Citrus Sinensis ID: 044890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MACSNNSIVACNGSNDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPVSTGTKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLILEPIPVEL
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccc
ccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHcccHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHEEccccccc
macsnnsivacngsndplqrrsanyhasiwnpeliesfttpytYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNILkgdatikdlNATSLHFRLLRehghpvstgtkrdgrfhdNLREDIEGLLNLFEAsflgiegedvLEEANIFCTEHLKESLGTLGSKIILAEQVQqsldipsywriprieaqnfiklyptddesgpILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKaqfskcriglTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEArwfskgytptaKEYIEnawvsvgspAAIVHAYILLQLqgsndltenslsclkvehgydEMIYWSSLISRLSNdlgnsavelkrgDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKklngknlyksdfpesMAKMCLDMsrtahcifhgdgigtstgVSRDRLVSLIlepipvel
MACSNNSIVACNGSNDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLrehghpvstgtkrdgrfHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIeegiseeeaRDRIKSLIIYswkklngknLYKSDFPESMAKMCLDMSRTAHCIFHGdgigtstgvsRDRLVSlilepipvel
MACSNNSIVACNGSNDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPVSTGTKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLILEPIPVEL
**********************ANYHASIWNPELIESFTTPYTYELYANRLDELKQ****LF*********LLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPV*******GRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLILE******
***************************SIWNPELIESFTT**********LDELKQK***********TSELLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPVSTGTKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLILEPIPVEL
MACSNNSIVACNGSNDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPVSTGTKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLILEPIPVEL
*******************RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPVSTGTKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLILEPIPVEL
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MACSNNSIVACNGSNDPLQRRSANYHASIWNPELIESFTTPYTxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLKLTDSVQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPVSTGTKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFHGDGIGTSTGVSRDRLVSLILEPIPVEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q6PWU2590 (-)-alpha-terpineol synth no no 0.942 0.889 0.457 1e-139
Q93X23597 Myrcene synthase, chlorop N/A no 0.965 0.901 0.454 1e-137
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.929 0.875 0.432 1e-130
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.982 0.901 0.419 1e-120
Q8L5K3606 (R)-limonene synthase 1 O N/A no 0.962 0.884 0.417 1e-119
A7IZZ1622 (-)-limonene synthase, ch N/A no 0.967 0.866 0.408 1e-117
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.973 0.903 0.396 1e-116
Q6EJ97608 Isoprene synthase, chloro N/A no 0.951 0.871 0.401 1e-116
Q50L36595 Isoprene synthase, chloro N/A no 0.946 0.885 0.409 1e-116
Q7XAS7595 Isoprene synthase, chloro N/A no 0.946 0.885 0.401 1e-115
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function desciption
 Score =  496 bits (1276), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/547 (45%), Positives = 366/547 (66%), Gaps = 22/547 (4%)

Query: 20  RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
           RR+ANYH +IW+ + ++S  + Y  E Y  RLD+LK+  K +    K+   +L +L D +
Sbjct: 49  RRTANYHPTIWDYDYVQSLRSDYVGETYTRRLDKLKRDVKPMLGKVKKPLDQL-ELIDVL 107

Query: 80  QKLGVAYHFEEEIKEAMNILKG------DATIKDLNATSLHFRLLREHGHPVSTGT---- 129
           Q+LG+ YHF++EIK  +N +        +    DL AT+L FRLLR+HG+ V        
Sbjct: 108 QRLGIYYHFKDEIKRILNGIYNQYNRHEEWQKDDLYATALEFRLLRQHGYDVPQDVFSRF 167

Query: 130 KRD-GRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILA 188
           K D G F   L ED++G+L L+EAS+L ++GE  +E+A  F   HL + L     +  LA
Sbjct: 168 KDDTGSFKACLCEDMKGMLCLYEASYLCVQGESTMEQARDFAHRHLGKGLEQNIDQN-LA 226

Query: 189 EQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELA 248
            +V+ +L++P +WR+PR+EA+ FI +Y    +  PILL  AKLD+N+VQ+ HQ++L+ ++
Sbjct: 227 IEVKHALELPLHWRMPRLEARWFIDVYEKRQDMNPILLEFAKLDFNMVQATHQEDLRHMS 286

Query: 249 RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYG 308
            WWS+    EKL+FARDRLMEN+L  +G+ F+ Q+  CR   TK   ++T IDD+YDVYG
Sbjct: 287 SWWSSTRLGEKLNFARDRLMENFLWTVGVIFEPQYGYCRRMSTKVNTLITIIDDVYDVYG 346

Query: 309 SIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKK 368
           ++DELELFT+ V RW+I A ++ LPEYM++C+LA++N  NE+AYD +K HGL+ +SY++K
Sbjct: 347 TMDELELFTDVVDRWDINA-MDPLPEYMKLCFLALYNSTNEMAYDALKEHGLHIVSYLRK 405

Query: 369 EWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENS 428
            W +LC SYL+EA+W+   YTP+ +EYI N+W+S+  P  +VHAY L+    +N +T+ +
Sbjct: 406 AWSDLCKSYLLEAKWYYSRYTPSLQEYISNSWISISGPVILVHAYFLV----ANPITKEA 461

Query: 429 LSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDR 488
           L  L+  H    +I WSS+I RLS+DLG S  ELKRGDV KSIQCYM E G SEE+AR  
Sbjct: 462 LQSLERYHN---IIRWSSMILRLSDDLGTSLDELKRGDVPKSIQCYMYETGASEEDARKH 518

Query: 489 IKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIF-HGDGIGTSTGVSRDRLVS 547
              LI  +WKKLN     +S FPE+   + ++++R A C++ HGDG G   G + DR++S
Sbjct: 519 TSYLIGETWKKLNEDGAVESPFPETFIGIAMNLARMAQCMYQHGDGHGIEYGETEDRVLS 578

Query: 548 LILEPIP 554
           L++EPIP
Sbjct: 579 LLVEPIP 585
Mediates the conversion of geranyl diphosphate into alpha-terpineol, a monoterpenol. Monoterpenols contribute to the final grape and wine aroma and flavor. Also forms some 1,8-cineole and traces of other monoterpenoids.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 1
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function description
>sp|Q6EJ97|ISPS_PUEML Isoprene synthase, chloroplastic OS=Pueraria montana var. lobata GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q50L36|ISPS_POPAL Isoprene synthase, chloroplastic OS=Populus alba GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q7XAS7|ISPS_POPTM Isoprene synthase, chloroplastic OS=Populus tremuloides GN=ISPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
336318895543 terpene synthase 4 [Populus trichocarpa] 0.949 0.974 0.598 0.0
224093244542 predicted protein [Populus trichocarpa] 0.947 0.974 0.602 0.0
225447384602 PREDICTED: myrcene synthase, chloroplast 0.944 0.873 0.581 1e-177
147807928619 hypothetical protein VITISV_032405 [Viti 0.944 0.849 0.564 1e-175
225441515602 PREDICTED: myrcene synthase, chloroplast 0.944 0.873 0.576 1e-175
313755436602 (3R)-linalool synthase [Vitis vinifera] 0.944 0.873 0.574 1e-174
225447386585 PREDICTED: myrcene synthase, chloroplast 0.942 0.897 0.553 1e-173
255549277584 (R)-limonene synthase, putative [Ricinus 0.962 0.917 0.550 1e-170
224102735482 predicted protein [Populus trichocarpa] 0.843 0.975 0.609 1e-165
339744294582 trans-ocimene synthase [Litsea cubeba] 0.942 0.902 0.519 1e-153
>gi|336318895|gb|AEI52904.1| terpene synthase 4 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/546 (59%), Positives = 418/546 (76%), Gaps = 17/546 (3%)

Query: 19  QRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDS 78
           +RRSA+YH S+W  +LIES +TPY+YEL+ANRL+ELKQ+AK    S  E  ++L KL DS
Sbjct: 5   ERRSADYHPSVWELQLIESLSTPYSYELHANRLEELKQEAKRALVSTNEPRAKL-KLIDS 63

Query: 79  VQKLGVAYHFEEEIKEAMNILKGDATIKDLNATSLHFRLLREHGHPVSTG------TKRD 132
           +Q+LGVAYHFE EI+EA+ + + D    DL+ TSLHFRLLR+H   VST       + RD
Sbjct: 64  IQRLGVAYHFEREIEEAIKLTELDVN-GDLHTTSLHFRLLRQHAFSVSTDVFGKFRSNRD 122

Query: 133 GRFHDNLREDIEGLLNLFEASFLGIEGED-VLEEANIFCTEHLKESLGTLGSKIILAEQV 191
           G+F D++R D+ GLL+L+EAS+LG+ GED VLEEA  F ++HLK  +       +LA+QV
Sbjct: 123 GKFKDSIRTDVAGLLSLYEASYLGVPGEDHVLEEAKNFSSKHLKSLMLETIKDEVLAKQV 182

Query: 192 QQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELARWW 251
           +QSL++P +W++PRIEA++FI +Y +D+     LL LAKLDYNLVQS HQ+ELK+LARWW
Sbjct: 183 KQSLEVPLHWKMPRIEARDFIDIYSSDNTRNLDLLELAKLDYNLVQSQHQRELKDLARWW 242

Query: 252 SNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSID 311
             LGFK+KLSF+RDRLMENYL  MG+ F+ QFSKCRIGLTKFVCILTAIDDIYDVYG  +
Sbjct: 243 GALGFKKKLSFSRDRLMENYLWAMGMVFEPQFSKCRIGLTKFVCILTAIDDIYDVYGLPE 302

Query: 312 ELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWE 371
           ELELFT+ V RW+  A+ ++LP+YM+ICYLA+FNF NE+AYDVM+ HGL  L Y+ +EW 
Sbjct: 303 ELELFTKLVNRWDSMAI-DDLPDYMKICYLALFNFVNEMAYDVMRDHGLFVLPYLVEEWA 361

Query: 372 NLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENSLSC 431
           NLC SYLVEARWFS  Y+PT  EY+ENA  S+GSPAA+ HAY+LL   GS     + + C
Sbjct: 362 NLCGSYLVEARWFSSKYSPTLSEYLENARTSIGSPAALAHAYMLL---GSPIAQSSLMDC 418

Query: 432 LKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDRIKS 491
            K  HG D++IYWSSLI+RLS+DLG    E +RGDV KSIQCYMIE+G SE+E+++ IK 
Sbjct: 419 FK--HGSDQLIYWSSLITRLSDDLGTYTAESERGDVTKSIQCYMIEKGASEKESKEHIKG 476

Query: 492 LIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLIL 550
           LI  +WK+LN +N  K   P+ +  + L+M+RTA CIF  GDGIGTSTGV+RDRL SLI+
Sbjct: 477 LINQAWKELNKEN-SKCSLPKPLVNLSLNMARTAQCIFQFGDGIGTSTGVTRDRLTSLIV 535

Query: 551 EPIPVE 556
           EPIPV+
Sbjct: 536 EPIPVK 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224093244|ref|XP_002309850.1| predicted protein [Populus trichocarpa] gi|222852753|gb|EEE90300.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447384|ref|XP_002275106.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|147807928|emb|CAN62153.1| hypothetical protein VITISV_032405 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441515|ref|XP_002276045.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755436|gb|ADR74209.1| (3R)-linalool synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447386|ref|XP_002275273.1| PREDICTED: myrcene synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255549277|ref|XP_002515692.1| (R)-limonene synthase, putative [Ricinus communis] gi|223545129|gb|EEF46639.1| (R)-limonene synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224102735|ref|XP_002334138.1| predicted protein [Populus trichocarpa] gi|222869723|gb|EEF06854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|339744294|gb|AEJ91554.1| trans-ocimene synthase [Litsea cubeba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.937 0.881 0.430 1.7e-121
UNIPROTKB|Q50L36595 ISPS "Isoprene synthase, chlor 0.946 0.885 0.410 4.3e-109
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.938 0.964 0.402 9e-109
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.973 0.903 0.397 1.5e-108
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.942 0.870 0.397 8.1e-108
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.944 0.963 0.401 1.5e-106
UNIPROTKB|Q672F7595 EBOS "Tricyclene synthase EBOS 0.967 0.905 0.398 1.9e-106
UNIPROTKB|Q5UB07580 TPS4 "Tricyclene synthase TPS4 0.962 0.924 0.398 5.1e-106
UNIPROTKB|B5A434576 B5A434 "(+)-alpha-terpineol sy 0.956 0.925 0.386 1e-100
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.955 0.886 0.366 8.2e-99
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 235/546 (43%), Positives = 361/546 (66%)

Query:    20 RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
             RRSANYH +IW+ + ++S T+ Y    Y  R+++LK+  +     A     +L +L D +
Sbjct:    54 RRSANYHPNIWDYDSVQSLTSDYKAYTYLERVEKLKEDVRRTLQEAVGLLDQL-ELVDCI 112

Query:    80 QKLGVAYHFEEEIKEAMNILKGDATIK-----DLNATSLHFRLLREHGHPVSTGT-KR-- 131
              +LGV YHF++EIKE +  +  +         DL A +L+FRLLR+HG+ V  G   R  
Sbjct:   113 HRLGVGYHFDKEIKEILKTISTEPNNMGLIDGDLYAMALYFRLLRQHGYEVPQGVFNRFM 172

Query:   132 --DGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESLGTLGSKIILAE 189
                  F  +L  D++G+L+L+EAS+L +EGE  L+EA  F   HL+   G + S   L  
Sbjct:   173 DDSSSFKASLCNDVKGMLSLYEASYLALEGETTLDEAKAFTYRHLRGLKGNIDSN--LKG 230

Query:   190 QVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELAR 249
              V+ +L++P +WR+ R+EA+ +I  Y   ++  P+LL LAKLD+N+VQ+++Q ++++++ 
Sbjct:   231 LVEHALELPLHWRVLRLEARWYIDTYERMEDMNPLLLELAKLDFNIVQNVYQGQVRKMSG 290

Query:   250 WWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGS 309
             WW +LG  +KL FARDRLME +L  +G+ F+ QF++CR  LTK   ++T IDD+YDVYGS
Sbjct:   291 WWKDLGLGQKLGFARDRLMEGFLWTIGVKFEPQFAQCREVLTKINQLITTIDDVYDVYGS 350

Query:   310 IDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKE 369
             ++ELELFT+AV RW+  A +EELPEYM+IC+LA++N  NE+AYD +K  G++ + Y++K 
Sbjct:   351 LEELELFTKAVDRWDTNA-MEELPEYMKICFLALYNTVNEIAYDTLKEQGVDVIPYLQKS 409

Query:   370 WENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYI-LLQLQGSNDLTENS 428
             W +LC +YLVEARW+  GYTPT  EY+ NAW+S+  P  +VHAY+ ++Q+     +T+ +
Sbjct:   410 WADLCKAYLVEARWYYSGYTPTLDEYLNNAWISIAGPVILVHAYVSMIQM-----ITKEA 464

Query:   429 LSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDR 488
             L  L     Y+ ++ WSS+I RL++DL  S  EL+RGDV KSIQCYM E   SE  AR++
Sbjct:   465 L--LDCVGSYESIMQWSSMILRLADDLATSTDELERGDVPKSIQCYMHENTASEVVAREQ 522

Query:   489 IKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIF-HGDGIGTSTGVSRDRLVS 547
             +++ I   WKK+N K++  S  P+      ++++R A C++ HGDG G     S+D ++S
Sbjct:   523 MRARISDIWKKMN-KDVALSPLPQPFKAAAVNLARMAQCMYQHGDGHGNPHRESKDHILS 581

Query:   548 LILEPI 553
             L++EPI
Sbjct:   582 LVVEPI 587
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
GO:0043693 "monoterpene biosynthetic process" evidence=IDA
UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0DI76CIN1_ARATH4, ., 2, ., 3, ., 1, 0, 80.36410.94970.8816yesno
P0DI77CIN2_ARATH4, ., 2, ., 3, ., 1, 0, 80.36410.94970.8816yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 6e-91
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-89
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-51
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 4e-43
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 5e-28
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 7e-23
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 4e-09
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  552 bits (1425), Expect = 0.0
 Identities = 221/550 (40%), Positives = 347/550 (63%), Gaps = 25/550 (4%)

Query: 20  RRSANYHASIWNPELIESFTTPYT-YELYANRLDELKQKAKDLFASAKESTS--ELLKLT 76
           R SAN+  S+W  +   S ++ Y+  +     ++ELK++ + +   ++      E L L 
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 77  DSVQKLGVAYHFEEEIKEAMN------ILKGDATIKDLNATSLHFRLLREHGHPVSTG-- 128
           D +Q+LG++YHFE+EIKE ++        +G++   DL  T+L FRLLR+HG+ VS+   
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVF 120

Query: 129 ---TKRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKESL-GTLGSK 184
                 DG+F ++L +D++G+L+L+EAS L   GED+L+EA  F T+HL+E L       
Sbjct: 121 KKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIID 180

Query: 185 IILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQEL 244
             L+ +++ +L+IP +  +PR+EA+ +I+ Y  +D+    LL LAKLD+N++Q++HQ+EL
Sbjct: 181 PDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEEL 240

Query: 245 KELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIY 304
           K L+RWW +L    KL FARDRL+E Y    G  F+ Q+S  RI L K + ++T IDD Y
Sbjct: 241 KILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTY 300

Query: 305 DVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLS 364
           DVYG+++ELELFTEAV+RW+I A+ ++LPEYM+I + A+ N  NE+  +++K  G   + 
Sbjct: 301 DVYGTLEELELFTEAVERWDISAI-DQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVP 359

Query: 365 YIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDL 424
           Y+K+ W++L  +YLVEA+W  +GY PT +EY+ENA VS+G    ++ +++ +     + L
Sbjct: 360 YLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGM----GDIL 415

Query: 425 TENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEE 484
           TE +   L+      +++  SS I RL ND+     E+KRGDVA SI+CYM E G+SEEE
Sbjct: 416 TEEAFEWLES---RPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEE 472

Query: 485 ARDRIKSLIIYSWKKLNGKNLYK-SDFPESMAKMCLDMSRTAHCIF-HGDGIGTSTGVSR 542
           AR+ IK +I  +WK+LN + L   SD P  + +  L+++R     +  GDG     G  +
Sbjct: 473 AREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIK 532

Query: 543 DRLVSLILEP 552
           D + SL+ EP
Sbjct: 533 DHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.84
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.77
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.56
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 92.28
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 90.45
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 86.31
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 86.06
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 83.01
PLN02890422 geranyl diphosphate synthase 81.02
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=4e-148  Score=1226.03  Aligned_cols=524  Identities=42%  Similarity=0.752  Sum_probs=499.9

Q ss_pred             CCCCCCCCCCCCccccccCCCccc-HHHHHHHHHHHHHHHHHHhhh---cchhhhhhhhHHHHHHHhCcccccHHHHHHH
Q 044890           20 RRSANYHASIWNPELIESFTTPYT-YELYANRLDELKQKAKDLFAS---AKESTSELLKLTDSVQKLGVAYHFEEEIKEA   95 (557)
Q Consensus        20 r~~~~~~ps~W~~~f~~~~~~~~~-~~~~~~~~~~lk~~v~~~l~~---~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~   95 (557)
                      |++++||||+|||+|+++++.++. .+.+.+++++||++||+|+..   +.| ++++|+|||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~-~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVD-LFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            789999999999944444444443 336889999999999999976   568 999999999999999999999999999


Q ss_pred             HHhh-hcCC-----CCCchhhHHHHHHHhhhcCccccccc-----cCCCCcccccchhhHHHHHHHhhcCCCCCCchHHH
Q 044890           96 MNIL-KGDA-----TIKDLNATSLHFRLLREHGHPVSTGT-----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLE  164 (557)
Q Consensus        96 L~~i-~~~~-----~~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l~~dv~gll~LyeAs~l~~~gE~iLd  164 (557)
                      |++| +...     ...||++|||+|||||||||+|||||     |++|+|++++.+||+|||||||||||+||||+|||
T Consensus        80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd  159 (542)
T cd00684          80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD  159 (542)
T ss_pred             HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence            9999 4321     25799999999999999999999999     77899999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhcCC-CCCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCCCCHHHHHHHHhhhHHHHHhhHHH
Q 044890          165 EANIFCTEHLKESLGTL-GSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQE  243 (557)
Q Consensus       165 ea~~ft~~~L~~~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E  243 (557)
                      ||++||++||++.++++ .++++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||+|
T Consensus       160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E  239 (542)
T cd00684         160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE  239 (542)
T ss_pred             HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence            99999999999998763 46889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhh
Q 044890          244 LKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRW  323 (557)
Q Consensus       244 l~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rW  323 (557)
                      |+++++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||.+|++.||+||+||
T Consensus       240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rw  319 (542)
T cd00684         240 LKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERW  319 (542)
T ss_pred             HHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhc
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccc
Q 044890          324 EIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSV  403 (557)
Q Consensus       324 d~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~Ss  403 (557)
                      |+++ ++++|+|||+||.+|++++++++.++.+.+|++++.|++++|++++++|++||+|+++||+||++|||++|++|+
T Consensus       320 d~~~-~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~  398 (542)
T cd00684         320 DISA-IDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSI  398 (542)
T ss_pred             cccc-hhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHh
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCHH
Q 044890          404 GSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEE  483 (557)
Q Consensus       404 G~~~~~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~E  483 (557)
                      |+++++++++++|    |..+|+++++|+.   .+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|+|
T Consensus       399 g~~~~~~~~~~~~----g~~l~~e~~e~~~---~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~e  471 (542)
T cd00684         399 GLGPLLLTSFLGM----GDILTEEAFEWLE---SRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEE  471 (542)
T ss_pred             hHHHHHHHHHHhc----CCCCCHHHHHHHh---ccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHH
Confidence            9999999999999    9999999999996   66999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccC-CCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcC
Q 044890          484 EARDRIKSLIIYSWKKLNGKNLYK-SDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEP  552 (557)
Q Consensus       484 eA~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~p  552 (557)
                      +|+++++++|+++||++|++++++ +++|++|+++++|++|+++++|+ +||||.|++.+|++|++||++|
T Consensus       472 eA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         472 EAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999999999998 78999999999999999999999 9999999888999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-116
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-112
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-105
2j5c_A569 Rational Conversion Of Substrate And Product Specif 1e-103
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 6e-81
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 9e-80
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-77
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-77
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-77
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-77
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-77
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-77
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-77
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 4e-77
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 4e-77
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 8e-67
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 4e-66
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 6e-19
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/550 (40%), Positives = 345/550 (62%), Gaps = 23/550 (4%)
Query: 20  RRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFASAKESTSELLKLTDSV 79
           RRSA+Y  + W+ + + S  T  + E+Y ++  +L+ + +    + K     LL+L D+V
Sbjct: 15  RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 80  QKLGVAYHFEEEIKEAMNILKGDA-----TIKDLNATSLHFRLLREHGHPVS----TGTK 130
           Q+LG+ Y FE +I+ A++           T   L+AT+L FRLLR+HG  VS    +G K
Sbjct: 75  QRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFK 134
Query: 131 -RDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCTEHLKE-SLGTLGSKIILA 188
            ++G F +NL+ED + +L+L+EASFL +EGE++L+EA +F   HLKE S   +G +  LA
Sbjct: 135 DQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKE--LA 192
Query: 189 EQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELA 248
           EQV  +L++P + R  R+EA   I+ Y   +++  +LL LA LDYN++QS++Q++L+E +
Sbjct: 193 EQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETS 252
Query: 249 RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYG 308
           RWW  +G   KL FARDRL+E++   +G+ F+ Q+S CR  + K    +T IDDIYDVYG
Sbjct: 253 RWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYG 312
Query: 309 SIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKK 368
           ++DELELFT+AV+RW++ A+  +LP+YM++C+LA++N  NE+AYD +K  G N L Y+ K
Sbjct: 313 TLDELELFTDAVERWDVNAI-NDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTK 371
Query: 369 EWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLTENS 428
            W +LC ++L EA+W     TPT  +Y  NAW S   P  ++ AY  +      +  EN 
Sbjct: 372 AWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENL 431
Query: 429 LSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDR 488
                    Y ++I   S I RL NDL +++ E+ RG+ A S+ CYM  +GISEE A + 
Sbjct: 432 -------QKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATES 484
Query: 489 IKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVS 547
           + +LI  +WKK+N + L  S F +   +  ++++R +HC +H GD   +   ++R R++S
Sbjct: 485 VMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLS 544
Query: 548 LILEPI-PVE 556
           +I EPI P E
Sbjct: 545 VITEPILPFE 554
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-160
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-159
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-156
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-154
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-153
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-152
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-124
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-08
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-124
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-123
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-90
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 8e-30
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 3e-10
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 9e-08
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 7e-06
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  466 bits (1201), Expect = e-160
 Identities = 172/565 (30%), Positives = 299/565 (52%), Gaps = 21/565 (3%)

Query: 1   MA--CSNNSIVACNGSNDPLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKA 58
           MA   S     +   SN    R  A++  SIW    +              R  +LK++ 
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNID-AETEKRHQQLKEEV 59

Query: 59  KDLFASAKESTSELLKLTDSVQKLGVAYHFEEEIKEAMNIL--KGDATIKDLNATSLHFR 116
           + +  +   ++++ L   DSVQ+LGV+YHF +EI++ +  +    +    DL  TS+ FR
Sbjct: 60  RKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFR 119

Query: 117 LLREHGHPVSTGTKR-----DGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANIFCT 171
           LLREHG+ VS           G F  ++  D+ GLL L++AS+L + GED+L+EA  F T
Sbjct: 120 LLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTT 179

Query: 172 EHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKL 231
            HL  ++ +L     L+E+V  +L       +PR+EA++++ +Y   +     LL  AK+
Sbjct: 180 HHLSLAVASL--DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKI 237

Query: 232 DYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLT 291
           D+N++Q +H++EL E+ RWW +L F+ KL +ARDR++E Y  + G+ F+ Q+S  R  LT
Sbjct: 238 DFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLT 297

Query: 292 KFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELA 351
           K + + + +DD YD Y + +EL  +T A++RW+I  + +E+PEYM+  Y A+ +   E+ 
Sbjct: 298 KVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCI-DEIPEYMKPSYKALLDVYEEMV 356

Query: 352 YDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAAIVH 411
             V +      + Y K     L  SYLVEA+W  + Y P+ +E+  NA  + G     + 
Sbjct: 357 QLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT 416

Query: 412 AYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSI 471
           +++ +     + +T  +           ++I  S++I R  +D+     + +R D   +I
Sbjct: 417 SFVGM----GDIVTPETFKWA---ASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAI 469

Query: 472 QCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIF-H 530
           +CYM E G++ +EA D     +  +WK LN + L  ++ P  +    L+++R    ++  
Sbjct: 470 ECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYRE 529

Query: 531 GDGIGTSTGVSRDRLVSLILEPIPV 555
           GDG       ++  + SL++EPI +
Sbjct: 530 GDGYTYVGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.98
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.74
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.44
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 84.76
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 83.55
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 82.11
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=6.6e-163  Score=1332.02  Aligned_cols=527  Identities=31%  Similarity=0.602  Sum_probs=490.6

Q ss_pred             CCcCCCCCCCCCCCCccccccCCCcccHHHHHHHHHHHHHHHHHHhhh-cchhhhhhhhHHHHHHHhCcccccHHHHHHH
Q 044890           17 PLQRRSANYHASIWNPELIESFTTPYTYELYANRLDELKQKAKDLFAS-AKESTSELLKLTDSVQKLGVAYHFEEEIKEA   95 (557)
Q Consensus        17 ~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~d~~~~~l~liD~lqrLGi~~hF~~EI~~~   95 (557)
                      ++.||+||||||+|||+||+| ++++..+.+.+++++||++||+||.+ ..| ++++|+|||+||||||+|||++||+++
T Consensus        19 ~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~-~~~~l~lID~lqrLGi~~hF~~EI~~~   96 (554)
T 3g4d_A           19 DEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMAN-STQKLAFIDSVQRLGVSYHFTKEIEDE   96 (554)
T ss_dssp             ------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred             CCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            457999999999999999998 66666778899999999999999975 467 999999999999999999999999999


Q ss_pred             HHhh-hcCC-CCCchhhHHHHHHHhhhcCccccccc-----cCCCCcccccchhhHHHHHHHhhcCCCCCCchHHHHHHH
Q 044890           96 MNIL-KGDA-TIKDLNATSLHFRLLREHGHPVSTGT-----KRDGRFHDNLREDIEGLLNLFEASFLGIEGEDVLEEANI  168 (557)
Q Consensus        96 L~~i-~~~~-~~~dl~~~al~FRlLR~~Gy~vS~dv-----~~~g~F~~~l~~dv~gll~LyeAs~l~~~gE~iLdea~~  168 (557)
                      |++| +... ...||++|||+|||||||||+|||||     |++|+|++++.+||+|||||||||||++|||+|||||+.
T Consensus        97 L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~  176 (554)
T 3g4d_A           97 LENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAIS  176 (554)
T ss_dssp             HHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHH
T ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence            9999 4322 23799999999999999999999999     678999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcCCCCCcchHHHhhhhcCCcccCCchhhHHHHhhhhcCCCCCCCHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 044890          169 FCTEHLKESLGTLGSKIILAEQVQQSLDIPSYWRIPRIEAQNFIKLYPTDDESGPILLTLAKLDYNLVQSIHQQELKELA  248 (557)
Q Consensus       169 ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~ls  248 (557)
                      ||++||++.+.+  ++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++++
T Consensus       177 fs~~~L~~~~~~--~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~  254 (554)
T 3g4d_A          177 FTTHHLSLAVAS--LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEIC  254 (554)
T ss_dssp             HHHHHHHHHSTT--CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999998876  788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhhhcccccCCCHHHHHHHHHHHHhhccccc
Q 044890          249 RWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAV  328 (557)
Q Consensus       249 rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~fD~ygt~eEl~~ft~ai~rWd~~~~  328 (557)
                      ||||++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||+++ 
T Consensus       255 rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~-  333 (554)
T 3g4d_A          255 RWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKC-  333 (554)
T ss_dssp             HHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGG-
T ss_pred             HHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccc-
Confidence            9999999988999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhcccccchhHH
Q 044890          329 LEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVSVGSPAA  408 (557)
Q Consensus       329 ~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~~SsG~~~~  408 (557)
                      +++||+|||+||.+|+|+++|++.++.+.+|.++++|++++|+++++||++||+|+++||+||+||||+||++|+|++++
T Consensus       334 ~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l  413 (554)
T 3g4d_A          334 IDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAML  413 (554)
T ss_dssp             GGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHH
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHH
Confidence            99999999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCChhHHhhhhhccChhHHHHHHHHHHHHhcCccchhhhhhcCCCchHHHHHHHhcCCCHHHHHHH
Q 044890          409 IVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVELKRGDVAKSIQCYMIEEGISEEEARDR  488 (557)
Q Consensus       409 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~n~V~cyMke~gvS~EeA~~~  488 (557)
                      ++++++||    |+.+|+++++|+.   ++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+|+++
T Consensus       414 ~~~~~~~m----g~~lt~e~~e~~~---~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~  486 (554)
T 3g4d_A          414 AITSFVGM----GDIVTPETFKWAA---SDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDV  486 (554)
T ss_dssp             HHHHHHTS----CTTSCHHHHHHHH---TCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHhc----CCCCCHHHHHhcc---ccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHH
Confidence            99999999    9999999999976   8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCchhHHHHHHhhhhcCccC
Q 044890          489 IKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTSTGVSRDRLVSLILEPIPV  555 (557)
Q Consensus       489 i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~~~~k~~i~~l~~~pi~~  555 (557)
                      ++++|+++||+||++|++++++|++|+++++|+||++++||+ +||||.|+..||++|++||++|||+
T Consensus       487 i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          487 FNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999999999889999999999999999999999 9999999888999999999999985
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 557
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-118
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-115
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 5e-52
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 9e-51
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-38
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 9e-25
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  349 bits (898), Expect = e-118
 Identities = 136/332 (40%), Positives = 195/332 (58%), Gaps = 8/332 (2%)

Query: 223 PILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQ 282
           P++  LAKL++N++Q+ HQQELK+L+RWWS L F EKL F RDRL+E++   +G+    Q
Sbjct: 3   PLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQ 62

Query: 283 FSKCRIGLTKFVCILTAIDDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLA 342
               R      + + T IDDIYDVYG++DELELFT+  KRW+  ++   LP YMQ+CY  
Sbjct: 63  HGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESI-TRLPYYMQLCYWG 121

Query: 343 MFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVEARWFSKGYTPTAKEYIENAWVS 402
           + N+ ++ AYD++K HG   L Y++K   +L  +Y  EA+W+  GYTP+  EY+  A +S
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 403 VGSPAAIVHAYILLQLQGSNDLTENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSAVEL 462
           V SPA I   Y        +    +SL        Y +++  + +I RL +DLG S  EL
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLY------QYHDILCLAGIILRLPDDLGTSYFEL 235

Query: 463 KRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMS 522
            RGDV K+IQCYM E   SEEEA + +K LI  +WK +N        FP+ M     ++ 
Sbjct: 236 ARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIG 295

Query: 523 RTAHCIF-HGDGIGTSTGVSRDRLVSLILEPI 553
           R A  I+ HGDG G     + + +  L+ EP 
Sbjct: 296 RVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.37
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 80.89
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=8.4e-98  Score=772.02  Aligned_cols=326  Identities=41%  Similarity=0.766  Sum_probs=305.6

Q ss_pred             CCHHHHHHHHhhhHHHHHhhHHHHHHHHHHHhhhCCccchhHHHhhHHHHHHHHhccccCCCcchhhhhhhhHHHHHhhh
Q 044890          221 SGPILLTLAKLDYNLVQSIHQQELKELARWWSNLGFKEKLSFARDRLMENYLLVMGLCFKAQFSKCRIGLTKFVCILTAI  300 (557)
Q Consensus       221 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~ii  300 (557)
                      +|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|++|||.+++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             hcccccCCCHHHHHHHHHHHHhhccccccccCChhHHHHHHHHHHhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Q 044890          301 DDIYDVYGSIDELELFTEAVKRWEIGAVLEELPEYMQICYLAMFNFGNELAYDVMKIHGLNTLSYIKKEWENLCTSYLVE  380 (557)
Q Consensus       301 DD~fD~ygt~eEl~~ft~ai~rWd~~~~~~~LPeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~E  380 (557)
                      ||+||+|||+||++.||+||+|||+++ ++.||+|||+||.++++++++++.++.+.+|+++++|++++|++++++|++|
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~-~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~E  159 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTES-ITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHE  159 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSG-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHhhhcccccchhHHHHHHHHHHHhcCCCCCC-hhHHhhhhhccChhHHHHHHHHHHHHhcCccchh
Q 044890          381 ARWFSKGYTPTAKEYIENAWVSVGSPAAIVHAYILLQLQGSNDLT-ENSLSCLKVEHGYDEMIYWSSLISRLSNDLGNSA  459 (557)
Q Consensus       381 AkW~~~g~vPt~eEYl~~~~~SsG~~~~~~~~~~~~~~~~g~~l~-~ev~e~~~~~~~~p~i~~~~~~i~RL~NDI~S~~  459 (557)
                      |+|+++||+||+||||+++.+|+|+++++++++++|    |..++ +++++|+.   ++|+++++++.|+||+|||+||+
T Consensus       160 akW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~----~~~~~~~~~~~~~~---~~p~~~~~~~~i~RL~nDi~~~~  232 (328)
T d1n1ba2         160 AKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTF----ANASHDTAVIDSLY---QYHDILCLAGIILRLPDDLGTSY  232 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTS----TTCCCCHHHHHHHH---TTCHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhC----CCccchHHHHHHHh---ccHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999999999999999999999988    77655 55799998   89999999999999999999999


Q ss_pred             hhhhcCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHhhhhhhhcc-cCCCCCCc
Q 044890          460 VELKRGDVAKSIQCYMIEEGISEEEARDRIKSLIIYSWKKLNGKNLYKSDFPESMAKMCLDMSRTAHCIFH-GDGIGTST  538 (557)
Q Consensus       460 ~E~~rG~v~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~-~D~~t~~~  538 (557)
                      +|++||+++|+|+|||+|+|+|+|+|+++++++|+++||+||+++++++++|++|+++++|+||+++++|+ +||||.|+
T Consensus       233 ~E~~rg~~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~  312 (328)
T d1n1ba2         233 FELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQH  312 (328)
T ss_dssp             ------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----
T ss_pred             HHHhcCCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 99999998


Q ss_pred             hhHHHHHHhhhhcCcc
Q 044890          539 GVSRDRLVSLILEPIP  554 (557)
Q Consensus       539 ~~~k~~i~~l~~~pi~  554 (557)
                      +.+|++|++||++||.
T Consensus       313 ~~~k~~I~~ll~ePvs  328 (328)
T d1n1ba2         313 SKTYEHIAGLLFEPYA  328 (328)
T ss_dssp             CHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHhccCCC
Confidence            8899999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure