Citrus Sinensis ID: 044891

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNELSNQPIHEPYQVAVWT
ccccccccccccccccccEEEcEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHcccccccccHHHHHccccccccccccccccccc
cccccEEcccEEEEcccccccHHHHEEEEEccHHcccccccccccccHHHHHHHHHHHHccHHHHcEEEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccccHHHHEEEccccccccccccEEEEEc
rpedlegfGQAYVLSeeqkfvwgdgfimttlpvnlrkphlfpklplplrFSLCLFLEEMKNFFENGLQVMrmnyyppcpqpekvagltphsdgcglTILLQINEVeglqikkdgmwipltplpnaflvnVGDIMEIItngkyrsieHRATVNSVQERLSVGTfyytrydgevypasslisekaPALFRRLTVEEYLSGRFARELRGKSYLDWWLLnelsnqpihepyqvavwt
RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGkyrsiehratvnsvqerlSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNElsnqpihepyqvavwt
RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNlrkphlfpklplplrfslCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNELSNQPIHEPYQVAVWT
*******FGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNELSNQPIHEPYQVAV**
RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWW********************
RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNELSNQPIHEPYQVAVWT
***DLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNELSNQPIHEPYQVAVWT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLLNELSNQPIHEPYQVAVWT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.905 0.589 0.553 1e-72
D4N502360 Codeine O-demethylase OS= N/A no 0.896 0.580 0.538 4e-68
D4N501364 Probable 2-oxoglutarate/F N/A no 0.892 0.571 0.547 2e-66
D4N500364 Thebaine 6-O-demethylase N/A no 0.892 0.571 0.521 1e-61
A2A1A0352 S-norcoclaurine synthase N/A no 0.896 0.593 0.363 1e-36
Q9LTH8364 1-aminocyclopropane-1-car no no 0.605 0.387 0.441 1e-28
Q9MB94319 1-aminocyclopropane-1-car N/A no 0.545 0.398 0.4 5e-27
Q9LSW6362 1-aminocyclopropane-1-car no no 0.622 0.400 0.389 8e-27
P93821345 1-aminocyclopropane-1-car no no 0.613 0.414 0.394 1e-26
Q9LTH7366 1-aminocyclopropane-1-car no no 0.605 0.385 0.420 1e-26
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/235 (55%), Positives = 166/235 (70%), Gaps = 24/235 (10%)

Query: 1   RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFL---- 56
           RP+++EGFGQA+V+SE+QK  W D F  T  PV LRKPHLFPKLPLP R +L ++     
Sbjct: 120 RPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQ 179

Query: 57  ------------------EEMKNFFEN--GLQVMRMNYYPPCPQPEKVAGLTPHSDGCGL 96
                             EE++  F++   +Q MRMNYYPPCPQP++V GLTPHSD  GL
Sbjct: 180 SVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGL 239

Query: 97  TILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQE 156
           T+L+Q+N+VEGLQIKKDG W+P+ PLPNAF+VN+GD++EIITNG YRSIEHR  VNS +E
Sbjct: 240 TVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE 299

Query: 157 RLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLD 211
           RLS+ TF+      EV PA SL+  +  A F+RLT++EY  G F+R L GK+YLD
Sbjct: 300 RLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLD 354

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q9MB94|ACCO_PRUMU 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description
>sp|P93821|ACCH7_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 7 OS=Arabidopsis thaliana GN=At1g04380 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
224061385 355 predicted protein [Populus trichocarpa] 0.901 0.591 0.625 1e-78
363807040 358 uncharacterized protein LOC100777264 [Gl 0.901 0.586 0.590 1e-78
225453297 364 PREDICTED: protein SRG1 [Vitis vinifera] 0.905 0.579 0.609 2e-78
297734657316 unnamed protein product [Vitis vinifera] 0.905 0.667 0.609 2e-78
147776748 395 hypothetical protein VITISV_032872 [Viti 0.905 0.534 0.609 6e-78
224061381 359 predicted protein [Populus trichocarpa] 0.901 0.584 0.616 7e-78
255575141 364 Leucoanthocyanidin dioxygenase, putative 0.901 0.576 0.609 7e-78
225462507 366 PREDICTED: protein SRG1 [Vitis vinifera] 0.901 0.573 0.599 3e-76
297734658 367 unnamed protein product [Vitis vinifera] 0.905 0.574 0.592 3e-75
225453295 348 PREDICTED: protein SRG1 [Vitis vinifera] 0.905 0.606 0.592 3e-75
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/232 (62%), Positives = 168/232 (72%), Gaps = 22/232 (9%)

Query: 2   PEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFLEEMKN 61
           P ++EGFGQA+V+SEEQK  WGD F M T PV+ RKPHLFPKLPLP R ++  F  E+KN
Sbjct: 120 PGEVEGFGQAFVVSEEQKLDWGDLFFMVTQPVHARKPHLFPKLPLPFRDTVEAFSLELKN 179

Query: 62  F----------------------FENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTIL 99
                                  F NG Q MRMNYYPPCPQP+KV GLTPHSD  GLTIL
Sbjct: 180 LGITILGKMAKALKIEAEEVEELFGNGFQSMRMNYYPPCPQPDKVIGLTPHSDAVGLTIL 239

Query: 100 LQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLS 159
           LQ+NEVEGLQ+KKDG W+P+ PLPNAF+ NVGDI+EIITNG YRSIEHRATVNS +ERLS
Sbjct: 240 LQVNEVEGLQVKKDGKWVPVKPLPNAFIFNVGDILEIITNGTYRSIEHRATVNSEKERLS 299

Query: 160 VGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLD 211
           + TF    YDG + PASSL++E+ PA+F+  T EEY  G FAREL  KSYLD
Sbjct: 300 IATFLSPNYDGVIGPASSLVTEQTPAMFKSTTTEEYFKGLFARELHEKSYLD 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734658|emb|CBI16709.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453295|ref|XP_002269432.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.665 0.439 0.641 3.8e-60
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.665 0.432 0.611 7.8e-60
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.665 0.429 0.615 3.8e-56
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.665 0.435 0.602 1.3e-55
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.665 0.435 0.554 5.4e-53
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.669 0.428 0.449 1.2e-41
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.669 0.448 0.397 5.6e-34
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.635 0.398 0.432 2.4e-33
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.562 0.375 0.458 7.9e-33
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.626 0.413 0.417 2.1e-32
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 525 (189.9 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 100/156 (64%), Positives = 120/156 (76%)

Query:    57 EEMKNFFENGL-QVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGM 115
             EEM+  F++ L Q +RMNYYPPCP+P+K  GLTPHSD  GLTILLQ+NEVEGLQIKKDG 
Sbjct:   194 EEMEKLFDDELGQRIRMNYYPPCPEPDKAIGLTPHSDATGLTILLQVNEVEGLQIKKDGK 253

Query:   116 WIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPA 175
             W+ + PLPNA +VNVGDI+EIITNG YRSIEHR  VNS +ERLSV +F+ T +  E+ P 
Sbjct:   254 WVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVASFHNTGFGKEIGPM 313

Query:   176 SSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLD 211
              SL+     ALF+ LT EEY  G F+REL GK+YLD
Sbjct:   314 RSLVERHKGALFKTLTTEEYFHGLFSRELDGKAYLD 349
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-106
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-61
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-52
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-43
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-43
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 9e-43
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-41
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-41
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-40
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-39
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-35
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-33
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 9e-32
PLN02704335 PLN02704, PLN02704, flavonol synthase 7e-31
PLN02904357 PLN02904, PLN02904, oxidoreductase 4e-29
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 9e-27
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-25
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-25
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-19
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-19
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 8e-19
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 9e-18
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-16
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-09
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  309 bits (793), Expect = e-106
 Identities = 136/234 (58%), Positives = 164/234 (70%), Gaps = 23/234 (9%)

Query: 1   RPEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFL---- 56
           RP ++EGFGQA+V+SE+QK  W D F +T  PV LRKPHLFPKLPLP R +L  +     
Sbjct: 120 RPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVK 179

Query: 57  ------------------EEMKNFFENGL-QVMRMNYYPPCPQPEKVAGLTPHSDGCGLT 97
                             EEM+  F++ L Q +RMNYYPPCPQP++V GLTPHSD  GLT
Sbjct: 180 SIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLT 239

Query: 98  ILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQER 157
           ILLQ+NEVEGLQIKKDG W+ + PLPNA +VNVGDI+EIITNG YRSIEHR  VNS +ER
Sbjct: 240 ILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKER 299

Query: 158 LSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLD 211
           LSV TF+ T    E+ PA SL+  +  ALF+ LT +EY  G F+REL GK+YLD
Sbjct: 300 LSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLD 353

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
PLN02216357 protein SRG1 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02704335 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 96.68
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.48
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 92.69
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 92.21
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 91.81
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 89.17
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 87.29
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=6.2e-58  Score=418.95  Aligned_cols=213  Identities=62%  Similarity=1.043  Sum_probs=193.3

Q ss_pred             CCccccccCccCCCcCCCCceeeeeccccCCCCCCCCCCCCCCchhHHHHHHHH----------------------HHHH
Q 044891            3 EDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFL----------------------EEMK   60 (233)
Q Consensus         3 ~~~~GY~~~~~~~~~~~~dw~E~~~~~~~p~~~~~~n~WP~~~~~fr~~~~~y~----------------------~~~~   60 (233)
                      +..+||+........++.||+|.|.+...|...+.+|+||+.|++||+++++|+                      ++|.
T Consensus       122 ~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~  201 (357)
T PLN02216        122 GEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEME  201 (357)
T ss_pred             CCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            456799876655566788999999988777666789999999999999999999                      4555


Q ss_pred             hhccC-CcceEEEeecCCCCCCcCccccccccCCCCcEEEEecCCCCceEEeECCeEEEeecCCCeEEEcchhhhhhhhC
Q 044891           61 NFFEN-GLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITN  139 (233)
Q Consensus        61 ~~~~~-~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTlL~qd~~v~GLqV~~~g~W~~v~p~~~~lvvnvGd~l~~~Tn  139 (233)
                      +++.. ..+.||++|||||++++..+|+++|||+|+||||+||++++||||+++|+|++|+|++|+|||||||+||+|||
T Consensus       202 ~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TN  281 (357)
T PLN02216        202 KLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITN  281 (357)
T ss_pred             HHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcC
Confidence            66654 35789999999999988899999999999999999965799999999999999999999999999999999999


Q ss_pred             CeecCcCcccccCCCCCeeEEEEeeecCCCeEEecCCcccCCCCCCCCCCccHHHHHHHHHhhhcCCCcccchhcc
Q 044891          140 GKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDWWLL  215 (233)
Q Consensus       140 G~~ks~~HRVv~~~~~~R~S~~~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~~~~~~~~~~g~~~~d~~k~  215 (233)
                      |+|||++|||++++.++|+|++||++|+.|++|+|+++|+++++|++|++++++||+..++++.+.++..+|.+|+
T Consensus       282 G~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        282 GTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            9999999999998888999999999999999999999999999999999999999999999999999999998875

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-25
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-21
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-21
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 7e-20
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 5e-12
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-06
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 75/113 (66%)
Query: 71  RMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNV 130
           +++ YPPCP+P+ + GL  H+D  G+ +L Q ++V GLQ+ KDG WI + P  ++ +VN+
Sbjct: 158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNL 217
Query: 131 GDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYPASSLISEKA 183
           GD +E+ITNGKY+S+ HR        R S+ +FY    D  +YPA +L+ ++A
Sbjct: 218 GDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEA 270
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-90
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-86
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-48
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-46
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-41
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-38
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 8e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  268 bits (688), Expect = 3e-90
 Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 31/236 (13%)

Query: 2   PEDLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLR------------ 49
              ++G+G     +   +  W D F     P   R   ++PK P                
Sbjct: 119 TGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRL 178

Query: 50  FSLCLF-------------LEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGL 96
            +  +F             LE+     E  L  M++NYYP CPQPE   G+  H+D   L
Sbjct: 179 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL 238

Query: 97  TILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQE 156
           T +L  N V GLQ+  +G W+    +P++ ++++GD +EI++NGKY+SI HR  VN  + 
Sbjct: 239 TFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV 297

Query: 157 RLSVGTFYYTRYDGEVY-PASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLD 211
           R+S   F     D  V  P   ++S ++PA F   T  +++      +L GK   +
Sbjct: 298 RISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI----EHKLFGKEQEE 349
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 92.18
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 91.11
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.0
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 90.51
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 90.51
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 89.82
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 85.26
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=7.9e-56  Score=403.55  Aligned_cols=205  Identities=28%  Similarity=0.525  Sum_probs=185.5

Q ss_pred             CccccccCccCCCcCCCCceeeeeccccCCCCCCCCCCCCCCchhHHHHHHHH----------------------HHHHh
Q 044891            4 DLEGFGQAYVLSEEQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFL----------------------EEMKN   61 (233)
Q Consensus         4 ~~~GY~~~~~~~~~~~~dw~E~~~~~~~p~~~~~~n~WP~~~~~fr~~~~~y~----------------------~~~~~   61 (233)
                      .++||+........++.||+|+|++...|.....+|.||+.+++||+++++|+                      ++|.+
T Consensus       121 ~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~  200 (356)
T 1gp6_A          121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK  200 (356)
T ss_dssp             BCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHH
T ss_pred             CccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            57899887665666789999999998877544678999999999999999999                      34556


Q ss_pred             hcc---CCcceEEEeecCCCCCCcCccccccccCCCCcEEEEecCCCCceEEeECCeEEEeecCCCeEEEcchhhhhhhh
Q 044891           62 FFE---NGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIIT  138 (233)
Q Consensus        62 ~~~---~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTlL~qd~~v~GLqV~~~g~W~~v~p~~~~lvvnvGd~l~~~T  138 (233)
                      ++.   .+.+.||++|||||++++..+|+++|||+|+||||+|| +++||||+++|+|++|+|++|+|||||||+||+||
T Consensus       201 ~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~T  279 (356)
T 1gp6_A          201 EVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILS  279 (356)
T ss_dssp             HTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEEC-SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHT
T ss_pred             HhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEEc-CCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhc
Confidence            665   36788999999999998888999999999999999995 79999999999999999999999999999999999


Q ss_pred             CCeecCcCcccccCCCCCeeEEEEeeecCCCe-EEecCCcccCCCCCCCCCCccHHHHHHHHHhhhcCCCcc
Q 044891          139 NGKYRSIEHRATVNSVQERLSVGTFYYTRYDG-EVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSY  209 (233)
Q Consensus       139 nG~~ks~~HRVv~~~~~~R~S~~~F~~P~~d~-~i~pl~~~v~~~~p~~y~~~~~~ey~~~~~~~~~~g~~~  209 (233)
                      ||+|||+.|||+++++++|+|++||++|+.|+ +|+|+++|+++++|++|+++|++||+..+++++++|+..
T Consensus       280 nG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          280 NGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             TTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            99999999999998889999999999999999 999999999999999999999999999999888766543
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 8e-33
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-32
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-20
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 7e-20
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  118 bits (297), Expect = 8e-33
 Identities = 50/158 (31%), Positives = 91/158 (57%), Gaps = 3/158 (1%)

Query: 55  FLEEMKNFFENGLQVMRMNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDG 114
           +L+      +      +++ YPPCP+P+ + GL  H+D  G+ +L Q ++V GLQ+ KDG
Sbjct: 141 YLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG 200

Query: 115 MWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATVNSVQERLSVGTFYYTRYDGEVYP 174
            WI + P+ ++ +VN+GD +E+ITNGKY+S+ HR        R+S+ +FY    D  +YP
Sbjct: 201 QWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYP 260

Query: 175 ASSLI---SEKAPALFRRLTVEEYLSGRFARELRGKSY 209
           A +L+   +E+   ++ +   ++Y+      + + K  
Sbjct: 261 APALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEP 298
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 94.82
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.16
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=1.4e-51  Score=364.85  Aligned_cols=196  Identities=31%  Similarity=0.603  Sum_probs=170.3

Q ss_pred             cCCCCceeeeeccccCCCCCCCCCCCCCCchhHHHHHHHH----------------------HHHHhhcc---CCcceEE
Q 044891           17 EQKFVWGDGFIMTTLPVNLRKPHLFPKLPLPLRFSLCLFL----------------------EEMKNFFE---NGLQVMR   71 (233)
Q Consensus        17 ~~~~dw~E~~~~~~~p~~~~~~n~WP~~~~~fr~~~~~y~----------------------~~~~~~~~---~~~~~lr   71 (233)
                      ....||+|.|.+...|.  ...+.||+.+++||+++++|+                      ++|.+.+.   ...+.+|
T Consensus        80 ~~~~d~~e~~~~~~~~~--~~~~~~~~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr  157 (307)
T d1w9ya1          80 VTDMDWESTFFLKHLPI--SNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTK  157 (307)
T ss_dssp             GGGCCCCEEEEEEEESC--CGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEE
T ss_pred             ccccChhhhcccccccc--cCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhccccccccce
Confidence            34679999999876553  467889999999999999999                      23444442   2367899


Q ss_pred             EeecCCCCCCcCccccccccCCCCcEEEEecCCCCceEEeECCeEEEeecCCCeEEEcchhhhhhhhCCeecCcCccccc
Q 044891           72 MNYYPPCPQPEKVAGLTPHSDGCGLTILLQINEVEGLQIKKDGMWIPLTPLPNAFLVNVGDIMEIITNGKYRSIEHRATV  151 (233)
Q Consensus        72 ~~~Ypp~~~~~~~~g~~~HtD~~~lTlL~qd~~v~GLqV~~~g~W~~v~p~~~~lvvnvGd~l~~~TnG~~ks~~HRVv~  151 (233)
                      ++||||+++++...|+++|||+|+||||+|++.++||||.++|+|++|+|.+|++|||+||+||+||||+||||.|||+.
T Consensus       158 ~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~  237 (307)
T d1w9ya1         158 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIA  237 (307)
T ss_dssp             EEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECC
T ss_pred             ecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeec
Confidence            99999999998889999999999999999976789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEeeecCCCeEEecCCcccC---CCCCCCCCCccHHHHHHHHHhhhcCCCc-ccchhc
Q 044891          152 NSVQERLSVGTFYYTRYDGEVYPASSLIS---EKAPALFRRLTVEEYLSGRFARELRGKS-YLDWWL  214 (233)
Q Consensus       152 ~~~~~R~S~~~F~~P~~d~~i~pl~~~v~---~~~p~~y~~~~~~ey~~~~~~~~~~g~~-~~d~~k  214 (233)
                      +++.+|+|++||++|+.|++|+|+++|++   +++|++|+|+|++||++.+.+.++++|. +++.+|
T Consensus       238 ~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  304 (307)
T d1w9ya1         238 QKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMK  304 (307)
T ss_dssp             CSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHHHHHH
T ss_pred             CCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCcccHHHHHhh
Confidence            98899999999999999999999999986   4678999999999999999999988875 466555
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure