~Rw~~~   59 (214)
                      +.||.+|+.+|.+++.+|+.+   .|..||..++  |+..+|..||..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            579999999999999999744   5999999995  9999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=9.6e-07  Score=56.59  Aligned_cols=43  Identities=19%  Similarity=0.174  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCcccccccc-ccccccccccccchhhc
Q 044864           15 AWSKQEDQKLIDYIRKHGEGCWRTIPQA-AGLARCGKSCRLRWINY   59 (214)
Q Consensus        15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~-~~~~Rs~~qcr~Rw~~~   59 (214)
                      .||+||-.++.+++..|| .+|..|++. ++ +|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            699999999999999999 579999985 57 99999999988653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=4.7e-05  Score=48.74  Aligned_cols=47  Identities=19%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             CCCCChHHHHHHHHHHHhhCC---------chhhhcc-cCCCCCHHHHHHHHHHHhh
Q 044864           66 RGNFAEDEEDLIIKLHALLGN---------RWSLIAG-RLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~---------~W~~Ia~-~lpgRt~~q~r~rw~~~l~  112 (214)
                      +.+||.+||+.|++.|..+..         =|..++. .+|.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            468999999999999998741         2999985 6799999999999988875

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00011  Score=43.74  Aligned_cols=46  Identities=22%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchhhhcc---cCCCCCHHHHHHHHHHHh
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWSLIAG---RLPGRTANEVKNYWNSHL  111 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~---~lpgRt~~q~r~rw~~~l  111 (214)
                      +..||.||-.-|...|+.+|+.|..|-=   +-|||+...+..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            3579999999999999999999999943   238999999999987653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3.4e-05  Score=49.42  Aligned_cols=48  Identities=17%  Similarity=0.480  Sum_probs=39.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------ccccccc-cccccccccccccchhhccc
Q 044864           13 KGAWSKQEDQKLIDYIRKHGEG--------CWRTIPQ-AAGLARCGKSCRLRWINYLR   61 (214)
Q Consensus        13 kg~WT~eED~~L~~~v~~~g~~--------~W~~Ia~-~~~~~Rs~~qcr~Rw~~~l~   61 (214)
                      +.+||.|||+.|+++|..+...        =|..+++ .++ .+|-.+-++||...|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999998422        3999985 566 8899999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.85  E-value=0.0009  Score=43.21  Aligned_cols=46  Identities=13%  Similarity=0.070  Sum_probs=38.2

Q ss_pred             CCCCChHHHHHHHHHHHhhCCchh---hhccc--CCCCCHHHHHHHHHHHh
Q 044864           66 RGNFAEDEEDLIIKLHALLGNRWS---LIAGR--LPGRTANEVKNYWNSHL  111 (214)
Q Consensus        66 ~~~Wt~eED~~L~~lv~~~G~~W~---~Ia~~--lpgRt~~q~r~rw~~~l  111 (214)
                      +-.||+||-++.++++..+|..|.   .|...  ++|+|..||+.+-+.+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999998774   56555  59999999998876554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0013  Score=42.76  Aligned_cols=52  Identities=23%  Similarity=0.489  Sum_probs=44.4

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhC---CCccccccccccccccccccccchhhcccC
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHG---EGCWRTIPQAAGLARCGKSCRLRWINYLRP   62 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p   62 (214)
                      ...-+.|+++|=++|-.++....   .+-|..||..+| .|++..|...|..-+..
T Consensus         5 ~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             cCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            34567999999999999998764   457999999999 99999999999876543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.00096  Score=43.06  Aligned_cols=48  Identities=8%  Similarity=0.166  Sum_probs=36.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCcc--ccccccccc-cccccccccchhhc
Q 044864           12 NKGAWSKQEDQKLIDYIRKHGEGCW--RTIPQAAGL-ARCGKSCRLRWINY   59 (214)
Q Consensus        12 ~kg~WT~eED~~L~~~v~~~g~~~W--~~Ia~~~~~-~Rs~~qcr~Rw~~~   59 (214)
                      .+-.||+||-++++.+|..+|.+.|  ..|.+.|+. ++|..|++.+.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3568999999999999999996644  366665531 77888888765554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.011  Score=38.24  Aligned_cols=50  Identities=22%  Similarity=0.268  Sum_probs=42.7

Q ss_pred             cCCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864           65 KRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLRRK  114 (214)
Q Consensus        65 ~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~  114 (214)
                      ..+.|+++|-.+|-.++..+.    +=|..||..+..||...|...|...++.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            456899999999999998887    34999999999999999999998765543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.13  E-value=0.0097  Score=35.11  Aligned_cols=44  Identities=16%  Similarity=0.254  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcccccccccc--ccccccccccchhh
Q 044864           14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQAAG--LARCGKSCRLRWIN   58 (214)
Q Consensus        14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rs~~qcr~Rw~~   58 (214)
                      ..||.||-.-|...|+++|.. |..|-=.+|  .||+......+|..
T Consensus         2 knft~eEv~YL~~GVK~~G~~-WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNH-WNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC-HHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcch-hhhhhhccCCCCCchhhHHHHHHHh
Confidence            469999999999999999965 999965443  38888877777654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.62  E-value=0.12  Score=31.47  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=38.9

Q ss_pred             CCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864           68 NFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLR  112 (214)
Q Consensus        68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~  112 (214)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+......-.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~   46 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE   46 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            489999999999999999 689999999999999999876554433

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.30  E-value=0.082  Score=38.15  Aligned_cols=53  Identities=21%  Similarity=0.301  Sum_probs=41.9

Q ss_pred             CCcCCCCChHHHHHHHHHHHhhC-Cc---hhhhcc------------cCCCCCHHHHHHHHHHHhhhhh
Q 044864           63 DLKRGNFAEDEEDLIIKLHALLG-NR---WSLIAG------------RLPGRTANEVKNYWNSHLRRKL  115 (214)
Q Consensus        63 ~~~~~~Wt~eED~~L~~lv~~~G-~~---W~~Ia~------------~lpgRt~~q~r~rw~~~l~~~~  115 (214)
                      ..++..+|+|||.-|+-.+.+|| ++   |..|-.            .+..||+..+..|...+|.-..
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            34455799999999999999999 55   888732            1257999999999998887543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.57  E-value=0.12  Score=31.36  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCccccccccccccccccccc
Q 044864           15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCR   53 (214)
Q Consensus        15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr   53 (214)
                      .|+..|=+.++.+..+||..+-..||..|. +++...++
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~-~Kt~eEV~   38 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVI   38 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhc-CCCHHHHH
Confidence            499999999999999999889999999997 88887754

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.49  E-value=0.27  Score=35.27  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=28.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCc---cccccccc
Q 044864           10 DTNKGAWSKQEDQKLIDYIRKHGEGC---WRTIPQAA   43 (214)
Q Consensus        10 ~~~kg~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~   43 (214)
                      ..++..+|.|||.-|+-++.+||.++   |..|-..+
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~I   82 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI   82 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            44555799999999999999999998   88876544